AlfalfaGEDB | Msa0729800

M. sativa cultivar zhongmu-4 / Msa0729800

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009506 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0030054 GO:0031625 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF07714.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729800	KEH27973.1	78.061	196	13	2	1	166	469	664	9.12e-94	297

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729800	sp\|Q9ZT07\|RKS1_ARATH	52.632	190	60	2	7	166	491	680	2.50e-56	192

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729800	A0A072UFT0	78.061	196	13	2	1	166	469	664	4.35e-94	297

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0012700	Msa0729800	0.851412	9.027623e-61	-8.615850e-47
Msa0015750	Msa0729800	0.858969	5.716144e-63	-8.615850e-47
Msa0016570	Msa0729800	0.862334	5.456709e-64	-8.615850e-47
Msa0016580	Msa0729800	0.881394	2.488989e-70	-8.615850e-47
Msa0026450	Msa0729800	0.834022	3.810086e-56	-8.615850e-47
Msa0064970	Msa0729800	0.800585	1.345131e-48	-8.615850e-47
Msa0071500	Msa0729800	0.815055	1.124867e-51	-8.615850e-47
Msa0092630	Msa0729800	0.832037	1.187738e-55	-8.615850e-47
Msa0102070	Msa0729800	0.867891	9.793233e-66	-8.615850e-47
Msa0103020	Msa0729800	0.803694	3.084974e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729800	MtrunA17_Chr5g0422921	78.061	196	13	2	1	166	469	664	9.15e-97	296
Msa0729800	MtrunA17_Chr5g0428111	65.241	187	35	2	10	166	483	669	1.25e-76	243
Msa0729800	MtrunA17_Chr5g0428101	62.176	193	43	2	4	166	475	667	4.65e-76	242
Msa0729800	MtrunA17_Chr3g0093161	63.212	193	41	2	4	166	471	663	3.72e-75	239
Msa0729800	MtrunA17_Chr8g0361431	59.596	198	45	3	4	166	453	650	2.83e-70	226
Msa0729800	MtrunA17_Chr3g0078551	57.436	195	52	2	3	166	496	690	1.03e-69	225
Msa0729800	MtrunA17_Chr3g0078531	55.612	196	55	3	2	166	499	693	2.67e-67	219
Msa0729800	MtrunA17_Chr3g0078521	55.102	196	56	3	2	166	491	685	6.12e-66	215
Msa0729800	MtrunA17_Chr8g0361281	56.771	192	53	2	5	166	488	679	1.27e-65	214
Msa0729800	MtrunA17_Chr3g0078541	54.872	195	54	3	3	166	505	696	6.01e-65	212

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0729800	AT1G11340.2	52.632	190	60	2	7	166	559	748	1.67e-57	191
Msa0729800	AT1G11340.3	52.632	190	60	2	7	166	559	748	1.82e-57	192
Msa0729800	AT1G11340.1	52.632	190	60	2	7	166	491	680	2.54e-57	192
Msa0729800	AT1G11303.1	51.099	182	59	2	15	166	493	674	2.24e-54	184
Msa0729800	AT1G11330.3	50.000	182	61	2	15	166	508	689	2.77e-54	182
Msa0729800	AT4G21390.2	50.549	182	60	2	15	166	513	694	3.38e-54	182
Msa0729800	AT4G21390.1	50.549	182	60	2	15	166	513	694	3.44e-54	183
Msa0729800	AT1G11330.1	50.000	182	61	2	15	166	506	687	3.62e-54	183
Msa0729800	AT1G11330.2	50.000	182	61	2	15	166	508	689	3.63e-54	183
Msa0729800	AT4G27300.1	52.432	185	58	3	12	166	481	665	4.30e-54	183

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Find 35 sgRNAs with CRISPR-Local

