Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0990650 | XP_024631910.1 | 84.783 | 92 | 7 | 2 | 86 | 172 | 1052 | 1141 | 3.38e-32 | 132 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0990650 | A0A2K3MEG5 | 79.104 | 67 | 14 | 0 | 86 | 152 | 107 | 173 | 8.71e-24 | 102 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0622630 | Msa0990650 | 0.800745 | 1.248011e-48 | -8.615850e-47 |
Msa0623820 | Msa0990650 | 0.814559 | 1.448440e-51 | -8.615850e-47 |
Msa0727130 | Msa0990650 | 0.821895 | 3.165842e-53 | -8.615850e-47 |
Msa0990650 | Msa1187290 | 0.815217 | 1.035155e-51 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 57 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTGGCAGGGTTGACGATTC+AGG | 0.139753 | 6_4:-52695301 | Msa0990650:CDS |
TAAGATTACATGTATCATTT+TGG | 0.253899 | 6_4:+52696847 | None:intergenic |
TGTTTCAATTTCTCTACTTT+GGG | 0.267804 | 6_4:-52696669 | Msa0990650:CDS |
CACCACTTCAATGCATGAAT+TGG | 0.272830 | 6_4:+52696706 | None:intergenic |
ATTGGGATAAGAAAGAAAAT+TGG | 0.309564 | 6_4:+52696724 | None:intergenic |
TTGTTTCAATTTCTCTACTT+TGG | 0.314070 | 6_4:-52696670 | Msa0990650:CDS |
TTGGGATAAGAAAGAAAATT+GGG | 0.319969 | 6_4:+52696725 | None:intergenic |
TCAAAGGGTTATGGTGGCTT+TGG | 0.352518 | 6_4:+52696886 | None:intergenic |
CAGTTAGGACCGAGGCTTCT+TGG | 0.357951 | 6_4:-52695319 | Msa0990650:CDS |
TGATGAAGTTCAAAGGGTTA+TGG | 0.383423 | 6_4:+52696877 | None:intergenic |
TTGAATTGTGCTTCTCGCCT+TGG | 0.392592 | 6_4:+52695101 | None:intergenic |
ATACGGTCCTTTCTTGTATG+AGG | 0.404809 | 6_4:-52694947 | Msa0990650:CDS |
TGTATGAGGTTACCTTTGAA+TGG | 0.410546 | 6_4:-52694933 | Msa0990650:CDS |
TAGGACCGAGGCTTCTTGGC+AGG | 0.415660 | 6_4:-52695315 | Msa0990650:CDS |
ATTGTGTGTTTGATTCATCT+TGG | 0.420416 | 6_4:+52695040 | None:intergenic |
AAGGGAGAAATGAGTGGATA+AGG | 0.431991 | 6_4:+52696928 | None:intergenic |
GATTGTTTAGGCAGGCAGTT+AGG | 0.435522 | 6_4:-52695334 | Msa0990650:intron |
TTGGCAGGGTTGACGATTCA+GGG | 0.436084 | 6_4:-52695300 | Msa0990650:CDS |
TGGTATGGATCTTCTTTCTC+CGG | 0.436189 | 6_4:+52695060 | None:intergenic |
CTGTAGGTTCGGTTGGGACT+AGG | 0.439250 | 6_4:+52696764 | None:intergenic |
TTTGGGTTAAGATGAAGCTT+AGG | 0.452836 | 6_4:-52696652 | Msa0990650:intron |
ACCACTTCAATGCATGAATT+GGG | 0.454441 | 6_4:+52696707 | None:intergenic |
GTATGAGGTTACCTTTGAAT+GGG | 0.455125 | 6_4:-52694932 | Msa0990650:CDS |
ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 6_4:-52695006 | Msa0990650:CDS |
GTGTTTGATTCATCTTGGTA+TGG | 0.467203 | 6_4:+52695045 | None:intergenic |
GAAAGAAAATTGGGGAAAGA+AGG | 0.470391 | 6_4:+52696734 | None:intergenic |
AATATCTTTATCCCATTCAA+AGG | 0.483583 | 6_4:+52694921 | None:intergenic |
CAGAGATTGATGAAGTTCAA+AGG | 0.486977 | 6_4:+52696870 | None:intergenic |
AATGGATGGCCGAGAAAAGA+AGG | 0.495594 | 6_4:+52696909 | None:intergenic |
AGAGATTGATGAAGTTCAAA+GGG | 0.509523 | 6_4:+52696871 | None:intergenic |
GTAGGACTGTAGGTTCGGTT+GGG | 0.513758 | 6_4:+52696758 | None:intergenic |
TGTAGGACTGTAGGTTCGGT+TGG | 0.518008 | 6_4:+52696757 | None:intergenic |
GGGTTATGGTGGCTTTGGAA+TGG | 0.520808 | 6_4:+52696891 | None:intergenic |
TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 6_4:-52694974 | Msa0990650:CDS |
AGGACCGAGGCTTCTTGGCA+GGG | 0.533687 | 6_4:-52695314 | Msa0990650:CDS |
AAGGTGTAGGACTGTAGGTT+CGG | 0.544407 | 6_4:+52696753 | None:intergenic |
TATGGTGGCTTTGGAATGGA+TGG | 0.550702 | 6_4:+52696895 | None:intergenic |
CAATTCATGCATTGAAGTGG+TGG | 0.554056 | 6_4:-52696705 | Msa0990650:CDS |
AACTTTAGAAGATAGTAAGC+CGG | 0.555137 | 6_4:-52695079 | Msa0990650:CDS |
AAGGTAACCTCATACAAGAA+AGG | 0.558460 | 6_4:+52694940 | None:intergenic |
GAAAGAAGGTGTAGGACTGT+AGG | 0.562934 | 6_4:+52696748 | None:intergenic |
TCAACCCTGCCAAGAAGCCT+CGG | 0.575981 | 6_4:+52695310 | None:intergenic |
