Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622630 | XP_024631910.1 | 94.382 | 89 | 5 | 0 | 76 | 164 | 1039 | 1127 | 2.70e-48 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0622630 | A0A2K3MEG5 | 84.615 | 78 | 12 | 0 | 76 | 153 | 94 | 171 | 6.53e-39 | 140 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042770 | Msa0622630 | 0.911129 | 8.620958e-83 | -8.615850e-47 |
| Msa0622630 | Msa0622660 | 0.840097 | 1.067266e-57 | -8.615850e-47 |
| Msa0622630 | Msa0623820 | 0.904334 | 1.368565e-79 | -8.615850e-47 |
| Msa0622630 | Msa0672120 | 0.801710 | 7.920565e-49 | -8.615850e-47 |
| Msa0622630 | Msa0727130 | 0.904100 | 1.746194e-79 | -8.615850e-47 |
| Msa0622630 | Msa0773610 | 0.808474 | 3.043123e-50 | -8.615850e-47 |
| Msa0622630 | Msa0800390 | 0.810028 | 1.413130e-50 | -8.615850e-47 |
| Msa0622630 | Msa0919970 | 0.864587 | 1.092110e-64 | -8.615850e-47 |
| Msa0622630 | Msa0990650 | 0.800745 | 1.248011e-48 | -8.615850e-47 |
| Msa0622630 | Msa1070950 | 0.856441 | 3.211186e-62 | -8.615850e-47 |
| Msa0622630 | Msa1187290 | 0.930760 | 1.022961e-93 | -8.615850e-47 |
| Msa0622630 | Msa1204980 | -0.812164 | 4.866413e-51 | -8.615850e-47 |
| Msa0622630 | Msa1205010 | -0.809399 | 1.929129e-50 | -8.615850e-47 |
| Msa0622630 | Msa1256540 | -0.812018 | 5.235419e-51 | -8.615850e-47 |
| Msa0622630 | Msa1296960 | -0.811244 | 7.713934e-51 | -8.615850e-47 |
| Msa0622630 | Msa1351620 | 0.801599 | 8.345998e-49 | -8.615850e-47 |
| Msa0185640 | Msa0622630 | -0.814516 | 1.480793e-51 | -8.615850e-47 |
| Msa0458310 | Msa0622630 | 0.805909 | 1.063148e-49 | -8.615850e-47 |
| Msa0339790 | Msa0622630 | 0.834230 | 3.379370e-56 | -8.615850e-47 |
| Msa0342340 | Msa0622630 | -0.807572 | 4.734033e-50 | -8.615850e-47 |
| Msa0540070 | Msa0622630 | 0.825353 | 4.908549e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 52 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGCAGGGTTGACGATTC+AGG | 0.139753 | 4_2:+75183067 | Msa0622630:CDS |
| GGTGCTTAAAATTTATTATC+TGG | 0.297194 | 4_2:+75183755 | Msa0622630:three_prime_UTR |
| AAAACACGGGACTTTGAAAA+AGG | 0.315346 | 4_2:+75181062 | Msa0622630:CDS |
| GGAAGCATACGGTCCTTTCT+TGG | 0.323111 | 4_2:+75183412 | Msa0622630:CDS |
| GGAAGTCTTGTTGATTTAGT+TGG | 0.335009 | 4_2:+75183380 | Msa0622630:CDS |
| CTCTCGGCGAGAAGCGGGCC+GGG | 0.348236 | 4_2:+75181130 | Msa0622630:CDS |
| CAGTTAGGACCGAGGCTTCT+TGG | 0.357951 | 4_2:+75183049 | Msa0622630:CDS |
| GGTTTCGTGCGGTTGTTTAG+AGG | 0.372941 | 4_2:+75183785 | Msa0622630:three_prime_UTR |
| AAAATACCTTGAAATCCTTT+GGG | 0.373281 | 4_2:-75183722 | None:intergenic |
| CTCGGCGAGAAGCGGGCCGG+GGG | 0.384221 | 4_2:+75181132 | Msa0622630:CDS |
| TCTCGGCGAGAAGCGGGCCG+GGG | 0.384589 | 4_2:+75181131 | Msa0622630:CDS |
| TTGAATTGTGCTTCTCGCCT+TGG | 0.392592 | 4_2:-75183264 | None:intergenic |
| TGGATGAGGTTACCTTTGAA+TGG | 0.410546 | 4_2:+75183432 | Msa0622630:CDS |
| TAGGACCGAGGCTTCTTGGC+AGG | 0.415660 | 4_2:+75183053 | Msa0622630:CDS |
| GATTGTTTAGGCAGGCAGTT+AGG | 0.435522 | 4_2:+75183034 | Msa0622630:intron |
| TTGGCAGGGTTGACGATTCA+GGG | 0.436084 | 4_2:+75183068 | Msa0622630:CDS |
| GACGTGTAGCTAAGTTGCTT+CGG | 0.439275 | 4_2:-75180977 | None:intergenic |
| TGGTATGGAACTTCTTTCTC+CGG | 0.445848 | 4_2:-75183305 | None:intergenic |
| GGATGAGGTTACCTTTGAAT+GGG | 0.455125 | 4_2:+75183433 | Msa0622630:CDS |
