Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0633940 | KEH29169.1 | 95.259 | 232 | 11 | 0 | 1 | 232 | 1 | 232 | 7.05e-153 | 434 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0010150 | Msa0633940 | 0.806951 | 6.409574e-50 | -8.615850e-47 |
Msa0014590 | Msa0633940 | 0.808939 | 2.420483e-50 | -8.615850e-47 |
Msa0024650 | Msa0633940 | 0.813624 | 2.329569e-51 | -8.615850e-47 |
Msa0040210 | Msa0633940 | 0.811398 | 7.141123e-51 | -8.615850e-47 |
Msa0059880 | Msa0633940 | 0.811488 | 6.826471e-51 | -8.615850e-47 |
Msa0073110 | Msa0633940 | 0.806562 | 7.746142e-50 | -8.615850e-47 |
Msa0074620 | Msa0633940 | 0.834001 | 3.856563e-56 | -8.615850e-47 |
Msa0087900 | Msa0633940 | 0.814820 | 1.268239e-51 | -8.615850e-47 |
Msa0095910 | Msa0633940 | 0.809895 | 1.509301e-50 | -8.615850e-47 |
Msa0604280 | Msa0633940 | 0.814314 | 1.640866e-51 | -8.615850e-47 |
Msa0616300 | Msa0633940 | 0.812586 | 3.935923e-51 | -8.615850e-47 |
Msa0628200 | Msa0633940 | 0.801537 | 8.590973e-49 | -8.615850e-47 |
Msa0631700 | Msa0633940 | 0.809880 | 1.520485e-50 | -8.615850e-47 |
Msa0633940 | Msa0633970 | 0.995022 | 2.667733e-212 | -8.615850e-47 |
Msa0633940 | Msa0634290 | 0.821531 | 3.843725e-53 | -8.615850e-47 |
Msa0633940 | Msa0639400 | 0.807479 | 4.954285e-50 | -8.615850e-47 |
Msa0633940 | Msa0639410 | 0.813573 | 2.390231e-51 | -8.615850e-47 |
Msa0633940 | Msa0643190 | 0.818164 | 2.261021e-52 | -8.615850e-47 |
Msa0633940 | Msa0668220 | 0.811564 | 6.572985e-51 | -8.615850e-47 |
Msa0633940 | Msa0671640 | 0.800529 | 1.380683e-48 | -8.615850e-47 |
Msa0633940 | Msa0682420 | 0.801834 | 7.468630e-49 | -8.615850e-47 |
Msa0633940 | Msa0685080 | 0.828406 | 9.153349e-55 | -8.615850e-47 |
Msa0633940 | Msa0715220 | 0.826065 | 3.328513e-54 | -8.615850e-47 |
Msa0633940 | Msa0727480 | 0.802325 | 5.917634e-49 | -8.615850e-47 |
Msa0633940 | Msa0741360 | 0.875685 | 2.536601e-68 | -8.615850e-47 |
Msa0633940 | Msa0751960 | 0.818506 | 1.891508e-52 | -8.615850e-47 |
Msa0633940 | Msa0757120 | 0.806887 | 6.612371e-50 | -8.615850e-47 |
Msa0633940 | Msa0768670 | 0.814473 | 1.513516e-51 | -8.615850e-47 |
Msa0633940 | Msa0777070 | 0.830156 | 3.441907e-55 | -8.615850e-47 |
Msa0633940 | Msa0783120 | 0.807603 | 4.662086e-50 | -8.615850e-47 |
Msa0633940 | Msa0798150 | 0.814167 | 1.768235e-51 | -8.615850e-47 |
Msa0633940 | Msa0814160 | 0.819173 | 1.334713e-52 | -8.615850e-47 |
Msa0633940 | Msa0814230 | 0.801579 | 8.423705e-49 | -8.615850e-47 |
Msa0633940 | Msa0822400 | 0.840569 | 8.034771e-58 | -8.615850e-47 |
Msa0633940 | Msa0822410 | 0.803088 | 4.118727e-49 | -8.615850e-47 |
Msa0633940 | Msa0854840 | 0.827496 | 1.515231e-54 | -8.615850e-47 |
Msa0633940 | Msa0861730 | 0.829568 | 4.787067e-55 | -8.615850e-47 |
Msa0633940 | Msa0895420 | 0.816789 | 4.613096e-52 | -8.615850e-47 |
Msa0633940 | Msa0896910 | 0.816235 | 6.140768e-52 | -8.615850e-47 |
Msa0633940 | Msa0896920 | 0.861900 | 7.412368e-64 | -8.615850e-47 |
Msa0633940 | Msa0896950 | 0.835510 | 1.609175e-56 | -8.615850e-47 |
Msa0633940 | Msa0898970 | 0.816982 | 4.175572e-52 | -8.615850e-47 |
Msa0633940 | Msa0913550 | 0.814620 | 1.404254e-51 | -8.615850e-47 |
Msa0633940 | Msa0916290 | 0.827755 | 1.313331e-54 | -8.615850e-47 |
Msa0633940 | Msa0920760 | 0.801206 | 1.004636e-48 | -8.615850e-47 |
Msa0633940 | Msa0932900 | 0.802272 | 6.068372e-49 | -8.615850e-47 |
Msa0633940 | Msa0932930 | 0.802579 | 5.248019e-49 | -8.615850e-47 |
Msa0633940 | Msa0933590 | 0.816657 | 4.939288e-52 | -8.615850e-47 |
Msa0633940 | Msa0933610 | 0.823204 | 1.570880e-53 | -8.615850e-47 |
Msa0633940 | Msa0941120 | 0.825493 | 4.550036e-54 | -8.615850e-47 |
Msa0633940 | Msa0946010 | 0.848504 | 5.874873e-60 | -8.615850e-47 |
Msa0633940 | Msa0951150 | 0.800081 | 1.703511e-48 | -8.615850e-47 |
