Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988370 | RHN51425.1 | 98.551 | 69 | 1 | 0 | 25 | 93 | 93 | 161 | 9.15e-40 | 140 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988370 | sp|Q9XHM1|EIF3C_MEDTR | 76.596 | 47 | 11 | 0 | 25 | 71 | 639 | 685 | 1.22e-17 | 79.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988370 | A0A396HJH6 | 98.551 | 69 | 1 | 0 | 25 | 93 | 93 | 161 | 4.37e-40 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016580 | Msa0988370 | 0.800711 | 1.267949e-48 | -8.615850e-47 |
| Msa0110270 | Msa0988370 | 0.809210 | 2.117262e-50 | -8.615850e-47 |
| Msa0729800 | Msa0988370 | 0.806062 | 9.871247e-50 | -8.615850e-47 |
| Msa0988370 | Msa1023050 | 0.804321 | 2.284601e-49 | -8.615850e-47 |
| Msa0988370 | Msa1135220 | 0.812542 | 4.024163e-51 | -8.615850e-47 |
| Msa0988370 | Msa1285930 | 0.811770 | 5.928304e-51 | -8.615850e-47 |
| Msa0988370 | Msa1344520 | 0.832929 | 7.139169e-56 | -8.615850e-47 |
| Msa0988370 | Msa1422180 | 0.803416 | 3.522197e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988370 | MtrunA17_Chr6g0468411 | 98.551 | 69 | 1 | 0 | 25 | 93 | 93 | 161 | 8.41e-44 | 140 |
| Msa0988370 | MtrunA17_Chr6g0468211 | 72.464 | 69 | 19 | 0 | 25 | 93 | 358 | 426 | 6.63e-23 | 91.7 |
| Msa0988370 | MtrunA17_Chr2g0303811 | 76.596 | 47 | 11 | 0 | 25 | 71 | 76 | 122 | 1.93e-20 | 80.1 |
| Msa0988370 | MtrunA17_Chr1g0155771 | 76.596 | 47 | 11 | 0 | 25 | 71 | 639 | 685 | 8.97e-19 | 79.7 |
| Msa0988370 | MtrunA17_Chr2g0277001 | 76.596 | 47 | 11 | 0 | 25 | 71 | 639 | 685 | 9.32e-19 | 79.7 |
| Msa0988370 | MtrunA17_Chr7g0275381 | 76.596 | 47 | 11 | 0 | 25 | 71 | 641 | 687 | 9.88e-19 | 79.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0988370 | AT3G56150.2 | 63.830 | 47 | 17 | 0 | 25 | 71 | 619 | 665 | 4.54e-15 | 69.7 |
| Msa0988370 | AT3G56150.1 | 63.830 | 47 | 17 | 0 | 25 | 71 | 619 | 665 | 4.54e-15 | 69.7 |
| Msa0988370 | AT3G22860.1 | 65.217 | 46 | 16 | 0 | 27 | 72 | 579 | 624 | 3.83e-14 | 67.0 |
Find 18 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAACATTGGCTGCAATAT+TGG | 0.188251 | 6_4:+41466615 | None:intergenic |
| GACATGATCCTTAACATTTC+AGG | 0.258527 | 6_4:+41466514 | None:intergenic |
| TGAACATTGGCTGCAATATT+GGG | 0.333616 | 6_4:+41466616 | None:intergenic |
| TTCCAGCTTCTTACTGAAAT+CGG | 0.358742 | 6_4:+41467867 | None:intergenic |
| CTAGGTATCTGCTATGCTAC+TGG | 0.434675 | 6_4:-41466644 | Msa0988370:intron |
| GTCACAAGGCTTCTTATCAA+TGG | 0.457370 | 6_4:-41466485 | Msa0988370:CDS |
| TGCCGATTTCAGTAAGAAGC+TGG | 0.475568 | 6_4:-41467869 | Msa0988370:CDS |