| ATTGCAAATGACAATCTTGA+AGG | 0.456999 | 4_2:+75183359 | Msa0622630:CDS |
| AGAGGTAGAGGCAGCGGAAG+AGG | 0.457632 | 4_2:+75183651 | Msa0622630:CDS |
| GTTTCGTGCGGTTGTTTAGA+GGG | 0.459047 | 4_2:+75183786 | Msa0622630:three_prime_UTR |
| AACAAACCCAAAGGATTTCA+AGG | 0.473412 | 4_2:+75183716 | Msa0622630:three_prime_UTR |
| ATTGTGTGATTGATTCATCT+TGG | 0.474013 | 4_2:-75183325 | None:intergenic |
| AAAGGCTCTCGGCGAGAAGC+GGG | 0.475541 | 4_2:+75181125 | Msa0622630:CDS |
| GCTCTCGGCGAGAAGCGGGC+CGG | 0.481122 | 4_2:+75181129 | Msa0622630:CDS |
| ATGATCGACAACCAAGGAAA+AGG | 0.485660 | 4_2:+75180951 | Msa0622630:CDS |
| ATACGGTCCTTTCTTGGATG+AGG | 0.503815 | 4_2:+75183418 | Msa0622630:CDS |
| GTGATTGATTCATCTTGGTA+TGG | 0.505565 | 4_2:-75183320 | None:intergenic |
| AATTTATTATCTGGTAGCAT+AGG | 0.515942 | 4_2:+75183764 | Msa0622630:three_prime_UTR |
| TGATTTAGTTGGAGAAGTTG+AGG | 0.526516 | 4_2:+75183391 | Msa0622630:CDS |
| AATATCGTTATCCCATTCAA+AGG | 0.527780 | 4_2:-75183444 | None:intergenic |
| CGAATGTTAGGTAGAGGTAG+AGG | 0.532296 | 4_2:+75183639 | Msa0622630:intron |
| TTAGGTAGAGGTAGAGGCAG+CGG | 0.532621 | 4_2:+75183645 | Msa0622630:intron |
| AGGACCGAGGCTTCTTGGCA+GGG | 0.533687 | 4_2:+75183054 | Msa0622630:CDS |
| AACTTTAGAAGATAGTAAGC+CGG | 0.555137 | 4_2:+75183286 | Msa0622630:CDS |
| TTGCGGGAGATACCCGCCCC+CGG | 0.557559 | 4_2:-75181148 | None:intergenic |
| AAGGTAACCTCATCCAAGAA+AGG | 0.563434 | 4_2:-75183425 | None:intergenic |
| AAAAGGCTCTCGGCGAGAAG+CGG | 0.563815 | 4_2:+75181124 | Msa0622630:CDS |
| TCAACCCTGCCAAGAAGCCT+CGG | 0.575981 | 4_2:-75183058 | None:intergenic |
| CTCTTCGACAAATTAAAACA+CGG | 0.580256 | 4_2:+75181048 | Msa0622630:CDS |
| GCAACTTAGCTACACGTCGA+AGG | 0.607985 | 4_2:+75180982 | Msa0622630:CDS |
| GTTGGCTGTGATTAAGACCA+AGG | 0.613774 | 4_2:+75183247 | Msa0622630:CDS |
| TACTTCACACAGTATCCTGA+AGG | 0.615568 | 4_2:+75183212 | Msa0622630:intron |
| GGAGAAGTTGAGGAAGCATA+CGG | 0.617796 | 4_2:+75183401 | Msa0622630:CDS |
| TGGCAGGGTTGACGATTCAG+GGG | 0.627660 | 4_2:+75183069 | Msa0622630:CDS |
| CTGGTAGCATAGGTTTCGTG+CGG | 0.636336 | 4_2:+75183774 | Msa0622630:three_prime_UTR |
| ATCTTCTCAAACAAACCCAA+AGG | 0.644202 | 4_2:+75183707 | Msa0622630:three_prime_UTR |
| TCTTCGACAAATTAAAACAC+GGG | 0.646763 | 4_2:+75181049 | Msa0622630:CDS |
| TTCTTCATGATCGACAACCA+AGG | 0.655034 | 4_2:+75180945 | None:intergenic |
| TAGGCAGGCAGTTAGGACCG+AGG | 0.670686 | 4_2:+75183041 | Msa0622630:intron |
| ACGTCAGACAACATGATCCG+AGG | 0.690921 | 4_2:+75181099 | Msa0622630:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCTTTAAAAAAATGT+TGG | + | chr4_2:75181385-75181404 | Msa0622630:intron | 10.0% |
| !! | ATTGAGAAAACAAAGATATT+CGG | + | chr4_2:75181250-75181269 | Msa0622630:intron | 20.0% |
| !! | ATTAAAAGGTTACGAATTAA+CGG | + | chr4_2:75181309-75181328 | Msa0622630:intron | 20.0% |
| !! | ATTAATTCACATAAGAAATG+AGG | - | chr4_2:75181562-75181581 | None:intergenic | 20.0% |
| !! | TCAACTCCTTAATTAATTAA+TGG | + | chr4_2:75181827-75181846 | Msa0622630:intron | 20.0% |
| !! | ATGCAACCATTAATTAATTA+AGG | - | chr4_2:75181836-75181855 | None:intergenic | 20.0% |
| !! | AGATTAATTCATGAAACAAA+TGG | + | chr4_2:75182103-75182122 | Msa0622630:intron | 20.0% |
| !!! | AAATTTTGTCTATTTTCCAA+TGG | - | chr4_2:75182297-75182316 | None:intergenic | 20.0% |
| !! | TCAAAATAACTTAAAAGTCT+TGG | - | chr4_2:75182604-75182623 | None:intergenic | 20.0% |