Find 98 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGTACCTTGTATACCC+CGG	0.669756	5_1:+37789936	None:intergenic
AAACTTGGTGAAGGTGGTTT+TGG	0.242437	5_1:-37789960	Msa0729800:CDS
AAGAATCTTGTTAAGGTTGT+TGG	0.399864	5_1:-37789678	Msa0729800:CDS
AATAAATCGAGACTTCTATT+CGG	0.490390	5_1:+37789609	None:intergenic
AATCATACATAGGGATCTAA+AGG	0.451598	5_1:-37789373	Msa0729800:CDS
AATCCAAAGATTTCAGATTT+TGG	0.180041	5_1:-37789321	Msa0729800:CDS
AATGATAATAAACTTGGTGA+AGG	0.583305	5_1:-37789969	Msa0729800:CDS
ACTGTAGCAAGTTCAAATAT+AGG	0.483889	5_1:+37790017	None:intergenic
AGTCTCGATTTATTCATATT+TGG	0.229762	5_1:-37789600	Msa0729800:intron
ATAAAAGAGAAAGATGAAGA+TGG	0.536017	5_1:-37790059	Msa0729800:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTAGCAAGTTCAAATAT+AGG	+	chr5_1:37789308-37789327	None:intergenic	30.0%
ACATCGAGTAAATCTTGTTA+AGG	-	chr5_1:37789603-37789622	Msa0729800:CDS	30.0%
GTAAATCTTGTTAAGGTTGT+TGG	-	chr5_1:37789610-37789629	Msa0729800:CDS	30.0%
TGCATTGAAGAATCTTGTTA+AGG	-	chr5_1:37789637-37789656	Msa0729800:CDS	30.0%
AAGAATCTTGTTAAGGTTGT+TGG	-	chr5_1:37789644-37789663	Msa0729800:CDS	30.0%
AATCATACATAGGGATCTAA+AGG	-	chr5_1:37789949-37789968	Msa0729800:CDS	30.0%
ACTGTAGCAAGTTCAAATAT+AGG	+	chr5_1:37789308-37789327	None:intergenic	30.0%
ACATCGAGTAAATCTTGTTA+AGG	-	chr5_1:37789603-37789622	Msa0729800:CDS	30.0%
GTAAATCTTGTTAAGGTTGT+TGG	-	chr5_1:37789610-37789629	Msa0729800:CDS	30.0%
TGCATTGAAGAATCTTGTTA+AGG	-	chr5_1:37789637-37789656	Msa0729800:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	37789257	37790087	37789257	ID=Msa0729800;Name=Msa0729800
chr5_1	mRNA	37789257	37790087	37789257	ID=Msa0729800-mRNA-1;Parent=Msa0729800;Name=Msa0729800-mRNA-1;_AED=0.30;_eAED=0.31;_QI=0\|0\|0\|1\|1\|1\|3\|0\|166
chr5_1	exon	37789945	37790087	37789945	ID=Msa0729800-mRNA-1:exon:11410;Parent=Msa0729800-mRNA-1
chr5_1	exon	37789601	37789719	37789601	ID=Msa0729800-mRNA-1:exon:11409;Parent=Msa0729800-mRNA-1
chr5_1	exon	37789257	37789495	37789257	ID=Msa0729800-mRNA-1:exon:11408;Parent=Msa0729800-mRNA-1
chr5_1	CDS	37789945	37790087	37789945	ID=Msa0729800-mRNA-1:cds;Parent=Msa0729800-mRNA-1
chr5_1	CDS	37789601	37789719	37789601	ID=Msa0729800-mRNA-1:cds;Parent=Msa0729800-mRNA-1
chr5_1	CDS	37789257	37789495	37789257	ID=Msa0729800-mRNA-1:cds;Parent=Msa0729800-mRNA-1

Gene Sequence

>Msa0729800

ATGATGATAAAAGAGAAAGATGAAGATGGACATGACGATTTTGAGCTTCCTATATTTGAACTTGCTACAGTACTCAAGGCGACCAATAACTTCTCAAATGATAATAAACTTGGTGAAGGTGGTTTTGGACCGGGGTATACAAGGTTGTTGGTTGTTGCATTGAAGAATCTTGTTAAGGTTGTTGGTTGTTGCATTGAAGGAGAGGAGAAAATGTTACTCTATGAGTCCATGCCGAATAGAAGTCTCGATTTATTCATATTTGATCCAGTTCAAAGTAGGTTCTTAGGTTGGCCTGTGCGCTTCAACATGTTGAATGCAATTGCTCGAGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGAATCATACATAGGGATCTAAAGGCAAGCAATATTTTCGTCGACAATGATATGAATCCAAAGATTTCAGATTTTGGCATGGCTAGAATGTGCAGAGGGGATCAAATTGAAGGGAAGACTAGTAGAATAGTTGGGACATAG

Protein sequence

>Msa0729800

MMIKEKDEDGHDDFELPIFELATVLKATNNFSNDNKLGEGGFGPGYTRLLVVALKNLVKVVGCCIEGEEKMLLYESMPNRSLDLFIFDPVQSRFLGWPVRFNMLNAIARGLLYLHQDSRLRIIHRDLKASNIFVDNDMNPKISDFGMARMCRGDQIEGKTSRIVGT*