Msa0633940 | Msa0964510 | 0.819312 | 1.240572e-52 | -8.615850e-47 |
Msa0633940 | Msa0970790 | 0.804003 | 2.661578e-49 | -8.615850e-47 |
Msa0633940 | Msa0987640 | 0.837908 | 3.936327e-57 | -8.615850e-47 |
Msa0633940 | Msa0993700 | 0.809742 | 1.627795e-50 | -8.615850e-47 |
Msa0633940 | Msa0995110 | 0.832485 | 9.201939e-56 | -8.615850e-47 |
Msa0633940 | Msa0995610 | 0.809633 | 1.718097e-50 | -8.615850e-47 |
Msa0633940 | Msa0995620 | 0.821417 | 4.082911e-53 | -8.615850e-47 |
Msa0633940 | Msa0995630 | 0.816261 | 6.058368e-52 | -8.615850e-47 |
Msa0633940 | Msa0996980 | 0.826277 | 2.963362e-54 | -8.615850e-47 |
Msa0633940 | Msa0998780 | 0.820421 | 6.921364e-53 | -8.615850e-47 |
Msa0633940 | Msa1006030 | 0.844374 | 7.865965e-59 | -8.615850e-47 |
Msa0633940 | Msa1006170 | 0.859938 | 2.924045e-63 | -8.615850e-47 |
Msa0633940 | Msa1018590 | 0.847527 | 1.093140e-59 | -8.615850e-47 |
Msa0633940 | Msa1022490 | 0.821743 | 3.432212e-53 | -8.615850e-47 |
Msa0633940 | Msa1022510 | 0.834486 | 2.915707e-56 | -8.615850e-47 |
Msa0633940 | Msa1024350 | 0.835467 | 1.649580e-56 | -8.615850e-47 |
Msa0633940 | Msa1024480 | 0.801169 | 1.021989e-48 | -8.615850e-47 |
Msa0633940 | Msa1026050 | 0.819054 | 1.420721e-52 | -8.615850e-47 |
Msa0633940 | Msa1041910 | 0.809052 | 2.289286e-50 | -8.615850e-47 |
Msa0633940 | Msa1048350 | 0.809941 | 1.475485e-50 | -8.615850e-47 |
Msa0633940 | Msa1048390 | 0.816490 | 5.382334e-52 | -8.615850e-47 |
Msa0633940 | Msa1048400 | 0.804018 | 2.642404e-49 | -8.615850e-47 |
Msa0633940 | Msa1061670 | 0.836958 | 6.894311e-57 | -8.615850e-47 |
Msa0633940 | Msa1064940 | 0.828405 | 9.157778e-55 | -8.615850e-47 |
Msa0633940 | Msa1087370 | 0.809295 | 2.030293e-50 | -8.615850e-47 |
Msa0633940 | Msa1087380 | 0.810126 | 1.345771e-50 | -8.615850e-47 |
Msa0633940 | Msa1100330 | 0.810773 | 9.757774e-51 | -8.615850e-47 |
Msa0633940 | Msa1104960 | 0.815660 | 8.250561e-52 | -8.615850e-47 |
Msa0633940 | Msa1106680 | 0.838117 | 3.478176e-57 | -8.615850e-47 |
Msa0633940 | Msa1106960 | 0.834730 | 2.530765e-56 | -8.615850e-47 |
Msa0633940 | Msa1108560 | 0.806967 | 6.358512e-50 | -8.615850e-47 |
Msa0633940 | Msa1138110 | 0.806943 | 6.433903e-50 | -8.615850e-47 |
Msa0633940 | Msa1147030 | 0.861012 | 1.382937e-63 | -8.615850e-47 |
Msa0633940 | Msa1148200 | 0.803256 | 3.802899e-49 | -8.615850e-47 |
Msa0633940 | Msa1148210 | 0.840598 | 7.895345e-58 | -8.615850e-47 |
Msa0633940 | Msa1152180 | 0.802208 | 6.256010e-49 | -8.615850e-47 |
Msa0633940 | Msa1167960 | 0.823370 | 1.436498e-53 | -8.615850e-47 |
Msa0633940 | Msa1170340 | 0.826100 | 3.264828e-54 | -8.615850e-47 |
Msa0633940 | Msa1181090 | 0.820855 | 5.500874e-53 | -8.615850e-47 |
Msa0633940 | Msa1197910 | 0.808266 | 3.370519e-50 | -8.615850e-47 |
Msa0633940 | Msa1231720 | 0.851952 | 6.346445e-61 | -8.615850e-47 |
Msa0633940 | Msa1236680 | 0.831277 | 1.829036e-55 | -8.615850e-47 |
Msa0633940 | Msa1263110 | 0.802846 | 4.620743e-49 | -8.615850e-47 |
Msa0633940 | Msa1267990 | 0.802996 | 4.304017e-49 | -8.615850e-47 |
Msa0633940 | Msa1294020 | 0.843019 | 1.811851e-58 | -8.615850e-47 |
Msa0633940 | Msa1298090 | 0.803082 | 4.129871e-49 | -8.615850e-47 |
Msa0633940 | Msa1319010 | 0.831191 | 1.920088e-55 | -8.615850e-47 |
Msa0633940 | Msa1319030 | 0.800796 | 1.218371e-48 | -8.615850e-47 |
Msa0633940 | Msa1319190 | 0.801399 | 9.172497e-49 | -8.615850e-47 |
Msa0633940 | Msa1321970 | 0.805403 | 1.357769e-49 | -8.615850e-47 |
Msa0633940 | Msa1322500 | 0.802701 | 4.951634e-49 | -8.615850e-47 |
Msa0633940 | Msa1350870 | 0.814441 | 1.538589e-51 | -8.615850e-47 |
Msa0633940 | Msa1355340 | 0.839611 | 1.428852e-57 | -8.615850e-47 |
Msa0633940 | Msa1357840 | 0.803928 | 2.758295e-49 | -8.615850e-47 |
Msa0633940 | Msa1406840 | 0.824480 | 7.891536e-54 | -8.615850e-47 |
Msa0633940 | Msa1411550 | 0.844450 | 7.504318e-59 | -8.615850e-47 |