| !!! | CAAGGTATTTTTATGATATA+AGG | + | chr4_2:75183734-75183753 | Msa0622630:three_prime_UTR | 20.0% |
| ! | AAAGATTGATGAAGTTCAAA+GGG | - | chr4_2:75181512-75181531 | None:intergenic | 25.0% |
| !! | CAAGATTACATGTATCATTT+TGG | - | chr4_2:75181536-75181555 | None:intergenic | 25.0% |
| ! | TTCTTATGTGAATTAATGTG+TGG | + | chr4_2:75181565-75181584 | Msa0622630:intron | 25.0% |
| ! | TTGGGATAAGAAAGAAAATT+GGG | - | chr4_2:75181658-75181677 | None:intergenic | 25.0% |
| ! | ATTGGGATAAGAAAGAAAAT+TGG | - | chr4_2:75181659-75181678 | None:intergenic | 25.0% |
| ! | TTGTTTCAATTTCTCTACTT+TGG | + | chr4_2:75181710-75181729 | Msa0622630:intron | 25.0% |
| ! | TGTTTCAATTTCTCTACTTT+GGG | + | chr4_2:75181711-75181730 | Msa0622630:intron | 25.0% |
| ! | TTAATTAAGGAGTTGAAAGT+GGG | - | chr4_2:75181823-75181842 | None:intergenic | 25.0% |
| ! | ATTAATTAAGGAGTTGAAAG+TGG | - | chr4_2:75181824-75181843 | None:intergenic | 25.0% |
| ! | AATTAATTAATGGTTGCATG+TGG | + | chr4_2:75181837-75181856 | Msa0622630:intron | 25.0% |
| !!! | TTAGAGTTGAATTTGTTGTT+TGG | + | chr4_2:75182014-75182033 | Msa0622630:intron | 25.0% |
| ! | ATTAATCTTGCACATAACAT+GGG | - | chr4_2:75182091-75182110 | None:intergenic | 25.0% |
| ! | AATTAATCTTGCACATAACA+TGG | - | chr4_2:75182092-75182111 | None:intergenic | 25.0% |
| ! | TTTAACGATGATAATCCATT+TGG | - | chr4_2:75182160-75182179 | None:intergenic | 25.0% |
| ! | ATCATCGTTAAAAGTGATTA+TGG | + | chr4_2:75182168-75182187 | Msa0622630:intron | 25.0% |
| ! | AATGTCAGTTAAAATTCGTA+TGG | + | chr4_2:75182208-75182227 | Msa0622630:intron | 25.0% |
| ! | GACAAAATTTAACACGAAAT+TGG | + | chr4_2:75182307-75182326 | Msa0622630:intron | 25.0% |
| !! | AATTTTTGTCTTCTTTCTCA+TGG | - | chr4_2:75182472-75182491 | None:intergenic | 25.0% |
| ! | GACAAAAATTAACCTGAAAT+AGG | + | chr4_2:75182482-75182501 | Msa0622630:intron | 25.0% |
| ! | CTACTTGTAAATGTAACTTT+CGG | + | chr4_2:75182551-75182570 | Msa0622630:intron | 25.0% |
| ! | TTTATTACAAATTTCTGCGT+AGG | + | chr4_2:75182794-75182813 | Msa0622630:intron | 25.0% |
| ! | TTGAACATCAAAGGAAAAAA+AGG | - | chr4_2:75182966-75182985 | None:intergenic | 25.0% |
| ! | ACCATTAATGTAAAAATCCA+GGG | - | chr4_2:75183147-75183166 | None:intergenic | 25.0% |
| ! | AAAATACCTTGAAATCCTTT+GGG | - | chr4_2:75183725-75183744 | None:intergenic | 25.0% |
| ! | AAAAATACCTTGAAATCCTT+TGG | - | chr4_2:75183726-75183745 | None:intergenic | 25.0% |
| ! | GGTGCTTAAAATTTATTATC+TGG | + | chr4_2:75183755-75183774 | Msa0622630:three_prime_UTR | 25.0% |
| ! | AATTTATTATCTGGTAGCAT+AGG | + | chr4_2:75183764-75183783 | Msa0622630:three_prime_UTR | 25.0% |
| !!! | GTGTTTTTGACTTTGTTTAA+TGG | + | chr4_2:75183906-75183925 | Msa0622630:three_prime_UTR | 25.0% |
| CTCTTCGACAAATTAAAACA+CGG | + | chr4_2:75181048-75181067 | Msa0622630:CDS | 30.0% | |
| TCTTCGACAAATTAAAACAC+GGG | + | chr4_2:75181049-75181068 | Msa0622630:CDS | 30.0% | |
| ATATTATTCGAACGAACTTG+AGG | + | chr4_2:75181285-75181304 | Msa0622630:intron | 30.0% | |
| AACGAACTTGAGGAATTAAA+AGG | + | chr4_2:75181295-75181314 | Msa0622630:intron | 30.0% | |
| CAAAGATTGATGAAGTTCAA+AGG | - | chr4_2:75181513-75181532 | None:intergenic | 30.0% | |
| TGGGATAAGAAAGAAAATTG+GGG | - | chr4_2:75181657-75181676 | None:intergenic | 30.0% | |
| AGTAGAGAAATTGAAACAAG+AGG | - | chr4_2:75181709-75181728 | None:intergenic | 30.0% | |
