AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0633940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0633940 MtrunA17_Chr4g0012571 94.372 231 13 0 1 231 1 231 5.75e-155 429
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 46 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTTTGCCCTTCTTCTCTT+TGG 0.204053 4_3:+20401029 Msa0633940:CDS
TCAACTAGGTCAGCTGGATT+TGG 0.237066 4_3:-20401269 None:intergenic
TGACCATATTGTATTGGATT+TGG 0.293386 4_3:+20400131 Msa0633940:CDS
TCGTCACTCGCTTAAAGTTT+TGG 0.323243 4_3:+20401148 Msa0633940:CDS
TAGATTACCAACTACTTTGA+AGG 0.357772 4_3:+20400782 Msa0633940:intron
TCTCTTTGGAATACTTTCTT+CGG 0.374925 4_3:+20401043 Msa0633940:CDS
CTTCCAAATCCAATACAATA+TGG 0.375006 4_3:-20400134 None:intergenic
CAACTAGGTCAGCTGGATTT+GGG 0.375194 4_3:-20401268 None:intergenic
TGCATCTACTGCTCGCTAAT+CGG 0.377217 4_3:+20400957 Msa0633940:CDS
TTCTAATTCTGCATACTGAT+AGG 0.378805 4_3:-20400182 None:intergenic
TTTGGGTTGTGCTCTTCGTA+TGG 0.396092 4_3:+20401102 Msa0633940:CDS
TTGGGTTGTGCTCTTCGTAT+GGG 0.402906 4_3:+20401103 Msa0633940:CDS
AAAGTATTCCAAAGAGAAGA+AGG 0.428632 4_3:-20401037 None:intergenic
GGTGTTGATATTCAATACTA+AGG 0.429220 4_3:+20401214 Msa0633940:CDS
TCTTGATCCTTCAAAGTAGT+TGG 0.429294 4_3:-20400789 None:intergenic
GAGTGACGAGCAAGTATAAC+TGG 0.443034 4_3:-20401134 None:intergenic
ATGGCATGGCATGGGATTGA+AGG 0.461512 4_3:-20400819 None:intergenic
CTACCTTCAACTAGGTCAGC+TGG 0.475286 4_3:-20401275 None:intergenic
AATCCAGCTGACCTAGTTGA+AGG 0.483463 4_3:+20401272 Msa0633940:CDS
TTTCTTGACACAATACTCAT+TGG 0.492166 4_3:+20400849 Msa0633940:CDS
GGAAGAACATGAAGATGTAA+AGG 0.495227 4_3:+20400152 Msa0633940:CDS
ATGAACTTTGTGATCATCAA+AGG 0.497786 4_3:-20400910 None:intergenic
AACACAAAGATGGCATGGCA+TGG 0.520422 4_3:-20400828 None:intergenic
GTGTAATGACCATATTGTAT+TGG 0.548354 4_3:+20400125 Msa0633940:CDS
ACACAAAGATGGCATGGCAT+GGG 0.550895 4_3:-20400827 None:intergenic
CGGCAGCAAGATGGAGAGAA+GGG 0.553496 4_3:-20401069 None:intergenic
TGGGTTGTGCTCTTCGTATG+GGG 0.556531 4_3:+20401104 Msa0633940:CDS
AAGTTGTCGCGGCAGCAAGA+TGG 0.558737 4_3:-20401078 None:intergenic
TGAACTTTGTGATCATCAAA+GGG 0.562970 4_3:-20400909 None:intergenic
GATGCAGATGGATGTCAAGA+AGG 0.564412 4_3:-20400940 None:intergenic
ATTAAGATCTACCTTCAACT+AGG 0.573127 4_3:-20401283 None:intergenic
TGGCATGGCATGGGATTGAA+GGG 0.575309 4_3:-20400818 None:intergenic
TAGGTCAGCTGGATTTGGGT+AGG 0.578541 4_3:-20401264 None:intergenic