Msa0633940 | Msa1421130 | 0.800943 | 1.136990e-48 | -8.615850e-47 |
Msa0633940 | Msa1431160 | 0.800348 | 1.503183e-48 | -8.615850e-47 |
Msa0633940 | Msa1445900 | 0.819736 | 9.932885e-53 | -8.615850e-47 |
Msa0633940 | Msa1453650 | 0.802011 | 6.867149e-49 | -8.615850e-47 |
Msa0633940 | Msa1456600 | 0.813850 | 2.077441e-51 | -8.615850e-47 |
Msa0633940 | Msa1458270 | 0.810671 | 1.026560e-50 | -8.615850e-47 |
Msa0633940 | Msa1459610 | 0.847136 | 1.399309e-59 | -8.615850e-47 |
Msa0134570 | Msa0633940 | 0.812394 | 4.333447e-51 | -8.615850e-47 |
Msa0150910 | Msa0633940 | 0.804272 | 2.339485e-49 | -8.615850e-47 |
Msa0150920 | Msa0633940 | 0.819152 | 1.349234e-52 | -8.615850e-47 |
Msa0154460 | Msa0633940 | 0.803429 | 3.500284e-49 | -8.615850e-47 |
Msa0163340 | Msa0633940 | 0.813496 | 2.485985e-51 | -8.615850e-47 |
Msa0163690 | Msa0633940 | 0.800740 | 1.250412e-48 | -8.615850e-47 |
Msa0170990 | Msa0633940 | 0.828126 | 1.069252e-54 | -8.615850e-47 |
Msa0190670 | Msa0633940 | 0.811538 | 6.660152e-51 | -8.615850e-47 |
Msa0190890 | Msa0633940 | 0.804593 | 2.005638e-49 | -8.615850e-47 |
Msa0194230 | Msa0633940 | 0.802313 | 5.952973e-49 | -8.615850e-47 |
Msa0207640 | Msa0633940 | 0.801820 | 7.518549e-49 | -8.615850e-47 |
Msa0209060 | Msa0633940 | 0.841013 | 6.147744e-58 | -8.615850e-47 |
Msa0212550 | Msa0633940 | 0.822182 | 2.716591e-53 | -8.615850e-47 |
Msa0220090 | Msa0633940 | 0.805838 | 1.100171e-49 | -8.615850e-47 |
Msa0366510 | Msa0633940 | 0.855944 | 4.489172e-62 | -8.615850e-47 |
Msa0374040 | Msa0633940 | 0.835345 | 1.771453e-56 | -8.615850e-47 |
Msa0391270 | Msa0633940 | 0.802194 | 6.297298e-49 | -8.615850e-47 |
Msa0396700 | Msa0633940 | 0.811896 | 5.564983e-51 | -8.615850e-47 |
Msa0396790 | Msa0633940 | 0.802258 | 6.109371e-49 | -8.615850e-47 |
Msa0409530 | Msa0633940 | 0.801169 | 1.022293e-48 | -8.615850e-47 |
Msa0414480 | Msa0633940 | 0.835527 | 1.593085e-56 | -8.615850e-47 |
Msa0418160 | Msa0633940 | 0.840301 | 9.442630e-58 | -8.615850e-47 |
Msa0436810 | Msa0633940 | 0.800122 | 1.671316e-48 | -8.615850e-47 |
Msa0444400 | Msa0633940 | 0.809653 | 1.701471e-50 | -8.615850e-47 |
Msa0454160 | Msa0633940 | 0.805314 | 1.417417e-49 | -8.615850e-47 |
Msa0454770 | Msa0633940 | 0.804256 | 2.357266e-49 | -8.615850e-47 |
Msa0459300 | Msa0633940 | 0.811544 | 6.639982e-51 | -8.615850e-47 |
Msa0464300 | Msa0633940 | 0.804608 | 1.990993e-49 | -8.615850e-47 |
Msa0464310 | Msa0633940 | 0.843463 | 1.379852e-58 | -8.615850e-47 |
Msa0242830 | Msa0633940 | 0.803252 | 3.808714e-49 | -8.615850e-47 |
Msa0252930 | Msa0633940 | 0.809931 | 1.482855e-50 | -8.615850e-47 |
Msa0272210 | Msa0633940 | 0.806207 | 9.203125e-50 | -8.615850e-47 |
Msa0274250 | Msa0633940 | 0.819754 | 9.835136e-53 | -8.615850e-47 |
Msa0274260 | Msa0633940 | 0.810690 | 1.016642e-50 | -8.615850e-47 |
Msa0278460 | Msa0633940 | 0.806367 | 8.514148e-50 | -8.615850e-47 |
Msa0278950 | Msa0633940 | 0.807812 | 4.210329e-50 | -8.615850e-47 |
Msa0281190 | Msa0633940 | 0.809392 | 1.935767e-50 | -8.615850e-47 |
Msa0288540 | Msa0633940 | 0.840751 | 7.199096e-58 | -8.615850e-47 |
Msa0326770 | Msa0633940 | 0.839069 | 1.975805e-57 | -8.615850e-47 |
Msa0361700 | Msa0633940 | 0.800664 | 1.296109e-48 | -8.615850e-47 |
Msa0490060 | Msa0633940 | 0.822702 | 2.056175e-53 | -8.615850e-47 |
Msa0491800 | Msa0633940 | 0.804598 | 2.000590e-49 | -8.615850e-47 |
Msa0491950 | Msa0633940 | 0.801518 | 8.669392e-49 | -8.615850e-47 |
Msa0507600 | Msa0633940 | 0.802359 | 5.824494e-49 | -8.615850e-47 |
Msa0515130 | Msa0633940 | 0.839524 | 1.504827e-57 | -8.615850e-47 |
Msa0515150 | Msa0633940 | 0.825272 | 5.131325e-54 | -8.615850e-47 |
Msa0535570 | Msa0633940 | 0.820717 | 5.917091e-53 | -8.615850e-47 |
Msa0538440 | Msa0633940 | 0.830157 | 3.439561e-55 | -8.615850e-47 |