| ACGGTCCTCCTGAAATGTTA+AGG | 0.511452 | 6_4:-41466522 | Msa0988370:CDS |
| ATGCTTCGCATCATGAACAT+TGG | 0.573990 | 6_4:+41466603 | None:intergenic |
| CACTAATCTCGAGCAAGCGA+AGG | 0.586081 | 6_4:+41466560 | None:intergenic |
| TAATATTGTCAAAAGCCTTG+TGG | 0.589992 | 6_4:+41466456 | None:intergenic |
| CATCCTGATGATGAAGCTTG+AGG | 0.604932 | 6_4:-41467920 | None:intergenic |
| ATATTAAAGAGGTGGCACTT+AGG | 0.610633 | 6_4:-41466439 | Msa0988370:CDS |
| CACAAGAAATTCTAGACTCG+CGG | 0.636437 | 6_4:+41467890 | None:intergenic |
| ATCATGTCATGGTTGTCACA+AGG | 0.644200 | 6_4:-41466499 | Msa0988370:CDS |
| ATGATCCTTAACATTTCAGG+AGG | 0.650670 | 6_4:+41466517 | None:intergenic |
| AAATGTTAAGGATCATGTCA+TGG | 0.662446 | 6_4:-41466510 | Msa0988370:CDS |
| TATCAATGGAGACTTCCACA+AGG | 0.685730 | 6_4:-41466471 | Msa0988370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGAATTAATTACATTTGATA+TGG | - | chr6_4:41467242-41467261 | Msa0988370:intron | 15.0% |
| !!! | AAATTCTTGATAATGTTAAT+TGG | - | chr6_4:41467433-41467452 | Msa0988370:intron | 15.0% |
| !! | TGAATTAATTACATTTGATA+TGG | - | chr6_4:41467242-41467261 | Msa0988370:intron | 15.0% |
| !!! | AAATTCTTGATAATGTTAAT+TGG | - | chr6_4:41467433-41467452 | Msa0988370:intron | 15.0% |
| !! | AAACTCCTATATACAAAAAA+TGG | + | chr6_4:41466821-41466840 | None:intergenic | 20.0% |
| !! | TTCAATTTAACAACATATGT+CGG | - | chr6_4:41467127-41467146 | Msa0988370:intron | 20.0% |
| !!! | TGATATGGATTACAATATAT+TGG | - | chr6_4:41467257-41467276 | Msa0988370:intron | 20.0% |
| !!! | ATATTTTACTTAACTTCGTT+TGG | - | chr6_4:41467373-41467392 | Msa0988370:intron | 20.0% |
| !! | TTCTCTTTAGTACTATTATT+AGG | - | chr6_4:41467486-41467505 | Msa0988370:intron | 20.0% |
| !! | TCTTAATTTACTTATCTTTC+AGG | - | chr6_4:41467598-41467617 | Msa0988370:intron | 20.0% |
| !! | AAACTCCTATATACAAAAAA+TGG | + | chr6_4:41466821-41466840 | None:intergenic | 20.0% |
| !! | TTCAATTTAACAACATATGT+CGG | - | chr6_4:41467127-41467146 | Msa0988370:intron | 20.0% |
| !!! | TGATATGGATTACAATATAT+TGG | - | chr6_4:41467257-41467276 | Msa0988370:intron | 20.0% |
| !!! | ATATTTTACTTAACTTCGTT+TGG | - | chr6_4:41467373-41467392 | Msa0988370:intron | 20.0% |
| !! | TTCTCTTTAGTACTATTATT+AGG | - | chr6_4:41467486-41467505 | Msa0988370:intron | 20.0% |
| !! | TCTTAATTTACTTATCTTTC+AGG | - | chr6_4:41467598-41467617 | Msa0988370:intron | 20.0% |
| ! | ATTTAAAGATCATTGACAGT+AGG | - | chr6_4:41466611-41466630 | Msa0988370:CDS | 25.0% |
| ! | CAGATTTCATTATCATCAAT+AGG | + | chr6_4:41466644-41466663 | None:intergenic | 25.0% |