TCCCAATTCATGCATTGAAG+TGG | 0.578368 | 6_4:-52696708 | Msa0990650:CDS |
TGAAGTTCAAAGGGTTATGG+TGG | 0.583833 | 6_4:+52696880 | None:intergenic |
ATTAATTCACATAAGAAATG+AGG | 0.589943 | 6_4:+52696821 | None:intergenic |
AGTAGAGAAATTGAAACAAG+AGG | 0.594700 | 6_4:+52696674 | None:intergenic |
TGATGAAACATATTCTGACT+AGG | 0.610583 | 6_4:-52694860 | None:intergenic |
GGAGAAGTTGAGGAAGCATA+CGG | 0.617796 | 6_4:-52694964 | Msa0990650:CDS |
TTCTTATGTGAATTAATGTG+TGG | 0.619198 | 6_4:-52696815 | Msa0990650:CDS |
TGGCAGGGTTGACGATTCAG+GGG | 0.627660 | 6_4:-52695299 | Msa0990650:intron |
ATGGATGGCCGAGAAAAGAA+GGG | 0.629278 | 6_4:+52696910 | None:intergenic |
GAAAAGAAGGGAGAAATGAG+TGG | 0.632937 | 6_4:+52696922 | None:intergenic |
TGGGATAAGAAAGAAAATTG+GGG | 0.635478 | 6_4:+52696726 | None:intergenic |
GGTTCGGTTGGGACTAGGAG+AGG | 0.638556 | 6_4:+52696769 | None:intergenic |
TCATGCATTGAAGTGGTGGA+AGG | 0.653671 | 6_4:-52696701 | Msa0990650:CDS |
TAGGCAGGCAGTTAGGACCG+AGG | 0.670686 | 6_4:-52695327 | Msa0990650:intron |
AAATTGGGGAAAGAAGGTGT+AGG | 0.709182 | 6_4:+52696740 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAAGATTACATGTATCATTT+TGG | + | chr6_4:52694948-52694967 | None:intergenic | 20.0% |
!! | ATTAATTCACATAAGAAATG+AGG | + | chr6_4:52694974-52694993 | None:intergenic | 20.0% |
!! | TCAACTCCTTAATTAATTAA+TGG | - | chr6_4:52695239-52695258 | Msa0990650:intron | 20.0% |
!! | ATGCAACCATTAATTAATTA+AGG | + | chr6_4:52695248-52695267 | None:intergenic | 20.0% |
!! | AGATTAATTCATGAAACAAA+TGG | - | chr6_4:52695522-52695541 | Msa0990650:intron | 20.0% |
!!! | AAATTTTGTCTATTTTCCAA+TGG | + | chr6_4:52695716-52695735 | None:intergenic | 20.0% |
!! | TCAAAATAACTTAAAAGTCT+TGG | + | chr6_4:52696029-52696048 | None:intergenic | 20.0% |
!! | TTTATTACAAATTTCTACGA+AGG | - | chr6_4:52696219-52696238 | Msa0990650:intron | 20.0% |
!!! | TAAGATTACATGTATCATTT+TGG | + | chr6_4:52694948-52694967 | None:intergenic | 20.0% |
!! | ATTAATTCACATAAGAAATG+AGG | + | chr6_4:52694974-52694993 | None:intergenic | 20.0% |
!! | TCAACTCCTTAATTAATTAA+TGG | - | chr6_4:52695239-52695258 | Msa0990650:intron | 20.0% |
!! | ATGCAACCATTAATTAATTA+AGG | + | chr6_4:52695248-52695267 | None:intergenic | 20.0% |
!! | AGATTAATTCATGAAACAAA+TGG | - | chr6_4:52695522-52695541 | Msa0990650:intron | 20.0% |
!!! | AAATTTTGTCTATTTTCCAA+TGG | + | chr6_4:52695716-52695735 | None:intergenic | 20.0% |
!! | TCAAAATAACTTAAAAGTCT+TGG | + | chr6_4:52696029-52696048 | None:intergenic | 20.0% |
!! | TTTATTACAAATTTCTACGA+AGG | - | chr6_4:52696219-52696238 | Msa0990650:intron | 20.0% |
! | TTCTTATGTGAATTAATGTG+TGG | - | chr6_4:52694977-52694996 | Msa0990650:CDS | 25.0% |
! | TTGGGATAAGAAAGAAAATT+GGG | + | chr6_4:52695070-52695089 | None:intergenic | 25.0% |
! | ATTGGGATAAGAAAGAAAAT+TGG | + | chr6_4:52695071-52695090 | None:intergenic | 25.0% |
! | TTGTTTCAATTTCTCTACTT+TGG | - | chr6_4:52695122-52695141 | Msa0990650:intron | 25.0% |
! | TGTTTCAATTTCTCTACTTT+GGG | - | chr6_4:52695123-52695142 | Msa0990650:intron | 25.0% |
! | TTAATTAAGGAGTTGAAAGT+GGG | + | chr6_4:52695235-52695254 | None:intergenic | 25.0% |
! | ATTAATTAAGGAGTTGAAAG+TGG | + | chr6_4:52695236-52695255 | None:intergenic | 25.0% |
! | AATTAATTAATGGTTGCATG+TGG | - | chr6_4:52695249-52695268 | Msa0990650:intron | 25.0% |
!!! | TTAGAGTTGAATTTGTTGTT+TGG | - | chr6_4:52695433-52695452 | Msa0990650:intron | 25.0% |
! | ATTAATCTTGCACATAACAT+GGG | + | chr6_4:52695510-52695529 | None:intergenic | 25.0% |
! | AATTAATCTTGCACATAACA+TGG | + | chr6_4:52695511-52695530 | None:intergenic | 25.0% |
! | TTTAACGATGATAATCCATT+TGG | + | chr6_4:52695579-52695598 | None:intergenic | 25.0% |
! | ATCATCGTTAAAAGTGATTA+TGG | - | chr6_4:52695587-52695606 | Msa0990650:intron | 25.0% |
! | AATGTCAGTTAAAATTCGTA+TGG | - | chr6_4:52695627-52695646 | Msa0990650:intron | 25.0% |
