AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0531990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531990 MtrunA17_Chr8g0380271 97.921 866 13 4 1 862 1 865 0.0 1706
Msa0531990 MtrunA17_Chr3g0096441 26.002 873 500 30 18 862 23 777 1.52e-32 135
Msa0531990 MtrunA17_Chr5g0429151 50.685 73 33 1 18 87 10 82 1.42e-16 84.7
Msa0531990 MtrunA17_Chr8g0343521 39.837 123 62 3 4 126 6 116 2.09e-16 84.3
Msa0531990 MtrunA17_Chr5g0446841 40.000 100 57 2 18 114 16 115 1.54e-13 74.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0531990 AT1G29350.1 45.833 912 360 40 2 862 3 831 0.0 572
Msa0531990 AT1G29370.1 45.574 915 358 40 2 862 3 831 0.0 570
Msa0531990 AT1G29370.2 43.775 747 301 33 160 862 20 691 9.91e-150 457
Msa0531990 AT4G18150.1 36.111 900 381 40 6 855 3 758 3.21e-110 355
Msa0531990 AT5G46380.1 47.959 98 49 2 15 111 8 104 2.23e-18 90.5
Msa0531990 AT5G46380.2 47.959 98 49 2 15 111 63 159 2.38e-18 90.5
Msa0531990 AT3G13990.1 47.500 80 42 0 5 84 2 81 6.18e-16 83.2
Msa0531990 AT3G13990.2 47.500 80 42 0 5 84 2 81 6.34e-16 83.2
Msa0531990 AT3G07660.1 54.286 70 28 2 18 83 10 79 2.36e-15 81.3
Msa0531990 AT3G13222.1 32.927 164 78 7 4 165 3 136 9.27e-11 65.9

Find 295 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACAAAATGCCACTGTTTC+TGG 0.131454 4_1:+6051534 Msa0531990:CDS
TGAGAATGGTAGAAATTATT+AGG 0.188167 4_1:-6055069 None:intergenic
TTGTCAAGATGCAGGCTTTA+AGG 0.189462 4_1:+6054134 Msa0531990:intron
TGCAGAAATCCCGACTATTA+TGG 0.197232 4_1:+6051730 Msa0531990:intron
TTTGTATAATACTCAGAATT+TGG 0.210938 4_1:-6050622 None:intergenic
AGTCTGAGCTTTGGAAGTTT+TGG 0.226818 4_1:+6051507 Msa0531990:CDS
ACTGCTTAGGTGGTTGGCTT+TGG 0.229453 4_1:-6055152 None:intergenic
CTGCTTAGGTGGTTGGCTTT+GGG 0.240326 4_1:-6055151 None:intergenic
GCAGGCATTGCTTGTGTAAC+AGG 0.247275 4_1:-6052759 None:intergenic
TATGATTGTTATCCTTATAC+TGG 0.256360 4_1:-6054564 None:intergenic
CCAGGCAAAGATTGTTGATT+AGG 0.276204 4_1:-6054187 None:intergenic
ATATTCCTTTCAGCTGAAAA+TGG 0.278424 4_1:+6051354 Msa0531990:intron
GATAATCCAGGAACTGCTTC+TGG 0.289516 4_1:+6050781 Msa0531990:CDS
GGAAGTTCCACCAGCATTCC+TGG 0.294224 4_1:+6054469 Msa0531990:CDS
TACTCCGATCCCCTCGAGTT+AGG 0.296450 4_1:-6048775 None:intergenic
ATACCATCTGGATATGGTTT+TGG 0.299580 4_1:+6054448 Msa0531990:CDS
GTAACAGGGAAGGGTGAGTA+TGG 0.301650 4_1:-6052744 None:intergenic
ACATACCATTGTTACTGAAT+TGG 0.307160 4_1:-6049353 None:intergenic
GCTACTGATGTTTCAGCAAT+TGG 0.311438 4_1:+6051612 Msa0531990:CDS
CTCCTCCAAGTTACTTTGTA+AGG 0.312134 4_1:-6051580 None:intergenic
TAATGATGACCAAGAATAAA+AGG 0.321808 4_1:-6055511 None:intergenic
AATGCTGCTGCGATGGCTGC+TGG 0.323633 4_1:-6055029 None:intergenic
CCTGGTGCTGGTGTTGCCAC+TGG 0.327217 4_1:+6054205 Msa0531990:CDS
CCCGTGTTTAAGAAAGAAAA+TGG 0.342626 4_1:+6049649 Msa0531990:CDS
CGTGATAAACTCCCAGTATA+AGG 0.343410 4_1:+6054552 Msa0531990:CDS
CCTAGGGATGCTTCCCTTGC+CGG 0.343729 4_1:+6055126 Msa0531990:CDS
GCAGAAATCCCGACTATTAT+GGG 0.344135 4_1:+6051731 Msa0531990:intron
GACTAAAACACTCTGGAGTA+TGG 0.347028 4_1:-6051488 None:intergenic
TCATCACTCTGTTGAACATT+GGG 0.349769 4_1:-6050553 None:intergenic
AGTAACTTGGAGGAGACTTC+TGG 0.354552 4_1:+6051588 Msa0531990:CDS
GAAAATGGAACGCCTGCTTA+TGG 0.359441 4_1:+6049664 Msa0531990:CDS
TGAACATTGGGTTCAATAGA+AGG 0.361624 4_1:-6050502 None:intergenic
GTATGGAGTTGTAGGTGATT+TGG 0.365100 4_1:-6051471 None:intergenic
TGTCAAGATGCAGGCTTTAA+GGG 0.371015 4_1:+6054135 Msa0531990:intron
CCACTGTGGACAGAAGATTT+AGG 0.371116 4_1:-6050403 None:intergenic
AGCAACATGGCTTCTTCAAT+TGG 0.373493 4_1:+6052789 Msa0531990:CDS
TCATCACTCTGTTGAACATT+GGG 0.374072 4_1:-6050514 None:intergenic
TCATATCCAGAAGCAGTTCC+TGG 0.381408 4_1:-6050787 None:intergenic
AGGTGGTTGGCTTTGGGAGC+CGG 0.383810 4_1:-6055145 None:intergenic
GTGGCATAGATCTCGTTATC+AGG 0.387328 4_1:-6048909 None:intergenic
TATCCAATGGTTGTACTAGT+AGG 0.392226 4_1:-6054523 None:intergenic
ATGTTAAATGTACCATTGTT+TGG 0.394612 4_1:+6055294 Msa0531990:three_prime_UTR
TTCTTTGCCCAATGCTCTGT+TGG 0.399402 4_1:+6052689 Msa0531990:CDS
ACCGGCGGCGAGTCGGAAAA+TGG 0.402820 4_1:+6048854 Msa0531990:CDS
GGCAATATATCCCACATAAC+TGG 0.405437 4_1:+6051781 Msa0531990:CDS
TAAACACGGGTTTACTCTGC+TGG 0.406086 4_1:-6049636 None:intergenic
GTTGGGACTGCTTAGGTGGT+TGG 0.411643 4_1:-6055158 None:intergenic
TAAAGCCTCTGGTTGTGAAA+TGG 0.415654 4_1:-6051833 None:intergenic
AAAGAGTATTGTTGTAATAC+AGG 0.416464 4_1:-6055422 None:intergenic
GAATGAGGATATGCAACTTC+TGG 0.418587 4_1:-6051943 None:intergenic
ATATGCAACTTCTGGTTGTT+GGG 0.418891 4_1:-6051935 None:intergenic
TGGAGAAGGGAGATAGGTTC+TGG 0.424665 4_1:-6051984 None:intergenic
GGTTCAGACTTTAAAGCCTC+TGG 0.425019 4_1:-6051844 None:intergenic
CAATGCTCTGTTGGCTTCAA+CGG 0.425294 4_1:+6052698 Msa0531990:CDS
ATCATCGTTGTCGGGTATAC+CGG 0.425443 4_1:+6048836 Msa0531990:CDS
GTTGGCTTTGGGAGCCGGCA+AGG 0.425841 4_1:-6055140 None:intergenic
TCCGTGTTCTGTCTCATATA+TGG 0.427991 4_1:+6055486 Msa0531990:three_prime_UTR
GCTGCTATACCATCTGGATA+TGG 0.428437 4_1:+6054442 Msa0531990:CDS
TGTGCATCCGTACTCACAGC+TGG 0.430757 4_1:+6054252 Msa0531990:CDS
GTTGTTGTTGATTCTGTCCC+TGG 0.432205 4_1:-6054984 None:intergenic
AGACGACTAACAGCTTCGTT+AGG 0.434553 4_1:-6048954 None:intergenic
TGGTCCGAAGAGACCCAATA+TGG 0.434603 4_1:+6055314 Msa0531990:three_prime_UTR
ACTCCGATCCCCTCGAGTTA+GGG 0.435939 4_1:-6048774 None:intergenic
ACTCTGGAGTATGGAGTTGT+AGG 0.436906 4_1:-6051479 None:intergenic
CCGGCCATATTGGGTCTCTT+CGG 0.441041 4_1:-6055318 None:intergenic
TATAATACTCAGAATTTGGA+TGG 0.442532 4_1:-6050618 None:intergenic
GAAGCAGATCCAACATCAAC+AGG 0.444671 4_1:-6050733 None:intergenic
TCACCTTCGTTGTCATCAAA+AGG 0.445731 4_1:-6050856 None:intergenic
CAGTCTGCTGCTATACCATC+TGG 0.448979 4_1:+6054436 Msa0531990:CDS
TGATGGACAATAATGTAAAC+AGG 0.450601 4_1:+6049716 Msa0531990:CDS
GTAAGGATGAGCGGCAAAGT+AGG 0.453242 4_1:+6048795 Msa0531990:exon
CTGGAAGCTGTAATACGTGC+TGG 0.453247 4_1:-6054965 None:intergenic
TGAACATTGGGGTCAATAGA+AGG 0.454561 4_1:-6050541 None:intergenic
GAGAATGGTAGAAATTATTA+GGG 0.455029 4_1:-6055068 None:intergenic
AACAATCCTATGTGGGTTCA+AGG 0.455407 4_1:+6054913 Msa0531990:CDS
ATTATATCTGATGATAATCC+AGG 0.457309 4_1:+6050769 Msa0531990:CDS
AACTCGAGGGGATCGGAGTA+AGG 0.457374 4_1:+6048778 Msa0531990:five_prime_UTR
ATCCAATGGTTGTACTAGTA+GGG 0.460599 4_1:-6054522 None:intergenic
CTACTGATGTTTCAGCAATT+GGG 0.460752 4_1:+6051613 Msa0531990:CDS
TTGGCTTTGGGAGCCGGCAA+GGG 0.466160 4_1:-6055139 None:intergenic
AATTGTTGTTGGGACTGCTT+AGG 0.468035 4_1:-6055165 None:intergenic
AACATGGCTTCTTCAATTGG+TGG 0.468306 4_1:+6052792 Msa0531990:CDS
TTCATCACTCTGTTGAACAT+TGG 0.471449 4_1:-6050515 None:intergenic
TTATACAAATACATCTAACT+TGG 0.471805 4_1:+6050636 Msa0531990:CDS
TTGCTCTTAACCTCATGAAA+AGG 0.472617 4_1:-6049084 None:intergenic
TCATATGATTTCACTTCAGC+AGG 0.476681 4_1:+6054582 Msa0531990:CDS
CATGCCATCGGCATTTCAGC+AGG 0.476730 4_1:+6054327 Msa0531990:CDS
CAGCACGTATTACAGCTTCC+AGG 0.479728 4_1:+6054966 Msa0531990:CDS
CGCGGCGGTGGTGGTAGGAC+TGG 0.479900 4_1:+6049285 Msa0531990:CDS
CAACAATCTTTGCCTGGTGC+TGG 0.482125 4_1:+6054193 Msa0531990:CDS
CGCCACCACGGCCAGCATAT+CGG 0.484251 4_1:-6049314 None:intergenic
TTCATCACTCTGTTGAACAT+TGG 0.484635 4_1:-6050554 None:intergenic
GTTAGTCGTCTTCTTTCTCA+AGG 0.485543 4_1:+6048966 Msa0531990:CDS
TAAGGATGAGCGGCAAAGTA+GGG 0.485905 4_1:+6048796 Msa0531990:exon
CAAAAGGATGTCGATGAGAC+TGG 0.486306 4_1:-6050840 None:intergenic
GAAGCACCGCTGCCAGAGAT+TGG 0.486453 4_1:-6054375 None:intergenic
TTACACTGGAGAAGGGAGAT+AGG 0.487511 4_1:-6051990 None:intergenic
ACATCAGAATTGTCCTCCTC+TGG 0.487648 4_1:-6051441 None:intergenic
AGATTTAGGCACGGATGCCT+TGG 0.488437 4_1:-6050389 None:intergenic
GTTGAAGCCAACAGAGCATT+GGG 0.490742 4_1:-6052696 None:intergenic
TACGCTCGTGATGTTAACTT+AGG 0.490743 4_1:+6055379 Msa0531990:three_prime_UTR
CCTATGTGGGTTCAAGGGCC+TGG 0.491914 4_1:+6054919 Msa0531990:CDS
CGTTGAAGCCAACAGAGCAT+TGG 0.495525 4_1:-6052697 None:intergenic
GATATGCAACTTCTGGTTGT+TGG 0.498257 4_1:-6051936 None:intergenic
GAGCCCAGGTCAAGTGTCAA+TGG 0.500187 4_1:+6050336 Msa0531990:CDS
TAGCACCTACCACCAATCTC+TGG 0.500268 4_1:+6054363 Msa0531990:CDS
ACATAACTGGTGTGGATGCT+AGG 0.500709 4_1:+6051794 Msa0531990:CDS
TCAGCCATTGACACTTGACC+TGG 0.501383 4_1:-6050340 None:intergenic