TGTGTCAAGAAACACAAAGA+TGG 0.584873 4_3:-20400838 None:intergenic
CTTGATTATAGTATTTCACA+CGG 0.587536 4_3:-20400269 None:intergenic
CAAGAAACACAAAGATGGCA+TGG 0.592259 4_3:-20400833 None:intergenic
GCGGCAGCAAGATGGAGAGA+AGG 0.593311 4_3:-20401070 None:intergenic
AAGTATTCCAAAGAGAAGAA+GGG 0.599617 4_3:-20401036 None:intergenic
GTGTCGGATAATAGAAGCGA+TGG 0.602232 4_3:+20401172 Msa0633940:CDS
TAGCGAGCAGTAGATGCAGA+TGG 0.605364 4_3:-20400952 None:intergenic
TGAAATACTATAATCAAGCA+AGG 0.609382 4_3:+20400274 Msa0633940:CDS
GGTAGTAAAGATTACTACCA+TGG 0.620964 4_3:+20401193 Msa0633940:CDS
AATACTAAGGATTCAGCCAG+TGG 0.626440 4_3:+20401227 Msa0633940:CDS
AAGATCTACACGAAGACTCG+TGG 0.646014 4_3:+20400984 Msa0633940:CDS
TTGATTATAGTATTTCACAC+GGG 0.658993 4_3:-20400268 None:intergenic
AGTATTGAATATCAACACCA+TGG 0.687774 4_3:-20401210 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATTAATTTAATAGTAC+TGG + chr4_3:20400557-20400576 Msa0633940:intron 10.0%
!! CAATTAAAATAAATAAAAGA+GGG - chr4_3:20400626-20400645 None:intergenic 10.0%
!!! CTCTTTTATTTATTTTAATT+GGG + chr4_3:20400625-20400644 Msa0633940:intron 10.0%
!!! ATATGTTTTATATATCTAAT+CGG + chr4_3:20400753-20400772 Msa0633940:intron 10.0%
!! ATATATTAATTTAATAGTAC+TGG + chr4_3:20400557-20400576 Msa0633940:intron 10.0%
!! CAATTAAAATAAATAAAAGA+GGG - chr4_3:20400626-20400645 None:intergenic 10.0%
!!! CTCTTTTATTTATTTTAATT+GGG + chr4_3:20400625-20400644 Msa0633940:intron 10.0%
!!! ATATGTTTTATATATCTAAT+CGG + chr4_3:20400753-20400772 Msa0633940:intron 10.0%
!!! TATTATTTTGTTTTTTTGAC+TGG + chr4_3:20400341-20400360 Msa0633940:intron 15.0%
!!! TTTTTATGATACTTTGTTTA+CGG - chr4_3:20400465-20400484 None:intergenic 15.0%
!!! TAGCCTTATTTAAATATTTT+GGG - chr4_3:20400515-20400534 None:intergenic 15.0%
!! CCAATTAAAATAAATAAAAG+AGG - chr4_3:20400627-20400646 None:intergenic 15.0%
!!! CCTCTTTTATTTATTTTAAT+TGG + chr4_3:20400624-20400643 Msa0633940:intron 15.0%
!!! TATTTTTGTTTATTATGGTT+TGG + chr4_3:20400675-20400694 Msa0633940:intron 15.0%
!! CATTGTCAAAAAAAAAATTA+GGG - chr4_3:20400719-20400738 None:intergenic 15.0%
!! ACATTGTCAAAAAAAAAATT+AGG - chr4_3:20400720-20400739 None:intergenic 15.0%
!!! TATTATTTTGTTTTTTTGAC+TGG + chr4_3:20400341-20400360 Msa0633940:intron 15.0%
!!! TTTTTATGATACTTTGTTTA+CGG - chr4_3:20400465-20400484 None:intergenic 15.0%
!!! TAGCCTTATTTAAATATTTT+GGG - chr4_3:20400515-20400534 None:intergenic 15.0%