!! | ATTTAACACGAAATTGACTT+TGG | - | chr6_4:52695732-52695751 | Msa0990650:intron | 25.0% |
!! | GACAGAAATTAACTTGAAAT+AGG | - | chr6_4:52695907-52695926 | Msa0990650:intron | 25.0% |
! | CTACTTGTAAATGTAACTTT+CGG | - | chr6_4:52695976-52695995 | Msa0990650:intron | 25.0% |
! | AATTTCTACGAAGGAATATT+CGG | - | chr6_4:52696228-52696247 | Msa0990650:intron | 25.0% |
! | ACCATTAATGTAAAAATCCA+GGG | + | chr6_4:52696571-52696590 | None:intergenic | 25.0% |
! | AATATCTTTATCCCATTCAA+AGG | + | chr6_4:52696874-52696893 | None:intergenic | 25.0% |
! | TTCTTATGTGAATTAATGTG+TGG | - | chr6_4:52694977-52694996 | Msa0990650:CDS | 25.0% |
! | TTGGGATAAGAAAGAAAATT+GGG | + | chr6_4:52695070-52695089 | None:intergenic | 25.0% |
! | ATTGGGATAAGAAAGAAAAT+TGG | + | chr6_4:52695071-52695090 | None:intergenic | 25.0% |
! | TTGTTTCAATTTCTCTACTT+TGG | - | chr6_4:52695122-52695141 | Msa0990650:intron | 25.0% |
! | TGTTTCAATTTCTCTACTTT+GGG | - | chr6_4:52695123-52695142 | Msa0990650:intron | 25.0% |
! | TTAATTAAGGAGTTGAAAGT+GGG | + | chr6_4:52695235-52695254 | None:intergenic | 25.0% |
! | ATTAATTAAGGAGTTGAAAG+TGG | + | chr6_4:52695236-52695255 | None:intergenic | 25.0% |
! | AATTAATTAATGGTTGCATG+TGG | - | chr6_4:52695249-52695268 | Msa0990650:intron | 25.0% |
!!! | TTAGAGTTGAATTTGTTGTT+TGG | - | chr6_4:52695433-52695452 | Msa0990650:intron | 25.0% |
! | ATTAATCTTGCACATAACAT+GGG | + | chr6_4:52695510-52695529 | None:intergenic | 25.0% |
! | AATTAATCTTGCACATAACA+TGG | + | chr6_4:52695511-52695530 | None:intergenic | 25.0% |
! | TTTAACGATGATAATCCATT+TGG | + | chr6_4:52695579-52695598 | None:intergenic | 25.0% |
! | ATCATCGTTAAAAGTGATTA+TGG | - | chr6_4:52695587-52695606 | Msa0990650:intron | 25.0% |
! | AATGTCAGTTAAAATTCGTA+TGG | - | chr6_4:52695627-52695646 | Msa0990650:intron | 25.0% |
!! | ATTTAACACGAAATTGACTT+TGG | - | chr6_4:52695732-52695751 | Msa0990650:intron | 25.0% |
!! | GACAGAAATTAACTTGAAAT+AGG | - | chr6_4:52695907-52695926 | Msa0990650:intron | 25.0% |
! | CTACTTGTAAATGTAACTTT+CGG | - | chr6_4:52695976-52695995 | Msa0990650:intron | 25.0% |
! | AATTTCTACGAAGGAATATT+CGG | - | chr6_4:52696228-52696247 | Msa0990650:intron | 25.0% |
! | ACCATTAATGTAAAAATCCA+GGG | + | chr6_4:52696571-52696590 | None:intergenic | 25.0% |
! | AATATCTTTATCCCATTCAA+AGG | + | chr6_4:52696874-52696893 | None:intergenic | 25.0% |
AGAGATTGATGAAGTTCAAA+GGG | + | chr6_4:52694924-52694943 | None:intergenic | 30.0% | |
TGGGATAAGAAAGAAAATTG+GGG | + | chr6_4:52695069-52695088 | None:intergenic | 30.0% | |
AGTAGAGAAATTGAAACAAG+AGG | + | chr6_4:52695121-52695140 | None:intergenic | 30.0% | |
ATACTTGAATTATTGAGCGT+TGG | - | chr6_4:52695292-52695311 | Msa0990650:intron | 30.0% | |
AGAATAGAAGGAGAAATTGA+AGG | - | chr6_4:52695331-52695350 | Msa0990650:intron | 30.0% | |
GAATAGAAGGAGAAATTGAA+GGG | - | chr6_4:52695332-52695351 | Msa0990650:intron | 30.0% | |
!! | AATTTGTTGTTTGGAGGTAA+TGG | - | chr6_4:52695442-52695461 | Msa0990650:intron | 30.0% |
!! | ATTTGTTGTTTGGAGGTAAT+GGG | - | chr6_4:52695443-52695462 | Msa0990650:intron | 30.0% |
!! | TCATGAAACAAATGGTTTTG+AGG | - | chr6_4:52695530-52695549 | Msa0990650:intron | 30.0% |
TCGTTAAAAGTGATTATGGA+TGG | - | chr6_4:52695591-52695610 | Msa0990650:intron | 30.0% | |
! | TACGTGATTCATTTTGTAGT+GGG | - | chr6_4:52695683-52695702 | Msa0990650:intron | 30.0% |
TCTATGTTCATACATCACTT+TGG | - | chr6_4:52695858-52695877 | Msa0990650:intron | 30.0% | |
AATTTCTGTCTTCTTTCTCA+TGG | + | chr6_4:52695897-52695916 | None:intergenic | 30.0% | |
TGAGTAGTCTAAGAATACAA+AGG | - | chr6_4:52696056-52696075 | Msa0990650:intron | 30.0% | |
GTTGAACATCAAAGGAAAAA+AGG | + | chr6_4:52696391-52696410 | None:intergenic | 30.0% | |
ATTTGTGTTCCAGATTGTTT+AGG | - | chr6_4:52696446-52696465 | Msa0990650:intron | 30.0% | |