TGCTCATCCCCATAATAGTC+GGG 0.501814 4_1:-6051739 None:intergenic
AGGTACATCATCATCGTTGT+CGG 0.502101 4_1:+6048827 Msa0531990:CDS
TCTGCATGGTCGGCGAGCCC+AGG 0.502549 4_1:+6050322 Msa0531990:CDS
TAGCATCCACACCAGTTATG+TGG 0.502709 4_1:-6051792 None:intergenic
GGCACGGATGCCTTGGCCTG+TGG 0.503151 4_1:-6050382 None:intergenic
AATGCCACTGTTTCTGGAGC+CGG 0.504252 4_1:+6051540 Msa0531990:CDS
TAACTTATCATATTAGCAAA+AGG 0.504719 4_1:-6054277 None:intergenic
TAGGCCCTTACAAAGTAACT+TGG 0.504725 4_1:+6051575 Msa0531990:CDS
CCGGCAAGGGAAGCATCCCT+AGG 0.505021 4_1:-6055126 None:intergenic
TAAACAGGCAGCCACCATCT+TGG 0.509603 4_1:+6049731 Msa0531990:CDS
AAGTTGTGATGCGAGGCTGC+TGG 0.511504 4_1:-6050451 None:intergenic
TGAACCCTCTGAAACTGCTC+AGG 0.513104 4_1:+6051861 Msa0531990:CDS
TTCTGTTGCAGTGATTCTGT+TGG 0.513872 4_1:+6050253 Msa0531990:intron
CGATATGCTGGCCGTGGTGG+CGG 0.514178 4_1:+6049315 Msa0531990:CDS
TGTGAGCTTGCTTGTGAATG+AGG 0.515023 4_1:-6051958 None:intergenic
GTGGAGGAGCCTCCATAAGC+AGG 0.516664 4_1:-6049676 None:intergenic
GGTGCAAAATGCTGCTGCGA+TGG 0.517018 4_1:-6055036 None:intergenic
TGGGAACGCCTCGTATTGAT+TGG 0.517342 4_1:-6055264 None:intergenic
GATGGGTAGGCCACAGGCCA+AGG 0.517499 4_1:+6050372 Msa0531990:CDS
ACTGACATTGTTCGAGAACC+AGG 0.517878 4_1:-6054937 None:intergenic
ATAGTTTCCACCAGGAATGC+TGG 0.518703 4_1:-6054479 None:intergenic
GAGAAATCCCACTCTGAGAA+TGG 0.519187 4_1:-6055083 None:intergenic
ATCTCCCTTCTCCAGTGTAA+TGG 0.521345 4_1:+6051993 Msa0531990:CDS
TTACTGAAGCAAATAATGAA+TGG 0.524202 4_1:+6050479 Msa0531990:CDS
GACGACTAACAGCTTCGTTA+GGG 0.524337 4_1:-6048953 None:intergenic
ATGCCACTGTTTCTGGAGCC+GGG 0.524558 4_1:+6051541 Msa0531990:CDS
GAGCCGGGACACATTCATCT+AGG 0.527788 4_1:+6051556 Msa0531990:CDS
AATATACCGAGTCGCGGCGG+TGG 0.527893 4_1:+6049273 Msa0531990:CDS
CATTACCATTACACTGGAGA+AGG 0.529209 4_1:-6051998 None:intergenic
GCCCTTACAAAGTAACTTGG+AGG 0.530352 4_1:+6051578 Msa0531990:CDS
ACTGGTAGTGACCGATATGC+TGG 0.533784 4_1:+6049303 Msa0531990:CDS
ATTTCTACCATTCTCAGAGT+GGG 0.534749 4_1:+6055076 Msa0531990:CDS
CGGGTATACCGGCGGCGAGT+CGG 0.537690 4_1:+6048847 Msa0531990:CDS
CGAGTCGCGGCGGTGGTGGT+AGG 0.539404 4_1:+6049280 Msa0531990:CDS
ATACCGAGTCGCGGCGGTGG+TGG 0.539664 4_1:+6049276 Msa0531990:CDS
TAATTACTCCCACGTGACCT+TGG 0.540089 4_1:-6049249 None:intergenic
AACATCAGCAGCAGAACCCT+AGG 0.541212 4_1:+6055109 Msa0531990:CDS
GGTACATCATCATCGTTGTC+GGG 0.541357 4_1:+6048828 Msa0531990:CDS
TATGCTGGCCGTGGTGGCGG+TGG 0.541966 4_1:+6049318 Msa0531990:CDS
CCAGTGGCAACACCAGCACC+AGG 0.542760 4_1:-6054205 None:intergenic
GTAAACTCATGCGAAGATGA+AGG 0.543874 4_1:-6051901 None:intergenic
TCCTCCAAGTTACTTTGTAA+GGG 0.545463 4_1:-6051579 None:intergenic
ATGCTCATCCCCATAATAGT+CGG 0.545903 4_1:-6051740 None:intergenic
AAAGGTCCCAGCTGTGAGTA+CGG 0.546189 4_1:-6054259 None:intergenic
TGGCTTTGTCGAAATGCACC+TGG 0.547698 4_1:-6055009 None:intergenic
CAGCTACAAATTCATTTCCG+TGG 0.549215 4_1:-6050684 None:intergenic
CCTAATCAACAATCTTTGCC+TGG 0.549819 4_1:+6054187 Msa0531990:CDS
TGTCAAGATGGGTAGGCCAC+AGG 0.551390 4_1:+6050366 Msa0531990:CDS
AACTTGCACCACCGCCACCA+CGG 0.554060 4_1:-6049326 None:intergenic
TTCTTCCATTTCACAACCAG+AGG 0.555873 4_1:+6051828 Msa0531990:CDS
TACTAATCCTAATCACCTCC+CGG 0.559374 4_1:+6055201 Msa0531990:exon
CTACCACCACCGCCGCGACT+CGG 0.562671 4_1:-6049279 None:intergenic
AACCACATACTTGGCATCTG+AGG 0.563576 4_1:-6051637 None:intergenic
AAAGATAAATACCTCCAAGA+TGG 0.563649 4_1:-6049745 None:intergenic
GTCTTATGCATCTAGTGTGA+TGG 0.563807 4_1:+6049699 Msa0531990:CDS
GAACCCTAACTCGAGGGGAT+CGG 0.565653 4_1:+6048771 Msa0531990:five_prime_UTR
CATTGCTTGTGTAACAGGGA+AGG 0.569151 4_1:-6052754 None:intergenic
ACAGGCAGCCACCATCTTGG+AGG 0.569197 4_1:+6049734 Msa0531990:CDS
TGTTGTTGGGACTGCTTAGG+TGG 0.569521 4_1:-6055162 None:intergenic
TGTTGATTAGGTTGAGCTTG+AGG 0.571227 4_1:-6054175 None:intergenic
TGGAAGCTGTAATACGTGCT+GGG 0.572788 4_1:-6054964 None:intergenic
GAGTATGGGATATCCTCCCT+TGG 0.575189 4_1:-6052729 None:intergenic
GTAGAGATAAGTATTGTGAT+CGG 0.576105 4_1:+6048739 Msa0531990:five_prime_UTR
AATGGCTGACATTGTCAAGA+TGG 0.577715 4_1:+6050354 Msa0531990:CDS
CTACCACCAATCTCTGGCAG+CGG 0.578357 4_1:+6054369 Msa0531990:CDS
AGCACGTATTACAGCTTCCA+GGG 0.578501 4_1:+6054967 Msa0531990:CDS
CCGAAGAGACCCAATATGGC+CGG 0.579027 4_1:+6055318 Msa0531990:three_prime_UTR
ATGTTCAACAGAGTGATGAA+TGG 0.579550 4_1:+6050518 Msa0531990:CDS
ATGTTCAACAGAGTGATGAA+TGG 0.579550 4_1:+6050557 Msa0531990:CDS
GTATAGCTCTGAGGCATGAA+CGG 0.580543 4_1:-6054301 None:intergenic
GGGCCTAGATGAATGTGTCC+CGG 0.582233 4_1:-6051559 None:intergenic
CAGGCATTGCTTGTGTAACA+GGG 0.583522 4_1:-6052758 None:intergenic
GTACTAGTAGGGGCAGCTGA+TGG 0.583533 4_1:-6054511 None:intergenic
ATGATTGTTATCCTTATACT+GGG 0.584516 4_1:-6054563 None:intergenic
CCAGGCCCTTGAACCCACAT+AGG 0.584672 4_1:-6054919 None:intergenic
GATGAGAATCCTGTTGATGT+TGG 0.584695 4_1:+6050724 Msa0531990:CDS
GCCCCTACTAGTACAACCAT+TGG 0.585988 4_1:+6054520 Msa0531990:CDS
AGCATCCACACCAGTTATGT+GGG 0.586141 4_1:-6051791 None:intergenic
GGGGCAGCTGATGGATTCAA+AGG 0.586575 4_1:-6054502 None:intergenic
ATGGCTGACATTGTCAAGAT+GGG 0.587015 4_1:+6050355 Msa0531990:CDS
CTGTCTTCATCATCACATCA+TGG 0.587021 4_1:+6050289 Msa0531990:CDS
TACATTTAACATTAGACCGT+GGG 0.587062 4_1:-6055283 None:intergenic
AGAGATAGAAAACACGAAGA+GGG 0.588714 4_1:+6048650 Msa0531990:five_prime_UTR
ACAATCCTATGTGGGTTCAA+GGG 0.590132 4_1:+6054914 Msa0531990:CDS
TATCACGTCATCATATCCAA+TGG 0.592769 4_1:-6054536 None:intergenic
CATGTTACAGTCTTTGAGAG+TGG 0.592942 4_1:-6048928 None:intergenic
TAACAGGGAAGGGTGAGTAT+GGG 0.593054 4_1:-6052743 None:intergenic
GGATGCACAGCAAGGTGTTG+AGG 0.593434 4_1:-6054238 None:intergenic
GATAAATACCTCCAAGATGG+TGG 0.593978 4_1:-6049742 None:intergenic
TATACAAATACATCTAACTT+GGG 0.595181 4_1:+6050637 Msa0531990:CDS
CATATTGCTACTACCTCAGA+TGG 0.595267 4_1:+6051760 Msa0531990:CDS
ATTGCTTGTGTAACAGGGAA+GGG 0.596414 4_1:-6052753 None:intergenic
GTGCATCCGTACTCACAGCT+GGG 0.596507 4_1:+6054253 Msa0531990:CDS
TGCGGCTGAACCCTAACTCG+AGG 0.598394 4_1:+6048764 Msa0531990:five_prime_UTR
AGAATGAGAACAATCCTATG+TGG 0.598777 4_1:+6054905 Msa0531990:intron
ATCAATACGAGGCGTTCCCA+CGG 0.599819 4_1:+6055267 Msa0531990:three_prime_UTR
CATCAACAACAACTGTTGGT+GGG 0.601667 4_1:-6050594 None:intergenic
AAGCTCAGACTAAAACACTC+TGG 0.601824 4_1:-6051495 None:intergenic
CTAAATCTTCTGTCCACAGT+GGG 0.603435 4_1:+6050404 Msa0531990:CDS
GTTGGTGGGTGCTCAACAGA+AGG 0.604734 4_1:-6050580 None:intergenic
TTCAAAGGATAGTTTCCACC+AGG 0.605161 4_1:-6054487 None:intergenic
AATGGAACGCCTGCTTATGG+AGG 0.606529 4_1:+6049667 Msa0531990:CDS
GCAAGGTGTTGAGGAAGTGA+AGG 0.606894 4_1:-6054229 None:intergenic
CCTAAATCTTCTGTCCACAG+TGG 0.609597 4_1:+6050403 Msa0531990:CDS
ATAATACTCAGAATTTGGAT+GGG 0.610849 4_1:-6050617 None:intergenic
ACAACAGAACCAAGGTCACG+TGG 0.611217 4_1:+6049240 Msa0531990:CDS
TATATCCCACATAACTGGTG+TGG 0.611883 4_1:+6051786 Msa0531990:CDS
GAGCTATACCTACATGCCAT+CGG 0.612525 4_1:+6054315 Msa0531990:CDS
GCACCGCTGCCAGAGATTGG+TGG 0.613306 4_1:-6054372 None:intergenic
GAGAGATAGAAAACACGAAG+AGG 0.613579 4_1:+6048649 Msa0531990:five_prime_UTR
AGTGACCGATATGCTGGCCG+TGG 0.613894 4_1:+6049309 Msa0531990:CDS
ATATGATGATAATTTGTACA+AGG 0.614124 4_1:+6050804 Msa0531990:CDS
AGCAGTCCCAACAACAATTG+TGG 0.614795 4_1:+6055169 Msa0531990:CDS
CGGCAAGGGAAGCATCCCTA+GGG 0.614858 4_1:-6055125 None:intergenic
AATTTACACACAGATGAGCA+AGG 0.615714 4_1:+6051411 Msa0531990:CDS
CCAATGCATTACCATTACAC+TGG 0.615927 4_1:-6052004 None:intergenic
TGAGCAAGGGACAGAACCAG+AGG 0.616906 4_1:+6051425 Msa0531990:CDS
CTTCCAAAACCATATCCAGA+TGG 0.617034 4_1:-6054451 None:intergenic
CTGACATTGTCAAGATGGGT+AGG 0.617049 4_1:+6050359 Msa0531990:CDS
GAATACAACTACTGTCACAT+GGG 0.617527 4_1:-6055345 None:intergenic
TCGAACCAATTCAGTAACAA+TGG 0.617541 4_1:+6049348 Msa0531990:CDS
TCCAATGGTTGTACTAGTAG+GGG 0.620354 4_1:-6054521 None:intergenic
GCATCAACAACAACTGTTGG+TGG 0.620968 4_1:-6050595 None:intergenic
AACATTCAAGTTGTGATGCG+AGG 0.621627 4_1:-6050458 None:intergenic
CAGCCATTGACACTTGACCT+GGG 0.622423 4_1:-6050339 None:intergenic
TGGGCATCAACAACAACTGT+TGG 0.624347 4_1:-6050598 None:intergenic
TTGAGGAAGTGAAGGTCCAG+TGG 0.626322 4_1:-6054221 None:intergenic
AAGGATGAGCGGCAAAGTAG+GGG 0.626473 4_1:+6048797 Msa0531990:exon
