Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633970 | KEH29169.1 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 3.03e-154 | 437 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633970 | A0A072UHD2 | 95.690 | 232 | 10 | 0 | 1 | 232 | 1 | 232 | 1.45e-154 | 437 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010150 | Msa0633970 | 0.800797 | 1.217600e-48 | -8.615850e-47 |
| Msa0014590 | Msa0633970 | 0.802988 | 4.319582e-49 | -8.615850e-47 |
| Msa0024650 | Msa0633970 | 0.813952 | 1.972573e-51 | -8.615850e-47 |
| Msa0040210 | Msa0633970 | 0.811040 | 8.542272e-51 | -8.615850e-47 |
| Msa0059880 | Msa0633970 | 0.807654 | 4.548889e-50 | -8.615850e-47 |
| Msa0073110 | Msa0633970 | 0.806964 | 6.367736e-50 | -8.615850e-47 |
| Msa0074620 | Msa0633970 | 0.829179 | 5.948352e-55 | -8.615850e-47 |
| Msa0087900 | Msa0633970 | 0.812632 | 3.845781e-51 | -8.615850e-47 |
| Msa0095910 | Msa0633970 | 0.812423 | 4.270821e-51 | -8.615850e-47 |
| Msa0604280 | Msa0633970 | 0.813581 | 2.380481e-51 | -8.615850e-47 |
| Msa0616300 | Msa0633970 | 0.809979 | 1.447987e-50 | -8.615850e-47 |
| Msa0631700 | Msa0633970 | 0.805739 | 1.154403e-49 | -8.615850e-47 |
| Msa0633940 | Msa0633970 | 0.995022 | 2.667733e-212 | -8.615850e-47 |
| Msa0633970 | Msa0634290 | 0.815962 | 7.066031e-52 | -8.615850e-47 |
| Msa0633970 | Msa0639400 | 0.802658 | 5.054744e-49 | -8.615850e-47 |
| Msa0633970 | Msa0639410 | 0.809352 | 1.973901e-50 | -8.615850e-47 |
| Msa0633970 | Msa0643190 | 0.814494 | 1.497445e-51 | -8.615850e-47 |
| Msa0633970 | Msa0668220 | 0.806860 | 6.701698e-50 | -8.615850e-47 |
| Msa0633970 | Msa0671640 | 0.804510 | 2.086323e-49 | -8.615850e-47 |
| Msa0633970 | Msa0685080 | 0.821876 | 3.198022e-53 | -8.615850e-47 |
| Msa0633970 | Msa0715220 | 0.828428 | 9.042508e-55 | -8.615850e-47 |
| Msa0633970 | Msa0735140 | 0.801035 | 1.088545e-48 | -8.615850e-47 |
| Msa0633970 | Msa0741360 | 0.875064 | 4.134056e-68 | -8.615850e-47 |
| Msa0633970 | Msa0751960 | 0.814893 | 1.221375e-51 | -8.615850e-47 |
| Msa0633970 | Msa0754530 | 0.800612 | 1.327943e-48 | -8.615850e-47 |
| Msa0633970 | Msa0757120 | 0.808009 | 3.821827e-50 | -8.615850e-47 |
| Msa0633970 | Msa0768670 | 0.810717 | 1.003071e-50 | -8.615850e-47 |
| Msa0633970 | Msa0777070 | 0.834111 | 3.620881e-56 | -8.615850e-47 |
| Msa0633970 | Msa0783120 | 0.813909 | 2.016375e-51 | -8.615850e-47 |
| Msa0633970 | Msa0798150 | 0.814901 | 1.216604e-51 | -8.615850e-47 |
| Msa0633970 | Msa0814160 | 0.822559 | 2.220193e-53 | -8.615850e-47 |
| Msa0633970 | Msa0822400 | 0.836341 | 9.906425e-57 | -8.615850e-47 |
| Msa0633970 | Msa0854840 | 0.831224 | 1.884235e-55 | -8.615850e-47 |
| Msa0633970 | Msa0861730 | 0.825298 | 5.059240e-54 | -8.615850e-47 |
| Msa0633970 | Msa0895420 | 0.817298 | 3.544904e-52 | -8.615850e-47 |
| Msa0633970 | Msa0896910 | 0.814505 | 1.488569e-51 | -8.615850e-47 |
| Msa0633970 | Msa0896920 | 0.856974 | 2.237439e-62 | -8.615850e-47 |
| Msa0633970 | Msa0896950 | 0.829394 | 5.276237e-55 | -8.615850e-47 |
| Msa0633970 | Msa0898970 | 0.820212 | 7.729857e-53 | -8.615850e-47 |
| Msa0633970 | Msa0913550 | 0.811984 | 5.324573e-51 | -8.615850e-47 |
| Msa0633970 | Msa0916290 | 0.824524 | 7.702593e-54 | -8.615850e-47 |
| Msa0633970 | Msa0933590 | 0.813579 | 2.383584e-51 | -8.615850e-47 |
| Msa0633970 | Msa0933610 | 0.817836 | 2.682436e-52 | -8.615850e-47 |
| Msa0633970 | Msa0941120 | 0.819434 | 1.163742e-52 | -8.615850e-47 |
| Msa0633970 | Msa0946010 | 0.845130 | 4.921562e-59 | -8.615850e-47 |
| Msa0633970 | Msa0964510 | 0.815263 | 1.011232e-51 | -8.615850e-47 |
| Msa0633970 | Msa0987640 | 0.835044 | 2.109302e-56 | -8.615850e-47 |
| Msa0633970 | Msa0993700 | 0.812963 | 3.254761e-51 | -8.615850e-47 |
| Msa0633970 | Msa0995110 | 0.830670 | 2.576580e-55 | -8.615850e-47 |