!!! | GTTTTATTTTATACCAACCC+TGG | - | chr6_4:52696551-52696570 | Msa0990650:intron | 30.0% |
TTAATGTAAAAATCCAGGGT+TGG | + | chr6_4:52696567-52696586 | None:intergenic | 30.0% | |
! | ACCCTGGATTTTTACATTAA+TGG | - | chr6_4:52696567-52696586 | Msa0990650:intron | 30.0% |
CACCATTAATGTAAAAATCC+AGG | + | chr6_4:52696572-52696591 | None:intergenic | 30.0% | |
!! | GTGTGAAGTATACTTGTTTT+TGG | + | chr6_4:52696627-52696646 | None:intergenic | 30.0% |
ACGGAAAAAAAAAGATTGGT+TGG | - | chr6_4:52696656-52696675 | Msa0990650:CDS | 30.0% | |
! | AACTTTAGAAGATAGTAAGC+CGG | - | chr6_4:52696713-52696732 | Msa0990650:CDS | 30.0% |
ATTGTGTGTTTGATTCATCT+TGG | + | chr6_4:52696755-52696774 | None:intergenic | 30.0% | |
ATTGCAAATGACAATCTTGA+AGG | - | chr6_4:52696786-52696805 | Msa0990650:CDS | 30.0% | |
!!! | GGAAGTTTTGTTGATTTAGT+TGG | - | chr6_4:52696807-52696826 | Msa0990650:CDS | 30.0% |
TGATGAAACATATTCTGACT+AGG | - | chr6_4:52696932-52696951 | Msa0990650:five_prime_UTR | 30.0% | |
AGAGATTGATGAAGTTCAAA+GGG | + | chr6_4:52694924-52694943 | None:intergenic | 30.0% | |
TGGGATAAGAAAGAAAATTG+GGG | + | chr6_4:52695069-52695088 | None:intergenic | 30.0% | |
AGTAGAGAAATTGAAACAAG+AGG | + | chr6_4:52695121-52695140 | None:intergenic | 30.0% | |
ATACTTGAATTATTGAGCGT+TGG | - | chr6_4:52695292-52695311 | Msa0990650:intron | 30.0% | |
AGAATAGAAGGAGAAATTGA+AGG | - | chr6_4:52695331-52695350 | Msa0990650:intron | 30.0% | |
GAATAGAAGGAGAAATTGAA+GGG | - | chr6_4:52695332-52695351 | Msa0990650:intron | 30.0% | |
!! | AATTTGTTGTTTGGAGGTAA+TGG | - | chr6_4:52695442-52695461 | Msa0990650:intron | 30.0% |
!! | ATTTGTTGTTTGGAGGTAAT+GGG | - | chr6_4:52695443-52695462 | Msa0990650:intron | 30.0% |
!! | TCATGAAACAAATGGTTTTG+AGG | - | chr6_4:52695530-52695549 | Msa0990650:intron | 30.0% |
TCGTTAAAAGTGATTATGGA+TGG | - | chr6_4:52695591-52695610 | Msa0990650:intron | 30.0% | |
! | TACGTGATTCATTTTGTAGT+GGG | - | chr6_4:52695683-52695702 | Msa0990650:intron | 30.0% |
TCTATGTTCATACATCACTT+TGG | - | chr6_4:52695858-52695877 | Msa0990650:intron | 30.0% | |
AATTTCTGTCTTCTTTCTCA+TGG | + | chr6_4:52695897-52695916 | None:intergenic | 30.0% | |
TGAGTAGTCTAAGAATACAA+AGG | - | chr6_4:52696056-52696075 | Msa0990650:intron | 30.0% | |
GTTGAACATCAAAGGAAAAA+AGG | + | chr6_4:52696391-52696410 | None:intergenic | 30.0% | |
ATTTGTGTTCCAGATTGTTT+AGG | - | chr6_4:52696446-52696465 | Msa0990650:intron | 30.0% | |
!!! | GTTTTATTTTATACCAACCC+TGG | - | chr6_4:52696551-52696570 | Msa0990650:intron | 30.0% |
TTAATGTAAAAATCCAGGGT+TGG | + | chr6_4:52696567-52696586 | None:intergenic | 30.0% | |
! | ACCCTGGATTTTTACATTAA+TGG | - | chr6_4:52696567-52696586 | Msa0990650:intron | 30.0% |
CACCATTAATGTAAAAATCC+AGG | + | chr6_4:52696572-52696591 | None:intergenic | 30.0% | |
!! | GTGTGAAGTATACTTGTTTT+TGG | + | chr6_4:52696627-52696646 | None:intergenic | 30.0% |
ACGGAAAAAAAAAGATTGGT+TGG | - | chr6_4:52696656-52696675 | Msa0990650:CDS | 30.0% | |
! | AACTTTAGAAGATAGTAAGC+CGG | - | chr6_4:52696713-52696732 | Msa0990650:CDS | 30.0% |
ATTGTGTGTTTGATTCATCT+TGG | + | chr6_4:52696755-52696774 | None:intergenic | 30.0% | |
ATTGCAAATGACAATCTTGA+AGG | - | chr6_4:52696786-52696805 | Msa0990650:CDS | 30.0% | |
!!! | GGAAGTTTTGTTGATTTAGT+TGG | - | chr6_4:52696807-52696826 | Msa0990650:CDS | 30.0% |
! | TCATTTCTCCCTTCTTTTCT+CGG | - | chr6_4:52694874-52694893 | Msa0990650:CDS | 35.0% |
TGATGAAGTTCAAAGGGTTA+TGG | + | chr6_4:52694918-52694937 | None:intergenic | 35.0% | |
CAGAGATTGATGAAGTTCAA+AGG | + | chr6_4:52694925-52694944 | None:intergenic | 35.0% | |
GAAAGAAAATTGGGGAAAGA+AGG | + | chr6_4:52695061-52695080 | None:intergenic | 35.0% | |
ACCACTTCAATGCATGAATT+GGG | + | chr6_4:52695088-52695107 | None:intergenic | 35.0% | |
! | TTTGGGTTAAGATGAAGCTT+AGG | - | chr6_4:52695140-52695159 | Msa0990650:intron | 35.0% |