!! CCAATTAAAATAAATAAAAG+AGG - chr4_3:20400627-20400646 None:intergenic 15.0%
!!! CCTCTTTTATTTATTTTAAT+TGG + chr4_3:20400624-20400643 Msa0633940:intron 15.0%
!!! TATTTTTGTTTATTATGGTT+TGG + chr4_3:20400675-20400694 Msa0633940:intron 15.0%
!! CATTGTCAAAAAAAAAATTA+GGG - chr4_3:20400719-20400738 None:intergenic 15.0%
!! ACATTGTCAAAAAAAAAATT+AGG - chr4_3:20400720-20400739 None:intergenic 15.0%
!! TAATTACTCTTTCCATTATA+TGG + chr4_3:20400300-20400319 Msa0633940:intron 20.0%
!!! AGAACTTTTAAACCATATAA+TGG - chr4_3:20400315-20400334 None:intergenic 20.0%
!! GTGAAGAATCATATAAAATA+GGG - chr4_3:20400488-20400507 None:intergenic 20.0%
!! AGTGAAGAATCATATAAAAT+AGG - chr4_3:20400489-20400508 None:intergenic 20.0%
!! GAACCCAAAATATTTAAATA+AGG + chr4_3:20400509-20400528 Msa0633940:intron 20.0%
!!! CTAGCCTTATTTAAATATTT+TGG - chr4_3:20400516-20400535 None:intergenic 20.0%
!!! GCACATATTTTTGTTTATTA+TGG + chr4_3:20400670-20400689 Msa0633940:intron 20.0%
!!! TTTTGACAATGTTTTATGTA+TGG + chr4_3:20400728-20400747 Msa0633940:intron 20.0%
!! TAATTACTCTTTCCATTATA+TGG + chr4_3:20400300-20400319 Msa0633940:intron 20.0%
!!! AGAACTTTTAAACCATATAA+TGG - chr4_3:20400315-20400334 None:intergenic 20.0%
!! GTGAAGAATCATATAAAATA+GGG - chr4_3:20400488-20400507 None:intergenic 20.0%
!! AGTGAAGAATCATATAAAAT+AGG - chr4_3:20400489-20400508 None:intergenic 20.0%
!! GAACCCAAAATATTTAAATA+AGG + chr4_3:20400509-20400528 Msa0633940:intron 20.0%
!!! CTAGCCTTATTTAAATATTT+TGG - chr4_3:20400516-20400535 None:intergenic 20.0%
!!! GCACATATTTTTGTTTATTA+TGG + chr4_3:20400670-20400689 Msa0633940:intron 20.0%
!!! TTTTGACAATGTTTTATGTA+TGG + chr4_3:20400728-20400747 Msa0633940:intron 20.0%
! TAGAAAAAGAAGACTTAAAG+TGG + chr4_3:20400200-20400219 Msa0633940:CDS 25.0%
!! TCACTAACTTCAATTTTCTT+TGG - chr4_3:20400239-20400258 None:intergenic 25.0%
! TTGATTATAGTATTTCACAC+GGG - chr4_3:20400271-20400290 None:intergenic 25.0%
! CTTGATTATAGTATTTCACA+CGG - chr4_3:20400272-20400291 None:intergenic 25.0%
! TGAAATACTATAATCAAGCA+AGG + chr4_3:20400274-20400293 Msa0633940:CDS 25.0%
! TACGGATTTGATTAAACATA+AGG - chr4_3:20400447-20400466 None:intergenic 25.0%
! AAAAGAGGGTAGTTAATAAA+AGG - chr4_3:20400612-20400631 None:intergenic 25.0%
!!! CAAAGCTAAGAATTTTTTCT+TGG - chr4_3:20401016-20401035 None:intergenic 25.0%
! TAGAAAAAGAAGACTTAAAG+TGG + chr4_3:20400200-20400219 Msa0633940:CDS 25.0%
!! TCACTAACTTCAATTTTCTT+TGG - chr4_3:20400239-20400258 None:intergenic 25.0%