| !! | CTATTGATGATAATGAAATC+TGG | - | chr6_4:41466642-41466661 | Msa0988370:CDS | 25.0% |
| ! | TTGTCATTCAAATAATCAAC+AGG | + | chr6_4:41466749-41466768 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAGATATGTTCT+CGG | - | chr6_4:41466787-41466806 | Msa0988370:intron | 25.0% |
| !!! | ACTCACCATTTTTTGTATAT+AGG | - | chr6_4:41466813-41466832 | Msa0988370:intron | 25.0% |
| ! | TGCATTCTAAATGAACTTAA+TGG | + | chr6_4:41466855-41466874 | None:intergenic | 25.0% |
| !! | ATGATTTTTGACATGGTTAA+TGG | + | chr6_4:41466992-41467011 | None:intergenic | 25.0% |
| !! | ATGTATGATGATTTTTGACA+TGG | + | chr6_4:41466999-41467018 | None:intergenic | 25.0% |
| ! | GTCAAAAATCATCATACATT+AGG | - | chr6_4:41467000-41467019 | Msa0988370:intron | 25.0% |
| ! | ACAAAATATAACAGTGAACA+AGG | + | chr6_4:41467349-41467368 | None:intergenic | 25.0% |
| ! | TATCAAGAATTTAGTCTATC+AGG | + | chr6_4:41467425-41467444 | None:intergenic | 25.0% |
| ! | ATGCAAGTGATAAACTAAAT+AGG | + | chr6_4:41467522-41467541 | None:intergenic | 25.0% |
| !!! | CACTTGCATTTTTTTTCAAT+CGG | - | chr6_4:41467533-41467552 | Msa0988370:intron | 25.0% |
| ! | ATTTACTTATCTTTCAGGAA+AGG | - | chr6_4:41467603-41467622 | Msa0988370:intron | 25.0% |
| ! | AGATGTATATGCATATGATA+TGG | + | chr6_4:41467650-41467669 | None:intergenic | 25.0% |
| ! | AGTGACAAAAAAACATTCAA+CGG | - | chr6_4:41467795-41467814 | Msa0988370:intron | 25.0% |
| !! | TTTTGACAATATTAAAGAGG+TGG | - | chr6_4:41467889-41467908 | Msa0988370:CDS | 25.0% |
| ! | ATTTAAAGATCATTGACAGT+AGG | - | chr6_4:41466611-41466630 | Msa0988370:CDS | 25.0% |
| ! | CAGATTTCATTATCATCAAT+AGG | + | chr6_4:41466644-41466663 | None:intergenic | 25.0% |
| !! | CTATTGATGATAATGAAATC+TGG | - | chr6_4:41466642-41466661 | Msa0988370:CDS | 25.0% |
| ! | TTGTCATTCAAATAATCAAC+AGG | + | chr6_4:41466749-41466768 | None:intergenic | 25.0% |
| ! | AAAGAAGAAAGATATGTTCT+CGG | - | chr6_4:41466787-41466806 | Msa0988370:intron | 25.0% |
| !!! | ACTCACCATTTTTTGTATAT+AGG | - | chr6_4:41466813-41466832 | Msa0988370:intron | 25.0% |
| ! | TGCATTCTAAATGAACTTAA+TGG | + | chr6_4:41466855-41466874 | None:intergenic | 25.0% |
| !! | ATGATTTTTGACATGGTTAA+TGG | + | chr6_4:41466992-41467011 | None:intergenic | 25.0% |
| !! | ATGTATGATGATTTTTGACA+TGG | + | chr6_4:41466999-41467018 | None:intergenic | 25.0% |
| ! | GTCAAAAATCATCATACATT+AGG | - | chr6_4:41467000-41467019 | Msa0988370:intron | 25.0% |
| ! | ACAAAATATAACAGTGAACA+AGG | + | chr6_4:41467349-41467368 | None:intergenic | 25.0% |
| ! | TATCAAGAATTTAGTCTATC+AGG | + | chr6_4:41467425-41467444 | None:intergenic | 25.0% |