GCAAGAACAAGAAGAATAGA+AGG | - | chr6_4:52695319-52695338 | Msa0990650:CDS | 35.0% | |
!! | GAGTTGAATTTGTTGTTTGG+AGG | - | chr6_4:52695436-52695455 | Msa0990650:intron | 35.0% |
CTACAAAATGAATCACGTAC+AGG | + | chr6_4:52695682-52695701 | None:intergenic | 35.0% | |
! | GTACGTGATTCATTTTGTAG+TGG | - | chr6_4:52695682-52695701 | Msa0990650:intron | 35.0% |
!! | ACTTGAAATAGGCTTTGAGA+TGG | - | chr6_4:52695918-52695937 | Msa0990650:intron | 35.0% |
AATTGCTGCGTAGGAATATT+CGG | - | chr6_4:52696350-52696369 | Msa0990650:intron | 35.0% | |
! | GAATATTCGGTAAAGTACTC+AGG | - | chr6_4:52696241-52696260 | Msa0990650:intron | 35.0% |
! | AAGCACAAGTTGAACATCAA+AGG | + | chr6_4:52696399-52696418 | None:intergenic | 35.0% |
!! | ATTAATGGTGCTGCAAAGTT+TGG | - | chr6_4:52696582-52696601 | Msa0990650:intron | 35.0% |
! | CGTGACGGAAAAAAAAAGAT+TGG | - | chr6_4:52696652-52696671 | Msa0990650:intron | 35.0% |
GTGTTTGATTCATCTTGGTA+TGG | + | chr6_4:52696750-52696769 | None:intergenic | 35.0% | |
TGATTTAGTTGGAGAAGTTG+AGG | - | chr6_4:52696818-52696837 | Msa0990650:CDS | 35.0% | |
AAGGTAACCTCATACAAGAA+AGG | + | chr6_4:52696855-52696874 | None:intergenic | 35.0% | |
TGTATGAGGTTACCTTTGAA+TGG | - | chr6_4:52696859-52696878 | Msa0990650:exon | 35.0% | |
GTATGAGGTTACCTTTGAAT+GGG | - | chr6_4:52696860-52696879 | Msa0990650:exon | 35.0% | |
! | TCATTTCTCCCTTCTTTTCT+CGG | - | chr6_4:52694874-52694893 | Msa0990650:CDS | 35.0% |
TGATGAAGTTCAAAGGGTTA+TGG | + | chr6_4:52694918-52694937 | None:intergenic | 35.0% | |
CAGAGATTGATGAAGTTCAA+AGG | + | chr6_4:52694925-52694944 | None:intergenic | 35.0% | |
GAAAGAAAATTGGGGAAAGA+AGG | + | chr6_4:52695061-52695080 | None:intergenic | 35.0% | |
ACCACTTCAATGCATGAATT+GGG | + | chr6_4:52695088-52695107 | None:intergenic | 35.0% | |
! | TTTGGGTTAAGATGAAGCTT+AGG | - | chr6_4:52695140-52695159 | Msa0990650:intron | 35.0% |
GCAAGAACAAGAAGAATAGA+AGG | - | chr6_4:52695319-52695338 | Msa0990650:CDS | 35.0% | |
!! | GAGTTGAATTTGTTGTTTGG+AGG | - | chr6_4:52695436-52695455 | Msa0990650:intron | 35.0% |
CTACAAAATGAATCACGTAC+AGG | + | chr6_4:52695682-52695701 | None:intergenic | 35.0% | |
! | GTACGTGATTCATTTTGTAG+TGG | - | chr6_4:52695682-52695701 | Msa0990650:intron | 35.0% |
!! | ACTTGAAATAGGCTTTGAGA+TGG | - | chr6_4:52695918-52695937 | Msa0990650:intron | 35.0% |
AATTGCTGCGTAGGAATATT+CGG | - | chr6_4:52696350-52696369 | Msa0990650:intron | 35.0% | |
! | GAATATTCGGTAAAGTACTC+AGG | - | chr6_4:52696241-52696260 | Msa0990650:intron | 35.0% |
! | AAGCACAAGTTGAACATCAA+AGG | + | chr6_4:52696399-52696418 | None:intergenic | 35.0% |
!! | ATTAATGGTGCTGCAAAGTT+TGG | - | chr6_4:52696582-52696601 | Msa0990650:intron | 35.0% |
! | CGTGACGGAAAAAAAAAGAT+TGG | - | chr6_4:52696652-52696671 | Msa0990650:intron | 35.0% |
GTGTTTGATTCATCTTGGTA+TGG | + | chr6_4:52696750-52696769 | None:intergenic | 35.0% | |
TGATTTAGTTGGAGAAGTTG+AGG | - | chr6_4:52696818-52696837 | Msa0990650:CDS | 35.0% | |
AAGGTAACCTCATACAAGAA+AGG | + | chr6_4:52696855-52696874 | None:intergenic | 35.0% | |
TGTATGAGGTTACCTTTGAA+TGG | - | chr6_4:52696859-52696878 | Msa0990650:exon | 35.0% | |
GTATGAGGTTACCTTTGAAT+GGG | - | chr6_4:52696860-52696879 | Msa0990650:exon | 35.0% | |
AAGGGAGAAATGAGTGGATA+AGG | + | chr6_4:52694867-52694886 | None:intergenic | 40.0% | |
GAAAAGAAGGGAGAAATGAG+TGG | + | chr6_4:52694873-52694892 | None:intergenic | 40.0% | |
TGAAGTTCAAAGGGTTATGG+TGG | + | chr6_4:52694915-52694934 | None:intergenic | 40.0% | |
! | AAATTGGGGAAAGAAGGTGT+AGG | + | chr6_4:52695055-52695074 | None:intergenic | 40.0% |
TCCCAATTCATGCATTGAAG+TGG | - | chr6_4:52695084-52695103 | Msa0990650:CDS | 40.0% | |
CACCACTTCAATGCATGAAT+TGG | + | chr6_4:52695089-52695108 | None:intergenic | 40.0% | |
CAATTCATGCATTGAAGTGG+TGG | - | chr6_4:52695087-52695106 | Msa0990650:CDS | 40.0% | |