! TTGATTATAGTATTTCACAC+GGG - chr4_3:20400271-20400290 None:intergenic 25.0%
! CTTGATTATAGTATTTCACA+CGG - chr4_3:20400272-20400291 None:intergenic 25.0%
! TGAAATACTATAATCAAGCA+AGG + chr4_3:20400274-20400293 Msa0633940:CDS 25.0%
! TACGGATTTGATTAAACATA+AGG - chr4_3:20400447-20400466 None:intergenic 25.0%
! AAAAGAGGGTAGTTAATAAA+AGG - chr4_3:20400612-20400631 None:intergenic 25.0%
!!! CAAAGCTAAGAATTTTTTCT+TGG - chr4_3:20401016-20401035 None:intergenic 25.0%
GTGTAATGACCATATTGTAT+TGG + chr4_3:20400125-20400144 Msa0633940:CDS 30.0%
TGACCATATTGTATTGGATT+TGG + chr4_3:20400131-20400150 Msa0633940:CDS 30.0%
CTTCCAAATCCAATACAATA+TGG - chr4_3:20400137-20400156 None:intergenic 30.0%
TTCTAATTCTGCATACTGAT+AGG - chr4_3:20400185-20400204 None:intergenic 30.0%
!! TTTTCTTTGGTTTACTCTCA+TGG - chr4_3:20400226-20400245 None:intergenic 30.0%
TAGATTACCAACTACTTTGA+AGG + chr4_3:20400782-20400801 Msa0633940:intron 30.0%
TTTCTTGACACAATACTCAT+TGG + chr4_3:20400849-20400868 Msa0633940:CDS 30.0%
TGAACTTTGTGATCATCAAA+GGG - chr4_3:20400912-20400931 None:intergenic 30.0%
ATGAACTTTGTGATCATCAA+AGG - chr4_3:20400913-20400932 None:intergenic 30.0%
!!! AGCTAAGAATTTTTTCTTGG+TGG - chr4_3:20401013-20401032 None:intergenic 30.0%
AAGTATTCCAAAGAGAAGAA+GGG - chr4_3:20401039-20401058 None:intergenic 30.0%
! AAAGTATTCCAAAGAGAAGA+AGG - chr4_3:20401040-20401059 None:intergenic 30.0%
!! TCTCTTTGGAATACTTTCTT+CGG + chr4_3:20401043-20401062 Msa0633940:CDS 30.0%
! AGTATTGAATATCAACACCA+TGG - chr4_3:20401213-20401232 None:intergenic 30.0%
!! GGTGTTGATATTCAATACTA+AGG + chr4_3:20401214-20401233 Msa0633940:CDS 30.0%
GTGTAATGACCATATTGTAT+TGG + chr4_3:20400125-20400144 Msa0633940:CDS 30.0%
TGACCATATTGTATTGGATT+TGG + chr4_3:20400131-20400150 Msa0633940:CDS 30.0%
CTTCCAAATCCAATACAATA+TGG - chr4_3:20400137-20400156 None:intergenic 30.0%
TTCTAATTCTGCATACTGAT+AGG - chr4_3:20400185-20400204 None:intergenic 30.0%
!! TTTTCTTTGGTTTACTCTCA+TGG - chr4_3:20400226-20400245 None:intergenic 30.0%
TAGATTACCAACTACTTTGA+AGG + chr4_3:20400782-20400801 Msa0633940:intron 30.0%
TTTCTTGACACAATACTCAT+TGG + chr4_3:20400849-20400868 Msa0633940:CDS 30.0%
TGAACTTTGTGATCATCAAA+GGG - chr4_3:20400912-20400931 None:intergenic 30.0%
ATGAACTTTGTGATCATCAA+AGG - chr4_3:20400913-20400932 None:intergenic 30.0%
!!! AGCTAAGAATTTTTTCTTGG+TGG - chr4_3:20401013-20401032 None:intergenic 30.0%
AAGTATTCCAAAGAGAAGAA+GGG - chr4_3:20401039-20401058 None:intergenic 30.0%