| AGAATAGAAGGAGAAATTGA+AGG | + | chr4_2:75181912-75181931 | Msa0622630:intron | 30.0% | |
| GAATAGAAGGAGAAATTGAA+GGG | + | chr4_2:75181913-75181932 | Msa0622630:intron | 30.0% | |
| !! | AATTTGTTGTTTGGAGGTAA+TGG | + | chr4_2:75182023-75182042 | Msa0622630:intron | 30.0% |
| !! | ATTTGTTGTTTGGAGGTAAT+GGG | + | chr4_2:75182024-75182043 | Msa0622630:intron | 30.0% |
| !! | TCATGAAACAAATGGTTTTG+AGG | + | chr4_2:75182111-75182130 | Msa0622630:intron | 30.0% |
| TCGTTAAAAGTGATTATGGA+TGG | + | chr4_2:75182172-75182191 | Msa0622630:intron | 30.0% | |
| ! | TACGTGATTCATTTTGTAGT+GGG | + | chr4_2:75182264-75182283 | Msa0622630:intron | 30.0% |
| ! | ATTTAACACGAAATTGGCTT+TGG | + | chr4_2:75182313-75182332 | Msa0622630:intron | 30.0% |
| TCTATGTTCATACATCACTT+TGG | + | chr4_2:75182433-75182452 | Msa0622630:intron | 30.0% | |
| TGAGTAGTCTAAGAATACAA+AGG | + | chr4_2:75182631-75182650 | Msa0622630:intron | 30.0% | |
| AATTTCTGCGTAGGAATATT+CGG | + | chr4_2:75182803-75182822 | Msa0622630:intron | 30.0% | |
| ! | GAATATTCAGTAAAGTACTC+AGG | + | chr4_2:75182938-75182957 | Msa0622630:intron | 30.0% |
| ! | CAATCTGGAACACAAATAAA+AGG | - | chr4_2:75183019-75183038 | None:intergenic | 30.0% |
| ATTTGTGTTCCAGATTGTTT+AGG | + | chr4_2:75183022-75183041 | Msa0622630:intron | 30.0% | |
| !!! | GTTTTATTTTATACCAACCC+TGG | + | chr4_2:75183127-75183146 | Msa0622630:intron | 30.0% |
| TTAATGTAAAAATCCAGGGT+TGG | - | chr4_2:75183143-75183162 | None:intergenic | 30.0% | |
| ! | ACCCTGGATTTTTACATTAA+TGG | + | chr4_2:75183143-75183162 | Msa0622630:intron | 30.0% |
| CACCATTAATGTAAAAATCC+AGG | - | chr4_2:75183148-75183167 | None:intergenic | 30.0% | |
| ! | TGTGTGAAGTATACTTGTTT+TGG | - | chr4_2:75183203-75183222 | None:intergenic | 30.0% |
| ATCCTGAAGGAAAAAAAGAT+TGG | + | chr4_2:75183225-75183244 | Msa0622630:CDS | 30.0% | |
| !!! | AACCAATCTTTTTTTCCTTC+AGG | - | chr4_2:75183230-75183249 | None:intergenic | 30.0% |
| TGAAGGAAAAAAAGATTGGT+TGG | + | chr4_2:75183229-75183248 | Msa0622630:CDS | 30.0% | |
| ! | AACTTTAGAAGATAGTAAGC+CGG | + | chr4_2:75183286-75183305 | Msa0622630:CDS | 30.0% |
| ! | ATTGTGTGATTGATTCATCT+TGG | - | chr4_2:75183328-75183347 | None:intergenic | 30.0% |
| ATTGCAAATGACAATCTTGA+AGG | + | chr4_2:75183359-75183378 | Msa0622630:CDS | 30.0% | |
| AATATCGTTATCCCATTCAA+AGG | - | chr4_2:75183447-75183466 | None:intergenic | 30.0% | |
| ATCATCATCTTCTTCTTCTT+CGG | - | chr4_2:75183492-75183511 | None:intergenic | 30.0% | |
| TGATGAAACATATTCTGACT+AGG | + | chr4_2:75183520-75183539 | Msa0622630:intron | 30.0% | |
| TAAGTCATGCAAGAATAAGA+GGG | - | chr4_2:75183565-75183584 | None:intergenic | 30.0% | |
| ATAAGTCATGCAAGAATAAG+AGG | - | chr4_2:75183566-75183585 | None:intergenic | 30.0% | |
| TTGTATTGTTCACGAATGTT+AGG | + | chr4_2:75183627-75183646 | Msa0622630:intron | 30.0% | |
| !! | AGCACTTTTTGTTTCAGTTT+TGG | + | chr4_2:75183815-75183834 | Msa0622630:three_prime_UTR | 30.0% |
| !! | CTTTTTGTTTCAGTTTTGGT+TGG | + | chr4_2:75183819-75183838 | Msa0622630:three_prime_UTR | 30.0% |
| ! | AAAACACGGGACTTTGAAAA+AGG | + | chr4_2:75181062-75181081 | Msa0622630:CDS | 35.0% |
| ! | ACTTTGAAAAAGGTCTCATC+AGG | + | chr4_2:75181072-75181091 | Msa0622630:CDS | 35.0% |
| ! | TCTCGAATCTTTTGCTTATC+GGG | - | chr4_2:75181198-75181217 | None:intergenic | 35.0% |
| ! | CTCTCGAATCTTTTGCTTAT+CGG | - | chr4_2:75181199-75181218 | None:intergenic | 35.0% |
