Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996010 | GAU45432.1 | 76.538 | 520 | 41 | 9 | 1 | 441 | 1 | 518 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996010 | sp|Q9ZPS7|TMN3_ARATH | 69.860 | 501 | 71 | 7 | 21 | 441 | 20 | 520 | 0.0 | 675 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996010 | A0A2Z6P978 | 76.538 | 520 | 41 | 9 | 1 | 441 | 1 | 518 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0035250 | Msa0996010 | 0.807327 | 5.336054e-50 | -8.615850e-47 |
| Msa0058440 | Msa0996010 | 0.812540 | 4.027567e-51 | -8.615850e-47 |
| Msa0790110 | Msa0996010 | 0.801642 | 8.178040e-49 | -8.615850e-47 |
| Msa0996010 | Msa1128650 | 0.809852 | 1.541512e-50 | -8.615850e-47 |
| Msa0996010 | Msa1335970 | 0.806838 | 6.771074e-50 | -8.615850e-47 |
| Msa0242260 | Msa0996010 | 0.804476 | 2.121519e-49 | -8.615850e-47 |
| Msa0258220 | Msa0996010 | 0.837142 | 6.187986e-57 | -8.615850e-47 |
| Msa0265980 | Msa0996010 | 0.808638 | 2.806918e-50 | -8.615850e-47 |
| Msa0280470 | Msa0996010 | 0.801540 | 8.581597e-49 | -8.615850e-47 |
| Msa0549420 | Msa0996010 | 0.809044 | 2.298774e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996010 | MtrunA17_Chr8g0375501 | 69.034 | 507 | 77 | 7 | 15 | 441 | 13 | 519 | 0.0 | 671 |
| Msa0996010 | MtrunA17_Chr5g0434001 | 52.767 | 506 | 152 | 8 | 20 | 441 | 33 | 535 | 8.82e-161 | 467 |
| Msa0996010 | MtrunA17_Chr6g0480551 | 87.302 | 252 | 3 | 3 | 1 | 227 | 1 | 248 | 1.31e-150 | 441 |
| Msa0996010 | MtrunA17_Chr6g0480551 | 100.000 | 195 | 0 | 0 | 247 | 441 | 322 | 516 | 5.99e-134 | 398 |
| Msa0996010 | MtrunA17_Chr8g0342031 | 27.434 | 565 | 272 | 13 | 9 | 445 | 26 | 580 | 4.12e-60 | 207 |
| Msa0996010 | MtrunA17_Chr4g0026371 | 44.103 | 195 | 109 | 0 | 247 | 441 | 324 | 518 | 4.42e-55 | 192 |
| Msa0996010 | MtrunA17_Chr4g0026371 | 41.475 | 217 | 100 | 3 | 21 | 210 | 20 | 236 | 3.02e-50 | 179 |
| Msa0996010 | MtrunA17_Chr3g0136881 | 26.852 | 540 | 261 | 15 | 34 | 445 | 35 | 568 | 5.42e-53 | 187 |
| Msa0996010 | MtrunA17_Chr8g0380651 | 39.801 | 201 | 121 | 0 | 240 | 440 | 316 | 516 | 1.03e-44 | 164 |
| Msa0996010 | MtrunA17_Chr8g0380651 | 32.751 | 229 | 123 | 5 | 25 | 227 | 22 | 245 | 5.21e-31 | 125 |
| Msa0996010 | MtrunA17_Chr2g0277491 | 40.299 | 201 | 120 | 0 | 240 | 440 | 310 | 510 | 6.99e-42 | 156 |
| Msa0996010 | MtrunA17_Chr2g0277491 | 32.468 | 231 | 119 | 5 | 25 | 227 | 18 | 239 | 7.50e-31 | 125 |
| Msa0996010 | MtrunA17_Chr1g0150181 | 37.688 | 199 | 123 | 1 | 247 | 445 | 372 | 569 | 6.66e-40 | 151 |
| Msa0996010 | MtrunA17_Chr4g0065301 | 33.500 | 200 | 121 | 4 | 248 | 441 | 390 | 583 | 2.68e-29 | 120 |