! AAAGTATTCCAAAGAGAAGA+AGG - chr4_3:20401040-20401059 None:intergenic 30.0%
!! TCTCTTTGGAATACTTTCTT+CGG + chr4_3:20401043-20401062 Msa0633940:CDS 30.0%
! AGTATTGAATATCAACACCA+TGG - chr4_3:20401213-20401232 None:intergenic 30.0%
!! GGTGTTGATATTCAATACTA+AGG + chr4_3:20401214-20401233 Msa0633940:CDS 30.0%
GGAAGAACATGAAGATGTAA+AGG + chr4_3:20400152-20400171 Msa0633940:CDS 35.0%
GGGTCAAATTTCTAACAACT+AGG + chr4_3:20400645-20400664 Msa0633940:intron 35.0%
TCTTGATCCTTCAAAGTAGT+TGG - chr4_3:20400792-20400811 None:intergenic 35.0%
TGTGTCAAGAAACACAAAGA+TGG - chr4_3:20400841-20400860 None:intergenic 35.0%
GGTAGTAAAGATTACTACCA+TGG + chr4_3:20401193-20401212 Msa0633940:CDS 35.0%
GGAAGAACATGAAGATGTAA+AGG + chr4_3:20400152-20400171 Msa0633940:CDS 35.0%
GGGTCAAATTTCTAACAACT+AGG + chr4_3:20400645-20400664 Msa0633940:intron 35.0%
TCTTGATCCTTCAAAGTAGT+TGG - chr4_3:20400792-20400811 None:intergenic 35.0%
TGTGTCAAGAAACACAAAGA+TGG - chr4_3:20400841-20400860 None:intergenic 35.0%
GGTAGTAAAGATTACTACCA+TGG + chr4_3:20401193-20401212 Msa0633940:CDS 35.0%
CAAGAAACACAAAGATGGCA+TGG - chr4_3:20400836-20400855 None:intergenic 40.0%
ACAACCCAAAAAAGTTGTCG+CGG - chr4_3:20401092-20401111 None:intergenic 40.0%
! TCGTCACTCGCTTAAAGTTT+TGG + chr4_3:20401148-20401167 Msa0633940:CDS 40.0%
!! CGCTTAAAGTTTTGGTGTGT+CGG + chr4_3:20401156-20401175 Msa0633940:CDS 40.0%
AATACTAAGGATTCAGCCAG+TGG + chr4_3:20401227-20401246 Msa0633940:CDS 40.0%
CAAGAAACACAAAGATGGCA+TGG - chr4_3:20400836-20400855 None:intergenic 40.0%
ACAACCCAAAAAAGTTGTCG+CGG - chr4_3:20401092-20401111 None:intergenic 40.0%
! TCGTCACTCGCTTAAAGTTT+TGG + chr4_3:20401148-20401167 Msa0633940:CDS 40.0%
!! CGCTTAAAGTTTTGGTGTGT+CGG + chr4_3:20401156-20401175 Msa0633940:CDS 40.0%
AATACTAAGGATTCAGCCAG+TGG + chr4_3:20401227-20401246 Msa0633940:CDS 40.0%
ACACAAAGATGGCATGGCAT+GGG - chr4_3:20400830-20400849 None:intergenic 45.0%
AACACAAAGATGGCATGGCA+TGG - chr4_3:20400831-20400850 None:intergenic 45.0%
GATGCAGATGGATGTCAAGA+AGG - chr4_3:20400943-20400962 None:intergenic 45.0%
TGCATCTACTGCTCGCTAAT+CGG + chr4_3:20400957-20400976 Msa0633940:CDS 45.0%
AAGATCTACACGAAGACTCG+TGG + chr4_3:20400984-20401003 Msa0633940:CDS 45.0%
AGCTTTGCCCTTCTTCTCTT+TGG + chr4_3:20401029-20401048 Msa0633940:CDS 45.0%
!! TTTGGGTTGTGCTCTTCGTA+TGG + chr4_3:20401102-20401121 Msa0633940:CDS 45.0%
! TTGGGTTGTGCTCTTCGTAT+GGG + chr4_3:20401103-20401122 Msa0633940:CDS 45.0%