| Msa0633970 | Msa0995610 | 0.806907 | 6.549494e-50 | -8.615850e-47 |
| Msa0633970 | Msa0995620 | 0.818482 | 1.915770e-52 | -8.615850e-47 |
| Msa0633970 | Msa0995630 | 0.813723 | 2.215124e-51 | -8.615850e-47 |
| Msa0633970 | Msa0996980 | 0.820564 | 6.415798e-53 | -8.615850e-47 |
| Msa0633970 | Msa0998780 | 0.816884 | 4.391949e-52 | -8.615850e-47 |
| Msa0633970 | Msa1006030 | 0.847873 | 8.781262e-60 | -8.615850e-47 |
| Msa0633970 | Msa1006170 | 0.855622 | 5.575298e-62 | -8.615850e-47 |
| Msa0633970 | Msa1018590 | 0.843825 | 1.103853e-58 | -8.615850e-47 |
| Msa0633970 | Msa1022490 | 0.823462 | 1.367532e-53 | -8.615850e-47 |
| Msa0633970 | Msa1022510 | 0.836275 | 1.029586e-56 | -8.615850e-47 |
| Msa0633970 | Msa1024350 | 0.833659 | 4.697956e-56 | -8.615850e-47 |
| Msa0633970 | Msa1024480 | 0.802968 | 4.361545e-49 | -8.615850e-47 |
| Msa0633970 | Msa1026050 | 0.815885 | 7.349618e-52 | -8.615850e-47 |
| Msa0633970 | Msa1041910 | 0.809632 | 1.718921e-50 | -8.615850e-47 |
| Msa0633970 | Msa1048350 | 0.813344 | 2.683700e-51 | -8.615850e-47 |
| Msa0633970 | Msa1048390 | 0.815539 | 8.778549e-52 | -8.615850e-47 |
| Msa0633970 | Msa1048400 | 0.808983 | 2.368091e-50 | -8.615850e-47 |
| Msa0633970 | Msa1061670 | 0.832039 | 1.186889e-55 | -8.615850e-47 |
| Msa0633970 | Msa1064940 | 0.829859 | 4.066836e-55 | -8.615850e-47 |
| Msa0633970 | Msa1075030 | 0.800780 | 1.227248e-48 | -8.615850e-47 |
| Msa0633970 | Msa1087370 | 0.810742 | 9.908182e-51 | -8.615850e-47 |
| Msa0633970 | Msa1087380 | 0.804670 | 1.932573e-49 | -8.615850e-47 |
| Msa0633970 | Msa1100330 | 0.811052 | 8.489666e-51 | -8.615850e-47 |
| Msa0633970 | Msa1104960 | 0.809599 | 1.747512e-50 | -8.615850e-47 |
| Msa0633970 | Msa1106680 | 0.839337 | 1.683007e-57 | -8.615850e-47 |
| Msa0633970 | Msa1106960 | 0.829678 | 4.500616e-55 | -8.615850e-47 |
| Msa0633970 | Msa1108560 | 0.808872 | 2.501306e-50 | -8.615850e-47 |
| Msa0633970 | Msa1138110 | 0.801135 | 1.038403e-48 | -8.615850e-47 |
| Msa0633970 | Msa1147030 | 0.858090 | 1.045846e-62 | -8.615850e-47 |
| Msa0633970 | Msa1148210 | 0.835924 | 1.264168e-56 | -8.615850e-47 |
| Msa0633970 | Msa1167960 | 0.823969 | 1.040245e-53 | -8.615850e-47 |
| Msa0633970 | Msa1170340 | 0.827000 | 1.991786e-54 | -8.615850e-47 |
| Msa0633970 | Msa1181090 | 0.815771 | 7.795053e-52 | -8.615850e-47 |
| Msa0633970 | Msa1197910 | 0.802014 | 6.858359e-49 | -8.615850e-47 |
| Msa0633970 | Msa1225850 | 0.801981 | 6.967067e-49 | -8.615850e-47 |
| Msa0633970 | Msa1231720 | 0.849202 | 3.762039e-60 | -8.615850e-47 |
| Msa0633970 | Msa1236680 | 0.835083 | 2.062252e-56 | -8.615850e-47 |
| Msa0633970 | Msa1263110 | 0.803035 | 4.224565e-49 | -8.615850e-47 |
| Msa0633970 | Msa1294020 | 0.836540 | 8.815097e-57 | -8.615850e-47 |
| Msa0633970 | Msa1319010 | 0.832812 | 7.632393e-56 | -8.615850e-47 |
| Msa0633970 | Msa1322500 | 0.803980 | 2.690786e-49 | -8.615850e-47 |
| Msa0633970 | Msa1350870 | 0.810482 | 1.127433e-50 | -8.615850e-47 |
| Msa0633970 | Msa1355340 | 0.841306 | 5.148722e-58 | -8.615850e-47 |
| Msa0633970 | Msa1357840 | 0.803853 | 2.858613e-49 | -8.615850e-47 |
| Msa0633970 | Msa1406840 | 0.819327 | 1.231329e-52 | -8.615850e-47 |
| Msa0633970 | Msa1411550 | 0.839589 | 1.447733e-57 | -8.615850e-47 |
| Msa0633970 | Msa1412360 | 0.800630 | 1.317167e-48 | -8.615850e-47 |
| Msa0633970 | Msa1445900 | 0.814594 | 1.422562e-51 | -8.615850e-47 |
| Msa0633970 | Msa1453650 | 0.802504 | 5.438028e-49 | -8.615850e-47 |
| Msa0633970 | Msa1456600 | 0.809401 | 1.927382e-50 | -8.615850e-47 |
| Msa0633970 | Msa1458270 | 0.809916 | 1.493337e-50 | -8.615850e-47 |
| Msa0633970 | Msa1459610 | 0.843120 | 1.702997e-58 | -8.615850e-47 |
| Msa0134570 | Msa0633970 | 0.812473 | 4.166366e-51 | -8.615850e-47 |