| ! | ATGCAAGTGATAAACTAAAT+AGG | + | chr6_4:41467522-41467541 | None:intergenic | 25.0% |
| !!! | CACTTGCATTTTTTTTCAAT+CGG | - | chr6_4:41467533-41467552 | Msa0988370:intron | 25.0% |
| ! | ATTTACTTATCTTTCAGGAA+AGG | - | chr6_4:41467603-41467622 | Msa0988370:intron | 25.0% |
| ! | AGATGTATATGCATATGATA+TGG | + | chr6_4:41467650-41467669 | None:intergenic | 25.0% |
| ! | AGTGACAAAAAAACATTCAA+CGG | - | chr6_4:41467795-41467814 | Msa0988370:intron | 25.0% |
| !! | TTTTGACAATATTAAAGAGG+TGG | - | chr6_4:41467889-41467908 | Msa0988370:CDS | 25.0% |
| ATGATAAAGCCTAAAAGAGA+TGG | - | chr6_4:41466676-41466695 | Msa0988370:intron | 30.0% | |
| TGATAAAGCCTAAAAGAGAT+GGG | - | chr6_4:41466677-41466696 | Msa0988370:intron | 30.0% | |
| !! | TTAGTTTTCCCATCTCTTTT+AGG | + | chr6_4:41466688-41466707 | None:intergenic | 30.0% |
| GGTATACTATATGTCATCAA+AGG | + | chr6_4:41466900-41466919 | None:intergenic | 30.0% | |
| TATAGTATACCTCAGCATTA+CGG | - | chr6_4:41466909-41466928 | Msa0988370:intron | 30.0% | |
| AGAATAATTATTCACACTGG+AGG | + | chr6_4:41466955-41466974 | None:intergenic | 30.0% | |
| CAGAGAATAATTATTCACAC+TGG | + | chr6_4:41466958-41466977 | None:intergenic | 30.0% | |
| AAATCATCATACATTAGGTG+AGG | - | chr6_4:41467005-41467024 | Msa0988370:intron | 30.0% | |
| ACTAACTCAGACATAGATAT+TGG | - | chr6_4:41467047-41467066 | Msa0988370:intron | 30.0% | |
| ! | AAGCCTTATAGATGAAATGT+TGG | - | chr6_4:41467178-41467197 | Msa0988370:intron | 30.0% |
| AAATATAACAGTGAACAAGG+TGG | + | chr6_4:41467346-41467365 | None:intergenic | 30.0% | |
| CAAGTGATAAACTAAATAGG+AGG | + | chr6_4:41467519-41467538 | None:intergenic | 30.0% | |
| AAATGTTAAGGATCATGTCA+TGG | - | chr6_4:41467826-41467845 | Msa0988370:intron | 30.0% | |
| TAATATTGTCAAAAGCCTTG+TGG | + | chr6_4:41467883-41467902 | None:intergenic | 30.0% | |
| ! | GGCTTTTGACAATATTAAAG+AGG | - | chr6_4:41467886-41467905 | Msa0988370:CDS | 30.0% |
| ATGATAAAGCCTAAAAGAGA+TGG | - | chr6_4:41466676-41466695 | Msa0988370:intron | 30.0% | |
| TGATAAAGCCTAAAAGAGAT+GGG | - | chr6_4:41466677-41466696 | Msa0988370:intron | 30.0% | |
| !! | TTAGTTTTCCCATCTCTTTT+AGG | + | chr6_4:41466688-41466707 | None:intergenic | 30.0% |
| GGTATACTATATGTCATCAA+AGG | + | chr6_4:41466900-41466919 | None:intergenic | 30.0% | |
| TATAGTATACCTCAGCATTA+CGG | - | chr6_4:41466909-41466928 | Msa0988370:intron | 30.0% | |
| AGAATAATTATTCACACTGG+AGG | + | chr6_4:41466955-41466974 | None:intergenic | 30.0% | |
| CAGAGAATAATTATTCACAC+TGG | + | chr6_4:41466958-41466977 | None:intergenic | 30.0% | |