TCAGAGCTCTTGTTCATCAA+TGG | - | chr6_4:52695356-52695375 | Msa0990650:intron | 40.0% | |
TGGTTCATTCCCACTTGATA+TGG | - | chr6_4:52695379-52695398 | Msa0990650:intron | 40.0% | |
GAGAACTCACCATATCAAGT+GGG | + | chr6_4:52695391-52695410 | None:intergenic | 40.0% | |
AGAGAACTCACCATATCAAG+TGG | + | chr6_4:52695392-52695411 | None:intergenic | 40.0% | |
!! | TTGTTTGGAGGTAATGGGTT+TGG | - | chr6_4:52695448-52695467 | Msa0990650:intron | 40.0% |
!! | TGTTTGGAGGTAATGGGTTT+GGG | - | chr6_4:52695449-52695468 | Msa0990650:intron | 40.0% |
GGGACATGTTTGAGAAAAGT+AGG | - | chr6_4:52695469-52695488 | Msa0990650:intron | 40.0% | |
!!! | AAATGGTTTTGAGGCTGAGA+CGG | - | chr6_4:52695539-52695558 | Msa0990650:intron | 40.0% |
GTGAAGCAATGACATCCAAA+TGG | - | chr6_4:52695561-52695580 | Msa0990650:intron | 40.0% | |
AATTCGTATGGACCTGTTGT+CGG | - | chr6_4:52695639-52695658 | Msa0990650:intron | 40.0% | |
! | ATGACAGTTTTACCGACAAC+AGG | + | chr6_4:52695654-52695673 | None:intergenic | 40.0% |
! | TGTAGTGGGAATTGAACCAT+TGG | - | chr6_4:52695697-52695716 | Msa0990650:intron | 40.0% |
TCGGCAAGCAAATTCGAATT+TGG | - | chr6_4:52695995-52696014 | Msa0990650:intron | 40.0% | |
CGGCAAGCAAATTCGAATTT+GGG | - | chr6_4:52695996-52696015 | Msa0990650:intron | 40.0% | |
! | TGTTCTTGCGTTTTCGATCT+TGG | - | chr6_4:52696278-52696297 | Msa0990650:intron | 40.0% |
TACTTCACACAGTATCGTGA+CGG | - | chr6_4:52696637-52696656 | Msa0990650:intron | 40.0% | |
TGGTATGGATCTTCTTTCTC+CGG | + | chr6_4:52696735-52696754 | None:intergenic | 40.0% | |
ATACGGTCCTTTCTTGTATG+AGG | - | chr6_4:52696845-52696864 | Msa0990650:CDS | 40.0% | |
AAGGGAGAAATGAGTGGATA+AGG | + | chr6_4:52694867-52694886 | None:intergenic | 40.0% | |
GAAAAGAAGGGAGAAATGAG+TGG | + | chr6_4:52694873-52694892 | None:intergenic | 40.0% | |
TGAAGTTCAAAGGGTTATGG+TGG | + | chr6_4:52694915-52694934 | None:intergenic | 40.0% | |
! | AAATTGGGGAAAGAAGGTGT+AGG | + | chr6_4:52695055-52695074 | None:intergenic | 40.0% |
TCCCAATTCATGCATTGAAG+TGG | - | chr6_4:52695084-52695103 | Msa0990650:CDS | 40.0% | |
CACCACTTCAATGCATGAAT+TGG | + | chr6_4:52695089-52695108 | None:intergenic | 40.0% | |
CAATTCATGCATTGAAGTGG+TGG | - | chr6_4:52695087-52695106 | Msa0990650:CDS | 40.0% | |
TCAGAGCTCTTGTTCATCAA+TGG | - | chr6_4:52695356-52695375 | Msa0990650:intron | 40.0% | |
TGGTTCATTCCCACTTGATA+TGG | - | chr6_4:52695379-52695398 | Msa0990650:intron | 40.0% | |
GAGAACTCACCATATCAAGT+GGG | + | chr6_4:52695391-52695410 | None:intergenic | 40.0% | |
AGAGAACTCACCATATCAAG+TGG | + | chr6_4:52695392-52695411 | None:intergenic | 40.0% | |
!! | TTGTTTGGAGGTAATGGGTT+TGG | - | chr6_4:52695448-52695467 | Msa0990650:intron | 40.0% |
!! | TGTTTGGAGGTAATGGGTTT+GGG | - | chr6_4:52695449-52695468 | Msa0990650:intron | 40.0% |
GGGACATGTTTGAGAAAAGT+AGG | - | chr6_4:52695469-52695488 | Msa0990650:intron | 40.0% | |
!!! | AAATGGTTTTGAGGCTGAGA+CGG | - | chr6_4:52695539-52695558 | Msa0990650:intron | 40.0% |
GTGAAGCAATGACATCCAAA+TGG | - | chr6_4:52695561-52695580 | Msa0990650:intron | 40.0% | |
AATTCGTATGGACCTGTTGT+CGG | - | chr6_4:52695639-52695658 | Msa0990650:intron | 40.0% | |
! | ATGACAGTTTTACCGACAAC+AGG | + | chr6_4:52695654-52695673 | None:intergenic | 40.0% |
! | TGTAGTGGGAATTGAACCAT+TGG | - | chr6_4:52695697-52695716 | Msa0990650:intron | 40.0% |
TCGGCAAGCAAATTCGAATT+TGG | - | chr6_4:52695995-52696014 | Msa0990650:intron | 40.0% | |
CGGCAAGCAAATTCGAATTT+GGG | - | chr6_4:52695996-52696015 | Msa0990650:intron | 40.0% | |
! | TGTTCTTGCGTTTTCGATCT+TGG | - | chr6_4:52696278-52696297 | Msa0990650:intron | 40.0% |
TACTTCACACAGTATCGTGA+CGG | - | chr6_4:52696637-52696656 | Msa0990650:intron | 40.0% | |
TGGTATGGATCTTCTTTCTC+CGG | + | chr6_4:52696735-52696754 | None:intergenic | 40.0% | |
ATACGGTCCTTTCTTGTATG+AGG | - | chr6_4:52696845-52696864 | Msa0990650:CDS | 40.0% | |