| Msa0150910 | Msa0633970 | 0.800729 | 1.257402e-48 | -8.615850e-47 |
| Msa0150920 | Msa0633970 | 0.813455 | 2.538243e-51 | -8.615850e-47 |
| Msa0163340 | Msa0633970 | 0.810431 | 1.156516e-50 | -8.615850e-47 |
| Msa0163690 | Msa0633970 | 0.801749 | 7.772710e-49 | -8.615850e-47 |
| Msa0170990 | Msa0633970 | 0.822982 | 1.770200e-53 | -8.615850e-47 |
| Msa0190670 | Msa0633970 | 0.807765 | 4.308638e-50 | -8.615850e-47 |
| Msa0190890 | Msa0633970 | 0.807123 | 5.893160e-50 | -8.615850e-47 |
| Msa0194230 | Msa0633970 | 0.804578 | 2.019746e-49 | -8.615850e-47 |
| Msa0209060 | Msa0633970 | 0.837610 | 4.694807e-57 | -8.615850e-47 |
| Msa0212550 | Msa0633970 | 0.817732 | 2.830414e-52 | -8.615850e-47 |
| Msa0220090 | Msa0633970 | 0.807537 | 4.816117e-50 | -8.615850e-47 |
| Msa0366510 | Msa0633970 | 0.852184 | 5.451614e-61 | -8.615850e-47 |
| Msa0374040 | Msa0633970 | 0.829901 | 3.972077e-55 | -8.615850e-47 |
| Msa0396700 | Msa0633970 | 0.807720 | 4.404247e-50 | -8.615850e-47 |
| Msa0396790 | Msa0633970 | 0.803425 | 3.508296e-49 | -8.615850e-47 |
| Msa0414480 | Msa0633970 | 0.837892 | 3.975742e-57 | -8.615850e-47 |
| Msa0418160 | Msa0633970 | 0.842321 | 2.777794e-58 | -8.615850e-47 |
| Msa0436810 | Msa0633970 | 0.801330 | 9.473563e-49 | -8.615850e-47 |
| Msa0444400 | Msa0633970 | 0.810633 | 1.045983e-50 | -8.615850e-47 |
| Msa0454160 | Msa0633970 | 0.803180 | 3.943080e-49 | -8.615850e-47 |
| Msa0454770 | Msa0633970 | 0.803935 | 2.748804e-49 | -8.615850e-47 |
| Msa0459300 | Msa0633970 | 0.807761 | 4.316408e-50 | -8.615850e-47 |
| Msa0464310 | Msa0633970 | 0.845591 | 3.692056e-59 | -8.615850e-47 |
| Msa0472390 | Msa0633970 | 0.800396 | 1.469661e-48 | -8.615850e-47 |
| Msa0242830 | Msa0633970 | 0.806328 | 8.678194e-50 | -8.615850e-47 |
| Msa0252930 | Msa0633970 | 0.806547 | 7.800781e-50 | -8.615850e-47 |
| Msa0272210 | Msa0633970 | 0.803989 | 2.678361e-49 | -8.615850e-47 |
| Msa0274250 | Msa0633970 | 0.821214 | 4.547761e-53 | -8.615850e-47 |
| Msa0274260 | Msa0633970 | 0.805403 | 1.357517e-49 | -8.615850e-47 |
| Msa0278460 | Msa0633970 | 0.806896 | 6.585274e-50 | -8.615850e-47 |
| Msa0278950 | Msa0633970 | 0.801935 | 7.118180e-49 | -8.615850e-47 |
| Msa0281190 | Msa0633970 | 0.804425 | 2.174139e-49 | -8.615850e-47 |
| Msa0288540 | Msa0633970 | 0.837406 | 5.295709e-57 | -8.615850e-47 |
| Msa0326770 | Msa0633970 | 0.835326 | 1.790887e-56 | -8.615850e-47 |
| Msa0328090 | Msa0633970 | 0.801287 | 9.668214e-49 | -8.615850e-47 |
| Msa0349910 | Msa0633970 | 0.801553 | 8.528101e-49 | -8.615850e-47 |
| Msa0490060 | Msa0633970 | 0.815525 | 8.839532e-52 | -8.615850e-47 |
| Msa0491800 | Msa0633970 | 0.800487 | 1.408646e-48 | -8.615850e-47 |
| Msa0491950 | Msa0633970 | 0.801609 | 8.305772e-49 | -8.615850e-47 |
| Msa0515130 | Msa0633970 | 0.833401 | 5.448913e-56 | -8.615850e-47 |
| Msa0515150 | Msa0633970 | 0.820375 | 7.091187e-53 | -8.615850e-47 |
| Msa0535570 | Msa0633970 | 0.816787 | 4.619133e-52 | -8.615850e-47 |
| Msa0538440 | Msa0633970 | 0.824951 | 6.110744e-54 | -8.615850e-47 |
| Msa0538530 | Msa0633970 | 0.815386 | 9.493024e-52 | -8.615850e-47 |
| Msa0543740 | Msa0633970 | 0.808674 | 2.758044e-50 | -8.615850e-47 |
| Msa0546760 | Msa0633970 | 0.803285 | 3.749184e-49 | -8.615850e-47 |
| Msa0548790 | Msa0633970 | 0.805527 | 1.278959e-49 | -8.615850e-47 |
| Msa0554660 | Msa0633970 | 0.820729 | 5.879494e-53 | -8.615850e-47 |
| Msa0589740 | Msa0633970 | 0.805950 | 1.042418e-49 | -8.615850e-47 |
| Msa0591490 | Msa0633970 | 0.825414 | 4.749094e-54 | -8.615850e-47 |
| Msa0593870 | Msa0633970 | 0.990933 | 4.761923e-185 | -8.615850e-47 |
| Msa0594330 | Msa0633970 | 0.814307 | 1.646755e-51 | -8.615850e-47 |
