AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0990650


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 57 sgRNAs with CRISPR-Local

Find 275 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGCAGGGTTGACGATTC+AGG 0.139753 6_4:-52695301 Msa0990650:CDS
TAAGATTACATGTATCATTT+TGG 0.253899 6_4:+52696847 None:intergenic
TGTTTCAATTTCTCTACTTT+GGG 0.267804 6_4:-52696669 Msa0990650:CDS
CACCACTTCAATGCATGAAT+TGG 0.272830 6_4:+52696706 None:intergenic
ATTGGGATAAGAAAGAAAAT+TGG 0.309564 6_4:+52696724 None:intergenic
TTGTTTCAATTTCTCTACTT+TGG 0.314070 6_4:-52696670 Msa0990650:CDS
TTGGGATAAGAAAGAAAATT+GGG 0.319969 6_4:+52696725 None:intergenic
TCAAAGGGTTATGGTGGCTT+TGG 0.352518 6_4:+52696886 None:intergenic
CAGTTAGGACCGAGGCTTCT+TGG 0.357951 6_4:-52695319 Msa0990650:CDS
TGATGAAGTTCAAAGGGTTA+TGG 0.383423 6_4:+52696877 None:intergenic
TTGAATTGTGCTTCTCGCCT+TGG 0.392592 6_4:+52695101 None:intergenic
ATACGGTCCTTTCTTGTATG+AGG 0.404809 6_4:-52694947 Msa0990650:CDS
TGTATGAGGTTACCTTTGAA+TGG 0.410546 6_4:-52694933 Msa0990650:CDS
TAGGACCGAGGCTTCTTGGC+AGG 0.415660 6_4:-52695315 Msa0990650:CDS
ATTGTGTGTTTGATTCATCT+TGG 0.420416 6_4:+52695040 None:intergenic
AAGGGAGAAATGAGTGGATA+AGG 0.431991 6_4:+52696928 None:intergenic
GATTGTTTAGGCAGGCAGTT+AGG 0.435522 6_4:-52695334 Msa0990650:intron
TTGGCAGGGTTGACGATTCA+GGG 0.436084 6_4:-52695300 Msa0990650:CDS
TGGTATGGATCTTCTTTCTC+CGG 0.436189 6_4:+52695060 None:intergenic
CTGTAGGTTCGGTTGGGACT+AGG 0.439250 6_4:+52696764 None:intergenic
TTTGGGTTAAGATGAAGCTT+AGG 0.452836 6_4:-52696652 Msa0990650:intron
ACCACTTCAATGCATGAATT+GGG 0.454441 6_4:+52696707 None:intergenic
GTATGAGGTTACCTTTGAAT+GGG 0.455125 6_4:-52694932 Msa0990650:CDS
ATTGCAAATGACAATCTTGA+AGG 0.456999 6_4:-52695006 Msa0990650:CDS
GTGTTTGATTCATCTTGGTA+TGG 0.467203 6_4:+52695045 None:intergenic
GAAAGAAAATTGGGGAAAGA+AGG 0.470391 6_4:+52696734 None:intergenic
AATATCTTTATCCCATTCAA+AGG 0.483583 6_4:+52694921 None:intergenic
CAGAGATTGATGAAGTTCAA+AGG 0.486977 6_4:+52696870 None:intergenic
AATGGATGGCCGAGAAAAGA+AGG 0.495594 6_4:+52696909 None:intergenic
AGAGATTGATGAAGTTCAAA+GGG 0.509523 6_4:+52696871 None:intergenic
GTAGGACTGTAGGTTCGGTT+GGG 0.513758 6_4:+52696758 None:intergenic
TGTAGGACTGTAGGTTCGGT+TGG 0.518008 6_4:+52696757 None:intergenic
GGGTTATGGTGGCTTTGGAA+TGG 0.520808 6_4:+52696891 None:intergenic
TGATTTAGTTGGAGAAGTTG+AGG 0.526516 6_4:-52694974 Msa0990650:CDS
AGGACCGAGGCTTCTTGGCA+GGG 0.533687 6_4:-52695314 Msa0990650:CDS
AAGGTGTAGGACTGTAGGTT+CGG 0.544407 6_4:+52696753 None:intergenic
TATGGTGGCTTTGGAATGGA+TGG 0.550702 6_4:+52696895 None:intergenic
CAATTCATGCATTGAAGTGG+TGG 0.554056 6_4:-52696705 Msa0990650:CDS
AACTTTAGAAGATAGTAAGC+CGG 0.555137 6_4:-52695079 Msa0990650:CDS
AAGGTAACCTCATACAAGAA+AGG 0.558460 6_4:+52694940 None:intergenic
GAAAGAAGGTGTAGGACTGT+AGG 0.562934 6_4:+52696748 None:intergenic
TCAACCCTGCCAAGAAGCCT+CGG 0.575981 6_4:+52695310 None:intergenic
TCCCAATTCATGCATTGAAG+TGG 0.578368 6_4:-52696708 Msa0990650:CDS
TGAAGTTCAAAGGGTTATGG+TGG 0.583833 6_4:+52696880 None:intergenic
ATTAATTCACATAAGAAATG+AGG 0.589943 6_4:+52696821 None:intergenic
AGTAGAGAAATTGAAACAAG+AGG 0.594700 6_4:+52696674 None:intergenic
TGATGAAACATATTCTGACT+AGG 0.610583 6_4:-52694860 None:intergenic
GGAGAAGTTGAGGAAGCATA+CGG 0.617796 6_4:-52694964 Msa0990650:CDS
TTCTTATGTGAATTAATGTG+TGG 0.619198 6_4:-52696815 Msa0990650:CDS