GAATGAGAACAATCCTATGT+GGG 0.626818 4_1:+6054906 Msa0531990:intron
GCGGCTGAACCCTAACTCGA+GGG 0.627579 4_1:+6048765 Msa0531990:five_prime_UTR
AGAATACAACTACTGTCACA+TGG 0.628248 4_1:-6055346 None:intergenic
CACACTAGATGCATAAGACG+TGG 0.629917 4_1:-6049695 None:intergenic
TGGATTGCAATCTGCATGGT+CGG 0.630287 4_1:+6050312 Msa0531990:CDS
AAAGCCTGCTGAAATGCCGA+TGG 0.631956 4_1:-6054331 None:intergenic
CGCTGCCAGAGATTGGTGGT+AGG 0.632641 4_1:-6054368 None:intergenic
TACCTCTGACATGTTTATCG+TGG 0.632657 4_1:-6052817 None:intergenic
GTGGGATATATTGCCATCTG+AGG 0.632746 4_1:-6051773 None:intergenic
AATTTCTACCATTCTCAGAG+TGG 0.633896 4_1:+6055075 Msa0531990:CDS
GATTCTGTTGGTGTCCATGA+CGG 0.634224 4_1:+6050265 Msa0531990:CDS
CTGAAATGCCGATGGCATGT+AGG 0.634576 4_1:-6054323 None:intergenic
GACCGATATGCTGGCCGTGG+TGG 0.634825 4_1:+6049312 Msa0531990:CDS
AGCTGAAGACAGTTCTGTTG+AGG 0.637818 4_1:+6050702 Msa0531990:CDS
AGGATGAGCGGCAAAGTAGG+GGG 0.638263 4_1:+6048798 Msa0531990:exon
TGAAAATGGTGTTTCATCAG+TGG 0.638285 4_1:+6051368 Msa0531990:CDS
AACGGTTCAAACACCAAGGG+AGG 0.641331 4_1:+6052716 Msa0531990:CDS
GCAAGGGACAGAACCAGAGG+AGG 0.642696 4_1:+6051428 Msa0531990:CDS
ATGATGAAGACAGTCCGTCA+TGG 0.643081 4_1:-6050279 None:intergenic
GATGGTATAGCAGCAGACTG+AGG 0.645781 4_1:-6054433 None:intergenic
CAGAATCAACAACAACAACC+AGG 0.645981 4_1:+6054991 Msa0531990:CDS
ACATCAGCAGCAGAACCCTA+GGG 0.646794 4_1:+6055110 Msa0531990:CDS
CAGAAATCCCGACTATTATG+GGG 0.649539 4_1:+6051732 Msa0531990:intron
ATTTACACACAGATGAGCAA+GGG 0.649851 4_1:+6051412 Msa0531990:CDS
ATCGTTGTCGGGTATACCGG+CGG 0.650301 4_1:+6048839 Msa0531990:CDS
GGTCTCTTCGGACCAAACAA+TGG 0.653982 4_1:-6055306 None:intergenic
GTGAGTACGGATGCACAGCA+AGG 0.655238 4_1:-6054246 None:intergenic
CACTCTCAAAGACTGTAACA+TGG 0.656952 4_1:+6048929 Msa0531990:CDS
GTTTCCACCAGGAATGCTGG+TGG 0.657460 4_1:-6054476 None:intergenic
ATTACCATTACACTGGAGAA+GGG 0.657757 4_1:-6051997 None:intergenic
CGGCTGAACCCTAACTCGAG+GGG 0.659200 4_1:+6048766 Msa0531990:five_prime_UTR
CTTCAACGGTTCAAACACCA+AGG 0.659295 4_1:+6052712 Msa0531990:CDS
AATACAACTACTGTCACATG+GGG 0.662553 4_1:-6055344 None:intergenic
CATCACTCTGTTGAACATTG+GGG 0.665234 4_1:-6050552 None:intergenic
AATAGACAACTGCAGAACCA+CGG 0.668240 4_1:+6050667 Msa0531990:CDS
GTACATTTAACATTAGACCG+TGG 0.669271 4_1:-6055284 None:intergenic
GGGATCGGAGTAAGGATGAG+CGG 0.672525 4_1:+6048786 Msa0531990:exon
TATAATATACCGAGTCGCGG+CGG 0.673631 4_1:+6049270 Msa0531990:CDS
GCCTGCAAAATATAGCAACA+TGG 0.677043 4_1:+6052776 Msa0531990:CDS
TGTTAATAACATACGGACGA+TGG 0.678696 4_1:-6055568 None:intergenic
TAAGTATTGTGATCGGAGTG+CGG 0.680201 4_1:+6048746 Msa0531990:five_prime_UTR
CATTCTGATGATTCCCACTG+TGG 0.681276 4_1:-6050417 None:intergenic
GCCATATATGAGACAGAACA+CGG 0.681877 4_1:-6055487 None:intergenic
TTCCACGATAAACATGTCAG+AGG 0.686512 4_1:+6052815 Msa0531990:CDS
AGTTCCACCAGCATTCCTGG+TGG 0.687385 4_1:+6054472 Msa0531990:CDS
AATTATAATATACCGAGTCG+CGG 0.693817 4_1:+6049267 Msa0531990:CDS
GTGGACAGAAGATTTAGGCA+CGG 0.697837 4_1:-6050398 None:intergenic
TTCAACGGTTCAAACACCAA+GGG 0.698105 4_1:+6052713 Msa0531990:CDS
ATGGTGGATTGCAATCTGCA+TGG 0.698767 4_1:+6050308 Msa0531990:CDS
TGTCCCGGCTCCAGAAACAG+TGG 0.704706 4_1:-6051544 None:intergenic
TCTTCATCATCACATCATGG+TGG 0.706000 4_1:+6050292 Msa0531990:CDS
ACTAGATGCATAAGACGTGG+AGG 0.713779 4_1:-6049692 None:intergenic
GGCATGTAGGTATAGCTCTG+AGG 0.714504 4_1:-6054310 None:intergenic
AAGCTGTAATACGTGCTGGG+AGG 0.724449 4_1:-6054961 None:intergenic
CAACAGAACCAAGGTCACGT+GGG 0.726867 4_1:+6049241 Msa0531990:CDS
GAAAATGACCAATCAATACG+AGG 0.743139 4_1:+6055256 Msa0531990:three_prime_UTR
GTAAGGATACAACAGAACCA+AGG 0.748600 4_1:+6049232 Msa0531990:CDS
AAATTATTAGGGTACCCGTG+CGG 0.792199 4_1:-6055057 None:intergenic
ATACAACTACTGTCACATGG+GGG 0.798216 4_1:-6055343 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTGTATTTGTTT+AGG + chr4_1:6049209-6049228 Msa0531990:intron 10.0%
!!! TTTTTTTTTGTATTTGTTTA+GGG + chr4_1:6049210-6049229 Msa0531990:intron 10.0%
!! AAGTATTATGTATTATATTA+AGG - chr4_1:6052510-6052529 None:intergenic 10.0%
!!! ATCATTTAAAGCAAATTTTA+TGG - chr4_1:6050921-6050940 None:intergenic 15.0%
!!! GTTTGTACATTATTATTTTA+TGG + chr4_1:6050998-6051017 Msa0531990:intron 15.0%
!!! AACAATATATATTTTAAAGC+TGG + chr4_1:6052048-6052067 Msa0531990:intron 15.0%
!! TAATTAATTATAATCAGTTC+TGG + chr4_1:6052294-6052313 Msa0531990:intron 15.0%
!! TATGTATTATATTAAGGAAA+GGG - chr4_1:6052504-6052523 None:intergenic 15.0%
!! TTATGTATTATATTAAGGAA+AGG - chr4_1:6052505-6052524 None:intergenic 15.0%
!! ATAATTAAAATAGAATTACC+AGG + chr4_1:6053550-6053569 Msa0531990:intron 15.0%
!!! GAAATGAAACTTTTTTTTAA+GGG + chr4_1:6053588-6053607 Msa0531990:intron 15.0%
!!! AAATGAAACTTTTTTTTAAG+GGG + chr4_1:6053589-6053608 Msa0531990:intron 15.0%
!!! AAAATTGGTTACTATTTTAT+AGG - chr4_1:6053786-6053805 None:intergenic 15.0%
!!! TATAAAATAGTAACCAATTT+TGG + chr4_1:6053785-6053804 Msa0531990:intron 15.0%
!!! TTATATTTTGGCTTATTATA+TGG + chr4_1:6054851-6054870 Msa0531990:intron 15.0%
!!! ATGATGTTTGTTTCTATTTT+TGG + chr4_1:6049389-6049408 Msa0531990:intron 20.0%
!! TATACTAAAATAACTGTACA+TGG + chr4_1:6049779-6049798 Msa0531990:intron 20.0%
!!! GAAATTAAGTTTTCAAAAAG+AGG - chr4_1:6049973-6049992 None:intergenic 20.0%
!! CTTTATAATACTTCTACATA+TGG - chr4_1:6050173-6050192 None:intergenic 20.0%
!! TTTGTATAATACTCAGAATT+TGG - chr4_1:6050625-6050644 None:intergenic 20.0%
!! TTATACAAATACATCTAACT+TGG + chr4_1:6050636-6050655 Msa0531990:CDS 20.0%
!! TATACAAATACATCTAACTT+GGG + chr4_1:6050637-6050656 Msa0531990:CDS 20.0%
!!! ATATGATGATAATTTGTACA+AGG + chr4_1:6050804-6050823 Msa0531990:CDS 20.0%
!! TTCTATAACTTAGATATTTC+TGG - chr4_1:6051071-6051090 None:intergenic 20.0%
!! TAAGTTATAGAAATAGCATA+AGG + chr4_1:6051079-6051098 Msa0531990:intron 20.0%
!!! GGTGATATTATTATTTCTAT+TGG + chr4_1:6051131-6051150 Msa0531990:intron 20.0%
!! GCTCTTTAATTAACTAAAAT+TGG + chr4_1:6052082-6052101 Msa0531990:intron 20.0%
!! TAAATGATATAACTAGAGTT+TGG + chr4_1:6052109-6052128 Msa0531990:intron 20.0%
!! TTTGTTAAAATTTCTTTCTC+CGG + chr4_1:6052386-6052405 Msa0531990:intron 20.0%
!! TCTAACTTATATTGCTTTAT+AGG + chr4_1:6052656-6052675 Msa0531990:intron 20.0%
!! ATATAAGTTATGATATGTTC+TGG + chr4_1:6053155-6053174 Msa0531990:intron 20.0%
!!! GGAAATGAAACTTTTTTTTA+AGG + chr4_1:6053587-6053606 Msa0531990:intron 20.0%
!! TATATTGATACTTCCAAAAT+TGG - chr4_1:6053801-6053820 None:intergenic 20.0%
!!! TTTTATCCCAAATTTTGTTA+CGG + chr4_1:6053851-6053870 Msa0531990:intron 20.0%
!! AAGATTTATTAGAGTTAGTT+TGG - chr4_1:6054003-6054022 None:intergenic 20.0%
!! TCAATTATAATCATCTTTAC+TGG - chr4_1:6054028-6054047 None:intergenic 20.0%
!! TAACTTATCATATTAGCAAA+AGG - chr4_1:6054280-6054299 None:intergenic 20.0%
!!! GAAATGCTATTTTTATATTG+TGG - chr4_1:6054400-6054419 None:intergenic 20.0%
!!! TCATATGACTTGTTATATTT+TGG + chr4_1:6054839-6054858 Msa0531990:intron 20.0%
!! AGATGAGAAAAATGTAAAAT+GGG - chr4_1:6055450-6055469 None:intergenic 20.0%
!! AAGATGAGAAAAATGTAAAA+TGG - chr4_1:6055451-6055470 None:intergenic 20.0%
!! AAAAAGCTGTTAATAACATA+CGG - chr4_1:6055578-6055597 None:intergenic 20.0%
!!! AGTTACGATTGTTTCTTTTT+TGG + chr4_1:6048673-6048692 Msa0531990:five_prime_UTR 25.0%
!!! TTTTGTATTTGTTTAGGGTA+AGG + chr4_1:6049215-6049234 Msa0531990:intron 25.0%
!!! AAGACTTTTTTACACTAAAG+TGG - chr4_1:6049464-6049483 None:intergenic 25.0%
!! TCCATTTTCTTTCTTAAACA+CGG - chr4_1:6049653-6049672 None:intergenic 25.0%
! GGATAAAAACTAAATTCTTG+TGG + chr4_1:6049809-6049828 Msa0531990:intron 25.0%
!!! ATTTTCAAGCCATATAGAAA+CGG - chr4_1:6049889-6049908 None:intergenic 25.0%
!! TTATTCTTATCTAAAACAGC+TGG + chr4_1:6050008-6050027 Msa0531990:intron 25.0%
!!! TTAATTCTGTGGATTAGTTA+TGG + chr4_1:6050046-6050065 Msa0531990:intron 25.0%
!! AAATCAATAAATGCCCATTT+TGG + chr4_1:6050102-6050121 Msa0531990:intron 25.0%
! TTACATCTCATTTATCTTCA+GGG - chr4_1:6050130-6050149 None:intergenic 25.0%
! TTTACATCTCATTTATCTTC+AGG - chr4_1:6050131-6050150 None:intergenic 25.0%
!!! ACTAAACAGTATTGATATGA+AGG + chr4_1:6050202-6050221 Msa0531990:intron 25.0%
! TTACTGAAGCAAATAATGAA+TGG + chr4_1:6050479-6050498 Msa0531990:CDS 25.0%
! ATAATACTCAGAATTTGGAT+GGG - chr4_1:6050620-6050639 None:intergenic 25.0%
! TATAATACTCAGAATTTGGA+TGG - chr4_1:6050621-6050640 None:intergenic 25.0%