| Msa0594630 | Msa0633970 | 0.830603 | 2.676387e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0633970 | MtrunA17_Chr4g0012571 | 94.805 | 231 | 12 | 0 | 1 | 231 | 1 | 231 | 2.34e-156 | 432 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 47 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTTTGCCCTTCTTCTCTT+TGG | 0.204053 | 4_3:+20422018 | Msa0633970:CDS |
| TCAACTAGGTCAGCTGGATT+TGG | 0.237066 | 4_3:-20422258 | None:intergenic |
| CTAACATCCTTTACATCTTC+AGG | 0.271060 | 4_3:-20421147 | None:intergenic |
| TGACCATATTGTATTGGATT+TGG | 0.293386 | 4_3:+20421119 | Msa0633970:CDS |
| TCGTCACTCGCTTAAAGTTT+TGG | 0.323243 | 4_3:+20422137 | Msa0633970:CDS |
| TAGATTACCAACTACTTTGA+AGG | 0.357772 | 4_3:+20421771 | Msa0633970:intron |
| TCTCTTTGGAATACTTTCTT+CGG | 0.374925 | 4_3:+20422032 | Msa0633970:CDS |
| CTTCCAAATCCAATACAATA+TGG | 0.375006 | 4_3:-20421122 | None:intergenic |
| CAACTAGGTCAGCTGGATTT+GGG | 0.375194 | 4_3:-20422257 | None:intergenic |
| TGCATCTACTGCTCGCTAAT+CGG | 0.377217 | 4_3:+20421946 | Msa0633970:CDS |
| TTCTAATTCTGCATACTGAT+AGG | 0.378805 | 4_3:-20421170 | None:intergenic |
| TTTGGGTTGTGCTCTTCGTA+TGG | 0.396092 | 4_3:+20422091 | Msa0633970:CDS |
| TTGGGTTGTGCTCTTCGTAT+GGG | 0.402906 | 4_3:+20422092 | Msa0633970:CDS |
| AAAGTATTCCAAAGAGAAGA+AGG | 0.428632 | 4_3:-20422026 | None:intergenic |
| GGTGTTGATATTCAATACTA+AGG | 0.429220 | 4_3:+20422203 | Msa0633970:CDS |
| TCTTGATCCTTCAAAGTAGT+TGG | 0.429294 | 4_3:-20421778 | None:intergenic |
| GAGTGACGAGCAAGTATAAC+TGG | 0.443034 | 4_3:-20422123 | None:intergenic |
| ATGGCATGGCATGGGATTGA+AGG | 0.461512 | 4_3:-20421808 | None:intergenic |
| CTACCTTCAACTAGGTCAGC+TGG | 0.475286 | 4_3:-20422264 | None:intergenic |
| AATCCAGCTGACCTAGTTGA+AGG | 0.483463 | 4_3:+20422261 | Msa0633970:CDS |
| TTTCTTGACACAATACTCAT+TGG | 0.492166 | 4_3:+20421838 | Msa0633970:CDS |
| ATGAACTTTGTGATCATCAA+AGG | 0.497786 | 4_3:-20421899 | None:intergenic |
| GGAAGAACCTGAAGATGTAA+AGG | 0.518106 | 4_3:+20421140 | Msa0633970:CDS |
| AACACAAAGATGGCATGGCA+TGG | 0.520422 | 4_3:-20421817 | None:intergenic |
| GTGTAATGACCATATTGTAT+TGG | 0.548354 | 4_3:+20421113 | Msa0633970:CDS |
| ACACAAAGATGGCATGGCAT+GGG | 0.550895 | 4_3:-20421816 | None:intergenic |
| CGGCAGCAAGATGGAGAGAA+GGG | 0.553496 | 4_3:-20422058 | None:intergenic |
| TGGGTTGTGCTCTTCGTATG+GGG | 0.556531 | 4_3:+20422093 | Msa0633970:CDS |
| AAGTTGTCGCGGCAGCAAGA+TGG | 0.558737 | 4_3:-20422067 | None:intergenic |
| TGAACTTTGTGATCATCAAA+GGG | 0.562970 | 4_3:-20421898 | None:intergenic |
| GATGCAGATGGATGTCAAGA+AGG | 0.564412 | 4_3:-20421929 | None:intergenic |
| ATTAAGATCTACCTTCAACT+AGG | 0.573127 | 4_3:-20422272 | None:intergenic |
| TGGCATGGCATGGGATTGAA+GGG | 0.575309 | 4_3:-20421807 | None:intergenic |
| TAGGTCAGCTGGATTTGGGT+AGG | 0.578541 | 4_3:-20422253 | None:intergenic |
| TGTGTCAAGAAACACAAAGA+TGG | 0.584873 | 4_3:-20421827 | None:intergenic |
| CTTGATTATAGTATTTCACA+CGG | 0.587536 | 4_3:-20421257 | None:intergenic |
| CAAGAAACACAAAGATGGCA+TGG | 0.592259 | 4_3:-20421822 | None:intergenic |
| GCGGCAGCAAGATGGAGAGA+AGG | 0.593311 | 4_3:-20422059 | None:intergenic |
| AAGTATTCCAAAGAGAAGAA+GGG | 0.599617 | 4_3:-20422025 | None:intergenic |
| GTGTCGGATAATAGAAGCGA+TGG | 0.602232 | 4_3:+20422161 | Msa0633970:CDS |
| TAGCGAGCAGTAGATGCAGA+TGG | 0.605364 | 4_3:-20421941 | None:intergenic |
| TGAAATACTATAATCAAGCA+AGG | 0.609382 | 4_3:+20421262 | Msa0633970:CDS |
| GGTAGTAAAGATTACTACCA+TGG | 0.620964 | 4_3:+20422182 | Msa0633970:CDS |
| AATACTAAGGATTCAGCCAG+TGG | 0.626440 | 4_3:+20422216 | Msa0633970:CDS |
| AAGATCTACACGAAGACTCG+TGG | 0.646014 | 4_3:+20421973 | Msa0633970:CDS |
| TTGATTATAGTATTTCACAC+GGG | 0.658993 | 4_3:-20421256 | None:intergenic |