TGGCAGGGTTGACGATTCAG+GGG 0.627660 6_4:-52695299 Msa0990650:intron
ATGGATGGCCGAGAAAAGAA+GGG 0.629278 6_4:+52696910 None:intergenic
GAAAAGAAGGGAGAAATGAG+TGG 0.632937 6_4:+52696922 None:intergenic
TGGGATAAGAAAGAAAATTG+GGG 0.635478 6_4:+52696726 None:intergenic
GGTTCGGTTGGGACTAGGAG+AGG 0.638556 6_4:+52696769 None:intergenic
TCATGCATTGAAGTGGTGGA+AGG 0.653671 6_4:-52696701 Msa0990650:CDS
TAGGCAGGCAGTTAGGACCG+AGG 0.670686 6_4:-52695327 Msa0990650:intron
AAATTGGGGAAAGAAGGTGT+AGG 0.709182 6_4:+52696740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGATTACATGTATCATTT+TGG + chr6_4:52694948-52694967 None:intergenic 20.0%
!! ATTAATTCACATAAGAAATG+AGG + chr6_4:52694974-52694993 None:intergenic 20.0%
!! TCAACTCCTTAATTAATTAA+TGG - chr6_4:52695239-52695258 Msa0990650:intron 20.0%
!! ATGCAACCATTAATTAATTA+AGG + chr6_4:52695248-52695267 None:intergenic 20.0%
!! AGATTAATTCATGAAACAAA+TGG - chr6_4:52695522-52695541 Msa0990650:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr6_4:52695716-52695735 None:intergenic 20.0%
!! TCAAAATAACTTAAAAGTCT+TGG + chr6_4:52696029-52696048 None:intergenic 20.0%
!! TTTATTACAAATTTCTACGA+AGG - chr6_4:52696219-52696238 Msa0990650:intron 20.0%
!!! TAAGATTACATGTATCATTT+TGG + chr6_4:52694948-52694967 None:intergenic 20.0%
!! ATTAATTCACATAAGAAATG+AGG + chr6_4:52694974-52694993 None:intergenic 20.0%
!! TCAACTCCTTAATTAATTAA+TGG - chr6_4:52695239-52695258 Msa0990650:intron 20.0%
!! ATGCAACCATTAATTAATTA+AGG + chr6_4:52695248-52695267 None:intergenic 20.0%
!! AGATTAATTCATGAAACAAA+TGG - chr6_4:52695522-52695541 Msa0990650:intron 20.0%
!!! AAATTTTGTCTATTTTCCAA+TGG + chr6_4:52695716-52695735 None:intergenic 20.0%
!! TCAAAATAACTTAAAAGTCT+TGG + chr6_4:52696029-52696048 None:intergenic 20.0%
!! TTTATTACAAATTTCTACGA+AGG - chr6_4:52696219-52696238 Msa0990650:intron 20.0%
! TTCTTATGTGAATTAATGTG+TGG - chr6_4:52694977-52694996 Msa0990650:CDS 25.0%
! TTGGGATAAGAAAGAAAATT+GGG + chr6_4:52695070-52695089 None:intergenic 25.0%
! ATTGGGATAAGAAAGAAAAT+TGG + chr6_4:52695071-52695090 None:intergenic 25.0%
! TTGTTTCAATTTCTCTACTT+TGG - chr6_4:52695122-52695141 Msa0990650:intron 25.0%
! TGTTTCAATTTCTCTACTTT+GGG - chr6_4:52695123-52695142 Msa0990650:intron 25.0%
! TTAATTAAGGAGTTGAAAGT+GGG + chr6_4:52695235-52695254 None:intergenic 25.0%
! ATTAATTAAGGAGTTGAAAG+TGG + chr6_4:52695236-52695255 None:intergenic 25.0%
! AATTAATTAATGGTTGCATG+TGG - chr6_4:52695249-52695268 Msa0990650:intron 25.0%
!!! TTAGAGTTGAATTTGTTGTT+TGG - chr6_4:52695433-52695452 Msa0990650:intron 25.0%
! ATTAATCTTGCACATAACAT+GGG + chr6_4:52695510-52695529 None:intergenic 25.0%
! AATTAATCTTGCACATAACA+TGG + chr6_4:52695511-52695530 None:intergenic 25.0%
! TTTAACGATGATAATCCATT+TGG + chr6_4:52695579-52695598 None:intergenic 25.0%
! ATCATCGTTAAAAGTGATTA+TGG - chr6_4:52695587-52695606 Msa0990650:intron 25.0%
! AATGTCAGTTAAAATTCGTA+TGG - chr6_4:52695627-52695646 Msa0990650:intron 25.0%
!! ATTTAACACGAAATTGACTT+TGG - chr6_4:52695732-52695751 Msa0990650:intron 25.0%
!! GACAGAAATTAACTTGAAAT+AGG - chr6_4:52695907-52695926 Msa0990650:intron 25.0%
! CTACTTGTAAATGTAACTTT+CGG - chr6_4:52695976-52695995 Msa0990650:intron 25.0%
! AATTTCTACGAAGGAATATT+CGG - chr6_4:52696228-52696247 Msa0990650:intron 25.0%
! ACCATTAATGTAAAAATCCA+GGG + chr6_4:52696571-52696590 None:intergenic 25.0%