GAGTGACGAGCAAGTATAAC+TGG - chr4_3:20401137-20401156 None:intergenic 45.0%
GTGTCGGATAATAGAAGCGA+TGG + chr4_3:20401172-20401191 Msa0633940:CDS 45.0%
!! GGTTGTTTTGTTGCTTCCAC+TGG - chr4_3:20401246-20401265 None:intergenic 45.0%
CAACTAGGTCAGCTGGATTT+GGG - chr4_3:20401271-20401290 None:intergenic 45.0%
TCAACTAGGTCAGCTGGATT+TGG - chr4_3:20401272-20401291 None:intergenic 45.0%
AATCCAGCTGACCTAGTTGA+AGG + chr4_3:20401272-20401291 Msa0633940:CDS 45.0%
ACACAAAGATGGCATGGCAT+GGG - chr4_3:20400830-20400849 None:intergenic 45.0%
AACACAAAGATGGCATGGCA+TGG - chr4_3:20400831-20400850 None:intergenic 45.0%
GATGCAGATGGATGTCAAGA+AGG - chr4_3:20400943-20400962 None:intergenic 45.0%
TGCATCTACTGCTCGCTAAT+CGG + chr4_3:20400957-20400976 Msa0633940:CDS 45.0%
AAGATCTACACGAAGACTCG+TGG + chr4_3:20400984-20401003 Msa0633940:CDS 45.0%
AGCTTTGCCCTTCTTCTCTT+TGG + chr4_3:20401029-20401048 Msa0633940:CDS 45.0%
!! TTTGGGTTGTGCTCTTCGTA+TGG + chr4_3:20401102-20401121 Msa0633940:CDS 45.0%
! TTGGGTTGTGCTCTTCGTAT+GGG + chr4_3:20401103-20401122 Msa0633940:CDS 45.0%
GAGTGACGAGCAAGTATAAC+TGG - chr4_3:20401137-20401156 None:intergenic 45.0%
GTGTCGGATAATAGAAGCGA+TGG + chr4_3:20401172-20401191 Msa0633940:CDS 45.0%
!! GGTTGTTTTGTTGCTTCCAC+TGG - chr4_3:20401246-20401265 None:intergenic 45.0%
CAACTAGGTCAGCTGGATTT+GGG - chr4_3:20401271-20401290 None:intergenic 45.0%
TCAACTAGGTCAGCTGGATT+TGG - chr4_3:20401272-20401291 None:intergenic 45.0%
AATCCAGCTGACCTAGTTGA+AGG + chr4_3:20401272-20401291 Msa0633940:CDS 45.0%
TGGCATGGCATGGGATTGAA+GGG - chr4_3:20400821-20400840 None:intergenic 50.0%
ATGGCATGGCATGGGATTGA+AGG - chr4_3:20400822-20400841 None:intergenic 50.0%
TAGCGAGCAGTAGATGCAGA+TGG - chr4_3:20400955-20400974 None:intergenic 50.0%
!!! TGCTGCCGCGACAACTTTTT+TGG + chr4_3:20401084-20401103 Msa0633940:CDS 50.0%
!!! GCTGCCGCGACAACTTTTTT+GGG + chr4_3:20401085-20401104 Msa0633940:CDS 50.0%
TGGGTTGTGCTCTTCGTATG+GGG + chr4_3:20401104-20401123 Msa0633940:CDS 50.0%
TAGGTCAGCTGGATTTGGGT+AGG - chr4_3:20401267-20401286 None:intergenic 50.0%
CTACCTTCAACTAGGTCAGC+TGG - chr4_3:20401278-20401297 None:intergenic 50.0%
TGGCATGGCATGGGATTGAA+GGG - chr4_3:20400821-20400840 None:intergenic 50.0%
ATGGCATGGCATGGGATTGA+AGG - chr4_3:20400822-20400841 None:intergenic 50.0%
TAGCGAGCAGTAGATGCAGA+TGG - chr4_3:20400955-20400974 None:intergenic 50.0%
!!! TGCTGCCGCGACAACTTTTT+TGG + chr4_3:20401084-20401103 Msa0633940:CDS 50.0%