| AGTATTGAATATCAACACCA+TGG | 0.687774 | 4_3:-20422199 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTTAATAGTAC+TGG | + | chr4_3:20421545-20421564 | Msa0633970:intron | 10.0% |
| !! | CAATTAAAATAAATAAAAGA+GGG | - | chr4_3:20421614-20421633 | None:intergenic | 10.0% |
| !!! | CTCTTTTATTTATTTTAATT+GGG | + | chr4_3:20421613-20421632 | Msa0633970:intron | 10.0% |
| !! | ATTGTCAAAAAAAAAAATTA+GGG | - | chr4_3:20421707-20421726 | None:intergenic | 10.0% |
| !!! | ATATGTTTTATATATCTAAT+CGG | + | chr4_3:20421742-20421761 | Msa0633970:intron | 10.0% |
| !! | ATATATTAATTTAATAGTAC+TGG | + | chr4_3:20421545-20421564 | Msa0633970:intron | 10.0% |
| !! | CAATTAAAATAAATAAAAGA+GGG | - | chr4_3:20421614-20421633 | None:intergenic | 10.0% |
| !!! | CTCTTTTATTTATTTTAATT+GGG | + | chr4_3:20421613-20421632 | Msa0633970:intron | 10.0% |
| !! | ATTGTCAAAAAAAAAAATTA+GGG | - | chr4_3:20421707-20421726 | None:intergenic | 10.0% |
| !!! | ATATGTTTTATATATCTAAT+CGG | + | chr4_3:20421742-20421761 | Msa0633970:intron | 10.0% |
| !!! | TATTATTTTGTTTTTTTGAC+TGG | + | chr4_3:20421329-20421348 | Msa0633970:intron | 15.0% |
| !!! | TTTTTATGATACTTTGTTTA+CGG | - | chr4_3:20421453-20421472 | None:intergenic | 15.0% |
| !!! | TAGCCTTATTTAAATATTTT+GGG | - | chr4_3:20421503-20421522 | None:intergenic | 15.0% |
| !! | CCAATTAAAATAAATAAAAG+AGG | - | chr4_3:20421615-20421634 | None:intergenic | 15.0% |
| !!! | CCTCTTTTATTTATTTTAAT+TGG | + | chr4_3:20421612-20421631 | Msa0633970:intron | 15.0% |
| !!! | TATTTTTGTTTATTATGGTT+TGG | + | chr4_3:20421663-20421682 | Msa0633970:intron | 15.0% |
| !! | CATTGTCAAAAAAAAAAATT+AGG | - | chr4_3:20421708-20421727 | None:intergenic | 15.0% |
| !!! | TATTATTTTGTTTTTTTGAC+TGG | + | chr4_3:20421329-20421348 | Msa0633970:intron | 15.0% |
| !!! | TTTTTATGATACTTTGTTTA+CGG | - | chr4_3:20421453-20421472 | None:intergenic | 15.0% |
| !!! | TAGCCTTATTTAAATATTTT+GGG | - | chr4_3:20421503-20421522 | None:intergenic | 15.0% |
| !! | CCAATTAAAATAAATAAAAG+AGG | - | chr4_3:20421615-20421634 | None:intergenic | 15.0% |
| !!! | CCTCTTTTATTTATTTTAAT+TGG | + | chr4_3:20421612-20421631 | Msa0633970:intron | 15.0% |
| !!! | TATTTTTGTTTATTATGGTT+TGG | + | chr4_3:20421663-20421682 | Msa0633970:intron | 15.0% |
| !! | CATTGTCAAAAAAAAAAATT+AGG | - | chr4_3:20421708-20421727 | None:intergenic | 15.0% |
| !! | TAATTACTCTTTCCATTATA+TGG | + | chr4_3:20421288-20421307 | Msa0633970:intron | 20.0% |
| !!! | AGAACTTTTAAACCATATAA+TGG | - | chr4_3:20421303-20421322 | None:intergenic | 20.0% |
| !! | GTGAAGAATCATATAAAATA+GGG | - | chr4_3:20421476-20421495 | None:intergenic | 20.0% |
| !! | AGTGAAGAATCATATAAAAT+AGG | - | chr4_3:20421477-20421496 | None:intergenic | 20.0% |
| !! | GAACCCAAAATATTTAAATA+AGG | + | chr4_3:20421497-20421516 | Msa0633970:intron | 20.0% |
| !!! | CTAGCCTTATTTAAATATTT+TGG | - | chr4_3:20421504-20421523 | None:intergenic | 20.0% |
| !!! | GCACATATTTTTGTTTATTA+TGG | + | chr4_3:20421658-20421677 | Msa0633970:intron | 20.0% |
| !!! | TTTTGACAATGTTTTATGTA+TGG | + | chr4_3:20421717-20421736 | Msa0633970:intron | 20.0% |
| !! | TAATTACTCTTTCCATTATA+TGG | + | chr4_3:20421288-20421307 | Msa0633970:intron | 20.0% |
| !!! | AGAACTTTTAAACCATATAA+TGG | - | chr4_3:20421303-20421322 | None:intergenic | 20.0% |
| !! | GTGAAGAATCATATAAAATA+GGG | - | chr4_3:20421476-20421495 | None:intergenic | 20.0% |
| !! | AGTGAAGAATCATATAAAAT+AGG | - | chr4_3:20421477-20421496 | None:intergenic | 20.0% |
| !! | GAACCCAAAATATTTAAATA+AGG | + | chr4_3:20421497-20421516 | Msa0633970:intron | 20.0% |
| !!! | CTAGCCTTATTTAAATATTT+TGG | - | chr4_3:20421504-20421523 | None:intergenic | 20.0% |
| !!! | GCACATATTTTTGTTTATTA+TGG | + | chr4_3:20421658-20421677 | Msa0633970:intron | 20.0% |
| !!! | TTTTGACAATGTTTTATGTA+TGG | + | chr4_3:20421717-20421736 | Msa0633970:intron | 20.0% |