ATGGATGGCCGAGAAAAGAA+GGG | + | chr6_4:52694885-52694904 | None:intergenic | 45.0% | |
AATGGATGGCCGAGAAAAGA+AGG | + | chr6_4:52694886-52694905 | None:intergenic | 45.0% | |
!! | TATGGTGGCTTTGGAATGGA+TGG | + | chr6_4:52694900-52694919 | None:intergenic | 45.0% |
TCAAAGGGTTATGGTGGCTT+TGG | + | chr6_4:52694909-52694928 | None:intergenic | 45.0% | |
AAGGTGTAGGACTGTAGGTT+CGG | + | chr6_4:52695042-52695061 | None:intergenic | 45.0% | |
! | GAAAGAAGGTGTAGGACTGT+AGG | + | chr6_4:52695047-52695066 | None:intergenic | 45.0% |
! | TCATGCATTGAAGTGGTGGA+AGG | - | chr6_4:52695091-52695110 | Msa0990650:CDS | 45.0% |
! | AGGTTTCGGTGCAAGAAGAA+TGG | + | chr6_4:52695199-52695218 | None:intergenic | 45.0% |
!! | AGTTGAAAGTGGGCTGAACA+GGG | + | chr6_4:52695225-52695244 | None:intergenic | 45.0% |
! | GCATGTGGATTTTCTTGCTC+AGG | - | chr6_4:52695264-52695283 | Msa0990650:intron | 45.0% |
GAGCTCTTGTTCATCAATGG+TGG | - | chr6_4:52695359-52695378 | Msa0990650:intron | 45.0% | |
GCGTGTTCGTGCATTTGAAA+CGG | - | chr6_4:52696305-52696324 | Msa0990650:intron | 45.0% | |
! | CGTGTTCGTGCATTTGAAAC+GGG | - | chr6_4:52696306-52696325 | Msa0990650:intron | 45.0% |
ACGTTCTGTAATTGCTGCGT+AGG | - | chr6_4:52696341-52696360 | Msa0990650:intron | 45.0% | |
GTGTTCCAGATTGTTTAGGC+AGG | - | chr6_4:52696450-52696469 | Msa0990650:intron | 45.0% | |
AACTGCCTGCCTAAACAATC+TGG | + | chr6_4:52696458-52696477 | None:intergenic | 45.0% | |
GATTGTTTAGGCAGGCAGTT+AGG | - | chr6_4:52696458-52696477 | Msa0990650:intron | 45.0% | |
GTTGGCTGTGATTAAGACCA+AGG | - | chr6_4:52696674-52696693 | Msa0990650:CDS | 45.0% | |
TTGAATTGTGCTTCTCGCCT+TGG | + | chr6_4:52696694-52696713 | None:intergenic | 45.0% | |
! | GGAGAAGTTGAGGAAGCATA+CGG | - | chr6_4:52696828-52696847 | Msa0990650:CDS | 45.0% |
ATGGATGGCCGAGAAAAGAA+GGG | + | chr6_4:52694885-52694904 | None:intergenic | 45.0% | |
AATGGATGGCCGAGAAAAGA+AGG | + | chr6_4:52694886-52694905 | None:intergenic | 45.0% | |
!! | TATGGTGGCTTTGGAATGGA+TGG | + | chr6_4:52694900-52694919 | None:intergenic | 45.0% |
TCAAAGGGTTATGGTGGCTT+TGG | + | chr6_4:52694909-52694928 | None:intergenic | 45.0% | |
AAGGTGTAGGACTGTAGGTT+CGG | + | chr6_4:52695042-52695061 | None:intergenic | 45.0% | |
! | GAAAGAAGGTGTAGGACTGT+AGG | + | chr6_4:52695047-52695066 | None:intergenic | 45.0% |
! | TCATGCATTGAAGTGGTGGA+AGG | - | chr6_4:52695091-52695110 | Msa0990650:CDS | 45.0% |
! | AGGTTTCGGTGCAAGAAGAA+TGG | + | chr6_4:52695199-52695218 | None:intergenic | 45.0% |
!! | AGTTGAAAGTGGGCTGAACA+GGG | + | chr6_4:52695225-52695244 | None:intergenic | 45.0% |
! | GCATGTGGATTTTCTTGCTC+AGG | - | chr6_4:52695264-52695283 | Msa0990650:intron | 45.0% |
GAGCTCTTGTTCATCAATGG+TGG | - | chr6_4:52695359-52695378 | Msa0990650:intron | 45.0% | |
GCGTGTTCGTGCATTTGAAA+CGG | - | chr6_4:52696305-52696324 | Msa0990650:intron | 45.0% | |
! | CGTGTTCGTGCATTTGAAAC+GGG | - | chr6_4:52696306-52696325 | Msa0990650:intron | 45.0% |
ACGTTCTGTAATTGCTGCGT+AGG | - | chr6_4:52696341-52696360 | Msa0990650:intron | 45.0% | |
GTGTTCCAGATTGTTTAGGC+AGG | - | chr6_4:52696450-52696469 | Msa0990650:intron | 45.0% | |
AACTGCCTGCCTAAACAATC+TGG | + | chr6_4:52696458-52696477 | None:intergenic | 45.0% | |
GATTGTTTAGGCAGGCAGTT+AGG | - | chr6_4:52696458-52696477 | Msa0990650:intron | 45.0% | |
GTTGGCTGTGATTAAGACCA+AGG | - | chr6_4:52696674-52696693 | Msa0990650:CDS | 45.0% | |
TTGAATTGTGCTTCTCGCCT+TGG | + | chr6_4:52696694-52696713 | None:intergenic | 45.0% | |
! | GGAGAAGTTGAGGAAGCATA+CGG | - | chr6_4:52696828-52696847 | Msa0990650:CDS | 45.0% |
!! | GGGTTATGGTGGCTTTGGAA+TGG | + | chr6_4:52694904-52694923 | None:intergenic | 50.0% |
! | GTAGGACTGTAGGTTCGGTT+GGG | + | chr6_4:52695037-52695056 | None:intergenic | 50.0% |
! | TGTAGGACTGTAGGTTCGGT+TGG | + | chr6_4:52695038-52695057 | None:intergenic | 50.0% |