! AATATCTTTATCCCATTCAA+AGG + chr6_4:52696874-52696893 None:intergenic 25.0%
! TTCTTATGTGAATTAATGTG+TGG - chr6_4:52694977-52694996 Msa0990650:CDS 25.0%
! TTGGGATAAGAAAGAAAATT+GGG + chr6_4:52695070-52695089 None:intergenic 25.0%
! ATTGGGATAAGAAAGAAAAT+TGG + chr6_4:52695071-52695090 None:intergenic 25.0%
! TTGTTTCAATTTCTCTACTT+TGG - chr6_4:52695122-52695141 Msa0990650:intron 25.0%
! TGTTTCAATTTCTCTACTTT+GGG - chr6_4:52695123-52695142 Msa0990650:intron 25.0%
! TTAATTAAGGAGTTGAAAGT+GGG + chr6_4:52695235-52695254 None:intergenic 25.0%
! ATTAATTAAGGAGTTGAAAG+TGG + chr6_4:52695236-52695255 None:intergenic 25.0%
! AATTAATTAATGGTTGCATG+TGG - chr6_4:52695249-52695268 Msa0990650:intron 25.0%
!!! TTAGAGTTGAATTTGTTGTT+TGG - chr6_4:52695433-52695452 Msa0990650:intron 25.0%
! ATTAATCTTGCACATAACAT+GGG + chr6_4:52695510-52695529 None:intergenic 25.0%
! AATTAATCTTGCACATAACA+TGG + chr6_4:52695511-52695530 None:intergenic 25.0%
! TTTAACGATGATAATCCATT+TGG + chr6_4:52695579-52695598 None:intergenic 25.0%
! ATCATCGTTAAAAGTGATTA+TGG - chr6_4:52695587-52695606 Msa0990650:intron 25.0%
! AATGTCAGTTAAAATTCGTA+TGG - chr6_4:52695627-52695646 Msa0990650:intron 25.0%
!! ATTTAACACGAAATTGACTT+TGG - chr6_4:52695732-52695751 Msa0990650:intron 25.0%
!! GACAGAAATTAACTTGAAAT+AGG - chr6_4:52695907-52695926 Msa0990650:intron 25.0%
! CTACTTGTAAATGTAACTTT+CGG - chr6_4:52695976-52695995 Msa0990650:intron 25.0%
! AATTTCTACGAAGGAATATT+CGG - chr6_4:52696228-52696247 Msa0990650:intron 25.0%
! ACCATTAATGTAAAAATCCA+GGG + chr6_4:52696571-52696590 None:intergenic 25.0%
! AATATCTTTATCCCATTCAA+AGG + chr6_4:52696874-52696893 None:intergenic 25.0%
AGAGATTGATGAAGTTCAAA+GGG + chr6_4:52694924-52694943 None:intergenic 30.0%
TGGGATAAGAAAGAAAATTG+GGG + chr6_4:52695069-52695088 None:intergenic 30.0%
AGTAGAGAAATTGAAACAAG+AGG + chr6_4:52695121-52695140 None:intergenic 30.0%
ATACTTGAATTATTGAGCGT+TGG - chr6_4:52695292-52695311 Msa0990650:intron 30.0%
AGAATAGAAGGAGAAATTGA+AGG - chr6_4:52695331-52695350 Msa0990650:intron 30.0%
GAATAGAAGGAGAAATTGAA+GGG - chr6_4:52695332-52695351 Msa0990650:intron 30.0%
!! AATTTGTTGTTTGGAGGTAA+TGG - chr6_4:52695442-52695461 Msa0990650:intron 30.0%
!! ATTTGTTGTTTGGAGGTAAT+GGG - chr6_4:52695443-52695462 Msa0990650:intron 30.0%
!! TCATGAAACAAATGGTTTTG+AGG - chr6_4:52695530-52695549 Msa0990650:intron 30.0%
TCGTTAAAAGTGATTATGGA+TGG - chr6_4:52695591-52695610 Msa0990650:intron 30.0%
! TACGTGATTCATTTTGTAGT+GGG - chr6_4:52695683-52695702 Msa0990650:intron 30.0%
TCTATGTTCATACATCACTT+TGG - chr6_4:52695858-52695877 Msa0990650:intron 30.0%
AATTTCTGTCTTCTTTCTCA+TGG + chr6_4:52695897-52695916 None:intergenic 30.0%
TGAGTAGTCTAAGAATACAA+AGG - chr6_4:52696056-52696075 Msa0990650:intron 30.0%
GTTGAACATCAAAGGAAAAA+AGG + chr6_4:52696391-52696410 None:intergenic 30.0%
ATTTGTGTTCCAGATTGTTT+AGG - chr6_4:52696446-52696465 Msa0990650:intron 30.0%
!!! GTTTTATTTTATACCAACCC+TGG - chr6_4:52696551-52696570 Msa0990650:intron 30.0%
TTAATGTAAAAATCCAGGGT+TGG + chr6_4:52696567-52696586 None:intergenic 30.0%
! ACCCTGGATTTTTACATTAA+TGG - chr6_4:52696567-52696586 Msa0990650:intron 30.0%
CACCATTAATGTAAAAATCC+AGG + chr6_4:52696572-52696591 None:intergenic 30.0%
!! GTGTGAAGTATACTTGTTTT+TGG + chr6_4:52696627-52696646 None:intergenic 30.0%
ACGGAAAAAAAAAGATTGGT+TGG - chr6_4:52696656-52696675 Msa0990650:CDS 30.0%
! AACTTTAGAAGATAGTAAGC+CGG - chr6_4:52696713-52696732 Msa0990650:CDS 30.0%