| ! | TAGAAAAAGAAGACTTAAAG+TGG | + | chr4_3:20421188-20421207 | Msa0633970:CDS | 25.0% |
| !! | TCACTAACTTCAATTTTCTT+TGG | - | chr4_3:20421227-20421246 | None:intergenic | 25.0% |
| ! | TTGATTATAGTATTTCACAC+GGG | - | chr4_3:20421259-20421278 | None:intergenic | 25.0% |
| ! | CTTGATTATAGTATTTCACA+CGG | - | chr4_3:20421260-20421279 | None:intergenic | 25.0% |
| ! | TGAAATACTATAATCAAGCA+AGG | + | chr4_3:20421262-20421281 | Msa0633970:CDS | 25.0% |
| ! | TACGGATTTGATTAAACATA+AGG | - | chr4_3:20421435-20421454 | None:intergenic | 25.0% |
| ! | AAAAGAGGGTAGTTAATAAA+AGG | - | chr4_3:20421600-20421619 | None:intergenic | 25.0% |
| !!! | CAAAGCTAAGAATTTTTTCT+TGG | - | chr4_3:20422005-20422024 | None:intergenic | 25.0% |
| ! | TAGAAAAAGAAGACTTAAAG+TGG | + | chr4_3:20421188-20421207 | Msa0633970:CDS | 25.0% |
| !! | TCACTAACTTCAATTTTCTT+TGG | - | chr4_3:20421227-20421246 | None:intergenic | 25.0% |
| ! | TTGATTATAGTATTTCACAC+GGG | - | chr4_3:20421259-20421278 | None:intergenic | 25.0% |
| ! | CTTGATTATAGTATTTCACA+CGG | - | chr4_3:20421260-20421279 | None:intergenic | 25.0% |
| ! | TGAAATACTATAATCAAGCA+AGG | + | chr4_3:20421262-20421281 | Msa0633970:CDS | 25.0% |
| ! | TACGGATTTGATTAAACATA+AGG | - | chr4_3:20421435-20421454 | None:intergenic | 25.0% |
| ! | AAAAGAGGGTAGTTAATAAA+AGG | - | chr4_3:20421600-20421619 | None:intergenic | 25.0% |
| !!! | CAAAGCTAAGAATTTTTTCT+TGG | - | chr4_3:20422005-20422024 | None:intergenic | 25.0% |
| GTGTAATGACCATATTGTAT+TGG | + | chr4_3:20421113-20421132 | Msa0633970:CDS | 30.0% | |
| TGACCATATTGTATTGGATT+TGG | + | chr4_3:20421119-20421138 | Msa0633970:CDS | 30.0% | |
| CTTCCAAATCCAATACAATA+TGG | - | chr4_3:20421125-20421144 | None:intergenic | 30.0% | |
| TTCTAATTCTGCATACTGAT+AGG | - | chr4_3:20421173-20421192 | None:intergenic | 30.0% | |
| !! | TTTTCTTTGGTTTACTCTCA+TGG | - | chr4_3:20421214-20421233 | None:intergenic | 30.0% |
| TAGATTACCAACTACTTTGA+AGG | + | chr4_3:20421771-20421790 | Msa0633970:intron | 30.0% | |
| TTTCTTGACACAATACTCAT+TGG | + | chr4_3:20421838-20421857 | Msa0633970:CDS | 30.0% | |
| TGAACTTTGTGATCATCAAA+GGG | - | chr4_3:20421901-20421920 | None:intergenic | 30.0% | |
| ATGAACTTTGTGATCATCAA+AGG | - | chr4_3:20421902-20421921 | None:intergenic | 30.0% | |
| !!! | AGCTAAGAATTTTTTCTTGG+TGG | - | chr4_3:20422002-20422021 | None:intergenic | 30.0% |
| AAGTATTCCAAAGAGAAGAA+GGG | - | chr4_3:20422028-20422047 | None:intergenic | 30.0% | |
| ! | AAAGTATTCCAAAGAGAAGA+AGG | - | chr4_3:20422029-20422048 | None:intergenic | 30.0% |
| !! | TCTCTTTGGAATACTTTCTT+CGG | + | chr4_3:20422032-20422051 | Msa0633970:CDS | 30.0% |
| ! | AGTATTGAATATCAACACCA+TGG | - | chr4_3:20422202-20422221 | None:intergenic | 30.0% |
| !! | GGTGTTGATATTCAATACTA+AGG | + | chr4_3:20422203-20422222 | Msa0633970:CDS | 30.0% |
| GTGTAATGACCATATTGTAT+TGG | + | chr4_3:20421113-20421132 | Msa0633970:CDS | 30.0% | |
| TGACCATATTGTATTGGATT+TGG | + | chr4_3:20421119-20421138 | Msa0633970:CDS | 30.0% | |
| CTTCCAAATCCAATACAATA+TGG | - | chr4_3:20421125-20421144 | None:intergenic | 30.0% | |
| TTCTAATTCTGCATACTGAT+AGG | - | chr4_3:20421173-20421192 | None:intergenic | 30.0% | |
| !! | TTTTCTTTGGTTTACTCTCA+TGG | - | chr4_3:20421214-20421233 | None:intergenic | 30.0% |
| TAGATTACCAACTACTTTGA+AGG | + | chr4_3:20421771-20421790 | Msa0633970:intron | 30.0% | |
| TTTCTTGACACAATACTCAT+TGG | + | chr4_3:20421838-20421857 | Msa0633970:CDS | 30.0% | |
| TGAACTTTGTGATCATCAAA+GGG | - | chr4_3:20421901-20421920 | None:intergenic | 30.0% | |
| ATGAACTTTGTGATCATCAA+AGG | - | chr4_3:20421902-20421921 | None:intergenic | 30.0% | |
| !!! | AGCTAAGAATTTTTTCTTGG+TGG | - | chr4_3:20422002-20422021 | None:intergenic | 30.0% |
| AAGTATTCCAAAGAGAAGAA+GGG | - | chr4_3:20422028-20422047 | None:intergenic | 30.0% | |