!!! TCATCAGATATAATTTTAGC+AGG - chr4_1:6050763-6050782 None:intergenic 25.0%
! ATTATATCTGATGATAATCC+AGG + chr4_1:6050769-6050788 Msa0531990:CDS 25.0%
!! AGCAAATTTTATGGAAAACA+TGG - chr4_1:6050912-6050931 None:intergenic 25.0%
! AGCGAATTTAATTCACATAA+TGG - chr4_1:6050965-6050984 None:intergenic 25.0%
!!! TTTTTAAAACCAACTACACA+TGG - chr4_1:6051029-6051048 None:intergenic 25.0%
!! TTTTAAACCATTCACACATA+CGG - chr4_1:6051184-6051203 None:intergenic 25.0%
!! CTATTTTATAACCACATACT+TGG - chr4_1:6051649-6051668 None:intergenic 25.0%
! CAAGTATGTGGTTATAAAAT+AGG + chr4_1:6051647-6051666 Msa0531990:intron 25.0%
!! CATTTTACTCTCTTAAGAAT+GGG - chr4_1:6052183-6052202 None:intergenic 25.0%
!!! TCTTTTTGATAGTAGAAAAC+TGG + chr4_1:6052224-6052243 Msa0531990:intron 25.0%
! GGTTATGTGATATATATGAT+TGG + chr4_1:6052355-6052374 Msa0531990:intron 25.0%
! TTGTTAAAATTTCTTTCTCC+GGG + chr4_1:6052387-6052406 Msa0531990:intron 25.0%
!! ATGTTTCATTCTTTTGGATT+GGG + chr4_1:6052410-6052429 Msa0531990:intron 25.0%
! TGTCCCATTACATTATATTA+TGG + chr4_1:6052531-6052550 Msa0531990:intron 25.0%
! GCACCATAATATAATGTAAT+GGG - chr4_1:6052537-6052556 None:intergenic 25.0%
! TGCACCATAATATAATGTAA+TGG - chr4_1:6052538-6052557 None:intergenic 25.0%
! TATTAACAAGCTATTGAAAG+AGG + chr4_1:6052869-6052888 Msa0531990:intron 25.0%
! TTCTTACCCAAATAATGTTA+TGG + chr4_1:6052938-6052957 Msa0531990:intron 25.0%
! TGAACTCCATAACATTATTT+GGG - chr4_1:6052947-6052966 None:intergenic 25.0%
! ATGAACTCCATAACATTATT+TGG - chr4_1:6052948-6052967 None:intergenic 25.0%
! CAATTGTTAACCAGAATTAT+CGG - chr4_1:6052999-6053018 None:intergenic 25.0%
! AGTACTGCAAAAATATAGTT+GGG - chr4_1:6053699-6053718 None:intergenic 25.0%
! TAGTACTGCAAAAATATAGT+TGG - chr4_1:6053700-6053719 None:intergenic 25.0%
!! TTTATCCCAAATTTTGTTAC+GGG + chr4_1:6053852-6053871 Msa0531990:intron 25.0%
! TACATATACACAAACAATGT+TGG - chr4_1:6053942-6053961 None:intergenic 25.0%
!!! AGTTTTAACCCCTTTTTTTA+AGG + chr4_1:6053972-6053991 Msa0531990:intron 25.0%
!!! GTTTTAACCCCTTTTTTTAA+GGG + chr4_1:6053973-6053992 Msa0531990:intron 25.0%
!!! GACATAGTTTAGTTTTAAGT+TGG + chr4_1:6054046-6054065 Msa0531990:intron 25.0%
!!! ATTTTTTTTTGTCAAGATGC+AGG + chr4_1:6054126-6054145 Msa0531990:intron 25.0%
! ATGATTGTTATCCTTATACT+GGG - chr4_1:6054566-6054585 None:intergenic 25.0%
! TATGATTGTTATCCTTATAC+TGG - chr4_1:6054567-6054586 None:intergenic 25.0%
!! TCAACTTTAATCAAGCATTT+TGG - chr4_1:6054625-6054644 None:intergenic 25.0%
! TTAGAGAAGAAAGATTAACA+GGG - chr4_1:6054655-6054674 None:intergenic 25.0%
!! TCTTTATGTCATGTTCTTTT+TGG + chr4_1:6054767-6054786 Msa0531990:intron 25.0%
!!! ATTTTGGCTTATTATATGGA+AGG + chr4_1:6054855-6054874 Msa0531990:intron 25.0%
! GAGAATGGTAGAAATTATTA+GGG - chr4_1:6055071-6055090 None:intergenic 25.0%
! TGAGAATGGTAGAAATTATT+AGG - chr4_1:6055072-6055091 None:intergenic 25.0%
! ATGTTAAATGTACCATTGTT+TGG + chr4_1:6055294-6055313 Msa0531990:three_prime_UTR 25.0%
!!! AAAGAGTATTGTTGTAATAC+AGG - chr4_1:6055425-6055444 None:intergenic 25.0%
! TAATGATGACCAAGAATAAA+AGG - chr4_1:6055514-6055533 None:intergenic 25.0%
! GTAGAGATAAGTATTGTGAT+CGG + chr4_1:6048739-6048758 Msa0531990:five_prime_UTR 30.0%
CAAACGAGAAAAGAAAAAAG+AGG + chr4_1:6049104-6049123 Msa0531990:CDS 30.0%
AATTATAATATACCGAGTCG+CGG + chr4_1:6049267-6049286 Msa0531990:CDS 30.0%
ACATACCATTGTTACTGAAT+TGG - chr4_1:6049356-6049375 None:intergenic 30.0%
AATGGTATGTATTTCGAATC+TGG + chr4_1:6049366-6049385 Msa0531990:intron 30.0%
AAAGTCATCAAATCGTTTCT+TGG - chr4_1:6049546-6049565 None:intergenic 30.0%
!! TTAATTTTCGCCGTTGTTTT+TGG + chr4_1:6049596-6049615 Msa0531990:intron 30.0%
AGTCTGATTTCCAAAAACAA+CGG - chr4_1:6049609-6049628 None:intergenic 30.0%
!!! TGTTTTTGGAAATCAGACTA+TGG + chr4_1:6049610-6049629 Msa0531990:intron 30.0%
! CCATTTTCTTTCTTAAACAC+GGG - chr4_1:6049652-6049671 None:intergenic 30.0%
! TGATGGACAATAATGTAAAC+AGG + chr4_1:6049716-6049735 Msa0531990:CDS 30.0%
AAAGATAAATACCTCCAAGA+TGG - chr4_1:6049748-6049767 None:intergenic 30.0%
CTAAAATAACTGTACATGGT+TGG + chr4_1:6049783-6049802 Msa0531990:intron 30.0%
TAAATCTAGCCGTTTCTATA+TGG + chr4_1:6049877-6049896 Msa0531990:intron 30.0%
AAAATCCGATGCTATTGAAA+AGG + chr4_1:6049904-6049923 Msa0531990:intron 30.0%
AAATCCGATGCTATTGAAAA+GGG + chr4_1:6049905-6049924 Msa0531990:intron 30.0%
!!! AACTTGCTTTTGGGATAAAT+TGG - chr4_1:6049936-6049955 None:intergenic 30.0%
AATTTATCCCAAAAGCAAGT+TGG + chr4_1:6049935-6049954 Msa0531990:intron 30.0%
TACATCTCATTTATCTTCAG+GGG - chr4_1:6050129-6050148 None:intergenic 30.0%
ATACTTCTACATATGGAAGA+GGG - chr4_1:6050166-6050185 None:intergenic 30.0%
AATACTTCTACATATGGAAG+AGG - chr4_1:6050167-6050186 None:intergenic 30.0%
ACTGCAACAGAATTGAATAA+TGG - chr4_1:6050245-6050264 None:intergenic 30.0%
TGATCATGTAATTGAAGTGA+TGG + chr4_1:6050937-6050956 Msa0531990:intron 30.0%
GTATGTGTGAATGGTTTAAA+AGG + chr4_1:6051183-6051202 Msa0531990:intron 30.0%
ATATTCCTTTCAGCTGAAAA+TGG + chr4_1:6051354-6051373 Msa0531990:intron 30.0%
! GATCCTGTTTGTTAAAAACT+AGG + chr4_1:6052133-6052152 Msa0531990:intron 30.0%
!! TGACCTAGTTTTTAACAAAC+AGG - chr4_1:6052139-6052158 None:intergenic 30.0%
! CCATTTTACTCTCTTAAGAA+TGG - chr4_1:6052184-6052203 None:intergenic 30.0%
CCATTCTTAAGAGAGTAAAA+TGG + chr4_1:6052181-6052200 Msa0531990:intron 30.0%
! GATGTTTCATTCTTTTGGAT+TGG + chr4_1:6052409-6052428 Msa0531990:intron 30.0%
GAGTTCATGTGTACATTAAA+GGG + chr4_1:6052960-6052979 Msa0531990:intron 30.0%
TATGATGCACAAATACGATA+CGG + chr4_1:6053111-6053130 Msa0531990:intron 30.0%
AAAAAAAGTTTCATTTCCCC+TGG - chr4_1:6053585-6053604 None:intergenic 30.0%
GAATACCCGTAACAAAATTT+GGG - chr4_1:6053860-6053879 None:intergenic 30.0%
GAAATAGCAAAGTGAATCAA+AGG + chr4_1:6053880-6053899 Msa0531990:intron 30.0%
AATCAAAGGAATGTTCTTAG+AGG + chr4_1:6053894-6053913 Msa0531990:intron 30.0%
ATCAAAGGAATGTTCTTAGA+GGG + chr4_1:6053895-6053914 Msa0531990:intron 30.0%
!! AGTTGGTGTCTTGATTTTAT+TGG + chr4_1:6054063-6054082 Msa0531990:intron 30.0%
!!! TGTCTTGATTTTATTGGTTC+AGG + chr4_1:6054069-6054088 Msa0531990:intron 30.0%
!!! GTCTTGATTTTATTGGTTCA+GGG + chr4_1:6054070-6054089 Msa0531990:intron 30.0%
! CTTTAATCAAGCATTTTGGA+AGG - chr4_1:6054621-6054640 None:intergenic 30.0%
CTTAGAGAAGAAAGATTAAC+AGG - chr4_1:6054656-6054675 None:intergenic 30.0%
TACATTTAACATTAGACCGT+GGG - chr4_1:6055286-6055305 None:intergenic 30.0%
! TATATGGCTCCTTTTATTCT+TGG + chr4_1:6055502-6055521 Msa0531990:three_prime_UTR 30.0%
AGAGATAGAAAACACGAAGA+GGG + chr4_1:6048650-6048669 Msa0531990:five_prime_UTR 35.0%
AGTTAGTGATGAGAGAGAAA+GGG - chr4_1:6049003-6049022 None:intergenic 35.0%
TAGTTAGTGATGAGAGAGAA+AGG - chr4_1:6049004-6049023 None:intergenic 35.0%
! TCTTGTAGATCCTTTTCATG+AGG + chr4_1:6049074-6049093 Msa0531990:intron 35.0%
TTGCTCTTAACCTCATGAAA+AGG - chr4_1:6049087-6049106 None:intergenic 35.0%
TCGAACCAATTCAGTAACAA+TGG + chr4_1:6049348-6049367 Msa0531990:CDS 35.0%
CCCGTGTTTAAGAAAGAAAA+TGG + chr4_1:6049649-6049668 Msa0531990:CDS 35.0%
TCTTGTGGTTATGATGTGTT+TGG + chr4_1:6049824-6049843 Msa0531990:intron 35.0%
!!! TTGCTTTTGGGATAAATTGG+AGG - chr4_1:6049933-6049952 None:intergenic 35.0%
TATTGATATGAAGGCCAAGA+TGG + chr4_1:6050211-6050230 Msa0531990:intron 35.0%
TGAACATTGGGTTCAATAGA+AGG - chr4_1:6050505-6050524 None:intergenic 35.0%
TCATCACTCTGTTGAACATT+GGG - chr4_1:6050517-6050536 None:intergenic 35.0%
TTCATCACTCTGTTGAACAT+TGG - chr4_1:6050518-6050537 None:intergenic 35.0%
ATGTTCAACAGAGTGATGAA+TGG + chr4_1:6050518-6050537 Msa0531990:CDS 35.0%
TCATCACTCTGTTGAACATT+GGG - chr4_1:6050517-6050536 None:intergenic 35.0%
TTCATCACTCTGTTGAACAT+TGG - chr4_1:6050518-6050537 None:intergenic 35.0%
ATGTTCAACAGAGTGATGAA+TGG + chr4_1:6050518-6050537 Msa0531990:CDS 35.0%
! ATCCATTTGTTGAGTCAATC+TGG + chr4_1:6051110-6051129 Msa0531990:intron 35.0%
! CAATTAGAAAGCATACACAC+AGG - chr4_1:6051234-6051253 None:intergenic 35.0%
! AAACACCATTTTCAGCTGAA+AGG - chr4_1:6051362-6051381 None:intergenic 35.0%
TGAAAATGGTGTTTCATCAG+TGG + chr4_1:6051368-6051387 Msa0531990:CDS 35.0%
AATTTACACACAGATGAGCA+AGG + chr4_1:6051411-6051430 Msa0531990:CDS 35.0%
ATTTACACACAGATGAGCAA+GGG + chr4_1:6051412-6051431 Msa0531990:CDS 35.0%
!! GAAACAGTGGCATTTTGTTT+TGG - chr4_1:6051534-6051553 None:intergenic 35.0%