ATTGTGTGTTTGATTCATCT+TGG + chr6_4:52696755-52696774 None:intergenic 30.0%
ATTGCAAATGACAATCTTGA+AGG - chr6_4:52696786-52696805 Msa0990650:CDS 30.0%
!!! GGAAGTTTTGTTGATTTAGT+TGG - chr6_4:52696807-52696826 Msa0990650:CDS 30.0%
TGATGAAACATATTCTGACT+AGG - chr6_4:52696932-52696951 Msa0990650:five_prime_UTR 30.0%
AGAGATTGATGAAGTTCAAA+GGG + chr6_4:52694924-52694943 None:intergenic 30.0%
TGGGATAAGAAAGAAAATTG+GGG + chr6_4:52695069-52695088 None:intergenic 30.0%
AGTAGAGAAATTGAAACAAG+AGG + chr6_4:52695121-52695140 None:intergenic 30.0%
ATACTTGAATTATTGAGCGT+TGG - chr6_4:52695292-52695311 Msa0990650:intron 30.0%
AGAATAGAAGGAGAAATTGA+AGG - chr6_4:52695331-52695350 Msa0990650:intron 30.0%
GAATAGAAGGAGAAATTGAA+GGG - chr6_4:52695332-52695351 Msa0990650:intron 30.0%
!! AATTTGTTGTTTGGAGGTAA+TGG - chr6_4:52695442-52695461 Msa0990650:intron 30.0%
!! ATTTGTTGTTTGGAGGTAAT+GGG - chr6_4:52695443-52695462 Msa0990650:intron 30.0%
!! TCATGAAACAAATGGTTTTG+AGG - chr6_4:52695530-52695549 Msa0990650:intron 30.0%
TCGTTAAAAGTGATTATGGA+TGG - chr6_4:52695591-52695610 Msa0990650:intron 30.0%
! TACGTGATTCATTTTGTAGT+GGG - chr6_4:52695683-52695702 Msa0990650:intron 30.0%
TCTATGTTCATACATCACTT+TGG - chr6_4:52695858-52695877 Msa0990650:intron 30.0%
AATTTCTGTCTTCTTTCTCA+TGG + chr6_4:52695897-52695916 None:intergenic 30.0%
TGAGTAGTCTAAGAATACAA+AGG - chr6_4:52696056-52696075 Msa0990650:intron 30.0%
GTTGAACATCAAAGGAAAAA+AGG + chr6_4:52696391-52696410 None:intergenic 30.0%
ATTTGTGTTCCAGATTGTTT+AGG - chr6_4:52696446-52696465 Msa0990650:intron 30.0%
!!! GTTTTATTTTATACCAACCC+TGG - chr6_4:52696551-52696570 Msa0990650:intron 30.0%
TTAATGTAAAAATCCAGGGT+TGG + chr6_4:52696567-52696586 None:intergenic 30.0%
! ACCCTGGATTTTTACATTAA+TGG - chr6_4:52696567-52696586 Msa0990650:intron 30.0%
CACCATTAATGTAAAAATCC+AGG + chr6_4:52696572-52696591 None:intergenic 30.0%
!! GTGTGAAGTATACTTGTTTT+TGG + chr6_4:52696627-52696646 None:intergenic 30.0%
ACGGAAAAAAAAAGATTGGT+TGG - chr6_4:52696656-52696675 Msa0990650:CDS 30.0%
! AACTTTAGAAGATAGTAAGC+CGG - chr6_4:52696713-52696732 Msa0990650:CDS 30.0%
ATTGTGTGTTTGATTCATCT+TGG + chr6_4:52696755-52696774 None:intergenic 30.0%
ATTGCAAATGACAATCTTGA+AGG - chr6_4:52696786-52696805 Msa0990650:CDS 30.0%
!!! GGAAGTTTTGTTGATTTAGT+TGG - chr6_4:52696807-52696826 Msa0990650:CDS 30.0%
! TCATTTCTCCCTTCTTTTCT+CGG - chr6_4:52694874-52694893 Msa0990650:CDS 35.0%
TGATGAAGTTCAAAGGGTTA+TGG + chr6_4:52694918-52694937 None:intergenic 35.0%
CAGAGATTGATGAAGTTCAA+AGG + chr6_4:52694925-52694944 None:intergenic 35.0%
GAAAGAAAATTGGGGAAAGA+AGG + chr6_4:52695061-52695080 None:intergenic 35.0%
ACCACTTCAATGCATGAATT+GGG + chr6_4:52695088-52695107 None:intergenic 35.0%
! TTTGGGTTAAGATGAAGCTT+AGG - chr6_4:52695140-52695159 Msa0990650:intron 35.0%
GCAAGAACAAGAAGAATAGA+AGG - chr6_4:52695319-52695338 Msa0990650:CDS 35.0%
!! GAGTTGAATTTGTTGTTTGG+AGG - chr6_4:52695436-52695455 Msa0990650:intron 35.0%
CTACAAAATGAATCACGTAC+AGG + chr6_4:52695682-52695701 None:intergenic 35.0%
! GTACGTGATTCATTTTGTAG+TGG - chr6_4:52695682-52695701 Msa0990650:intron 35.0%
!! ACTTGAAATAGGCTTTGAGA+TGG - chr6_4:52695918-52695937 Msa0990650:intron 35.0%
AATTGCTGCGTAGGAATATT+CGG - chr6_4:52696350-52696369 Msa0990650:intron 35.0%
! GAATATTCGGTAAAGTACTC+AGG - chr6_4:52696241-52696260 Msa0990650:intron 35.0%