Msa0538450 | Msa0633940 | 0.804635 | 1.965274e-49 | -8.615850e-47 |
Msa0538520 | Msa0633940 | 0.804054 | 2.597420e-49 | -8.615850e-47 |
Msa0538530 | Msa0633940 | 0.821441 | 4.031149e-53 | -8.615850e-47 |
Msa0543740 | Msa0633940 | 0.812828 | 3.482973e-51 | -8.615850e-47 |
Msa0546760 | Msa0633940 | 0.802393 | 5.730562e-49 | -8.615850e-47 |
Msa0548790 | Msa0633940 | 0.805932 | 1.051219e-49 | -8.615850e-47 |
Msa0554660 | Msa0633940 | 0.826416 | 2.745792e-54 | -8.615850e-47 |
Msa0589740 | Msa0633940 | 0.810930 | 9.022011e-51 | -8.615850e-47 |
Msa0591490 | Msa0633940 | 0.830334 | 3.113126e-55 | -8.615850e-47 |
Msa0593870 | Msa0633940 | 0.995387 | 9.215966e-216 | -8.615850e-47 |
Msa0594330 | Msa0633940 | 0.820298 | 7.386544e-53 | -8.615850e-47 |
Msa0594630 | Msa0633940 | 0.829094 | 6.237313e-55 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0633940 | MtrunA17_Chr4g0012571 | 94.372 | 231 | 13 | 0 | 1 | 231 | 1 | 231 | 5.75e-155 | 429 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 46 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCTTTGCCCTTCTTCTCTT+TGG | 0.204053 | 4_3:+20401029 | Msa0633940:CDS |
TCAACTAGGTCAGCTGGATT+TGG | 0.237066 | 4_3:-20401269 | None:intergenic |
TGACCATATTGTATTGGATT+TGG | 0.293386 | 4_3:+20400131 | Msa0633940:CDS |
TCGTCACTCGCTTAAAGTTT+TGG | 0.323243 | 4_3:+20401148 | Msa0633940:CDS |
TAGATTACCAACTACTTTGA+AGG | 0.357772 | 4_3:+20400782 | Msa0633940:intron |
TCTCTTTGGAATACTTTCTT+CGG | 0.374925 | 4_3:+20401043 | Msa0633940:CDS |
CTTCCAAATCCAATACAATA+TGG | 0.375006 | 4_3:-20400134 | None:intergenic |
CAACTAGGTCAGCTGGATTT+GGG | 0.375194 | 4_3:-20401268 | None:intergenic |
TGCATCTACTGCTCGCTAAT+CGG | 0.377217 | 4_3:+20400957 | Msa0633940:CDS |
TTCTAATTCTGCATACTGAT+AGG | 0.378805 | 4_3:-20400182 | None:intergenic |
TTTGGGTTGTGCTCTTCGTA+TGG | 0.396092 | 4_3:+20401102 | Msa0633940:CDS |
TTGGGTTGTGCTCTTCGTAT+GGG | 0.402906 | 4_3:+20401103 | Msa0633940:CDS |
AAAGTATTCCAAAGAGAAGA+AGG | 0.428632 | 4_3:-20401037 | None:intergenic |
GGTGTTGATATTCAATACTA+AGG | 0.429220 | 4_3:+20401214 | Msa0633940:CDS |
TCTTGATCCTTCAAAGTAGT+TGG | 0.429294 | 4_3:-20400789 | None:intergenic |
GAGTGACGAGCAAGTATAAC+TGG | 0.443034 | 4_3:-20401134 | None:intergenic |
ATGGCATGGCATGGGATTGA+AGG | 0.461512 | 4_3:-20400819 | None:intergenic |
CTACCTTCAACTAGGTCAGC+TGG | 0.475286 | 4_3:-20401275 | None:intergenic |
AATCCAGCTGACCTAGTTGA+AGG | 0.483463 | 4_3:+20401272 | Msa0633940:CDS |
TTTCTTGACACAATACTCAT+TGG | 0.492166 | 4_3:+20400849 | Msa0633940:CDS |
GGAAGAACATGAAGATGTAA+AGG | 0.495227 | 4_3:+20400152 | Msa0633940:CDS |
ATGAACTTTGTGATCATCAA+AGG | 0.497786 | 4_3:-20400910 | None:intergenic |
AACACAAAGATGGCATGGCA+TGG | 0.520422 | 4_3:-20400828 | None:intergenic |
GTGTAATGACCATATTGTAT+TGG | 0.548354 | 4_3:+20400125 | Msa0633940:CDS |
ACACAAAGATGGCATGGCAT+GGG | 0.550895 | 4_3:-20400827 | None:intergenic |
CGGCAGCAAGATGGAGAGAA+GGG | 0.553496 | 4_3:-20401069 | None:intergenic |
TGGGTTGTGCTCTTCGTATG+GGG | 0.556531 | 4_3:+20401104 | Msa0633940:CDS |
AAGTTGTCGCGGCAGCAAGA+TGG | 0.558737 | 4_3:-20401078 | None:intergenic |
TGAACTTTGTGATCATCAAA+GGG | 0.562970 | 4_3:-20400909 | None:intergenic |
GATGCAGATGGATGTCAAGA+AGG | 0.564412 | 4_3:-20400940 | None:intergenic |
ATTAAGATCTACCTTCAACT+AGG | 0.573127 | 4_3:-20401283 | None:intergenic |
TGGCATGGCATGGGATTGAA+GGG | 0.575309 | 4_3:-20400818 | None:intergenic |
TAGGTCAGCTGGATTTGGGT+AGG | 0.578541 | 4_3:-20401264 | None:intergenic |
TGTGTCAAGAAACACAAAGA+TGG | 0.584873 | 4_3:-20400838 | None:intergenic |
CTTGATTATAGTATTTCACA+CGG | 0.587536 | 4_3:-20400269 | None:intergenic |
CAAGAAACACAAAGATGGCA+TGG | 0.592259 | 4_3:-20400833 | None:intergenic |
GCGGCAGCAAGATGGAGAGA+AGG | 0.593311 | 4_3:-20401070 | None:intergenic |