AAACAAAATGCCACTGTTTC+TGG + chr4_1:6051534-6051553 Msa0531990:CDS 35.0%
! TCCTCCAAGTTACTTTGTAA+GGG - chr4_1:6051582-6051601 None:intergenic 35.0%
CTACTGATGTTTCAGCAATT+GGG + chr4_1:6051613-6051632 Msa0531990:CDS 35.0%
! ATATGCAACTTCTGGTTGTT+GGG - chr4_1:6051938-6051957 None:intergenic 35.0%
ATTACCATTACACTGGAGAA+GGG - chr4_1:6052000-6052019 None:intergenic 35.0%
!! TGCATTGGTCTGTTAGATTT+TGG + chr4_1:6052019-6052038 Msa0531990:intron 35.0%
! TTTAAAGCTGGTGTCTAGTT+TGG + chr4_1:6052060-6052079 Msa0531990:intron 35.0%
GTTAAAAACTAGGTCATCGT+TGG + chr4_1:6052143-6052162 Msa0531990:intron 35.0%
TCCAAAAGAATGAAACATCC+CGG - chr4_1:6052408-6052427 None:intergenic 35.0%
TAAGGAAAGGGTTTGTATAC+AGG - chr4_1:6052492-6052511 None:intergenic 35.0%
GGAGTTCATGTGTACATTAA+AGG + chr4_1:6052959-6052978 Msa0531990:intron 35.0%
AGAAATTTGCATTCCCTTAG+CGG - chr4_1:6053045-6053064 None:intergenic 35.0%
ACTGAGCTACACAAAATCTA+GGG - chr4_1:6053068-6053087 None:intergenic 35.0%
GTATCGTATTTGTGCATCAT+AGG - chr4_1:6053112-6053131 None:intergenic 35.0%
ATGATGCACAAATACGATAC+GGG + chr4_1:6053112-6053131 Msa0531990:intron 35.0%
GGCAAAAAGTTTCTCTTGTT+CGG + chr4_1:6053668-6053687 Msa0531990:intron 35.0%
GTAGATGACTAGCATTTATC+AGG - chr4_1:6053736-6053755 None:intergenic 35.0%
ATAAATGCTAGTCATCTACG+AGG + chr4_1:6053737-6053756 Msa0531990:intron 35.0%
TAAATGCTAGTCATCTACGA+GGG + chr4_1:6053738-6053757 Msa0531990:intron 35.0%
CGAATACCCGTAACAAAATT+TGG - chr4_1:6053861-6053880 None:intergenic 35.0%
TCAAAGGAATGTTCTTAGAG+GGG + chr4_1:6053896-6053915 Msa0531990:intron 35.0%
TTGGCGTACCCTTAAAAAAA+GGG - chr4_1:6053984-6054003 None:intergenic 35.0%
TTTGGCGTACCCTTAAAAAA+AGG - chr4_1:6053985-6054004 None:intergenic 35.0%
!!! ATTTTATTGGTTCAGGGAGA+GGG + chr4_1:6054076-6054095 Msa0531990:intron 35.0%
! ATACCATCTGGATATGGTTT+TGG + chr4_1:6054448-6054467 Msa0531990:CDS 35.0%
ATCCAATGGTTGTACTAGTA+GGG - chr4_1:6054525-6054544 None:intergenic 35.0%
TATCCAATGGTTGTACTAGT+AGG - chr4_1:6054526-6054545 None:intergenic 35.0%
TATCACGTCATCATATCCAA+TGG - chr4_1:6054539-6054558 None:intergenic 35.0%
TCATATGATTTCACTTCAGC+AGG + chr4_1:6054582-6054601 Msa0531990:CDS 35.0%
TTTACATTACAATGGCTGCA+TGG - chr4_1:6054707-6054726 None:intergenic 35.0%
GCCATTGTAATGTAAACAGA+CGG + chr4_1:6054711-6054730 Msa0531990:intron 35.0%
CCATTGTAATGTAAACAGAC+GGG + chr4_1:6054712-6054731 Msa0531990:intron 35.0%
AGACAACTAAATGAAGCACA+TGG - chr4_1:6054750-6054769 None:intergenic 35.0%
!! ATGTCATGTTCTTTTTGGCA+AGG + chr4_1:6054772-6054791 Msa0531990:intron 35.0%
AGAATGAGAACAATCCTATG+TGG + chr4_1:6054905-6054924 Msa0531990:intron 35.0%
GAATGAGAACAATCCTATGT+GGG + chr4_1:6054906-6054925 Msa0531990:intron 35.0%
AATTTCTACCATTCTCAGAG+TGG + chr4_1:6055075-6055094 Msa0531990:CDS 35.0%
ATTTCTACCATTCTCAGAGT+GGG + chr4_1:6055076-6055095 Msa0531990:CDS 35.0%
!! GTTTTGCCACAATTGTTGTT+GGG - chr4_1:6055178-6055197 None:intergenic 35.0%
! TGTTTTGCCACAATTGTTGT+TGG - chr4_1:6055179-6055198 None:intergenic 35.0%
ACATCAAGACCCTTAAAAAC+CGG - chr4_1:6055223-6055242 None:intergenic 35.0%
GAAAATGACCAATCAATACG+AGG + chr4_1:6055256-6055275 Msa0531990:three_prime_UTR 35.0%
GTACATTTAACATTAGACCG+TGG - chr4_1:6055287-6055306 None:intergenic 35.0%
AATACAACTACTGTCACATG+GGG - chr4_1:6055347-6055366 None:intergenic 35.0%
GAATACAACTACTGTCACAT+GGG - chr4_1:6055348-6055367 None:intergenic 35.0%
AGAATACAACTACTGTCACA+TGG - chr4_1:6055349-6055368 None:intergenic 35.0%
TGTTAATAACATACGGACGA+TGG - chr4_1:6055571-6055590 None:intergenic 35.0%
TTCTATCTCTCTCTCTCTCT+CGG - chr4_1:6048640-6048659 None:intergenic 40.0%
GAGAGATAGAAAACACGAAG+AGG + chr4_1:6048649-6048668 Msa0531990:five_prime_UTR 40.0%
! TAAGTATTGTGATCGGAGTG+CGG + chr4_1:6048746-6048765 Msa0531990:five_prime_UTR 40.0%
AGGTACATCATCATCGTTGT+CGG + chr4_1:6048827-6048846 Msa0531990:CDS 40.0%
! CATGTTACAGTCTTTGAGAG+TGG - chr4_1:6048931-6048950 None:intergenic 40.0%
CACTCTCAAAGACTGTAACA+TGG + chr4_1:6048929-6048948 Msa0531990:CDS 40.0%
GTTAGTCGTCTTCTTTCTCA+AGG + chr4_1:6048966-6048985 Msa0531990:CDS 40.0%
TCTCTCATCACTAACTAGTC+AGG + chr4_1:6049007-6049026 Msa0531990:intron 40.0%
CTCTCATCACTAACTAGTCA+GGG + chr4_1:6049008-6049027 Msa0531990:intron 40.0%
GTAAGGATACAACAGAACCA+AGG + chr4_1:6049232-6049251 Msa0531990:CDS 40.0%
GTCTTATGCATCTAGTGTGA+TGG + chr4_1:6049699-6049718 Msa0531990:CDS 40.0%
GATAAATACCTCCAAGATGG+TGG - chr4_1:6049745-6049764 None:intergenic 40.0%
ATAACTGTACATGGTTGGAG+TGG + chr4_1:6049788-6049807 Msa0531990:intron 40.0%
! GGAACCCTTTTCAATAGCAT+CGG - chr4_1:6049912-6049931 None:intergenic 40.0%
!! TTGACAGCCAACTTGCTTTT+GGG - chr4_1:6049945-6049964 None:intergenic 40.0%
!! TTTGACAGCCAACTTGCTTT+TGG - chr4_1:6049946-6049965 None:intergenic 40.0%
!! CTCTGTGCTGATTAATTCTG+TGG + chr4_1:6050035-6050054 Msa0531990:intron 40.0%
TATCTTCAGGGGACCAAAAT+GGG - chr4_1:6050118-6050137 None:intergenic 40.0%
TTATCTTCAGGGGACCAAAA+TGG - chr4_1:6050119-6050138 None:intergenic 40.0%
TAATGGTGAAACAGCCATCT+TGG - chr4_1:6050228-6050247 None:intergenic 40.0%
TTCTGTTGCAGTGATTCTGT+TGG + chr4_1:6050253-6050272 Msa0531990:intron 40.0%
CTGTCTTCATCATCACATCA+TGG + chr4_1:6050289-6050308 Msa0531990:CDS 40.0%
TCTTCATCATCACATCATGG+TGG + chr4_1:6050292-6050311 Msa0531990:CDS 40.0%
AATGGCTGACATTGTCAAGA+TGG + chr4_1:6050354-6050373 Msa0531990:CDS 40.0%
ATGGCTGACATTGTCAAGAT+GGG + chr4_1:6050355-6050374 Msa0531990:CDS 40.0%
CTAAATCTTCTGTCCACAGT+GGG + chr4_1:6050404-6050423 Msa0531990:CDS 40.0%
!! AACATTCAAGTTGTGATGCG+AGG - chr4_1:6050461-6050480 None:intergenic 40.0%
TGAACATTGGGGTCAATAGA+AGG - chr4_1:6050544-6050563 None:intergenic 40.0%
CATCACTCTGTTGAACATTG+GGG - chr4_1:6050516-6050535 None:intergenic 40.0%
CATCAACAACAACTGTTGGT+GGG - chr4_1:6050597-6050616 None:intergenic 40.0%
AATAGACAACTGCAGAACCA+CGG + chr4_1:6050667-6050686 Msa0531990:CDS 40.0%
CAGCTACAAATTCATTTCCG+TGG - chr4_1:6050687-6050706 None:intergenic 40.0%
GATGAGAATCCTGTTGATGT+TGG + chr4_1:6050724-6050743 Msa0531990:CDS 40.0%
!! CATCCTTTTGATGACAACGA+AGG + chr4_1:6050853-6050872 Msa0531990:CDS 40.0%
TCACCTTCGTTGTCATCAAA+AGG - chr4_1:6050859-6050878 None:intergenic 40.0%
ATGGTTGTTCCATGTGTAGT+TGG + chr4_1:6051017-6051036 Msa0531990:intron 40.0%
! CACCAGATTGACTCAACAAA+TGG - chr4_1:6051115-6051134 None:intergenic 40.0%
TCTAACTCCGTATGTGTGAA+TGG + chr4_1:6051174-6051193 Msa0531990:intron 40.0%
AAAGCATACACACAGGTACA+TGG - chr4_1:6051227-6051246 None:intergenic 40.0%
ACATGTGCCTTACATACATG+TGG + chr4_1:6051308-6051327 Msa0531990:intron 40.0%
TCAGAGACCACATGTATGTA+AGG - chr4_1:6051318-6051337 None:intergenic 40.0%
GGTCTCTGAGTCTTAATTTC+TGG + chr4_1:6051329-6051348 Msa0531990:intron 40.0%
GTATGGAGTTGTAGGTGATT+TGG - chr4_1:6051474-6051493 None:intergenic 40.0%
!! GACTAAAACACTCTGGAGTA+TGG - chr4_1:6051491-6051510 None:intergenic 40.0%
AAGCTCAGACTAAAACACTC+TGG - chr4_1:6051498-6051517 None:intergenic 40.0%
!!! GAGTGTTTTAGTCTGAGCTT+TGG + chr4_1:6051498-6051517 Msa0531990:CDS 40.0%
!!! AGTCTGAGCTTTGGAAGTTT+TGG + chr4_1:6051507-6051526 Msa0531990:CDS 40.0%
TAGGCCCTTACAAAGTAACT+TGG + chr4_1:6051575-6051594 Msa0531990:CDS 40.0%
! CTCCTCCAAGTTACTTTGTA+AGG - chr4_1:6051583-6051602 None:intergenic 40.0%
GCTACTGATGTTTCAGCAAT+TGG + chr4_1:6051612-6051631 Msa0531990:CDS 40.0%
TGCAGAAATCCCGACTATTA+TGG + chr4_1:6051730-6051749 Msa0531990:intron 40.0%
GCAGAAATCCCGACTATTAT+GGG + chr4_1:6051731-6051750 Msa0531990:intron 40.0%
CAGAAATCCCGACTATTATG+GGG + chr4_1:6051732-6051751 Msa0531990:intron 40.0%
ATGCTCATCCCCATAATAGT+CGG - chr4_1:6051743-6051762 None:intergenic 40.0%
CATATTGCTACTACCTCAGA+TGG + chr4_1:6051760-6051779 Msa0531990:CDS 40.0%
GGCAATATATCCCACATAAC+TGG + chr4_1:6051781-6051800 Msa0531990:CDS 40.0%
TATATCCCACATAACTGGTG+TGG + chr4_1:6051786-6051805 Msa0531990:CDS 40.0%
TTCTTCCATTTCACAACCAG+AGG + chr4_1:6051828-6051847 Msa0531990:CDS 40.0%
TAAAGCCTCTGGTTGTGAAA+TGG - chr4_1:6051836-6051855 None:intergenic 40.0%
! TTTTCCTGAGCAGTTTCAGA+GGG - chr4_1:6051868-6051887 None:intergenic 40.0%
! ATTTTCCTGAGCAGTTTCAG+AGG - chr4_1:6051869-6051888 None:intergenic 40.0%
GTAAACTCATGCGAAGATGA+AGG - chr4_1:6051904-6051923 None:intergenic 40.0%
! GATATGCAACTTCTGGTTGT+TGG - chr4_1:6051939-6051958 None:intergenic 40.0%
GAATGAGGATATGCAACTTC+TGG - chr4_1:6051946-6051965 None:intergenic 40.0%