| AGTCCAGGCTTAATATACAA+GGG | + | chr4_2:75181217-75181236 | Msa0622630:intron | 35.0% | |
| TAACCCTTGTATATTAAGCC+TGG | - | chr4_2:75181223-75181242 | None:intergenic | 35.0% | |
| AAGGGAGAAATAAGTGGATA+AGG | - | chr4_2:75181413-75181432 | None:intergenic | 35.0% | |
| GAAAAGAAGGGAGAAATAAG+TGG | - | chr4_2:75181419-75181438 | None:intergenic | 35.0% | |
| CTGATCTTAGGAGAAAAGAA+GGG | - | chr4_2:75181431-75181450 | None:intergenic | 35.0% | |
| TCTGATCTTAGGAGAAAAGA+AGG | - | chr4_2:75181432-75181451 | None:intergenic | 35.0% | |
| AGAGATAGAAAGGAGTAAGA+GGG | - | chr4_2:75181462-75181481 | None:intergenic | 35.0% | |
| TCTTACTCCTTTCTATCTCT+CGG | + | chr4_2:75181462-75181481 | Msa0622630:intron | 35.0% | |
| TGATGAAGTTCAAAGGGTTA+TGG | - | chr4_2:75181506-75181525 | None:intergenic | 35.0% | |
| GAAAGAAAATTGGGGAAAGA+AGG | - | chr4_2:75181649-75181668 | None:intergenic | 35.0% | |
| ACCACTTCAATGCATGAATT+GGG | - | chr4_2:75181676-75181695 | None:intergenic | 35.0% | |
| ! | TTTGGGTTAAGATGAAGCTT+AGG | + | chr4_2:75181728-75181747 | Msa0622630:intron | 35.0% |
| GCAAGAACAAGAAGAATAGA+AGG | + | chr4_2:75181900-75181919 | Msa0622630:intron | 35.0% | |
| ! | TCAGAGCTTTTGTTCATCAA+TGG | + | chr4_2:75181937-75181956 | Msa0622630:intron | 35.0% |
| !! | GAGTTGAATTTGTTGTTTGG+AGG | + | chr4_2:75182017-75182036 | Msa0622630:intron | 35.0% |
| CTACAAAATGAATCACGTAC+AGG | - | chr4_2:75182263-75182282 | None:intergenic | 35.0% | |
| ! | GTACGTGATTCATTTTGTAG+TGG | + | chr4_2:75182263-75182282 | Msa0622630:intron | 35.0% |
| ! | AAGCACAAGTTGAACATCAA+AGG | - | chr4_2:75182975-75182994 | None:intergenic | 35.0% |
| !! | ATTAATGGTGCTGCAAAGTT+TGG | + | chr4_2:75183158-75183177 | Msa0622630:intron | 35.0% |
| ! | GTGATTGATTCATCTTGGTA+TGG | - | chr4_2:75183323-75183342 | None:intergenic | 35.0% |
| !! | GGAAGTCTTGTTGATTTAGT+TGG | + | chr4_2:75183380-75183399 | Msa0622630:CDS | 35.0% |
| TGATTTAGTTGGAGAAGTTG+AGG | + | chr4_2:75183391-75183410 | Msa0622630:CDS | 35.0% | |
| ATCTTCTCAAACAAACCCAA+AGG | + | chr4_2:75183707-75183726 | Msa0622630:three_prime_UTR | 35.0% | |
| AACAAACCCAAAGGATTTCA+AGG | + | chr4_2:75183716-75183735 | Msa0622630:three_prime_UTR | 35.0% | |
| ATGATCGACAACCAAGGAAA+AGG | + | chr4_2:75180951-75180970 | Msa0622630:CDS | 40.0% | |
| ! | ATCTTACGCAATCTGAGATC+AGG | - | chr4_2:75181021-75181040 | None:intergenic | 40.0% |
| TGAAAAAGGTCTCATCAGGA+AGG | + | chr4_2:75181076-75181095 | Msa0622630:CDS | 40.0% | |
| CAACATGATCCGAGGAAAAA+AGG | + | chr4_2:75181107-75181126 | Msa0622630:CDS | 40.0% | |
| GAGTCCAGGCTTAATATACA+AGG | + | chr4_2:75181216-75181235 | Msa0622630:intron | 40.0% | |
| ! | AATCACGTCTTTTCCCTTGA+AGG | + | chr4_2:75181337-75181356 | Msa0622630:intron | 40.0% |
| ! | ATCACGTCTTTTCCCTTGAA+GGG | + | chr4_2:75181338-75181357 | Msa0622630:intron | 40.0% |
| !!! | TTTTCCCTTGAAGGGCATTT+TGG | + | chr4_2:75181346-75181365 | Msa0622630:intron | 40.0% |
| ATGACCAAAATGCCCTTCAA+GGG | - | chr4_2:75181353-75181372 | None:intergenic | 40.0% | |
| AATGACCAAAATGCCCTTCA+AGG | - | chr4_2:75181354-75181373 | None:intergenic | 40.0% | |
| !!! | TGAAGGGCATTTTGGTCATT+TGG | + | chr4_2:75181354-75181373 | Msa0622630:intron | 40.0% |
| !!! | GAAGGGCATTTTGGTCATTT+GGG | + | chr4_2:75181355-75181374 | Msa0622630:intron | 40.0% |
| !!! | AAGGGCATTTTGGTCATTTG+GGG | + | chr4_2:75181356-75181375 | Msa0622630:intron | 40.0% |