AAGTATTCCAAAGAGAAGAA+GGG | 0.599617 | 4_3:-20401036 | None:intergenic |
GTGTCGGATAATAGAAGCGA+TGG | 0.602232 | 4_3:+20401172 | Msa0633940:CDS |
TAGCGAGCAGTAGATGCAGA+TGG | 0.605364 | 4_3:-20400952 | None:intergenic |
TGAAATACTATAATCAAGCA+AGG | 0.609382 | 4_3:+20400274 | Msa0633940:CDS |
GGTAGTAAAGATTACTACCA+TGG | 0.620964 | 4_3:+20401193 | Msa0633940:CDS |
AATACTAAGGATTCAGCCAG+TGG | 0.626440 | 4_3:+20401227 | Msa0633940:CDS |
AAGATCTACACGAAGACTCG+TGG | 0.646014 | 4_3:+20400984 | Msa0633940:CDS |
TTGATTATAGTATTTCACAC+GGG | 0.658993 | 4_3:-20400268 | None:intergenic |
AGTATTGAATATCAACACCA+TGG | 0.687774 | 4_3:-20401210 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATATTAATTTAATAGTAC+TGG | + | chr4_3:20400557-20400576 | Msa0633940:intron | 10.0% |
!! | CAATTAAAATAAATAAAAGA+GGG | - | chr4_3:20400626-20400645 | None:intergenic | 10.0% |
!!! | CTCTTTTATTTATTTTAATT+GGG | + | chr4_3:20400625-20400644 | Msa0633940:intron | 10.0% |
!!! | ATATGTTTTATATATCTAAT+CGG | + | chr4_3:20400753-20400772 | Msa0633940:intron | 10.0% |
!! | ATATATTAATTTAATAGTAC+TGG | + | chr4_3:20400557-20400576 | Msa0633940:intron | 10.0% |
!! | CAATTAAAATAAATAAAAGA+GGG | - | chr4_3:20400626-20400645 | None:intergenic | 10.0% |
!!! | CTCTTTTATTTATTTTAATT+GGG | + | chr4_3:20400625-20400644 | Msa0633940:intron | 10.0% |
!!! | ATATGTTTTATATATCTAAT+CGG | + | chr4_3:20400753-20400772 | Msa0633940:intron | 10.0% |
!!! | TATTATTTTGTTTTTTTGAC+TGG | + | chr4_3:20400341-20400360 | Msa0633940:intron | 15.0% |
!!! | TTTTTATGATACTTTGTTTA+CGG | - | chr4_3:20400465-20400484 | None:intergenic | 15.0% |
!!! | TAGCCTTATTTAAATATTTT+GGG | - | chr4_3:20400515-20400534 | None:intergenic | 15.0% |
!! | CCAATTAAAATAAATAAAAG+AGG | - | chr4_3:20400627-20400646 | None:intergenic | 15.0% |
!!! | CCTCTTTTATTTATTTTAAT+TGG | + | chr4_3:20400624-20400643 | Msa0633940:intron | 15.0% |
!!! | TATTTTTGTTTATTATGGTT+TGG | + | chr4_3:20400675-20400694 | Msa0633940:intron | 15.0% |
!! | CATTGTCAAAAAAAAAATTA+GGG | - | chr4_3:20400719-20400738 | None:intergenic | 15.0% |
!! | ACATTGTCAAAAAAAAAATT+AGG | - | chr4_3:20400720-20400739 | None:intergenic | 15.0% |
!!! | TATTATTTTGTTTTTTTGAC+TGG | + | chr4_3:20400341-20400360 | Msa0633940:intron | 15.0% |
!!! | TTTTTATGATACTTTGTTTA+CGG | - | chr4_3:20400465-20400484 | None:intergenic | 15.0% |
!!! | TAGCCTTATTTAAATATTTT+GGG | - | chr4_3:20400515-20400534 | None:intergenic | 15.0% |
!! | CCAATTAAAATAAATAAAAG+AGG | - | chr4_3:20400627-20400646 | None:intergenic | 15.0% |
!!! | CCTCTTTTATTTATTTTAAT+TGG | + | chr4_3:20400624-20400643 | Msa0633940:intron | 15.0% |
!!! | TATTTTTGTTTATTATGGTT+TGG | + | chr4_3:20400675-20400694 | Msa0633940:intron | 15.0% |
!! | CATTGTCAAAAAAAAAATTA+GGG | - | chr4_3:20400719-20400738 | None:intergenic | 15.0% |
!! | ACATTGTCAAAAAAAAAATT+AGG | - | chr4_3:20400720-20400739 | None:intergenic | 15.0% |
!! | TAATTACTCTTTCCATTATA+TGG | + | chr4_3:20400300-20400319 | Msa0633940:intron | 20.0% |
!!! | AGAACTTTTAAACCATATAA+TGG | - | chr4_3:20400315-20400334 | None:intergenic | 20.0% |
!! | GTGAAGAATCATATAAAATA+GGG | - | chr4_3:20400488-20400507 | None:intergenic | 20.0% |
!! | AGTGAAGAATCATATAAAAT+AGG | - | chr4_3:20400489-20400508 | None:intergenic | 20.0% |
!! | GAACCCAAAATATTTAAATA+AGG | + | chr4_3:20400509-20400528 | Msa0633940:intron | 20.0% |
!!! | CTAGCCTTATTTAAATATTT+TGG | - | chr4_3:20400516-20400535 | None:intergenic | 20.0% |
!!! | GCACATATTTTTGTTTATTA+TGG | + | chr4_3:20400670-20400689 | Msa0633940:intron | 20.0% |
!!! | TTTTGACAATGTTTTATGTA+TGG | + | chr4_3:20400728-20400747 | Msa0633940:intron | 20.0% |
!! | TAATTACTCTTTCCATTATA+TGG | + | chr4_3:20400300-20400319 | Msa0633940:intron | 20.0% |
!!! | AGAACTTTTAAACCATATAA+TGG | - | chr4_3:20400315-20400334 | None:intergenic | 20.0% |