! AAGCACAAGTTGAACATCAA+AGG + chr6_4:52696399-52696418 None:intergenic 35.0%
!! ATTAATGGTGCTGCAAAGTT+TGG - chr6_4:52696582-52696601 Msa0990650:intron 35.0%
! CGTGACGGAAAAAAAAAGAT+TGG - chr6_4:52696652-52696671 Msa0990650:intron 35.0%
GTGTTTGATTCATCTTGGTA+TGG + chr6_4:52696750-52696769 None:intergenic 35.0%
TGATTTAGTTGGAGAAGTTG+AGG - chr6_4:52696818-52696837 Msa0990650:CDS 35.0%
AAGGTAACCTCATACAAGAA+AGG + chr6_4:52696855-52696874 None:intergenic 35.0%
TGTATGAGGTTACCTTTGAA+TGG - chr6_4:52696859-52696878 Msa0990650:exon 35.0%
GTATGAGGTTACCTTTGAAT+GGG - chr6_4:52696860-52696879 Msa0990650:exon 35.0%
! TCATTTCTCCCTTCTTTTCT+CGG - chr6_4:52694874-52694893 Msa0990650:CDS 35.0%
TGATGAAGTTCAAAGGGTTA+TGG + chr6_4:52694918-52694937 None:intergenic 35.0%
CAGAGATTGATGAAGTTCAA+AGG + chr6_4:52694925-52694944 None:intergenic 35.0%
GAAAGAAAATTGGGGAAAGA+AGG + chr6_4:52695061-52695080 None:intergenic 35.0%
ACCACTTCAATGCATGAATT+GGG + chr6_4:52695088-52695107 None:intergenic 35.0%
! TTTGGGTTAAGATGAAGCTT+AGG - chr6_4:52695140-52695159 Msa0990650:intron 35.0%
GCAAGAACAAGAAGAATAGA+AGG - chr6_4:52695319-52695338 Msa0990650:CDS 35.0%
!! GAGTTGAATTTGTTGTTTGG+AGG - chr6_4:52695436-52695455 Msa0990650:intron 35.0%
CTACAAAATGAATCACGTAC+AGG + chr6_4:52695682-52695701 None:intergenic 35.0%
! GTACGTGATTCATTTTGTAG+TGG - chr6_4:52695682-52695701 Msa0990650:intron 35.0%
!! ACTTGAAATAGGCTTTGAGA+TGG - chr6_4:52695918-52695937 Msa0990650:intron 35.0%
AATTGCTGCGTAGGAATATT+CGG - chr6_4:52696350-52696369 Msa0990650:intron 35.0%
! GAATATTCGGTAAAGTACTC+AGG - chr6_4:52696241-52696260 Msa0990650:intron 35.0%
! AAGCACAAGTTGAACATCAA+AGG + chr6_4:52696399-52696418 None:intergenic 35.0%
!! ATTAATGGTGCTGCAAAGTT+TGG - chr6_4:52696582-52696601 Msa0990650:intron 35.0%
! CGTGACGGAAAAAAAAAGAT+TGG - chr6_4:52696652-52696671 Msa0990650:intron 35.0%
GTGTTTGATTCATCTTGGTA+TGG + chr6_4:52696750-52696769 None:intergenic 35.0%
TGATTTAGTTGGAGAAGTTG+AGG - chr6_4:52696818-52696837 Msa0990650:CDS 35.0%
AAGGTAACCTCATACAAGAA+AGG + chr6_4:52696855-52696874 None:intergenic 35.0%
TGTATGAGGTTACCTTTGAA+TGG - chr6_4:52696859-52696878 Msa0990650:exon 35.0%
GTATGAGGTTACCTTTGAAT+GGG - chr6_4:52696860-52696879 Msa0990650:exon 35.0%
AAGGGAGAAATGAGTGGATA+AGG + chr6_4:52694867-52694886 None:intergenic 40.0%
GAAAAGAAGGGAGAAATGAG+TGG + chr6_4:52694873-52694892 None:intergenic 40.0%
TGAAGTTCAAAGGGTTATGG+TGG + chr6_4:52694915-52694934 None:intergenic 40.0%
! AAATTGGGGAAAGAAGGTGT+AGG + chr6_4:52695055-52695074 None:intergenic 40.0%
TCCCAATTCATGCATTGAAG+TGG - chr6_4:52695084-52695103 Msa0990650:CDS 40.0%
CACCACTTCAATGCATGAAT+TGG + chr6_4:52695089-52695108 None:intergenic 40.0%
CAATTCATGCATTGAAGTGG+TGG - chr6_4:52695087-52695106 Msa0990650:CDS 40.0%
TCAGAGCTCTTGTTCATCAA+TGG - chr6_4:52695356-52695375 Msa0990650:intron 40.0%
TGGTTCATTCCCACTTGATA+TGG - chr6_4:52695379-52695398 Msa0990650:intron 40.0%
GAGAACTCACCATATCAAGT+GGG + chr6_4:52695391-52695410 None:intergenic 40.0%
AGAGAACTCACCATATCAAG+TGG + chr6_4:52695392-52695411 None:intergenic 40.0%
!! TTGTTTGGAGGTAATGGGTT+TGG - chr6_4:52695448-52695467 Msa0990650:intron 40.0%
!! TGTTTGGAGGTAATGGGTTT+GGG - chr6_4:52695449-52695468 Msa0990650:intron 40.0%
GGGACATGTTTGAGAAAAGT+AGG - chr6_4:52695469-52695488 Msa0990650:intron 40.0%
!!! AAATGGTTTTGAGGCTGAGA+CGG - chr6_4:52695539-52695558 Msa0990650:intron 40.0%