| ! | AAAGTATTCCAAAGAGAAGA+AGG | - | chr4_3:20422029-20422048 | None:intergenic | 30.0% |
| !! | TCTCTTTGGAATACTTTCTT+CGG | + | chr4_3:20422032-20422051 | Msa0633970:CDS | 30.0% |
| ! | AGTATTGAATATCAACACCA+TGG | - | chr4_3:20422202-20422221 | None:intergenic | 30.0% |
| !! | GGTGTTGATATTCAATACTA+AGG | + | chr4_3:20422203-20422222 | Msa0633970:CDS | 30.0% |
| CTAACATCCTTTACATCTTC+AGG | - | chr4_3:20421150-20421169 | None:intergenic | 35.0% | |
| GGGTCAAATTTCTAACAACT+AGG | + | chr4_3:20421633-20421652 | Msa0633970:intron | 35.0% | |
| TCTTGATCCTTCAAAGTAGT+TGG | - | chr4_3:20421781-20421800 | None:intergenic | 35.0% | |
| TGTGTCAAGAAACACAAAGA+TGG | - | chr4_3:20421830-20421849 | None:intergenic | 35.0% | |
| GGTAGTAAAGATTACTACCA+TGG | + | chr4_3:20422182-20422201 | Msa0633970:CDS | 35.0% | |
| CTAACATCCTTTACATCTTC+AGG | - | chr4_3:20421150-20421169 | None:intergenic | 35.0% | |
| GGGTCAAATTTCTAACAACT+AGG | + | chr4_3:20421633-20421652 | Msa0633970:intron | 35.0% | |
| TCTTGATCCTTCAAAGTAGT+TGG | - | chr4_3:20421781-20421800 | None:intergenic | 35.0% | |
| TGTGTCAAGAAACACAAAGA+TGG | - | chr4_3:20421830-20421849 | None:intergenic | 35.0% | |
| GGTAGTAAAGATTACTACCA+TGG | + | chr4_3:20422182-20422201 | Msa0633970:CDS | 35.0% | |
| GGAAGAACCTGAAGATGTAA+AGG | + | chr4_3:20421140-20421159 | Msa0633970:CDS | 40.0% | |
| CAAGAAACACAAAGATGGCA+TGG | - | chr4_3:20421825-20421844 | None:intergenic | 40.0% | |
| ACAACCCAAAAAAGTTGTCG+CGG | - | chr4_3:20422081-20422100 | None:intergenic | 40.0% | |
| ! | TCGTCACTCGCTTAAAGTTT+TGG | + | chr4_3:20422137-20422156 | Msa0633970:CDS | 40.0% |
| !! | CGCTTAAAGTTTTGGTGTGT+CGG | + | chr4_3:20422145-20422164 | Msa0633970:CDS | 40.0% |
| AATACTAAGGATTCAGCCAG+TGG | + | chr4_3:20422216-20422235 | Msa0633970:CDS | 40.0% | |
| GGAAGAACCTGAAGATGTAA+AGG | + | chr4_3:20421140-20421159 | Msa0633970:CDS | 40.0% | |
| CAAGAAACACAAAGATGGCA+TGG | - | chr4_3:20421825-20421844 | None:intergenic | 40.0% | |
| ACAACCCAAAAAAGTTGTCG+CGG | - | chr4_3:20422081-20422100 | None:intergenic | 40.0% | |
| ! | TCGTCACTCGCTTAAAGTTT+TGG | + | chr4_3:20422137-20422156 | Msa0633970:CDS | 40.0% |
| !! | CGCTTAAAGTTTTGGTGTGT+CGG | + | chr4_3:20422145-20422164 | Msa0633970:CDS | 40.0% |
| AATACTAAGGATTCAGCCAG+TGG | + | chr4_3:20422216-20422235 | Msa0633970:CDS | 40.0% | |
| ACACAAAGATGGCATGGCAT+GGG | - | chr4_3:20421819-20421838 | None:intergenic | 45.0% | |
| AACACAAAGATGGCATGGCA+TGG | - | chr4_3:20421820-20421839 | None:intergenic | 45.0% | |
| GATGCAGATGGATGTCAAGA+AGG | - | chr4_3:20421932-20421951 | None:intergenic | 45.0% | |
| TGCATCTACTGCTCGCTAAT+CGG | + | chr4_3:20421946-20421965 | Msa0633970:CDS | 45.0% | |
| AAGATCTACACGAAGACTCG+TGG | + | chr4_3:20421973-20421992 | Msa0633970:CDS | 45.0% | |
| AGCTTTGCCCTTCTTCTCTT+TGG | + | chr4_3:20422018-20422037 | Msa0633970:CDS | 45.0% | |
| !! | TTTGGGTTGTGCTCTTCGTA+TGG | + | chr4_3:20422091-20422110 | Msa0633970:CDS | 45.0% |
| ! | TTGGGTTGTGCTCTTCGTAT+GGG | + | chr4_3:20422092-20422111 | Msa0633970:CDS | 45.0% |
| GAGTGACGAGCAAGTATAAC+TGG | - | chr4_3:20422126-20422145 | None:intergenic | 45.0% | |
| GTGTCGGATAATAGAAGCGA+TGG | + | chr4_3:20422161-20422180 | Msa0633970:CDS | 45.0% | |
| !! | GGTTGTTTTGTTGCTTCCAC+TGG | - | chr4_3:20422235-20422254 | None:intergenic | 45.0% |
| CAACTAGGTCAGCTGGATTT+GGG | - | chr4_3:20422260-20422279 | None:intergenic | 45.0% | |
| TCAACTAGGTCAGCTGGATT+TGG | - | chr4_3:20422261-20422280 | None:intergenic | 45.0% | |
| AATCCAGCTGACCTAGTTGA+AGG | + | chr4_3:20422261-20422280 | Msa0633970:CDS | 45.0% | |
| ACACAAAGATGGCATGGCAT+GGG | - | chr4_3:20421819-20421838 | None:intergenic | 45.0% | |
| AACACAAAGATGGCATGGCA+TGG | - | chr4_3:20421820-20421839 | None:intergenic | 45.0% | |