CATTACCATTACACTGGAGA+AGG - chr4_1:6052001-6052020 None:intergenic 40.0%
CCAATGCATTACCATTACAC+TGG - chr4_1:6052007-6052026 None:intergenic 40.0%
! CCAGTGTAATGGTAATGCAT+TGG + chr4_1:6052004-6052023 Msa0531990:intron 40.0%
CTTATTACGCGGTTTCACAT+TGG - chr4_1:6052326-6052345 None:intergenic 40.0%
TGAAACCGCGTAATAAGCTA+GGG + chr4_1:6052329-6052348 Msa0531990:intron 40.0%
! TCCGGGATGTTTCATTCTTT+TGG + chr4_1:6052404-6052423 Msa0531990:intron 40.0%
!! TTCTTTTGGATTGGGTGATG+TGG + chr4_1:6052418-6052437 Msa0531990:intron 40.0%
!! TCTTTTGGATTGGGTGATGT+GGG + chr4_1:6052419-6052438 Msa0531990:intron 40.0%
CTGTCGTGTGGTAATAACAT+AGG + chr4_1:6052568-6052587 Msa0531990:intron 40.0%
TTCAACGGTTCAAACACCAA+GGG + chr4_1:6052713-6052732 Msa0531990:CDS 40.0%
ATTGCTTGTGTAACAGGGAA+GGG - chr4_1:6052756-6052775 None:intergenic 40.0%
GCCTGCAAAATATAGCAACA+TGG + chr4_1:6052776-6052795 Msa0531990:CDS 40.0%
! GCCATGTTGCTATATTTTGC+AGG - chr4_1:6052780-6052799 None:intergenic 40.0%
AGCAACATGGCTTCTTCAAT+TGG + chr4_1:6052789-6052808 Msa0531990:CDS 40.0%
AACATGGCTTCTTCAATTGG+TGG + chr4_1:6052792-6052811 Msa0531990:CDS 40.0%
TTCCACGATAAACATGTCAG+AGG + chr4_1:6052815-6052834 Msa0531990:CDS 40.0%
TACCTCTGACATGTTTATCG+TGG - chr4_1:6052820-6052839 None:intergenic 40.0%
CACTGAGCTACACAAAATCT+AGG - chr4_1:6053069-6053088 None:intergenic 40.0%
! GATTTTGTGTAGCTCAGTGT+TGG + chr4_1:6053070-6053089 Msa0531990:intron 40.0%
TGATGCACAAATACGATACG+GGG + chr4_1:6053113-6053132 Msa0531990:intron 40.0%
AAAAGTTTCATTTCCCCTGG+AGG - chr4_1:6053582-6053601 None:intergenic 40.0%
GGGAAATGAAACTCGATATG+AGG + chr4_1:6053609-6053628 Msa0531990:intron 40.0%
AAATGACGAACGAAAGCTGA+AGG + chr4_1:6053632-6053651 Msa0531990:intron 40.0%
TGGCGTACCCTTAAAAAAAG+GGG - chr4_1:6053983-6054002 None:intergenic 40.0%
!!! GATTTTATTGGTTCAGGGAG+AGG + chr4_1:6054075-6054094 Msa0531990:intron 40.0%
TTGTCAAGATGCAGGCTTTA+AGG + chr4_1:6054134-6054153 Msa0531990:intron 40.0%
! TGTCAAGATGCAGGCTTTAA+GGG + chr4_1:6054135-6054154 Msa0531990:intron 40.0%
!! TGTTGATTAGGTTGAGCTTG+AGG - chr4_1:6054178-6054197 None:intergenic 40.0%
! CCAGGCAAAGATTGTTGATT+AGG - chr4_1:6054190-6054209 None:intergenic 40.0%
CCTAATCAACAATCTTTGCC+TGG + chr4_1:6054187-6054206 Msa0531990:CDS 40.0%
CTTCCAAAACCATATCCAGA+TGG - chr4_1:6054454-6054473 None:intergenic 40.0%
TTCAAAGGATAGTTTCCACC+AGG - chr4_1:6054490-6054509 None:intergenic 40.0%
TCCAATGGTTGTACTAGTAG+GGG - chr4_1:6054524-6054543 None:intergenic 40.0%
CGTGATAAACTCCCAGTATA+AGG + chr4_1:6054552-6054571 Msa0531990:CDS 40.0%
CCCGTCTGTTTACATTACAA+TGG - chr4_1:6054715-6054734 None:intergenic 40.0%
! TTTCTTTTCCTAACCACCAC+TGG - chr4_1:6054808-6054827 None:intergenic 40.0%
AACAATCCTATGTGGGTTCA+AGG + chr4_1:6054913-6054932 Msa0531990:CDS 40.0%
ACAATCCTATGTGGGTTCAA+GGG + chr4_1:6054914-6054933 Msa0531990:CDS 40.0%
CAGAATCAACAACAACAACC+AGG + chr4_1:6054991-6055010 Msa0531990:CDS 40.0%
! AAATTATTAGGGTACCCGTG+CGG - chr4_1:6055060-6055079 None:intergenic 40.0%
! AATTGTTGTTGGGACTGCTT+AGG - chr4_1:6055168-6055187 None:intergenic 40.0%
TACTAATCCTAATCACCTCC+CGG + chr4_1:6055201-6055220 Msa0531990:exon 40.0%
TTAAAAACCGGGAGGTGATT+AGG - chr4_1:6055211-6055230 None:intergenic 40.0%
! TAATCACCTCCCGGTTTTTA+AGG + chr4_1:6055210-6055229 Msa0531990:three_prime_UTR 40.0%
! AATCACCTCCCGGTTTTTAA+GGG + chr4_1:6055211-6055230 Msa0531990:three_prime_UTR 40.0%
CATCAAGACCCTTAAAAACC+GGG - chr4_1:6055222-6055241 None:intergenic 40.0%
ATACAACTACTGTCACATGG+GGG - chr4_1:6055346-6055365 None:intergenic 40.0%
TACGCTCGTGATGTTAACTT+AGG + chr4_1:6055379-6055398 Msa0531990:three_prime_UTR 40.0%
TCCGTGTTCTGTCTCATATA+TGG + chr4_1:6055486-6055505 Msa0531990:three_prime_UTR 40.0%
GCCATATATGAGACAGAACA+CGG - chr4_1:6055490-6055509 None:intergenic 40.0%
TAAGGATGAGCGGCAAAGTA+GGG + chr4_1:6048796-6048815 Msa0531990:exon 45.0%
GGTACATCATCATCGTTGTC+GGG + chr4_1:6048828-6048847 Msa0531990:CDS 45.0%
ATCATCGTTGTCGGGTATAC+CGG + chr4_1:6048836-6048855 Msa0531990:CDS 45.0%
GTGGCATAGATCTCGTTATC+AGG - chr4_1:6048912-6048931 None:intergenic 45.0%
GACGACTAACAGCTTCGTTA+GGG - chr4_1:6048956-6048975 None:intergenic 45.0%
AGACGACTAACAGCTTCGTT+AGG - chr4_1:6048957-6048976 None:intergenic 45.0%
TAATTACTCCCACGTGACCT+TGG - chr4_1:6049252-6049271 None:intergenic 45.0%
TATAATATACCGAGTCGCGG+CGG + chr4_1:6049270-6049289 Msa0531990:CDS 45.0%
TAAACACGGGTTTACTCTGC+TGG - chr4_1:6049639-6049658 None:intergenic 45.0%
GAAAATGGAACGCCTGCTTA+TGG + chr4_1:6049664-6049683 Msa0531990:CDS 45.0%
ACTAGATGCATAAGACGTGG+AGG - chr4_1:6049695-6049714 None:intergenic 45.0%
CACACTAGATGCATAAGACG+TGG - chr4_1:6049698-6049717 None:intergenic 45.0%
GGTTCCAATGTATCTCGCTA+TGG + chr4_1:6050067-6050086 Msa0531990:intron 45.0%
GATGCCATAGCGAGATACAT+TGG - chr4_1:6050074-6050093 None:intergenic 45.0%
! GATTCTGTTGGTGTCCATGA+CGG + chr4_1:6050265-6050284 Msa0531990:CDS 45.0%
ATGATGAAGACAGTCCGTCA+TGG - chr4_1:6050282-6050301 None:intergenic 45.0%
!! ATGGTGGATTGCAATCTGCA+TGG + chr4_1:6050308-6050327 Msa0531990:CDS 45.0%
TGGATTGCAATCTGCATGGT+CGG + chr4_1:6050312-6050331 Msa0531990:CDS 45.0%
CTGACATTGTCAAGATGGGT+AGG + chr4_1:6050359-6050378 Msa0531990:CDS 45.0%
GTGGACAGAAGATTTAGGCA+CGG - chr4_1:6050401-6050420 None:intergenic 45.0%
CCACTGTGGACAGAAGATTT+AGG - chr4_1:6050406-6050425 None:intergenic 45.0%
CCTAAATCTTCTGTCCACAG+TGG + chr4_1:6050403-6050422 Msa0531990:CDS 45.0%
CATTCTGATGATTCCCACTG+TGG - chr4_1:6050420-6050439 None:intergenic 45.0%
GCATCAACAACAACTGTTGG+TGG - chr4_1:6050598-6050617 None:intergenic 45.0%
TGGGCATCAACAACAACTGT+TGG - chr4_1:6050601-6050620 None:intergenic 45.0%
AGCTGAAGACAGTTCTGTTG+AGG + chr4_1:6050702-6050721 Msa0531990:CDS 45.0%
GAAGCAGATCCAACATCAAC+AGG - chr4_1:6050736-6050755 None:intergenic 45.0%
GATAATCCAGGAACTGCTTC+TGG + chr4_1:6050781-6050800 Msa0531990:CDS 45.0%
TCATATCCAGAAGCAGTTCC+TGG - chr4_1:6050790-6050809 None:intergenic 45.0%
CAAAAGGATGTCGATGAGAC+TGG - chr4_1:6050843-6050862 None:intergenic 45.0%
ACATCAGAATTGTCCTCCTC+TGG - chr4_1:6051444-6051463 None:intergenic 45.0%
!! ACTCTGGAGTATGGAGTTGT+AGG - chr4_1:6051482-6051501 None:intergenic 45.0%
GCCCTTACAAAGTAACTTGG+AGG + chr4_1:6051578-6051597 Msa0531990:CDS 45.0%
AGTAACTTGGAGGAGACTTC+TGG + chr4_1:6051588-6051607 Msa0531990:CDS 45.0%
AACCACATACTTGGCATCTG+AGG - chr4_1:6051640-6051659 None:intergenic 45.0%
TGCTCATCCCCATAATAGTC+GGG - chr4_1:6051742-6051761 None:intergenic 45.0%
GTGGGATATATTGCCATCTG+AGG - chr4_1:6051776-6051795 None:intergenic 45.0%
AGCATCCACACCAGTTATGT+GGG - chr4_1:6051794-6051813 None:intergenic 45.0%
TAGCATCCACACCAGTTATG+TGG - chr4_1:6051795-6051814 None:intergenic 45.0%
ACATAACTGGTGTGGATGCT+AGG + chr4_1:6051794-6051813 Msa0531990:CDS 45.0%
!! GGTTCAGACTTTAAAGCCTC+TGG - chr4_1:6051847-6051866 None:intergenic 45.0%
! TGTGAGCTTGCTTGTGAATG+AGG - chr4_1:6051961-6051980 None:intergenic 45.0%
TTACACTGGAGAAGGGAGAT+AGG - chr4_1:6051993-6052012 None:intergenic 45.0%
ATCTCCCTTCTCCAGTGTAA+TGG + chr4_1:6051993-6052012 Msa0531990:CDS 45.0%
GTGAAACCGCGTAATAAGCT+AGG + chr4_1:6052328-6052347 Msa0531990:intron 45.0%
GAAACCGCGTAATAAGCTAG+GGG + chr4_1:6052330-6052349 Msa0531990:intron 45.0%
TTCTTTGCCCAATGCTCTGT+TGG + chr4_1:6052689-6052708 Msa0531990:CDS 45.0%
! GTTGAAGCCAACAGAGCATT+GGG - chr4_1:6052699-6052718 None:intergenic 45.0%
!! CAATGCTCTGTTGGCTTCAA+CGG + chr4_1:6052698-6052717 Msa0531990:CDS 45.0%
CTTCAACGGTTCAAACACCA+AGG + chr4_1:6052712-6052731 Msa0531990:CDS 45.0%
TAACAGGGAAGGGTGAGTAT+GGG - chr4_1:6052746-6052765 None:intergenic 45.0%
CATTGCTTGTGTAACAGGGA+AGG - chr4_1:6052757-6052776 None:intergenic 45.0%
! CAGGCATTGCTTGTGTAACA+GGG - chr4_1:6052761-6052780 None:intergenic 45.0%
CAGTTACACGCCGATAATTC+TGG + chr4_1:6052986-6053005 Msa0531990:intron 45.0%
AATGACAACCACATCCGCTA+AGG + chr4_1:6053028-6053047 Msa0531990:intron 45.0%
ATGACAACCACATCCGCTAA+GGG + chr4_1:6053029-6053048 Msa0531990:intron 45.0%
ACGAAAGCTGAAGGATAGAG+TGG + chr4_1:6053641-6053660 Msa0531990:intron 45.0%
AAGGAATGTTCTTAGAGGGG+AGG + chr4_1:6053899-6053918 Msa0531990:intron 45.0%
TGTTCTTAGAGGGGAGGTTA+TGG + chr4_1:6053905-6053924 Msa0531990:intron 45.0%
!! GTATAGCTCTGAGGCATGAA+CGG - chr4_1:6054304-6054323 None:intergenic 45.0%
GAGCTATACCTACATGCCAT+CGG + chr4_1:6054315-6054334 Msa0531990:CDS 45.0%