!! | GTGAAGAATCATATAAAATA+GGG | - | chr4_3:20400488-20400507 | None:intergenic | 20.0% |
!! | AGTGAAGAATCATATAAAAT+AGG | - | chr4_3:20400489-20400508 | None:intergenic | 20.0% |
!! | GAACCCAAAATATTTAAATA+AGG | + | chr4_3:20400509-20400528 | Msa0633940:intron | 20.0% |
!!! | CTAGCCTTATTTAAATATTT+TGG | - | chr4_3:20400516-20400535 | None:intergenic | 20.0% |
!!! | GCACATATTTTTGTTTATTA+TGG | + | chr4_3:20400670-20400689 | Msa0633940:intron | 20.0% |
!!! | TTTTGACAATGTTTTATGTA+TGG | + | chr4_3:20400728-20400747 | Msa0633940:intron | 20.0% |
! | TAGAAAAAGAAGACTTAAAG+TGG | + | chr4_3:20400200-20400219 | Msa0633940:CDS | 25.0% |
!! | TCACTAACTTCAATTTTCTT+TGG | - | chr4_3:20400239-20400258 | None:intergenic | 25.0% |
! | TTGATTATAGTATTTCACAC+GGG | - | chr4_3:20400271-20400290 | None:intergenic | 25.0% |
! | CTTGATTATAGTATTTCACA+CGG | - | chr4_3:20400272-20400291 | None:intergenic | 25.0% |
! | TGAAATACTATAATCAAGCA+AGG | + | chr4_3:20400274-20400293 | Msa0633940:CDS | 25.0% |
! | TACGGATTTGATTAAACATA+AGG | - | chr4_3:20400447-20400466 | None:intergenic | 25.0% |
! | AAAAGAGGGTAGTTAATAAA+AGG | - | chr4_3:20400612-20400631 | None:intergenic | 25.0% |
!!! | CAAAGCTAAGAATTTTTTCT+TGG | - | chr4_3:20401016-20401035 | None:intergenic | 25.0% |
! | TAGAAAAAGAAGACTTAAAG+TGG | + | chr4_3:20400200-20400219 | Msa0633940:CDS | 25.0% |
!! | TCACTAACTTCAATTTTCTT+TGG | - | chr4_3:20400239-20400258 | None:intergenic | 25.0% |
! | TTGATTATAGTATTTCACAC+GGG | - | chr4_3:20400271-20400290 | None:intergenic | 25.0% |
! | CTTGATTATAGTATTTCACA+CGG | - | chr4_3:20400272-20400291 | None:intergenic | 25.0% |
! | TGAAATACTATAATCAAGCA+AGG | + | chr4_3:20400274-20400293 | Msa0633940:CDS | 25.0% |
! | TACGGATTTGATTAAACATA+AGG | - | chr4_3:20400447-20400466 | None:intergenic | 25.0% |
! | AAAAGAGGGTAGTTAATAAA+AGG | - | chr4_3:20400612-20400631 | None:intergenic | 25.0% |
!!! | CAAAGCTAAGAATTTTTTCT+TGG | - | chr4_3:20401016-20401035 | None:intergenic | 25.0% |
GTGTAATGACCATATTGTAT+TGG | + | chr4_3:20400125-20400144 | Msa0633940:CDS | 30.0% | |
TGACCATATTGTATTGGATT+TGG | + | chr4_3:20400131-20400150 | Msa0633940:CDS | 30.0% | |
CTTCCAAATCCAATACAATA+TGG | - | chr4_3:20400137-20400156 | None:intergenic | 30.0% | |
TTCTAATTCTGCATACTGAT+AGG | - | chr4_3:20400185-20400204 | None:intergenic | 30.0% | |
!! | TTTTCTTTGGTTTACTCTCA+TGG | - | chr4_3:20400226-20400245 | None:intergenic | 30.0% |
TAGATTACCAACTACTTTGA+AGG | + | chr4_3:20400782-20400801 | Msa0633940:intron | 30.0% | |
TTTCTTGACACAATACTCAT+TGG | + | chr4_3:20400849-20400868 | Msa0633940:CDS | 30.0% | |
TGAACTTTGTGATCATCAAA+GGG | - | chr4_3:20400912-20400931 | None:intergenic | 30.0% | |
ATGAACTTTGTGATCATCAA+AGG | - | chr4_3:20400913-20400932 | None:intergenic | 30.0% | |
!!! | AGCTAAGAATTTTTTCTTGG+TGG | - | chr4_3:20401013-20401032 | None:intergenic | 30.0% |
AAGTATTCCAAAGAGAAGAA+GGG | - | chr4_3:20401039-20401058 | None:intergenic | 30.0% | |
! | AAAGTATTCCAAAGAGAAGA+AGG | - | chr4_3:20401040-20401059 | None:intergenic | 30.0% |
!! | TCTCTTTGGAATACTTTCTT+CGG | + | chr4_3:20401043-20401062 | Msa0633940:CDS | 30.0% |
! | AGTATTGAATATCAACACCA+TGG | - | chr4_3:20401213-20401232 | None:intergenic | 30.0% |
!! | GGTGTTGATATTCAATACTA+AGG | + | chr4_3:20401214-20401233 | Msa0633940:CDS | 30.0% |
GTGTAATGACCATATTGTAT+TGG | + | chr4_3:20400125-20400144 | Msa0633940:CDS | 30.0% | |
TGACCATATTGTATTGGATT+TGG | + | chr4_3:20400131-20400150 | Msa0633940:CDS | 30.0% | |
CTTCCAAATCCAATACAATA+TGG | - | chr4_3:20400137-20400156 | None:intergenic | 30.0% | |
TTCTAATTCTGCATACTGAT+AGG | - | chr4_3:20400185-20400204 | None:intergenic | 30.0% | |
!! | TTTTCTTTGGTTTACTCTCA+TGG | - | chr4_3:20400226-20400245 | None:intergenic | 30.0% |
TAGATTACCAACTACTTTGA+AGG | + | chr4_3:20400782-20400801 | Msa0633940:intron | 30.0% | |