| AAATCATCATACATTAGGTG+AGG | - | chr6_4:41467005-41467024 | Msa0988370:intron | 30.0% | |
| ACTAACTCAGACATAGATAT+TGG | - | chr6_4:41467047-41467066 | Msa0988370:intron | 30.0% | |
| ! | AAGCCTTATAGATGAAATGT+TGG | - | chr6_4:41467178-41467197 | Msa0988370:intron | 30.0% |
| AAATATAACAGTGAACAAGG+TGG | + | chr6_4:41467346-41467365 | None:intergenic | 30.0% | |
| CAAGTGATAAACTAAATAGG+AGG | + | chr6_4:41467519-41467538 | None:intergenic | 30.0% | |
| AAATGTTAAGGATCATGTCA+TGG | - | chr6_4:41467826-41467845 | Msa0988370:intron | 30.0% | |
| TAATATTGTCAAAAGCCTTG+TGG | + | chr6_4:41467883-41467902 | None:intergenic | 30.0% | |
| ! | GGCTTTTGACAATATTAAAG+AGG | - | chr6_4:41467886-41467905 | Msa0988370:CDS | 30.0% |
| TTCCAGCTTCTTACTGAAAT+CGG | + | chr6_4:41466472-41466491 | None:intergenic | 35.0% | |
| GTTGCATTGAAGATCACATT+TGG | + | chr6_4:41466711-41466730 | None:intergenic | 35.0% | |
| TAATTATTCACACTGGAGGA+AGG | + | chr6_4:41466951-41466970 | None:intergenic | 35.0% | |
| ! | TACATGTTTGTGTCGGTATA+GGG | + | chr6_4:41467074-41467093 | None:intergenic | 35.0% |
| TTACGTCTACATGTTTGTGT+CGG | + | chr6_4:41467081-41467100 | None:intergenic | 35.0% | |
| GCACCAACATTTCATCTATA+AGG | + | chr6_4:41467184-41467203 | None:intergenic | 35.0% | |
| !! | GAAATGTTGGTGCTACAAAT+TGG | - | chr6_4:41467191-41467210 | Msa0988370:intron | 35.0% |
| ACTTATCTTTCAGGAAAGGT+TGG | - | chr6_4:41467607-41467626 | Msa0988370:intron | 35.0% | |
| !! | TACCTAGATACACTGATTCT+AGG | + | chr6_4:41467679-41467698 | None:intergenic | 35.0% |
| ! | TGAACATTGGCTGCAATATT+GGG | + | chr6_4:41467723-41467742 | None:intergenic | 35.0% |
| ! | ATGAACATTGGCTGCAATAT+TGG | + | chr6_4:41467724-41467743 | None:intergenic | 35.0% |
| ATGATCCTTAACATTTCAGG+AGG | + | chr6_4:41467822-41467841 | None:intergenic | 35.0% | |
| GACATGATCCTTAACATTTC+AGG | + | chr6_4:41467825-41467844 | None:intergenic | 35.0% | |
| ATATTAAAGAGGTGGCACTT+AGG | - | chr6_4:41467897-41467916 | Msa0988370:CDS | 35.0% | |
| TTCCAGCTTCTTACTGAAAT+CGG | + | chr6_4:41466472-41466491 | None:intergenic | 35.0% | |
| GTTGCATTGAAGATCACATT+TGG | + | chr6_4:41466711-41466730 | None:intergenic | 35.0% | |
| TAATTATTCACACTGGAGGA+AGG | + | chr6_4:41466951-41466970 | None:intergenic | 35.0% | |
| ! | TACATGTTTGTGTCGGTATA+GGG | + | chr6_4:41467074-41467093 | None:intergenic | 35.0% |
| TTACGTCTACATGTTTGTGT+CGG | + | chr6_4:41467081-41467100 | None:intergenic | 35.0% | |
| GCACCAACATTTCATCTATA+AGG | + | chr6_4:41467184-41467203 | None:intergenic | 35.0% | |