GCTGCTATACCATCTGGATA+TGG + chr4_1:6054442-6054461 Msa0531990:CDS 45.0%
ATAGTTTCCACCAGGAATGC+TGG - chr4_1:6054482-6054501 None:intergenic 45.0%
!! TAAACAGACGGGTTGACATG+TGG + chr4_1:6054723-6054742 Msa0531990:intron 45.0%
!! CTTTTTGGCAAGGAGATGCA+AGG + chr4_1:6054782-6054801 Msa0531990:intron 45.0%
ACTGACATTGTTCGAGAACC+AGG - chr4_1:6054940-6054959 None:intergenic 45.0%
TGGAAGCTGTAATACGTGCT+GGG - chr4_1:6054967-6054986 None:intergenic 45.0%
AGCACGTATTACAGCTTCCA+GGG + chr4_1:6054967-6054986 Msa0531990:CDS 45.0%
!! GTTGTTGTTGATTCTGTCCC+TGG - chr4_1:6054987-6055006 None:intergenic 45.0%
! GAGAAATCCCACTCTGAGAA+TGG - chr4_1:6055086-6055105 None:intergenic 45.0%
AGCAGTCCCAACAACAATTG+TGG + chr4_1:6055169-6055188 Msa0531990:CDS 45.0%
!!! TATAAATAGTTTTAATATAA+CGG + chr4_1:6052898-6052917 Msa0531990:intron 5.0%
GTAAGGATGAGCGGCAAAGT+AGG + chr4_1:6048795-6048814 Msa0531990:exon 50.0%
AAGGATGAGCGGCAAAGTAG+GGG + chr4_1:6048797-6048816 Msa0531990:exon 50.0%
ACAACAGAACCAAGGTCACG+TGG + chr4_1:6049240-6049259 Msa0531990:CDS 50.0%
CAACAGAACCAAGGTCACGT+GGG + chr4_1:6049241-6049260 Msa0531990:CDS 50.0%
! ACTGGTAGTGACCGATATGC+TGG + chr4_1:6049303-6049322 Msa0531990:CDS 50.0%
AATGGAACGCCTGCTTATGG+AGG + chr4_1:6049667-6049686 Msa0531990:CDS 50.0%
TAAACAGGCAGCCACCATCT+TGG + chr4_1:6049731-6049750 Msa0531990:CDS 50.0%
CAGCCATTGACACTTGACCT+GGG - chr4_1:6050342-6050361 None:intergenic 50.0%
TCAGCCATTGACACTTGACC+TGG - chr4_1:6050343-6050362 None:intergenic 50.0%
AGATTTAGGCACGGATGCCT+TGG - chr4_1:6050392-6050411 None:intergenic 50.0%
!! AATGCCACTGTTTCTGGAGC+CGG + chr4_1:6051540-6051559 Msa0531990:CDS 50.0%
GTCCTCAGATGCCAAGTATG+TGG + chr4_1:6051635-6051654 Msa0531990:intron 50.0%
!! TGAACCCTCTGAAACTGCTC+AGG + chr4_1:6051861-6051880 Msa0531990:CDS 50.0%
TGGAGAAGGGAGATAGGTTC+TGG - chr4_1:6051987-6052006 None:intergenic 50.0%
CCATCCCCTAGCTTATTACG+CGG - chr4_1:6052337-6052356 None:intergenic 50.0%
CAGAGATCACAACTGTCGTG+TGG + chr4_1:6052556-6052575 Msa0531990:intron 50.0%
CGTTGAAGCCAACAGAGCAT+TGG - chr4_1:6052700-6052719 None:intergenic 50.0%
AACGGTTCAAACACCAAGGG+AGG + chr4_1:6052716-6052735 Msa0531990:CDS 50.0%
GAGTATGGGATATCCTCCCT+TGG - chr4_1:6052732-6052751 None:intergenic 50.0%
GTAACAGGGAAGGGTGAGTA+TGG - chr4_1:6052747-6052766 None:intergenic 50.0%
! GCAGGCATTGCTTGTGTAAC+AGG - chr4_1:6052762-6052781 None:intergenic 50.0%
! TTGCATTCCCTTAGCGGATG+TGG - chr4_1:6053039-6053058 None:intergenic 50.0%
TACGGGGATGCGTCGTTTAT+TGG + chr4_1:6053129-6053148 Msa0531990:intron 50.0%
ATTACCAGGATAGCACCTCC+AGG + chr4_1:6053564-6053583 Msa0531990:intron 50.0%
TTACCAGGATAGCACCTCCA+GGG + chr4_1:6053565-6053584 Msa0531990:intron 50.0%
GCTGAAGGATAGAGTGGTCT+AGG + chr4_1:6053647-6053666 Msa0531990:intron 50.0%
CAACAATCTTTGCCTGGTGC+TGG + chr4_1:6054193-6054212 Msa0531990:CDS 50.0%
TTGAGGAAGTGAAGGTCCAG+TGG - chr4_1:6054224-6054243 None:intergenic 50.0%
!! GCAAGGTGTTGAGGAAGTGA+AGG - chr4_1:6054232-6054251 None:intergenic 50.0%
AAAGGTCCCAGCTGTGAGTA+CGG - chr4_1:6054262-6054281 None:intergenic 50.0%
! GGCATGTAGGTATAGCTCTG+AGG - chr4_1:6054313-6054332 None:intergenic 50.0%
CTGAAATGCCGATGGCATGT+AGG - chr4_1:6054326-6054345 None:intergenic 50.0%
AAAGCCTGCTGAAATGCCGA+TGG - chr4_1:6054334-6054353 None:intergenic 50.0%
! GCATTTCAGCAGGCTTTTGC+TGG + chr4_1:6054337-6054356 Msa0531990:CDS 50.0%
TAGCACCTACCACCAATCTC+TGG + chr4_1:6054363-6054382 Msa0531990:CDS 50.0%
GATGGTATAGCAGCAGACTG+AGG - chr4_1:6054436-6054455 None:intergenic 50.0%
CAGTCTGCTGCTATACCATC+TGG + chr4_1:6054436-6054455 Msa0531990:CDS 50.0%
GCCCCTACTAGTACAACCAT+TGG + chr4_1:6054520-6054539 Msa0531990:CDS 50.0%
AAGCTGTAATACGTGCTGGG+AGG - chr4_1:6054964-6054983 None:intergenic 50.0%
CTGGAAGCTGTAATACGTGC+TGG - chr4_1:6054968-6054987 None:intergenic 50.0%
CAGCACGTATTACAGCTTCC+AGG + chr4_1:6054966-6054985 Msa0531990:CDS 50.0%
!! TGGCTTTGTCGAAATGCACC+TGG - chr4_1:6055012-6055031 None:intergenic 50.0%
AACATCAGCAGCAGAACCCT+AGG + chr4_1:6055109-6055128 Msa0531990:CDS 50.0%
ACATCAGCAGCAGAACCCTA+GGG + chr4_1:6055110-6055129 Msa0531990:CDS 50.0%
!! CTGCTTAGGTGGTTGGCTTT+GGG - chr4_1:6055154-6055173 None:intergenic 50.0%
!! ACTGCTTAGGTGGTTGGCTT+TGG - chr4_1:6055155-6055174 None:intergenic 50.0%
TGTTGTTGGGACTGCTTAGG+TGG - chr4_1:6055165-6055184 None:intergenic 50.0%
CAAGACCCTTAAAAACCGGG+AGG - chr4_1:6055219-6055238 None:intergenic 50.0%
! TGGGAACGCCTCGTATTGAT+TGG - chr4_1:6055267-6055286 None:intergenic 50.0%
! ATCAATACGAGGCGTTCCCA+CGG + chr4_1:6055267-6055286 Msa0531990:three_prime_UTR 50.0%
GGTCTCTTCGGACCAAACAA+TGG - chr4_1:6055309-6055328 None:intergenic 50.0%
TGGTCCGAAGAGACCCAATA+TGG + chr4_1:6055314-6055333 Msa0531990:three_prime_UTR 50.0%
GAACCCTAACTCGAGGGGAT+CGG + chr4_1:6048771-6048790 Msa0531990:five_prime_UTR 55.0%
ACTCCGATCCCCTCGAGTTA+GGG - chr4_1:6048777-6048796 None:intergenic 55.0%
TACTCCGATCCCCTCGAGTT+AGG - chr4_1:6048778-6048797 None:intergenic 55.0%
AACTCGAGGGGATCGGAGTA+AGG + chr4_1:6048778-6048797 Msa0531990:five_prime_UTR 55.0%
GGGATCGGAGTAAGGATGAG+CGG + chr4_1:6048786-6048805 Msa0531990:exon 55.0%
AGGATGAGCGGCAAAGTAGG+GGG + chr4_1:6048798-6048817 Msa0531990:exon 55.0%
GGCAAAGTAGGGGGACAGAA+AGG + chr4_1:6048807-6048826 Msa0531990:CDS 55.0%
ATCGTTGTCGGGTATACCGG+CGG + chr4_1:6048839-6048858 Msa0531990:CDS 55.0%
GAGCCCAGGTCAAGTGTCAA+TGG + chr4_1:6050336-6050355 Msa0531990:CDS 55.0%
TGTCAAGATGGGTAGGCCAC+AGG + chr4_1:6050366-6050385 Msa0531990:CDS 55.0%
AAGTTGTGATGCGAGGCTGC+TGG - chr4_1:6050454-6050473 None:intergenic 55.0%
! GTTGGTGGGTGCTCAACAGA+AGG - chr4_1:6050583-6050602 None:intergenic 55.0%
TGAGCAAGGGACAGAACCAG+AGG + chr4_1:6051425-6051444 Msa0531990:CDS 55.0%
!! ATGCCACTGTTTCTGGAGCC+GGG + chr4_1:6051541-6051560 Msa0531990:CDS 55.0%
GAGCCGGGACACATTCATCT+AGG + chr4_1:6051556-6051575 Msa0531990:CDS 55.0%
GGGCCTAGATGAATGTGTCC+CGG - chr4_1:6051562-6051581 None:intergenic 55.0%
CCGCGTAATAAGCTAGGGGA+TGG + chr4_1:6052334-6052353 Msa0531990:intron 55.0%
TACCAGGATAGCACCTCCAG+GGG + chr4_1:6053566-6053585 Msa0531990:intron 55.0%
!! GGATGCACAGCAAGGTGTTG+AGG - chr4_1:6054241-6054260 None:intergenic 55.0%
GTGAGTACGGATGCACAGCA+AGG - chr4_1:6054249-6054268 None:intergenic 55.0%
TGTGCATCCGTACTCACAGC+TGG + chr4_1:6054252-6054271 Msa0531990:CDS 55.0%
GTGCATCCGTACTCACAGCT+GGG + chr4_1:6054253-6054272 Msa0531990:CDS 55.0%
CATGCCATCGGCATTTCAGC+AGG + chr4_1:6054327-6054346 Msa0531990:CDS 55.0%
CTACCACCAATCTCTGGCAG+CGG + chr4_1:6054369-6054388 Msa0531990:CDS 55.0%
GGAAGTTCCACCAGCATTCC+TGG + chr4_1:6054469-6054488 Msa0531990:CDS 55.0%
AGTTCCACCAGCATTCCTGG+TGG + chr4_1:6054472-6054491 Msa0531990:CDS 55.0%
GTTTCCACCAGGAATGCTGG+TGG - chr4_1:6054479-6054498 None:intergenic 55.0%
!! GGGGCAGCTGATGGATTCAA+AGG - chr4_1:6054505-6054524 None:intergenic 55.0%
GTACTAGTAGGGGCAGCTGA+TGG - chr4_1:6054514-6054533 None:intergenic 55.0%
ATGCAAGGCCAGTGGTGGTT+AGG + chr4_1:6054797-6054816 Msa0531990:intron 55.0%
GGTGCAAAATGCTGCTGCGA+TGG - chr4_1:6055039-6055058 None:intergenic 55.0%
! CAGCAGCATTTTGCACCGCA+CGG + chr4_1:6055042-6055061 Msa0531990:CDS 55.0%
! AGCAGCATTTTGCACCGCAC+GGG + chr4_1:6055043-6055062 Msa0531990:CDS 55.0%
GTTGGGACTGCTTAGGTGGT+TGG - chr4_1:6055161-6055180 None:intergenic 55.0%
CCGGCCATATTGGGTCTCTT+CGG - chr4_1:6055321-6055340 None:intergenic 55.0%
CCGAAGAGACCCAATATGGC+CGG + chr4_1:6055318-6055337 Msa0531990:three_prime_UTR 55.0%
TGCGGCTGAACCCTAACTCG+AGG + chr4_1:6048764-6048783 Msa0531990:five_prime_UTR 60.0%
GCGGCTGAACCCTAACTCGA+GGG + chr4_1:6048765-6048784 Msa0531990:five_prime_UTR 60.0%
CGGCTGAACCCTAACTCGAG+GGG + chr4_1:6048766-6048785 Msa0531990:five_prime_UTR 60.0%
!! ACCATTTTCCGACTCGCCGC+CGG - chr4_1:6048858-6048877 None:intergenic 60.0%
AATATACCGAGTCGCGGCGG+TGG + chr4_1:6049273-6049292 Msa0531990:CDS 60.0%
AGTGACCGATATGCTGGCCG+TGG + chr4_1:6049309-6049328 Msa0531990:CDS 60.0%
AACTTGCACCACCGCCACCA+CGG - chr4_1:6049329-6049348 None:intergenic 60.0%
GTGGAGGAGCCTCCATAAGC+AGG - chr4_1:6049679-6049698 None:intergenic 60.0%
ACAGGCAGCCACCATCTTGG+AGG + chr4_1:6049734-6049753 Msa0531990:CDS 60.0%
GCAAGGGACAGAACCAGAGG+AGG + chr4_1:6051428-6051447 Msa0531990:CDS 60.0%
TGTCCCGGCTCCAGAAACAG+TGG - chr4_1:6051547-6051566 None:intergenic 60.0%