| ! | AGGGAGTATGTTCTGATCTT+AGG | - | chr4_2:75181443-75181462 | None:intergenic | 40.0% |
| GAGAGATAGAAAGGAGTAAG+AGG | - | chr4_2:75181463-75181482 | None:intergenic | 40.0% | |
| TGAAGTTCAAAGGGTTATGG+TGG | - | chr4_2:75181503-75181522 | None:intergenic | 40.0% | |
| ! | AAATTGGGGAAAGAAGGTGT+AGG | - | chr4_2:75181643-75181662 | None:intergenic | 40.0% |
| TCCCAATTCATGCATTGAAG+TGG | + | chr4_2:75181672-75181691 | Msa0622630:intron | 40.0% | |
| CACCACTTCAATGCATGAAT+TGG | - | chr4_2:75181677-75181696 | None:intergenic | 40.0% | |
| CAATTCATGCATTGAAGTGG+TGG | + | chr4_2:75181675-75181694 | Msa0622630:intron | 40.0% | |
| ! | GAGCTTTTGTTCATCAATGG+TGG | + | chr4_2:75181940-75181959 | Msa0622630:intron | 40.0% |
| AGAACTCACCATATCAAGTG+GGG | - | chr4_2:75181971-75181990 | None:intergenic | 40.0% | |
| GAGAACTCACCATATCAAGT+GGG | - | chr4_2:75181972-75181991 | None:intergenic | 40.0% | |
| AGAGAACTCACCATATCAAG+TGG | - | chr4_2:75181973-75181992 | None:intergenic | 40.0% | |
| !! | TTGTTTGGAGGTAATGGGTT+TGG | + | chr4_2:75182029-75182048 | Msa0622630:intron | 40.0% |
| !! | TGTTTGGAGGTAATGGGTTT+GGG | + | chr4_2:75182030-75182049 | Msa0622630:intron | 40.0% |
| GGGACATGTTTGAGAAAAGT+AGG | + | chr4_2:75182050-75182069 | Msa0622630:intron | 40.0% | |
| !!! | AAATGGTTTTGAGGCTGAGA+CGG | + | chr4_2:75182120-75182139 | Msa0622630:intron | 40.0% |
| GTGAAGCAATGACATCCAAA+TGG | + | chr4_2:75182142-75182161 | Msa0622630:intron | 40.0% | |
| AATTCGTATGGACCTGTTGT+CGG | + | chr4_2:75182220-75182239 | Msa0622630:intron | 40.0% | |
| ! | ATGACAGTTTTACCGACAAC+AGG | - | chr4_2:75182235-75182254 | None:intergenic | 40.0% |
| ! | TGTAGTGGGAATTGAACCAT+TGG | + | chr4_2:75182278-75182297 | Msa0622630:intron | 40.0% |
| !! | ACCTGAAATAGGCTTTGAGA+TGG | + | chr4_2:75182493-75182512 | Msa0622630:intron | 40.0% |
| TCGGCAAGCAAATTCGAATT+TGG | + | chr4_2:75182570-75182589 | Msa0622630:intron | 40.0% | |
| CGGCAAGCAAATTCGAATTT+GGG | + | chr4_2:75182571-75182590 | Msa0622630:intron | 40.0% | |
| ! | TGTTCTTGCGTTTTCGATCT+TGG | + | chr4_2:75182853-75182872 | Msa0622630:intron | 40.0% |
| ! | CGTGTTCGTGCATTTGAAAT+GGG | + | chr4_2:75182881-75182900 | Msa0622630:intron | 40.0% |
| TACTTCACACAGTATCCTGA+AGG | + | chr4_2:75183212-75183231 | Msa0622630:intron | 40.0% | |
| TGGTATGGAACTTCTTTCTC+CGG | - | chr4_2:75183308-75183327 | None:intergenic | 40.0% | |
| AAGGTAACCTCATCCAAGAA+AGG | - | chr4_2:75183428-75183447 | None:intergenic | 40.0% | |
| TGGATGAGGTTACCTTTGAA+TGG | + | chr4_2:75183432-75183451 | Msa0622630:CDS | 40.0% | |
| GGATGAGGTTACCTTTGAAT+GGG | + | chr4_2:75183433-75183452 | Msa0622630:CDS | 40.0% | |
| TGTTCACGAATGTTAGGTAG+AGG | + | chr4_2:75183633-75183652 | Msa0622630:intron | 40.0% | |
| ! | TGCTTCGGATTCCTTTTCCT+TGG | - | chr4_2:75180965-75180984 | None:intergenic | 45.0% |
| GACGTGTAGCTAAGTTGCTT+CGG | - | chr4_2:75180980-75180999 | None:intergenic | 45.0% | |
| ATCCGAGGAAAAAAGGCTCT+CGG | + | chr4_2:75181114-75181133 | Msa0622630:CDS | 45.0% | |
| ! | ATCTTTTGCTTATCGGGTGG+TGG | - | chr4_2:75181192-75181211 | None:intergenic | 45.0% |
| ! | CGAATCTTTTGCTTATCGGG+TGG | - | chr4_2:75181195-75181214 | None:intergenic | 45.0% |
| AGCAAAAGATTCGAGAGTCC+AGG | + | chr4_2:75181202-75181221 | Msa0622630:intron | 45.0% | |
| !! | TATGGTGGCTTTGGAATGGA+TGG | - | chr4_2:75181488-75181507 | None:intergenic | 45.0% |