| !! | GAAATGTTGGTGCTACAAAT+TGG | - | chr6_4:41467191-41467210 | Msa0988370:intron | 35.0% |
| ACTTATCTTTCAGGAAAGGT+TGG | - | chr6_4:41467607-41467626 | Msa0988370:intron | 35.0% | |
| !! | TACCTAGATACACTGATTCT+AGG | + | chr6_4:41467679-41467698 | None:intergenic | 35.0% |
| ! | TGAACATTGGCTGCAATATT+GGG | + | chr6_4:41467723-41467742 | None:intergenic | 35.0% |
| ! | ATGAACATTGGCTGCAATAT+TGG | + | chr6_4:41467724-41467743 | None:intergenic | 35.0% |
| ATGATCCTTAACATTTCAGG+AGG | + | chr6_4:41467822-41467841 | None:intergenic | 35.0% | |
| GACATGATCCTTAACATTTC+AGG | + | chr6_4:41467825-41467844 | None:intergenic | 35.0% | |
| ATATTAAAGAGGTGGCACTT+AGG | - | chr6_4:41467897-41467916 | Msa0988370:CDS | 35.0% | |
| CACAAGAAATTCTAGACTCG+CGG | + | chr6_4:41466449-41466468 | None:intergenic | 40.0% | |
| ! | CTACATGTTTGTGTCGGTAT+AGG | + | chr6_4:41467075-41467094 | None:intergenic | 40.0% |
| AGTCTATCAGGTTAGTGTCT+AGG | + | chr6_4:41467413-41467432 | None:intergenic | 40.0% | |
| CTCCTAGAATCAGTGTATCT+AGG | - | chr6_4:41467674-41467693 | Msa0988370:intron | 40.0% | |
| ATGCTTCGCATCATGAACAT+TGG | + | chr6_4:41467736-41467755 | None:intergenic | 40.0% | |
| ATCATGTCATGGTTGTCACA+AGG | - | chr6_4:41467837-41467856 | Msa0988370:intron | 40.0% | |
| GTCACAAGGCTTCTTATCAA+TGG | - | chr6_4:41467851-41467870 | Msa0988370:intron | 40.0% | |
| TATCAATGGAGACTTCCACA+AGG | - | chr6_4:41467865-41467884 | Msa0988370:intron | 40.0% | |
| CACAAGAAATTCTAGACTCG+CGG | + | chr6_4:41466449-41466468 | None:intergenic | 40.0% | |
| ! | CTACATGTTTGTGTCGGTAT+AGG | + | chr6_4:41467075-41467094 | None:intergenic | 40.0% |
| AGTCTATCAGGTTAGTGTCT+AGG | + | chr6_4:41467413-41467432 | None:intergenic | 40.0% | |
| CTCCTAGAATCAGTGTATCT+AGG | - | chr6_4:41467674-41467693 | Msa0988370:intron | 40.0% | |
| ATGCTTCGCATCATGAACAT+TGG | + | chr6_4:41467736-41467755 | None:intergenic | 40.0% | |
| ATCATGTCATGGTTGTCACA+AGG | - | chr6_4:41467837-41467856 | Msa0988370:intron | 40.0% | |
| GTCACAAGGCTTCTTATCAA+TGG | - | chr6_4:41467851-41467870 | Msa0988370:intron | 40.0% | |
| TATCAATGGAGACTTCCACA+AGG | - | chr6_4:41467865-41467884 | Msa0988370:intron | 40.0% | |
| !! | TGCCGATTTCAGTAAGAAGC+TGG | - | chr6_4:41466467-41466486 | Msa0988370:CDS | 45.0% |
| TTTGTTGCACCGTAATGCTG+AGG | + | chr6_4:41466921-41466940 | None:intergenic | 45.0% | |
| CTAGGTATCTGCTATGCTAC+TGG | - | chr6_4:41467692-41467711 | Msa0988370:intron | 45.0% | |
| ACGGTCCTCCTGAAATGTTA+AGG | - | chr6_4:41467814-41467833 | Msa0988370:intron | 45.0% | |