!!! GCTGCCGCGACAACTTTTTT+GGG + chr4_3:20401085-20401104 Msa0633940:CDS 50.0%
TGGGTTGTGCTCTTCGTATG+GGG + chr4_3:20401104-20401123 Msa0633940:CDS 50.0%
TAGGTCAGCTGGATTTGGGT+AGG - chr4_3:20401267-20401286 None:intergenic 50.0%
CTACCTTCAACTAGGTCAGC+TGG - chr4_3:20401278-20401297 None:intergenic 50.0%
CGGCAGCAAGATGGAGAGAA+GGG - chr4_3:20401072-20401091 None:intergenic 55.0%
AAGTTGTCGCGGCAGCAAGA+TGG - chr4_3:20401081-20401100 None:intergenic 55.0%
CGGCAGCAAGATGGAGAGAA+GGG - chr4_3:20401072-20401091 None:intergenic 55.0%
AAGTTGTCGCGGCAGCAAGA+TGG - chr4_3:20401081-20401100 None:intergenic 55.0%
GCGGCAGCAAGATGGAGAGA+AGG - chr4_3:20401073-20401092 None:intergenic 60.0%
GCGGCAGCAAGATGGAGAGA+AGG - chr4_3:20401073-20401092 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 20400117 20401304 20400117 ID=Msa0633940;Name=Msa0633940
chr4_3 mRNA 20400117 20401304 20400117 ID=Msa0633940-mRNA-1;Parent=Msa0633940;Name=Msa0633940-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|2|0|232
chr4_3 exon 20400117 20400295 20400117 ID=Msa0633940-mRNA-1:exon:5427;Parent=Msa0633940-mRNA-1
chr4_3 exon 20400785 20401304 20400785 ID=Msa0633940-mRNA-1:exon:5428;Parent=Msa0633940-mRNA-1
chr4_3 CDS 20400117 20400295 20400117 ID=Msa0633940-mRNA-1:cds;Parent=Msa0633940-mRNA-1
chr4_3 CDS 20400785 20401304 20400785 ID=Msa0633940-mRNA-1:cds;Parent=Msa0633940-mRNA-1
Gene Sequence

>Msa0633940

ATGGATGCGTGTAATGACCATATTGTATTGGATTTGGAAGAACATGAAGATGTAAAGGATGTTAGCCTATCAGTATGCAGAATTAGAAAAAGAAGACTTAAAGTGGCCATGAGAGTAAACCAAAGAAAATTGAAGTTAGTGAACTGCTTATCCCGTGTGAAATACTATAATCAAGCAAGATTACCAACTACTTTGAAGGATCAAGACTTTTTCCCTTCAATCCCATGCCATGCCATCTTTGTGTTTCTTGACACAATACTCATTGGTGTATTGCAAGTTCAGTATCAAAACAAGAAAGAATCTCCCTTTGATGATCACAAAGTTCATATGCAAACCTTCTTGACATCCATCTGCATCTACTGCTCGCTAATCGGAATCAAGATCTACACGAAGACTCGTGGTTGCCACCAAGAAAAAATTCTTAGCTTTGCCCTTCTTCTCTTTGGAATACTTTCTTCGGCTTCCCTTCTCTCCATCTTGCTGCCGCGACAACTTTTTTGGGTTGTGCTCTTCGTATGGGGATCTATACCAGTTATACTTGCTCGTCACTCGCTTAAAGTTTTGGTGTGTCGGATAATAGAAGCGATGGTAGTAAAGATTACTACCATGGTGTTGATATTCAATACTAAGGATTCAGCCAGTGGAAGCAACAAAACAACCTACCCAAATCCAGCTGACCTAGTTGAAGGTAGATCTTAA

Protein sequence

>Msa0633940

MDACNDHIVLDLEEHEDVKDVSLSVCRIRKRRLKVAMRVNQRKLKLVNCLSRVKYYNQARLPTTLKDQDFFPSIPCHAIFVFLDTILIGVLQVQYQNKKESPFDDHKVHMQTFLTSICIYCSLIGIKIYTKTRGCHQEKILSFALLLFGILSSASLLSILLPRQLFWVVLFVWGSIPVILARHSLKVLVCRIIEAMVVKITTMVLIFNTKDSASGSNKTTYPNPADLVEGRS*