| GATGCAGATGGATGTCAAGA+AGG | - | chr4_3:20421932-20421951 | None:intergenic | 45.0% | |
| TGCATCTACTGCTCGCTAAT+CGG | + | chr4_3:20421946-20421965 | Msa0633970:CDS | 45.0% | |
| AAGATCTACACGAAGACTCG+TGG | + | chr4_3:20421973-20421992 | Msa0633970:CDS | 45.0% | |
| AGCTTTGCCCTTCTTCTCTT+TGG | + | chr4_3:20422018-20422037 | Msa0633970:CDS | 45.0% | |
| !! | TTTGGGTTGTGCTCTTCGTA+TGG | + | chr4_3:20422091-20422110 | Msa0633970:CDS | 45.0% |
| ! | TTGGGTTGTGCTCTTCGTAT+GGG | + | chr4_3:20422092-20422111 | Msa0633970:CDS | 45.0% |
| GAGTGACGAGCAAGTATAAC+TGG | - | chr4_3:20422126-20422145 | None:intergenic | 45.0% | |
| GTGTCGGATAATAGAAGCGA+TGG | + | chr4_3:20422161-20422180 | Msa0633970:CDS | 45.0% | |
| !! | GGTTGTTTTGTTGCTTCCAC+TGG | - | chr4_3:20422235-20422254 | None:intergenic | 45.0% |
| CAACTAGGTCAGCTGGATTT+GGG | - | chr4_3:20422260-20422279 | None:intergenic | 45.0% | |
| TCAACTAGGTCAGCTGGATT+TGG | - | chr4_3:20422261-20422280 | None:intergenic | 45.0% | |
| AATCCAGCTGACCTAGTTGA+AGG | + | chr4_3:20422261-20422280 | Msa0633970:CDS | 45.0% | |
| TGGCATGGCATGGGATTGAA+GGG | - | chr4_3:20421810-20421829 | None:intergenic | 50.0% | |
| ATGGCATGGCATGGGATTGA+AGG | - | chr4_3:20421811-20421830 | None:intergenic | 50.0% | |
| TAGCGAGCAGTAGATGCAGA+TGG | - | chr4_3:20421944-20421963 | None:intergenic | 50.0% | |
| !!! | TGCTGCCGCGACAACTTTTT+TGG | + | chr4_3:20422073-20422092 | Msa0633970:CDS | 50.0% |
| !!! | GCTGCCGCGACAACTTTTTT+GGG | + | chr4_3:20422074-20422093 | Msa0633970:CDS | 50.0% |
| TGGGTTGTGCTCTTCGTATG+GGG | + | chr4_3:20422093-20422112 | Msa0633970:CDS | 50.0% | |
| TAGGTCAGCTGGATTTGGGT+AGG | - | chr4_3:20422256-20422275 | None:intergenic | 50.0% | |
| CTACCTTCAACTAGGTCAGC+TGG | - | chr4_3:20422267-20422286 | None:intergenic | 50.0% | |
| TGGCATGGCATGGGATTGAA+GGG | - | chr4_3:20421810-20421829 | None:intergenic | 50.0% | |
| ATGGCATGGCATGGGATTGA+AGG | - | chr4_3:20421811-20421830 | None:intergenic | 50.0% | |
| TAGCGAGCAGTAGATGCAGA+TGG | - | chr4_3:20421944-20421963 | None:intergenic | 50.0% | |
| !!! | TGCTGCCGCGACAACTTTTT+TGG | + | chr4_3:20422073-20422092 | Msa0633970:CDS | 50.0% |
| !!! | GCTGCCGCGACAACTTTTTT+GGG | + | chr4_3:20422074-20422093 | Msa0633970:CDS | 50.0% |
| TGGGTTGTGCTCTTCGTATG+GGG | + | chr4_3:20422093-20422112 | Msa0633970:CDS | 50.0% | |
| TAGGTCAGCTGGATTTGGGT+AGG | - | chr4_3:20422256-20422275 | None:intergenic | 50.0% | |
| CTACCTTCAACTAGGTCAGC+TGG | - | chr4_3:20422267-20422286 | None:intergenic | 50.0% | |
| CGGCAGCAAGATGGAGAGAA+GGG | - | chr4_3:20422061-20422080 | None:intergenic | 55.0% | |
| AAGTTGTCGCGGCAGCAAGA+TGG | - | chr4_3:20422070-20422089 | None:intergenic | 55.0% | |
| CGGCAGCAAGATGGAGAGAA+GGG | - | chr4_3:20422061-20422080 | None:intergenic | 55.0% | |
| AAGTTGTCGCGGCAGCAAGA+TGG | - | chr4_3:20422070-20422089 | None:intergenic | 55.0% | |
| GCGGCAGCAAGATGGAGAGA+AGG | - | chr4_3:20422062-20422081 | None:intergenic | 60.0% | |
| GCGGCAGCAAGATGGAGAGA+AGG | - | chr4_3:20422062-20422081 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 20421105 | 20422293 | 20421105 | ID=Msa0633970;Name=Msa0633970 |
| chr4_3 | mRNA | 20421105 | 20422293 | 20421105 | ID=Msa0633970-mRNA-1;Parent=Msa0633970;Name=Msa0633970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|232 |
| chr4_3 | exon | 20421105 | 20421283 | 20421105 | ID=Msa0633970-mRNA-1:exon:5429;Parent=Msa0633970-mRNA-1 |
| chr4_3 | exon | 20421774 | 20422293 | 20421774 | ID=Msa0633970-mRNA-1:exon:5430;Parent=Msa0633970-mRNA-1 |
| chr4_3 | CDS | 20421105 | 20421283 | 20421105 | ID=Msa0633970-mRNA-1:cds;Parent=Msa0633970-mRNA-1 |
| chr4_3 | CDS | 20421774 | 20422293 | 20421774 | ID=Msa0633970-mRNA-1:cds;Parent=Msa0633970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