!! TTCCCCTGGAGGTGCTATCC+TGG - chr4_1:6053571-6053590 None:intergenic 60.0%
! CGCTGCCAGAGATTGGTGGT+AGG - chr4_1:6054371-6054390 None:intergenic 60.0%
!! GAAGCACCGCTGCCAGAGAT+TGG - chr4_1:6054378-6054397 None:intergenic 60.0%
GCAAGGAGATGCAAGGCCAG+TGG + chr4_1:6054789-6054808 Msa0531990:intron 60.0%
AGGAGATGCAAGGCCAGTGG+TGG + chr4_1:6054792-6054811 Msa0531990:intron 60.0%
CCAGGCCCTTGAACCCACAT+AGG - chr4_1:6054922-6054941 None:intergenic 60.0%
CCTATGTGGGTTCAAGGGCC+TGG + chr4_1:6054919-6054938 Msa0531990:CDS 60.0%
AATGCTGCTGCGATGGCTGC+TGG - chr4_1:6055032-6055051 None:intergenic 60.0%
!! CGGCAAGGGAAGCATCCCTA+GGG - chr4_1:6055128-6055147 None:intergenic 60.0%
CCTAGGGATGCTTCCCTTGC+CGG + chr4_1:6055126-6055145 Msa0531990:CDS 60.0%
!! TTGGCTTTGGGAGCCGGCAA+GGG - chr4_1:6055142-6055161 None:intergenic 60.0%
!! AGGTGGTTGGCTTTGGGAGC+CGG - chr4_1:6055148-6055167 None:intergenic 60.0%
!! ATGGGGGCACCGGCCATATT+GGG - chr4_1:6055330-6055349 None:intergenic 60.0%
! CTACTGTCACATGGGGGCAC+CGG - chr4_1:6055340-6055359 None:intergenic 60.0%
ACCGGCGGCGAGTCGGAAAA+TGG + chr4_1:6048854-6048873 Msa0531990:CDS 65.0%
GACCGATATGCTGGCCGTGG+TGG + chr4_1:6049312-6049331 Msa0531990:CDS 65.0%
CGCCACCACGGCCAGCATAT+CGG - chr4_1:6049317-6049336 None:intergenic 65.0%
CGATATGCTGGCCGTGGTGG+CGG + chr4_1:6049315-6049334 Msa0531990:CDS 65.0%
GATGGGTAGGCCACAGGCCA+AGG + chr4_1:6050372-6050391 Msa0531990:CDS 65.0%
CCAGTGGCAACACCAGCACC+AGG - chr4_1:6054208-6054227 None:intergenic 65.0%
!! CCTGGTGCTGGTGTTGCCAC+TGG + chr4_1:6054205-6054224 Msa0531990:CDS 65.0%
GCACCGCTGCCAGAGATTGG+TGG - chr4_1:6054375-6054394 None:intergenic 65.0%
!! CCGGCAAGGGAAGCATCCCT+AGG - chr4_1:6055129-6055148 None:intergenic 65.0%
!! GTTGGCTTTGGGAGCCGGCA+AGG - chr4_1:6055143-6055162 None:intergenic 65.0%
!! CATGGGGGCACCGGCCATAT+TGG - chr4_1:6055331-6055350 None:intergenic 65.0%
CGGGTATACCGGCGGCGAGT+CGG + chr4_1:6048847-6048866 Msa0531990:CDS 70.0%
ATACCGAGTCGCGGCGGTGG+TGG + chr4_1:6049276-6049295 Msa0531990:CDS 70.0%
CTACCACCACCGCCGCGACT+CGG - chr4_1:6049282-6049301 None:intergenic 70.0%
!! TATGCTGGCCGTGGTGGCGG+TGG + chr4_1:6049318-6049337 Msa0531990:CDS 70.0%
TCTGCATGGTCGGCGAGCCC+AGG + chr4_1:6050322-6050341 Msa0531990:CDS 70.0%
GGCACGGATGCCTTGGCCTG+TGG - chr4_1:6050385-6050404 None:intergenic 70.0%
! CGAGTCGCGGCGGTGGTGGT+AGG + chr4_1:6049280-6049299 Msa0531990:CDS 75.0%
! CGCGGCGGTGGTGGTAGGAC+TGG + chr4_1:6049285-6049304 Msa0531990:CDS 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 6048597 6055621 6048597 ID=Msa0531990;Name=Msa0531990
chr4_1 mRNA 6048597 6055621 6048597 ID=Msa0531990-mRNA-1;Parent=Msa0531990;Name=Msa0531990-mRNA-1;_AED=0.03;_eAED=0.03;_QI=204|1|0.9|1|1|1|10|415|862
chr4_1 exon 6048597 6048987 6048597 ID=Msa0531990-mRNA-1:exon:2022;Parent=Msa0531990-mRNA-1
chr4_1 exon 6049082 6049125 6049082 ID=Msa0531990-mRNA-1:exon:2023;Parent=Msa0531990-mRNA-1
chr4_1 exon 6049231 6049369 6049231 ID=Msa0531990-mRNA-1:exon:2024;Parent=Msa0531990-mRNA-1
chr4_1 exon 6049626 6049755 6049626 ID=Msa0531990-mRNA-1:exon:2025;Parent=Msa0531990-mRNA-1
chr4_1 exon 6050264 6050874 6050264 ID=Msa0531990-mRNA-1:exon:2026;Parent=Msa0531990-mRNA-1
chr4_1 exon 6051367 6051649 6051367 ID=Msa0531990-mRNA-1:exon:2027;Parent=Msa0531990-mRNA-1
chr4_1 exon 6051735 6052014 6051735 ID=Msa0531990-mRNA-1:exon:2028;Parent=Msa0531990-mRNA-1
chr4_1 exon 6052678 6052836 6052678 ID=Msa0531990-mRNA-1:exon:2029;Parent=Msa0531990-mRNA-1
chr4_1 exon 6054148 6054603 6054148 ID=Msa0531990-mRNA-1:exon:2030;Parent=Msa0531990-mRNA-1
chr4_1 exon 6054907 6055621 6054907 ID=Msa0531990-mRNA-1:exon:2031;Parent=Msa0531990-mRNA-1
chr4_1 five_prime_UTR 6048597 6048800 6048597 ID=Msa0531990-mRNA-1:five_prime_utr;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6048801 6048987 6048801 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6049082 6049125 6049082 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6049231 6049369 6049231 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6049626 6049755 6049626 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6050264 6050874 6050264 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6051367 6051649 6051367 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6051735 6052014 6051735 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6052678 6052836 6052678 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6054148 6054603 6054148 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 CDS 6054907 6055206 6054907 ID=Msa0531990-mRNA-1:cds;Parent=Msa0531990-mRNA-1
chr4_1 three_prime_UTR 6055207 6055621 6055207 ID=Msa0531990-mRNA-1:three_prime_utr;Parent=Msa0531990-mRNA-1
Gene Sequence

>Msa0531990

ATGAGCGGCAAAGTAGGGGGACAGAAAGGTACATCATCATCGTTGTCGGGTATACCGGCGGCGAGTCGGAAAATGGTACAAAGCTTGAAAGAGATAGTTTCGAATATACCTGATAACGAGATCTATGCCACTCTCAAAGACTGTAACATGGACCCTAACGAAGCTGTTAGTCGTCTTCTTTCTCAAGATCCTTTTCATGAGGTTAAGAGCAAACGAGAAAAGAAAAAAGAGGGTAAGGATACAACAGAACCAAGGTCACGTGGGAGTAATTATAATATACCGAGTCGCGGCGGTGGTGGTAGGACTGGTAGTGACCGATATGCTGGCCGTGGTGGCGGTGGTGCAAGTTCGAACCAATTCAGTAACAATGACTATGGTGTCCAGCAGAGTAAACCCGTGTTTAAGAAAGAAAATGGAACGCCTGCTTATGGAGGCTCCTCCACGTCTTATGCATCTAGTGTGATGGACAATAATGTAAACAGGCAGCCACCATCTTGGAGTGATTCTGTTGGTGTCCATGACGGACTGTCTTCATCATCACATCATGGTGGATTGCAATCTGCATGGTCGGCGAGCCCAGGTCAAGTGTCAATGGCTGACATTGTCAAGATGGGTAGGCCACAGGCCAAGGCATCCGTGCCTAAATCTTCTGTCCACAGTGGGAATCATCAGAATGCTTTTTCAACTCCAGCAGCCTCGCATCACAACTTGAATGTTACTGAAGCAAATAATGAATGGCCTTCTATTGAACCCAATGTTCAACAGAGTGATGAATGGCCTTCTATTGACCCCAATGTTCAACAGAGTGATGAATGGCCTTCTGTTGAGCACCCACCAACAGTTGTTGTTGATGCCCATCCAAATTCTGAGTATTATACAAATACATCTAACTTGGGTGAAGCTAATAGACAACTGCAGAACCACGGAAATGAATTTGTAGCTGAAGACAGTTCTGTTGAGGATGAGAATCCTGTTGATGTTGGATCTGCTTCTATACCTGCTAAAATTATATCTGATGATAATCCAGGAACTGCTTCTGGATATGATGATAATTTGTACAAGGACATAAATTCTTACCAGTCTCATCGACATCCTTTTGATGACAACGAAGCTGAAAATGGTGTTTCATCAGTGGCTACAAACTTAGAGCAGCTAAATTTACACACAGATGAGCAAGGGACAGAACCAGAGGAGGACAATTCTGATGTACTTATTCCAAATCACCTACAACTCCATACTCCAGAGTGTTTTAGTCTGAGCTTTGGAAGTTTTGGACCAAAACAAAATGCCACTGTTTCTGGAGCCGGGACACATTCATCTAGGCCCTTACAAAGTAACTTGGAGGAGACTTCTGGAGCTACTGATGTTTCAGCAATTGGGTCCTCAGATGCCAAAAATCCCGACTATTATGGGGATGAGCATATTGCTACTACCTCAGATGGCAATATATCCCACATAACTGGTGTGGATGCTAGGACTTATGAACATTCTTCCATTTCACAACCAGAGGCTTTAAAGTCTGAACCCTCTGAAACTGCTCAGGAAAATCAATATTCATTTCCTTCATCTTCGCATGAGTTTACATATGAAAATGCCCAACAACCAGAAGTTGCATATCCTCATTCACAAGCAAGCTCACAGATCCAGAACCTATCTCCCTTCTCCAGTGTAATGGCATATACAAATTCTTTGCCCAATGCTCTGTTGGCTTCAACGGTTCAAACACCAAGGGAGGATATCCCATACTCACCCTTCCCTGTTACACAAGCAATGCCTGCAAAATATAGCAACATGGCTTCTTCAATTGGTGGTTCCACGATAAACATGTCAGAGGCTTTAAGGGCAAACAGCATTTCGACGCCTCAAGCTCAACCTAATCAACAATCTTTGCCTGGTGCTGGTGTTGCCACTGGACCTTCACTTCCTCAACACCTTGCTGTGCATCCGTACTCACAGCTGGGACCTTTTGCTAATATGATAAGTTATCCGTTCATGCCTCAGAGCTATACCTACATGCCATCGGCATTTCAGCAGGCTTTTGCTGGAAATAGCACCTACCACCAATCTCTGGCAGCGGTGCTTCCACAATATAAAAATAGCATTTCTGTCAGCAGCTTGCCTCAGTCTGCTGCTATACCATCTGGATATGGTTTTGGAAGTTCCACCAGCATTCCTGGTGGAAACTATCCTTTGAATCCATCAGCTGCCCCTACTAGTACAACCATTGGATATGATGACGTGATAAACTCCCAGTATAAGGATAACAATCATATGATTTCACTTCAGCAGAATGAGAACAATCCTATGTGGGTTCAAGGGCCTGGTTCTCGAACAATGTCAGTTCCTCCCAGCACGTATTACAGCTTCCAGGGACAGAATCAACAACAACAACCAGGTGCATTTCGACAAAGCCAGCAGCCATCGCAGCAGCATTTTGCACCGCACGGGTACCCTAATAATTTCTACCATTCTCAGAGTGGGATTTCTCTAGAACATCAGCAGCAGAACCCTAGGGATGCTTCCCTTGCCGGCTCCCAAAGCCAACCACCTAAGCAGTCCCAACAACAATTGTGGCAAAACAGCTACTAA
Protein sequence

>Msa0531990

MSGKVGGQKGTSSSLSGIPAASRKMVQSLKEIVSNIPDNEIYATLKDCNMDPNEAVSRLLSQDPFHEVKSKREKKKEGKDTTEPRSRGSNYNIPSRGGGGRTGSDRYAGRGGGGASSNQFSNNDYGVQQSKPVFKKENGTPAYGGSSTSYASSVMDNNVNRQPPSWSDSVGVHDGLSSSSHHGGLQSAWSASPGQVSMADIVKMGRPQAKASVPKSSVHSGNHQNAFSTPAASHHNLNVTEANNEWPSIEPNVQQSDEWPSIDPNVQQSDEWPSVEHPPTVVVDAHPNSEYYTNTSNLGEANRQLQNHGNEFVAEDSSVEDENPVDVGSASIPAKIISDDNPGTASGYDDNLYKDINSYQSHRHPFDDNEAENGVSSVATNLEQLNLHTDEQGTEPEEDNSDVLIPNHLQLHTPECFSLSFGSFGPKQNATVSGAGTHSSRPLQSNLEETSGATDVSAIGSSDAKNPDYYGDEHIATTSDGNISHITGVDARTYEHSSISQPEALKSEPSETAQENQYSFPSSSHEFTYENAQQPEVAYPHSQASSQIQNLSPFSSVMAYTNSLPNALLASTVQTPREDIPYSPFPVTQAMPAKYSNMASSIGGSTINMSEALRANSISTPQAQPNQQSLPGAGVATGPSLPQHLAVHPYSQLGPFANMISYPFMPQSYTYMPSAFQQAFAGNSTYHQSLAAVLPQYKNSISVSSLPQSAAIPSGYGFGSSTSIPGGNYPLNPSAAPTSTTIGYDDVINSQYKDNNHMISLQQNENNPMWVQGPGSRTMSVPPSTYYSFQGQNQQQQPGAFRQSQQPSQQHFAPHGYPNNFYHSQSGISLEHQQQNPRDASLAGSQSQPPKQSQQQLWQNSY*