| TCAAAGGGTTATGGTGGCTT+TGG | - | chr4_2:75181497-75181516 | None:intergenic | 45.0% | |
| AAGGTGTAGGACTGTAGGTT+CGG | - | chr4_2:75181630-75181649 | None:intergenic | 45.0% | |
| ! | GAAAGAAGGTGTAGGACTGT+AGG | - | chr4_2:75181635-75181654 | None:intergenic | 45.0% |
| ! | TCATGCATTGAAGTGGTGGA+AGG | + | chr4_2:75181679-75181698 | Msa0622630:intron | 45.0% |
| ! | AGGTTTCGGTGCAAGAAGAA+TGG | - | chr4_2:75181787-75181806 | None:intergenic | 45.0% |
| !! | AGTTGAAAGTGGGCTGAACA+GGG | - | chr4_2:75181813-75181832 | None:intergenic | 45.0% |
| ! | GCATGTGGATTTTCTTGCTC+AGG | + | chr4_2:75181852-75181871 | Msa0622630:intron | 45.0% |
| TGGTTCATCCCCACTTGATA+TGG | + | chr4_2:75181960-75181979 | Msa0622630:intron | 45.0% | |
| GCCATCTCAAAGCCTATTTC+AGG | - | chr4_2:75182497-75182516 | None:intergenic | 45.0% | |
| GCGTGTTCGTGCATTTGAAA+TGG | + | chr4_2:75182880-75182899 | Msa0622630:intron | 45.0% | |
| ACGTTCTGTAATTGCTGCGT+AGG | + | chr4_2:75182916-75182935 | Msa0622630:intron | 45.0% | |
| GTGTTCCAGATTGTTTAGGC+AGG | + | chr4_2:75183026-75183045 | Msa0622630:intron | 45.0% | |
| AACTGCCTGCCTAAACAATC+TGG | - | chr4_2:75183034-75183053 | None:intergenic | 45.0% | |
| GATTGTTTAGGCAGGCAGTT+AGG | + | chr4_2:75183034-75183053 | Msa0622630:intron | 45.0% | |
| GTTGGCTGTGATTAAGACCA+AGG | + | chr4_2:75183247-75183266 | Msa0622630:CDS | 45.0% | |
| TTGAATTGTGCTTCTCGCCT+TGG | - | chr4_2:75183267-75183286 | None:intergenic | 45.0% | |
| ! | GGAGAAGTTGAGGAAGCATA+CGG | + | chr4_2:75183401-75183420 | Msa0622630:CDS | 45.0% |
| ATACGGTCCTTTCTTGGATG+AGG | + | chr4_2:75183418-75183437 | Msa0622630:CDS | 45.0% | |
| CGAATGTTAGGTAGAGGTAG+AGG | + | chr4_2:75183639-75183658 | Msa0622630:intron | 45.0% | |
| GTTTCGTGCGGTTGTTTAGA+GGG | + | chr4_2:75183786-75183805 | Msa0622630:three_prime_UTR | 45.0% | |
| GCAACTTAGCTACACGTCGA+AGG | + | chr4_2:75180982-75181001 | Msa0622630:CDS | 50.0% | |
| ACGTCAGACAACATGATCCG+AGG | + | chr4_2:75181099-75181118 | Msa0622630:CDS | 50.0% | |
| AACAATGCAGCTTGCGTTGC+GGG | - | chr4_2:75181167-75181186 | None:intergenic | 50.0% | |
| GAACAATGCAGCTTGCGTTG+CGG | - | chr4_2:75181168-75181187 | None:intergenic | 50.0% | |
| TGGATGGCCGAGAGATAGAA+AGG | - | chr4_2:75181472-75181491 | None:intergenic | 50.0% | |
| !! | GGGTTATGGTGGCTTTGGAA+TGG | - | chr4_2:75181492-75181511 | None:intergenic | 50.0% |
| ! | GTAGGACTGTAGGTTCGGTT+GGG | - | chr4_2:75181625-75181644 | None:intergenic | 50.0% |
| ! | TGTAGGACTGTAGGTTCGGT+TGG | - | chr4_2:75181626-75181645 | None:intergenic | 50.0% |
| GCTGAACAGGGGTTAGGTTT+CGG | - | chr4_2:75181801-75181820 | None:intergenic | 50.0% | |
| !! | GTTGAAAGTGGGCTGAACAG+GGG | - | chr4_2:75181812-75181831 | None:intergenic | 50.0% |
| !! | GAGTTGAAAGTGGGCTGAAC+AGG | - | chr4_2:75181814-75181833 | None:intergenic | 50.0% |
| TTGGCAGGGTTGACGATTCA+GGG | + | chr4_2:75183068-75183087 | Msa0622630:CDS | 50.0% | |
| ! | GGAAGCATACGGTCCTTTCT+TGG | + | chr4_2:75183412-75183431 | Msa0622630:CDS | 50.0% |
| TTAGGTAGAGGTAGAGGCAG+CGG | + | chr4_2:75183645-75183664 | Msa0622630:intron | 50.0% | |
| CTGGTAGCATAGGTTTCGTG+CGG | + | chr4_2:75183774-75183793 | Msa0622630:three_prime_UTR | 50.0% | |
| GGTTTCGTGCGGTTGTTTAG+AGG | + | chr4_2:75183785-75183804 | Msa0622630:three_prime_UTR | 50.0% | |