GTGAAGCAATGACATCCAAA+TGG - chr6_4:52695561-52695580 Msa0990650:intron 40.0%
AATTCGTATGGACCTGTTGT+CGG - chr6_4:52695639-52695658 Msa0990650:intron 40.0%
! ATGACAGTTTTACCGACAAC+AGG + chr6_4:52695654-52695673 None:intergenic 40.0%
! TGTAGTGGGAATTGAACCAT+TGG - chr6_4:52695697-52695716 Msa0990650:intron 40.0%
TCGGCAAGCAAATTCGAATT+TGG - chr6_4:52695995-52696014 Msa0990650:intron 40.0%
CGGCAAGCAAATTCGAATTT+GGG - chr6_4:52695996-52696015 Msa0990650:intron 40.0%
! TGTTCTTGCGTTTTCGATCT+TGG - chr6_4:52696278-52696297 Msa0990650:intron 40.0%
TACTTCACACAGTATCGTGA+CGG - chr6_4:52696637-52696656 Msa0990650:intron 40.0%
TGGTATGGATCTTCTTTCTC+CGG + chr6_4:52696735-52696754 None:intergenic 40.0%
ATACGGTCCTTTCTTGTATG+AGG - chr6_4:52696845-52696864 Msa0990650:CDS 40.0%
AAGGGAGAAATGAGTGGATA+AGG + chr6_4:52694867-52694886 None:intergenic 40.0%
GAAAAGAAGGGAGAAATGAG+TGG + chr6_4:52694873-52694892 None:intergenic 40.0%
TGAAGTTCAAAGGGTTATGG+TGG + chr6_4:52694915-52694934 None:intergenic 40.0%
! AAATTGGGGAAAGAAGGTGT+AGG + chr6_4:52695055-52695074 None:intergenic 40.0%
TCCCAATTCATGCATTGAAG+TGG - chr6_4:52695084-52695103 Msa0990650:CDS 40.0%
CACCACTTCAATGCATGAAT+TGG + chr6_4:52695089-52695108 None:intergenic 40.0%
CAATTCATGCATTGAAGTGG+TGG - chr6_4:52695087-52695106 Msa0990650:CDS 40.0%
TCAGAGCTCTTGTTCATCAA+TGG - chr6_4:52695356-52695375 Msa0990650:intron 40.0%
TGGTTCATTCCCACTTGATA+TGG - chr6_4:52695379-52695398 Msa0990650:intron 40.0%
GAGAACTCACCATATCAAGT+GGG + chr6_4:52695391-52695410 None:intergenic 40.0%
AGAGAACTCACCATATCAAG+TGG + chr6_4:52695392-52695411 None:intergenic 40.0%
!! TTGTTTGGAGGTAATGGGTT+TGG - chr6_4:52695448-52695467 Msa0990650:intron 40.0%
!! TGTTTGGAGGTAATGGGTTT+GGG - chr6_4:52695449-52695468 Msa0990650:intron 40.0%
GGGACATGTTTGAGAAAAGT+AGG - chr6_4:52695469-52695488 Msa0990650:intron 40.0%
!!! AAATGGTTTTGAGGCTGAGA+CGG - chr6_4:52695539-52695558 Msa0990650:intron 40.0%
GTGAAGCAATGACATCCAAA+TGG - chr6_4:52695561-52695580 Msa0990650:intron 40.0%
AATTCGTATGGACCTGTTGT+CGG - chr6_4:52695639-52695658 Msa0990650:intron 40.0%
! ATGACAGTTTTACCGACAAC+AGG + chr6_4:52695654-52695673 None:intergenic 40.0%
! TGTAGTGGGAATTGAACCAT+TGG - chr6_4:52695697-52695716 Msa0990650:intron 40.0%
TCGGCAAGCAAATTCGAATT+TGG - chr6_4:52695995-52696014 Msa0990650:intron 40.0%
CGGCAAGCAAATTCGAATTT+GGG - chr6_4:52695996-52696015 Msa0990650:intron 40.0%
! TGTTCTTGCGTTTTCGATCT+TGG - chr6_4:52696278-52696297 Msa0990650:intron 40.0%
TACTTCACACAGTATCGTGA+CGG - chr6_4:52696637-52696656 Msa0990650:intron 40.0%
TGGTATGGATCTTCTTTCTC+CGG + chr6_4:52696735-52696754 None:intergenic 40.0%
ATACGGTCCTTTCTTGTATG+AGG - chr6_4:52696845-52696864 Msa0990650:CDS 40.0%
ATGGATGGCCGAGAAAAGAA+GGG + chr6_4:52694885-52694904 None:intergenic 45.0%
AATGGATGGCCGAGAAAAGA+AGG + chr6_4:52694886-52694905 None:intergenic 45.0%
!! TATGGTGGCTTTGGAATGGA+TGG + chr6_4:52694900-52694919 None:intergenic 45.0%
TCAAAGGGTTATGGTGGCTT+TGG + chr6_4:52694909-52694928 None:intergenic 45.0%
AAGGTGTAGGACTGTAGGTT+CGG + chr6_4:52695042-52695061 None:intergenic 45.0%
! GAAAGAAGGTGTAGGACTGT+AGG + chr6_4:52695047-52695066 None:intergenic 45.0%
! TCATGCATTGAAGTGGTGGA+AGG - chr6_4:52695091-52695110 Msa0990650:CDS 45.0%
! AGGTTTCGGTGCAAGAAGAA+TGG + chr6_4:52695199-52695218 None:intergenic 45.0%
!! AGTTGAAAGTGGGCTGAACA+GGG + chr6_4:52695225-52695244 None:intergenic 45.0%