TTTCTTGACACAATACTCAT+TGG | + | chr4_3:20400849-20400868 | Msa0633940:CDS | 30.0% | |
TGAACTTTGTGATCATCAAA+GGG | - | chr4_3:20400912-20400931 | None:intergenic | 30.0% | |
ATGAACTTTGTGATCATCAA+AGG | - | chr4_3:20400913-20400932 | None:intergenic | 30.0% | |
!!! | AGCTAAGAATTTTTTCTTGG+TGG | - | chr4_3:20401013-20401032 | None:intergenic | 30.0% |
AAGTATTCCAAAGAGAAGAA+GGG | - | chr4_3:20401039-20401058 | None:intergenic | 30.0% | |
! | AAAGTATTCCAAAGAGAAGA+AGG | - | chr4_3:20401040-20401059 | None:intergenic | 30.0% |
!! | TCTCTTTGGAATACTTTCTT+CGG | + | chr4_3:20401043-20401062 | Msa0633940:CDS | 30.0% |
! | AGTATTGAATATCAACACCA+TGG | - | chr4_3:20401213-20401232 | None:intergenic | 30.0% |
!! | GGTGTTGATATTCAATACTA+AGG | + | chr4_3:20401214-20401233 | Msa0633940:CDS | 30.0% |
GGAAGAACATGAAGATGTAA+AGG | + | chr4_3:20400152-20400171 | Msa0633940:CDS | 35.0% | |
GGGTCAAATTTCTAACAACT+AGG | + | chr4_3:20400645-20400664 | Msa0633940:intron | 35.0% | |
TCTTGATCCTTCAAAGTAGT+TGG | - | chr4_3:20400792-20400811 | None:intergenic | 35.0% | |
TGTGTCAAGAAACACAAAGA+TGG | - | chr4_3:20400841-20400860 | None:intergenic | 35.0% | |
GGTAGTAAAGATTACTACCA+TGG | + | chr4_3:20401193-20401212 | Msa0633940:CDS | 35.0% | |
GGAAGAACATGAAGATGTAA+AGG | + | chr4_3:20400152-20400171 | Msa0633940:CDS | 35.0% | |
GGGTCAAATTTCTAACAACT+AGG | + | chr4_3:20400645-20400664 | Msa0633940:intron | 35.0% | |
TCTTGATCCTTCAAAGTAGT+TGG | - | chr4_3:20400792-20400811 | None:intergenic | 35.0% | |
TGTGTCAAGAAACACAAAGA+TGG | - | chr4_3:20400841-20400860 | None:intergenic | 35.0% | |
GGTAGTAAAGATTACTACCA+TGG | + | chr4_3:20401193-20401212 | Msa0633940:CDS | 35.0% | |
CAAGAAACACAAAGATGGCA+TGG | - | chr4_3:20400836-20400855 | None:intergenic | 40.0% | |
ACAACCCAAAAAAGTTGTCG+CGG | - | chr4_3:20401092-20401111 | None:intergenic | 40.0% | |
! | TCGTCACTCGCTTAAAGTTT+TGG | + | chr4_3:20401148-20401167 | Msa0633940:CDS | 40.0% |
!! | CGCTTAAAGTTTTGGTGTGT+CGG | + | chr4_3:20401156-20401175 | Msa0633940:CDS | 40.0% |
AATACTAAGGATTCAGCCAG+TGG | + | chr4_3:20401227-20401246 | Msa0633940:CDS | 40.0% | |
CAAGAAACACAAAGATGGCA+TGG | - | chr4_3:20400836-20400855 | None:intergenic | 40.0% | |
ACAACCCAAAAAAGTTGTCG+CGG | - | chr4_3:20401092-20401111 | None:intergenic | 40.0% | |
! | TCGTCACTCGCTTAAAGTTT+TGG | + | chr4_3:20401148-20401167 | Msa0633940:CDS | 40.0% |
!! | CGCTTAAAGTTTTGGTGTGT+CGG | + | chr4_3:20401156-20401175 | Msa0633940:CDS | 40.0% |
AATACTAAGGATTCAGCCAG+TGG | + | chr4_3:20401227-20401246 | Msa0633940:CDS | 40.0% | |
ACACAAAGATGGCATGGCAT+GGG | - | chr4_3:20400830-20400849 | None:intergenic | 45.0% | |
AACACAAAGATGGCATGGCA+TGG | - | chr4_3:20400831-20400850 | None:intergenic | 45.0% | |
GATGCAGATGGATGTCAAGA+AGG | - | chr4_3:20400943-20400962 | None:intergenic | 45.0% | |
TGCATCTACTGCTCGCTAAT+CGG | + | chr4_3:20400957-20400976 | Msa0633940:CDS | 45.0% | |
AAGATCTACACGAAGACTCG+TGG | + | chr4_3:20400984-20401003 | Msa0633940:CDS | 45.0% | |
AGCTTTGCCCTTCTTCTCTT+TGG | + | chr4_3:20401029-20401048 | Msa0633940:CDS | 45.0% | |
!! | TTTGGGTTGTGCTCTTCGTA+TGG | + | chr4_3:20401102-20401121 | Msa0633940:CDS | 45.0% |
! | TTGGGTTGTGCTCTTCGTAT+GGG | + | chr4_3:20401103-20401122 | Msa0633940:CDS | 45.0% |
GAGTGACGAGCAAGTATAAC+TGG | - | chr4_3:20401137-20401156 | None:intergenic | 45.0% | |
GTGTCGGATAATAGAAGCGA+TGG | + | chr4_3:20401172-20401191 | Msa0633940:CDS | 45.0% | |
!! | GGTTGTTTTGTTGCTTCCAC+TGG | - | chr4_3:20401246-20401265 | None:intergenic | 45.0% |
CAACTAGGTCAGCTGGATTT+GGG | - | chr4_3:20401271-20401290 | None:intergenic | 45.0% | |
TCAACTAGGTCAGCTGGATT+TGG | - | chr4_3:20401272-20401291 | None:intergenic | 45.0% | |
AATCCAGCTGACCTAGTTGA+AGG | + | chr4_3:20401272-20401291 | Msa0633940:CDS | 45.0% | |
ACACAAAGATGGCATGGCAT+GGG | - | chr4_3:20400830-20400849 | None:intergenic | 45.0% | |