| !!! | CGCCGAGAGCCTTTTTTCCT+CGG | - | chr4_2:75181119-75181138 | None:intergenic | 55.0% |
| AAAAGGCTCTCGGCGAGAAG+CGG | + | chr4_2:75181124-75181143 | Msa0622630:CDS | 55.0% | |
| ! | CTGTAGGTTCGGTTGGGACT+AGG | - | chr4_2:75181619-75181638 | None:intergenic | 55.0% |
| !! | AAGTGGGCTGAACAGGGGTT+AGG | - | chr4_2:75181807-75181826 | None:intergenic | 55.0% |
| CAGTTAGGACCGAGGCTTCT+TGG | + | chr4_2:75183049-75183068 | Msa0622630:CDS | 55.0% | |
| TCAACCCTGCCAAGAAGCCT+CGG | - | chr4_2:75183061-75183080 | None:intergenic | 55.0% | |
| CTTGGCAGGGTTGACGATTC+AGG | + | chr4_2:75183067-75183086 | Msa0622630:CDS | 55.0% | |
| TGGCAGGGTTGACGATTCAG+GGG | + | chr4_2:75183069-75183088 | Msa0622630:CDS | 55.0% | |
| AAAGGCTCTCGGCGAGAAGC+GGG | + | chr4_2:75181125-75181144 | Msa0622630:CDS | 60.0% | |
| ! | GGTTCGGTTGGGACTAGGAG+AGG | - | chr4_2:75181614-75181633 | None:intergenic | 60.0% |
| TAGGCAGGCAGTTAGGACCG+AGG | + | chr4_2:75183041-75183060 | Msa0622630:intron | 60.0% | |
| TAGGACCGAGGCTTCTTGGC+AGG | + | chr4_2:75183053-75183072 | Msa0622630:CDS | 60.0% | |
| AGGACCGAGGCTTCTTGGCA+GGG | + | chr4_2:75183054-75183073 | Msa0622630:CDS | 60.0% | |
| AGAGGTAGAGGCAGCGGAAG+AGG | + | chr4_2:75183651-75183670 | Msa0622630:CDS | 60.0% | |
| TTGCGGGAGATACCCGCCCC+CGG | - | chr4_2:75181151-75181170 | None:intergenic | 70.0% | |
| GCTCTCGGCGAGAAGCGGGC+CGG | + | chr4_2:75181129-75181148 | Msa0622630:CDS | 75.0% | |
| CTCTCGGCGAGAAGCGGGCC+GGG | + | chr4_2:75181130-75181149 | Msa0622630:CDS | 75.0% | |
| TCTCGGCGAGAAGCGGGCCG+GGG | + | chr4_2:75181131-75181150 | Msa0622630:CDS | 75.0% | |
| ! | CTCGGCGAGAAGCGGGCCGG+GGG | + | chr4_2:75181132-75181151 | Msa0622630:CDS | 80.0% |
| ! | GGCGAGAAGCGGGCCGGGGG+CGG | + | chr4_2:75181135-75181154 | Msa0622630:CDS | 85.0% |
| ! | GCGAGAAGCGGGCCGGGGGC+GGG | + | chr4_2:75181136-75181155 | Msa0622630:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 75180951 | 75183937 | 75180951 | ID=Msa0622630;Name=Msa0622630 |
| chr4_2 | mRNA | 75180951 | 75183937 | 75180951 | ID=Msa0622630-mRNA-1;Parent=Msa0622630;Name=Msa0622630-mRNA-1;_AED=0.41;_eAED=0.71;_QI=0|0|0.2|0.6|0.25|0.4|5|253|168 |
| chr4_2 | exon | 75180951 | 75181003 | 75180951 | ID=Msa0622630-mRNA-1:exon:22804;Parent=Msa0622630-mRNA-1 |
| chr4_2 | exon | 75181029 | 75181157 | 75181029 | ID=Msa0622630-mRNA-1:exon:22805;Parent=Msa0622630-mRNA-1 |
| chr4_2 | exon | 75183048 | 75183090 | 75183048 | ID=Msa0622630-mRNA-1:exon:22806;Parent=Msa0622630-mRNA-1 |
| chr4_2 | exon | 75183224 | 75183469 | 75183224 | ID=Msa0622630-mRNA-1:exon:22807;Parent=Msa0622630-mRNA-1 |
| chr4_2 | exon | 75183649 | 75183937 | 75183649 | ID=Msa0622630-mRNA-1:exon:22808;Parent=Msa0622630-mRNA-1 |
| chr4_2 | CDS | 75180951 | 75181003 | 75180951 | ID=Msa0622630-mRNA-1:cds;Parent=Msa0622630-mRNA-1 |
| chr4_2 | CDS | 75181029 | 75181157 | 75181029 | ID=Msa0622630-mRNA-1:cds;Parent=Msa0622630-mRNA-1 |
| chr4_2 | CDS | 75183048 | 75183090 | 75183048 | ID=Msa0622630-mRNA-1:cds;Parent=Msa0622630-mRNA-1 |
| chr4_2 | CDS | 75183224 | 75183469 | 75183224 | ID=Msa0622630-mRNA-1:cds;Parent=Msa0622630-mRNA-1 |
| chr4_2 | CDS | 75183649 | 75183684 | 75183649 | ID=Msa0622630-mRNA-1:cds;Parent=Msa0622630-mRNA-1 |
| chr4_2 | three_prime_UTR | 75183685 | 75183937 | 75183685 | ID=Msa0622630-mRNA-1:three_prime_utr;Parent=Msa0622630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