! GCATGTGGATTTTCTTGCTC+AGG - chr6_4:52695264-52695283 Msa0990650:intron 45.0%
GAGCTCTTGTTCATCAATGG+TGG - chr6_4:52695359-52695378 Msa0990650:intron 45.0%
GCGTGTTCGTGCATTTGAAA+CGG - chr6_4:52696305-52696324 Msa0990650:intron 45.0%
! CGTGTTCGTGCATTTGAAAC+GGG - chr6_4:52696306-52696325 Msa0990650:intron 45.0%
ACGTTCTGTAATTGCTGCGT+AGG - chr6_4:52696341-52696360 Msa0990650:intron 45.0%
GTGTTCCAGATTGTTTAGGC+AGG - chr6_4:52696450-52696469 Msa0990650:intron 45.0%
AACTGCCTGCCTAAACAATC+TGG + chr6_4:52696458-52696477 None:intergenic 45.0%
GATTGTTTAGGCAGGCAGTT+AGG - chr6_4:52696458-52696477 Msa0990650:intron 45.0%
GTTGGCTGTGATTAAGACCA+AGG - chr6_4:52696674-52696693 Msa0990650:CDS 45.0%
TTGAATTGTGCTTCTCGCCT+TGG + chr6_4:52696694-52696713 None:intergenic 45.0%
! GGAGAAGTTGAGGAAGCATA+CGG - chr6_4:52696828-52696847 Msa0990650:CDS 45.0%
ATGGATGGCCGAGAAAAGAA+GGG + chr6_4:52694885-52694904 None:intergenic 45.0%
AATGGATGGCCGAGAAAAGA+AGG + chr6_4:52694886-52694905 None:intergenic 45.0%
!! TATGGTGGCTTTGGAATGGA+TGG + chr6_4:52694900-52694919 None:intergenic 45.0%
TCAAAGGGTTATGGTGGCTT+TGG + chr6_4:52694909-52694928 None:intergenic 45.0%
AAGGTGTAGGACTGTAGGTT+CGG + chr6_4:52695042-52695061 None:intergenic 45.0%
! GAAAGAAGGTGTAGGACTGT+AGG + chr6_4:52695047-52695066 None:intergenic 45.0%
! TCATGCATTGAAGTGGTGGA+AGG - chr6_4:52695091-52695110 Msa0990650:CDS 45.0%
! AGGTTTCGGTGCAAGAAGAA+TGG + chr6_4:52695199-52695218 None:intergenic 45.0%
!! AGTTGAAAGTGGGCTGAACA+GGG + chr6_4:52695225-52695244 None:intergenic 45.0%
! GCATGTGGATTTTCTTGCTC+AGG - chr6_4:52695264-52695283 Msa0990650:intron 45.0%
GAGCTCTTGTTCATCAATGG+TGG - chr6_4:52695359-52695378 Msa0990650:intron 45.0%
GCGTGTTCGTGCATTTGAAA+CGG - chr6_4:52696305-52696324 Msa0990650:intron 45.0%
! CGTGTTCGTGCATTTGAAAC+GGG - chr6_4:52696306-52696325 Msa0990650:intron 45.0%
ACGTTCTGTAATTGCTGCGT+AGG - chr6_4:52696341-52696360 Msa0990650:intron 45.0%
GTGTTCCAGATTGTTTAGGC+AGG - chr6_4:52696450-52696469 Msa0990650:intron 45.0%
AACTGCCTGCCTAAACAATC+TGG + chr6_4:52696458-52696477 None:intergenic 45.0%
GATTGTTTAGGCAGGCAGTT+AGG - chr6_4:52696458-52696477 Msa0990650:intron 45.0%
GTTGGCTGTGATTAAGACCA+AGG - chr6_4:52696674-52696693 Msa0990650:CDS 45.0%
TTGAATTGTGCTTCTCGCCT+TGG + chr6_4:52696694-52696713 None:intergenic 45.0%
! GGAGAAGTTGAGGAAGCATA+CGG - chr6_4:52696828-52696847 Msa0990650:CDS 45.0%
!! GGGTTATGGTGGCTTTGGAA+TGG + chr6_4:52694904-52694923 None:intergenic 50.0%
! GTAGGACTGTAGGTTCGGTT+GGG + chr6_4:52695037-52695056 None:intergenic 50.0%
! TGTAGGACTGTAGGTTCGGT+TGG + chr6_4:52695038-52695057 None:intergenic 50.0%
GCTGAACAGGGGTTAGGTTT+CGG + chr6_4:52695213-52695232 None:intergenic 50.0%
!! GTTGAAAGTGGGCTGAACAG+GGG + chr6_4:52695224-52695243 None:intergenic 50.0%
!! GAGTTGAAAGTGGGCTGAAC+AGG + chr6_4:52695226-52695245 None:intergenic 50.0%
TTGGCAGGGTTGACGATTCA+GGG - chr6_4:52696492-52696511 Msa0990650:intron 50.0%
!! GGGTTATGGTGGCTTTGGAA+TGG + chr6_4:52694904-52694923 None:intergenic 50.0%
! GTAGGACTGTAGGTTCGGTT+GGG + chr6_4:52695037-52695056 None:intergenic 50.0%
! TGTAGGACTGTAGGTTCGGT+TGG + chr6_4:52695038-52695057 None:intergenic 50.0%
GCTGAACAGGGGTTAGGTTT+CGG + chr6_4:52695213-52695232 None:intergenic 50.0%
!! GTTGAAAGTGGGCTGAACAG+GGG + chr6_4:52695224-52695243 None:intergenic 50.0%