| !! | TGCCGATTTCAGTAAGAAGC+TGG | - | chr6_4:41466467-41466486 | Msa0988370:CDS | 45.0% |
| TTTGTTGCACCGTAATGCTG+AGG | + | chr6_4:41466921-41466940 | None:intergenic | 45.0% | |
| CTAGGTATCTGCTATGCTAC+TGG | - | chr6_4:41467692-41467711 | Msa0988370:intron | 45.0% | |
| ACGGTCCTCCTGAAATGTTA+AGG | - | chr6_4:41467814-41467833 | Msa0988370:intron | 45.0% | |
| !! | CAAAATATATATAAATTTAT+GGG | + | chr6_4:41466516-41466535 | None:intergenic | 5.0% |
| !! | ACAAAATATATATAAATTTA+TGG | + | chr6_4:41466517-41466536 | None:intergenic | 5.0% |
| !!! | TTAATTTTCTTTAAAATTTT+AGG | - | chr6_4:41466578-41466597 | Msa0988370:CDS | 5.0% |
| !! | CAAAATATATATAAATTTAT+GGG | + | chr6_4:41466516-41466535 | None:intergenic | 5.0% |
| !! | ACAAAATATATATAAATTTA+TGG | + | chr6_4:41466517-41466536 | None:intergenic | 5.0% |
| !!! | TTAATTTTCTTTAAAATTTT+AGG | - | chr6_4:41466578-41466597 | Msa0988370:CDS | 5.0% |
| !! | AACATATGTCGGTGCTGTGC+AGG | - | chr6_4:41467138-41467157 | Msa0988370:intron | 50.0% |
| TGTGCAGGTATCAGTGTCAG+AGG | - | chr6_4:41467153-41467172 | Msa0988370:intron | 50.0% | |
| CACTAATCTCGAGCAAGCGA+AGG | + | chr6_4:41467779-41467798 | None:intergenic | 50.0% | |
| !! | AACATATGTCGGTGCTGTGC+AGG | - | chr6_4:41467138-41467157 | Msa0988370:intron | 50.0% |
| TGTGCAGGTATCAGTGTCAG+AGG | - | chr6_4:41467153-41467172 | Msa0988370:intron | 50.0% | |
| CACTAATCTCGAGCAAGCGA+AGG | + | chr6_4:41467779-41467798 | None:intergenic | 50.0% | |
| ! | CAACAGGCTTTGTCGTCTGC+AGG | + | chr6_4:41466733-41466752 | None:intergenic | 55.0% |
| ! | CAACAGGCTTTGTCGTCTGC+AGG | + | chr6_4:41466733-41466752 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 41466426 | 41467932 | 41466426 | ID=Msa0988370;Name=Msa0988370 |
| chr6_4 | mRNA | 41466426 | 41467932 | 41466426 | ID=Msa0988370-mRNA-1;Parent=Msa0988370;Name=Msa0988370-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0|0|0.33|1|1|3|0|102 |
| chr6_4 | exon | 41467867 | 41467932 | 41467867 | ID=Msa0988370-mRNA-1:exon:9872;Parent=Msa0988370-mRNA-1 |
| chr6_4 | exon | 41467753 | 41467758 | 41467753 | ID=Msa0988370-mRNA-1:exon:9871;Parent=Msa0988370-mRNA-1 |
| chr6_4 | exon | 41466426 | 41466662 | 41466426 | ID=Msa0988370-mRNA-1:exon:9870;Parent=Msa0988370-mRNA-1 |
| chr6_4 | CDS | 41467867 | 41467932 | 41467867 | ID=Msa0988370-mRNA-1:cds;Parent=Msa0988370-mRNA-1 |
| chr6_4 | CDS | 41467753 | 41467758 | 41467753 | ID=Msa0988370-mRNA-1:cds;Parent=Msa0988370-mRNA-1 |
| chr6_4 | CDS | 41466426 | 41466662 | 41466426 | ID=Msa0988370-mRNA-1:cds;Parent=Msa0988370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