GCTGAACAGGGGTTAGGTTT+CGG | + | chr6_4:52695213-52695232 | None:intergenic | 50.0% | |
!! | GTTGAAAGTGGGCTGAACAG+GGG | + | chr6_4:52695224-52695243 | None:intergenic | 50.0% |
!! | GAGTTGAAAGTGGGCTGAAC+AGG | + | chr6_4:52695226-52695245 | None:intergenic | 50.0% |
TTGGCAGGGTTGACGATTCA+GGG | - | chr6_4:52696492-52696511 | Msa0990650:intron | 50.0% | |
!! | GGGTTATGGTGGCTTTGGAA+TGG | + | chr6_4:52694904-52694923 | None:intergenic | 50.0% |
! | GTAGGACTGTAGGTTCGGTT+GGG | + | chr6_4:52695037-52695056 | None:intergenic | 50.0% |
! | TGTAGGACTGTAGGTTCGGT+TGG | + | chr6_4:52695038-52695057 | None:intergenic | 50.0% |
GCTGAACAGGGGTTAGGTTT+CGG | + | chr6_4:52695213-52695232 | None:intergenic | 50.0% | |
!! | GTTGAAAGTGGGCTGAACAG+GGG | + | chr6_4:52695224-52695243 | None:intergenic | 50.0% |
!! | GAGTTGAAAGTGGGCTGAAC+AGG | + | chr6_4:52695226-52695245 | None:intergenic | 50.0% |
TTGGCAGGGTTGACGATTCA+GGG | - | chr6_4:52696492-52696511 | Msa0990650:intron | 50.0% | |
! | CTGTAGGTTCGGTTGGGACT+AGG | + | chr6_4:52695031-52695050 | None:intergenic | 55.0% |
!! | AAGTGGGCTGAACAGGGGTT+AGG | + | chr6_4:52695219-52695238 | None:intergenic | 55.0% |
CAGTTAGGACCGAGGCTTCT+TGG | - | chr6_4:52696473-52696492 | Msa0990650:intron | 55.0% | |
TCAACCCTGCCAAGAAGCCT+CGG | + | chr6_4:52696485-52696504 | None:intergenic | 55.0% | |
CTTGGCAGGGTTGACGATTC+AGG | - | chr6_4:52696491-52696510 | Msa0990650:intron | 55.0% | |
TGGCAGGGTTGACGATTCAG+GGG | - | chr6_4:52696493-52696512 | Msa0990650:intron | 55.0% | |
! | CTGTAGGTTCGGTTGGGACT+AGG | + | chr6_4:52695031-52695050 | None:intergenic | 55.0% |
!! | AAGTGGGCTGAACAGGGGTT+AGG | + | chr6_4:52695219-52695238 | None:intergenic | 55.0% |
CAGTTAGGACCGAGGCTTCT+TGG | - | chr6_4:52696473-52696492 | Msa0990650:intron | 55.0% | |
TCAACCCTGCCAAGAAGCCT+CGG | + | chr6_4:52696485-52696504 | None:intergenic | 55.0% | |
CTTGGCAGGGTTGACGATTC+AGG | - | chr6_4:52696491-52696510 | Msa0990650:intron | 55.0% | |
TGGCAGGGTTGACGATTCAG+GGG | - | chr6_4:52696493-52696512 | Msa0990650:intron | 55.0% | |
! | GGTTCGGTTGGGACTAGGAG+AGG | + | chr6_4:52695026-52695045 | None:intergenic | 60.0% |
TAGGCAGGCAGTTAGGACCG+AGG | - | chr6_4:52696465-52696484 | Msa0990650:intron | 60.0% | |
TAGGACCGAGGCTTCTTGGC+AGG | - | chr6_4:52696477-52696496 | Msa0990650:intron | 60.0% | |
AGGACCGAGGCTTCTTGGCA+GGG | - | chr6_4:52696478-52696497 | Msa0990650:intron | 60.0% | |
! | GGTTCGGTTGGGACTAGGAG+AGG | + | chr6_4:52695026-52695045 | None:intergenic | 60.0% |
TAGGCAGGCAGTTAGGACCG+AGG | - | chr6_4:52696465-52696484 | Msa0990650:intron | 60.0% | |
TAGGACCGAGGCTTCTTGGC+AGG | - | chr6_4:52696477-52696496 | Msa0990650:intron | 60.0% | |
AGGACCGAGGCTTCTTGGCA+GGG | - | chr6_4:52696478-52696497 | Msa0990650:intron | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 52694861 | 52696953 | 52694861 | ID=Msa0990650;Name=Msa0990650 |
chr6_4 | mRNA | 52694861 | 52696953 | 52694861 | ID=Msa0990650-mRNA-1;Parent=Msa0990650;Name=Msa0990650-mRNA-1;_AED=0.29;_eAED=0.35;_QI=89|0|0.33|1|1|1|3|0|172 |
chr6_4 | exon | 52694861 | 52695124 | 52694861 | ID=Msa0990650-mRNA-1:exon:11030;Parent=Msa0990650-mRNA-1 |
chr6_4 | exon | 52695300 | 52695342 | 52695300 | ID=Msa0990650-mRNA-1:exon:11029;Parent=Msa0990650-mRNA-1 |
chr6_4 | exon | 52696653 | 52696953 | 52696653 | ID=Msa0990650-mRNA-1:exon:11028;Parent=Msa0990650-mRNA-1 |
chr6_4 | five_prime_UTR | 52696865 | 52696953 | 52696865 | ID=Msa0990650-mRNA-1:five_prime_utr;Parent=Msa0990650-mRNA-1 |
chr6_4 | CDS | 52696653 | 52696864 | 52696653 | ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1 |
chr6_4 | CDS | 52695300 | 52695342 | 52695300 | ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1 |
chr6_4 | CDS | 52694861 | 52695124 | 52694861 | ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1 |
Gene Sequence |
Protein sequence |