!! GAGTTGAAAGTGGGCTGAAC+AGG + chr6_4:52695226-52695245 None:intergenic 50.0%
TTGGCAGGGTTGACGATTCA+GGG - chr6_4:52696492-52696511 Msa0990650:intron 50.0%
! CTGTAGGTTCGGTTGGGACT+AGG + chr6_4:52695031-52695050 None:intergenic 55.0%
!! AAGTGGGCTGAACAGGGGTT+AGG + chr6_4:52695219-52695238 None:intergenic 55.0%
CAGTTAGGACCGAGGCTTCT+TGG - chr6_4:52696473-52696492 Msa0990650:intron 55.0%
TCAACCCTGCCAAGAAGCCT+CGG + chr6_4:52696485-52696504 None:intergenic 55.0%
CTTGGCAGGGTTGACGATTC+AGG - chr6_4:52696491-52696510 Msa0990650:intron 55.0%
TGGCAGGGTTGACGATTCAG+GGG - chr6_4:52696493-52696512 Msa0990650:intron 55.0%
! CTGTAGGTTCGGTTGGGACT+AGG + chr6_4:52695031-52695050 None:intergenic 55.0%
!! AAGTGGGCTGAACAGGGGTT+AGG + chr6_4:52695219-52695238 None:intergenic 55.0%
CAGTTAGGACCGAGGCTTCT+TGG - chr6_4:52696473-52696492 Msa0990650:intron 55.0%
TCAACCCTGCCAAGAAGCCT+CGG + chr6_4:52696485-52696504 None:intergenic 55.0%
CTTGGCAGGGTTGACGATTC+AGG - chr6_4:52696491-52696510 Msa0990650:intron 55.0%
TGGCAGGGTTGACGATTCAG+GGG - chr6_4:52696493-52696512 Msa0990650:intron 55.0%
! GGTTCGGTTGGGACTAGGAG+AGG + chr6_4:52695026-52695045 None:intergenic 60.0%
TAGGCAGGCAGTTAGGACCG+AGG - chr6_4:52696465-52696484 Msa0990650:intron 60.0%
TAGGACCGAGGCTTCTTGGC+AGG - chr6_4:52696477-52696496 Msa0990650:intron 60.0%
AGGACCGAGGCTTCTTGGCA+GGG - chr6_4:52696478-52696497 Msa0990650:intron 60.0%
! GGTTCGGTTGGGACTAGGAG+AGG + chr6_4:52695026-52695045 None:intergenic 60.0%
TAGGCAGGCAGTTAGGACCG+AGG - chr6_4:52696465-52696484 Msa0990650:intron 60.0%
TAGGACCGAGGCTTCTTGGC+AGG - chr6_4:52696477-52696496 Msa0990650:intron 60.0%
AGGACCGAGGCTTCTTGGCA+GGG - chr6_4:52696478-52696497 Msa0990650:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 52694861 52696953 52694861 ID=Msa0990650;Name=Msa0990650
chr6_4 mRNA 52694861 52696953 52694861 ID=Msa0990650-mRNA-1;Parent=Msa0990650;Name=Msa0990650-mRNA-1;_AED=0.29;_eAED=0.35;_QI=89|0|0.33|1|1|1|3|0|172
chr6_4 exon 52694861 52695124 52694861 ID=Msa0990650-mRNA-1:exon:11030;Parent=Msa0990650-mRNA-1
chr6_4 exon 52695300 52695342 52695300 ID=Msa0990650-mRNA-1:exon:11029;Parent=Msa0990650-mRNA-1
chr6_4 exon 52696653 52696953 52696653 ID=Msa0990650-mRNA-1:exon:11028;Parent=Msa0990650-mRNA-1
chr6_4 five_prime_UTR 52696865 52696953 52696865 ID=Msa0990650-mRNA-1:five_prime_utr;Parent=Msa0990650-mRNA-1
chr6_4 CDS 52696653 52696864 52696653 ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1
chr6_4 CDS 52695300 52695342 52695300 ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1
chr6_4 CDS 52694861 52695124 52694861 ID=Msa0990650-mRNA-1:cds;Parent=Msa0990650-mRNA-1
Gene Sequence

>Msa0990650

ATGATACATGTAATCTTACTACCTCATTTCTTATGTGAATTAATGTGTGGATTAAGCTTCAATATGTTATCTTCCTCTCCTAGTCCCAACCGAACCTACAGTCCTACACCTTCTTTCCCCAATTTTCTTTCTTATCCCAATTCATGCATTGAAGTGGTGGAAGGTGTACCTCTTGTTTCAATTTCTCTACTTTGGGTTAAGATGAAGCTTAGGCAGTTAGGACCGAGGCTTCTTGGCAGGGTTGACGATTCAGGGACCAAGGCGAGAAGCACAATTCAAACTTTAGAAGATAGTAAGCCGGAGAAAGAAGATCCATACCAAGATGAATCAAACACACAATCACACATGACAATTGCAAATGACAATCTTGAAGGAAGTTTTGTTGATTTAGTTGGAGAAGTTGAGGAAGCATACGGTCCTTTCTTGTATGAGGTTACCTTTGAATGGGATAAAGATATTGAAGTAGAAGTAGAAGACAGTGCTGAAGAAGATGATGATGATGAAACATATTCTGACTAG

Protein sequence

>Msa0990650

MIHVILLPHFLCELMCGLSFNMLSSSPSPNRTYSPTPSFPNFLSYPNSCIEVVEGVPLVSISLLWVKMKLRQLGPRLLGRVDDSGTKARSTIQTLEDSKPEKEDPYQDESNTQSHMTIANDNLEGSFVDLVGEVEEAYGPFLYEVTFEWDKDIEVEVEDSAEEDDDDETYSD*