AACACAAAGATGGCATGGCA+TGG | - | chr4_3:20400831-20400850 | None:intergenic | 45.0% | |
GATGCAGATGGATGTCAAGA+AGG | - | chr4_3:20400943-20400962 | None:intergenic | 45.0% | |
TGCATCTACTGCTCGCTAAT+CGG | + | chr4_3:20400957-20400976 | Msa0633940:CDS | 45.0% | |
AAGATCTACACGAAGACTCG+TGG | + | chr4_3:20400984-20401003 | Msa0633940:CDS | 45.0% | |
AGCTTTGCCCTTCTTCTCTT+TGG | + | chr4_3:20401029-20401048 | Msa0633940:CDS | 45.0% | |
!! | TTTGGGTTGTGCTCTTCGTA+TGG | + | chr4_3:20401102-20401121 | Msa0633940:CDS | 45.0% |
! | TTGGGTTGTGCTCTTCGTAT+GGG | + | chr4_3:20401103-20401122 | Msa0633940:CDS | 45.0% |
GAGTGACGAGCAAGTATAAC+TGG | - | chr4_3:20401137-20401156 | None:intergenic | 45.0% | |
GTGTCGGATAATAGAAGCGA+TGG | + | chr4_3:20401172-20401191 | Msa0633940:CDS | 45.0% | |
!! | GGTTGTTTTGTTGCTTCCAC+TGG | - | chr4_3:20401246-20401265 | None:intergenic | 45.0% |
CAACTAGGTCAGCTGGATTT+GGG | - | chr4_3:20401271-20401290 | None:intergenic | 45.0% | |
TCAACTAGGTCAGCTGGATT+TGG | - | chr4_3:20401272-20401291 | None:intergenic | 45.0% | |
AATCCAGCTGACCTAGTTGA+AGG | + | chr4_3:20401272-20401291 | Msa0633940:CDS | 45.0% | |
TGGCATGGCATGGGATTGAA+GGG | - | chr4_3:20400821-20400840 | None:intergenic | 50.0% | |
ATGGCATGGCATGGGATTGA+AGG | - | chr4_3:20400822-20400841 | None:intergenic | 50.0% | |
TAGCGAGCAGTAGATGCAGA+TGG | - | chr4_3:20400955-20400974 | None:intergenic | 50.0% | |
!!! | TGCTGCCGCGACAACTTTTT+TGG | + | chr4_3:20401084-20401103 | Msa0633940:CDS | 50.0% |
!!! | GCTGCCGCGACAACTTTTTT+GGG | + | chr4_3:20401085-20401104 | Msa0633940:CDS | 50.0% |
TGGGTTGTGCTCTTCGTATG+GGG | + | chr4_3:20401104-20401123 | Msa0633940:CDS | 50.0% | |
TAGGTCAGCTGGATTTGGGT+AGG | - | chr4_3:20401267-20401286 | None:intergenic | 50.0% | |
CTACCTTCAACTAGGTCAGC+TGG | - | chr4_3:20401278-20401297 | None:intergenic | 50.0% | |
TGGCATGGCATGGGATTGAA+GGG | - | chr4_3:20400821-20400840 | None:intergenic | 50.0% | |
ATGGCATGGCATGGGATTGA+AGG | - | chr4_3:20400822-20400841 | None:intergenic | 50.0% | |
TAGCGAGCAGTAGATGCAGA+TGG | - | chr4_3:20400955-20400974 | None:intergenic | 50.0% | |
!!! | TGCTGCCGCGACAACTTTTT+TGG | + | chr4_3:20401084-20401103 | Msa0633940:CDS | 50.0% |
!!! | GCTGCCGCGACAACTTTTTT+GGG | + | chr4_3:20401085-20401104 | Msa0633940:CDS | 50.0% |
TGGGTTGTGCTCTTCGTATG+GGG | + | chr4_3:20401104-20401123 | Msa0633940:CDS | 50.0% | |
TAGGTCAGCTGGATTTGGGT+AGG | - | chr4_3:20401267-20401286 | None:intergenic | 50.0% | |
CTACCTTCAACTAGGTCAGC+TGG | - | chr4_3:20401278-20401297 | None:intergenic | 50.0% | |
CGGCAGCAAGATGGAGAGAA+GGG | - | chr4_3:20401072-20401091 | None:intergenic | 55.0% | |
AAGTTGTCGCGGCAGCAAGA+TGG | - | chr4_3:20401081-20401100 | None:intergenic | 55.0% | |
CGGCAGCAAGATGGAGAGAA+GGG | - | chr4_3:20401072-20401091 | None:intergenic | 55.0% | |
AAGTTGTCGCGGCAGCAAGA+TGG | - | chr4_3:20401081-20401100 | None:intergenic | 55.0% | |
GCGGCAGCAAGATGGAGAGA+AGG | - | chr4_3:20401073-20401092 | None:intergenic | 60.0% | |
GCGGCAGCAAGATGGAGAGA+AGG | - | chr4_3:20401073-20401092 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 20400117 | 20401304 | 20400117 | ID=Msa0633940;Name=Msa0633940 |
chr4_3 | mRNA | 20400117 | 20401304 | 20400117 | ID=Msa0633940-mRNA-1;Parent=Msa0633940;Name=Msa0633940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|232 |
chr4_3 | exon | 20400117 | 20400295 | 20400117 | ID=Msa0633940-mRNA-1:exon:5427;Parent=Msa0633940-mRNA-1 |
chr4_3 | exon | 20400785 | 20401304 | 20400785 | ID=Msa0633940-mRNA-1:exon:5428;Parent=Msa0633940-mRNA-1 |
chr4_3 | CDS | 20400117 | 20400295 | 20400117 | ID=Msa0633940-mRNA-1:cds;Parent=Msa0633940-mRNA-1 |
chr4_3 | CDS | 20400785 | 20401304 | 20400785 | ID=Msa0633940-mRNA-1:cds;Parent=Msa0633940-mRNA-1 |
Gene Sequence |
Protein sequence |