| Msa0996010 | MtrunA17_Chr3g0120461 | 25.558 | 403 | 222 | 12 | 108 | 441 | 193 | 586 | 2.31e-26 | 112 |
| Msa0996010 | MtrunA17_Chr5g0448371 | 26.966 | 356 | 193 | 11 | 146 | 441 | 244 | 592 | 2.40e-26 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0996010 | AT2G01970.1 | 69.860 | 501 | 71 | 7 | 21 | 441 | 20 | 520 | 0.0 | 675 |
| Msa0996010 | AT1G14670.1 | 69.539 | 499 | 72 | 7 | 23 | 441 | 22 | 520 | 0.0 | 647 |
| Msa0996010 | AT5G37310.1 | 64.940 | 502 | 96 | 7 | 20 | 441 | 20 | 521 | 0.0 | 620 |
| Msa0996010 | AT5G37310.2 | 64.940 | 502 | 96 | 7 | 20 | 441 | 20 | 521 | 0.0 | 620 |
| Msa0996010 | AT1G08350.4 | 40.763 | 498 | 215 | 7 | 25 | 442 | 22 | 519 | 2.89e-124 | 372 |
| Msa0996010 | AT1G08350.3 | 40.644 | 497 | 215 | 7 | 25 | 441 | 22 | 518 | 2.74e-123 | 371 |
| Msa0996010 | AT1G08350.2 | 40.644 | 497 | 215 | 7 | 25 | 441 | 22 | 518 | 2.74e-123 | 371 |
| Msa0996010 | AT1G08350.1 | 37.529 | 437 | 193 | 7 | 85 | 441 | 1 | 437 | 1.05e-93 | 292 |
| Msa0996010 | AT5G10840.1 | 26.642 | 548 | 261 | 14 | 30 | 445 | 42 | 580 | 1.64e-56 | 198 |
| Msa0996010 | AT5G25100.1 | 25.960 | 547 | 268 | 13 | 30 | 445 | 36 | 576 | 3.57e-56 | 197 |
| Msa0996010 | AT2G24170.1 | 26.897 | 580 | 278 | 11 | 1 | 445 | 1 | 569 | 5.81e-56 | 196 |
| Msa0996010 | AT5G25100.2 | 26.199 | 542 | 263 | 13 | 35 | 445 | 48 | 583 | 1.57e-55 | 195 |
| Msa0996010 | AT3G13772.1 | 25.919 | 544 | 269 | 13 | 30 | 445 | 36 | 573 | 6.86e-55 | 193 |
| Msa0996010 | AT1G10950.1 | 40.000 | 200 | 120 | 0 | 241 | 440 | 317 | 516 | 1.44e-40 | 153 |
| Msa0996010 | AT1G10950.1 | 32.900 | 231 | 118 | 5 | 25 | 227 | 24 | 245 | 1.16e-31 | 127 |
| Msa0996010 | AT1G55130.1 | 37.688 | 199 | 123 | 1 | 247 | 445 | 372 | 569 | 6.59e-40 | 152 |
| Msa0996010 | AT5G35160.1 | 27.089 | 347 | 180 | 11 | 158 | 441 | 221 | 557 | 8.51e-26 | 110 |
| Msa0996010 | AT5G35160.2 | 27.035 | 344 | 184 | 10 | 158 | 441 | 249 | 585 | 1.05e-25 | 110 |
| Msa0996010 | AT5G35160.3 | 27.035 | 344 | 184 | 10 | 158 | 441 | 249 | 585 | 1.05e-25 | 110 |
| Msa0996010 | AT5G35160.4 | 27.035 | 344 | 184 | 10 | 158 | 441 | 249 | 585 | 1.05e-25 | 110 |
| Msa0996010 | AT4G12650.1 | 27.928 | 333 | 174 | 10 | 168 | 441 | 254 | 579 | 1.93e-24 | 106 |
Find 129 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATATATTTGCCAGTGTC+TGG | 0.215685 | 6_4:-73583402 | Msa0996010:CDS |
| ACACAGAGTCCTTGTCCTTT+TGG | 0.251570 | 6_4:+73584869 | None:intergenic |
| CTTTCTTGCACCAATTTCTA+TGG | 0.270220 | 6_4:-73583220 | Msa0996010:three_prime_UTR |
| AAACAATAAACCATAGAAAT+TGG | 0.292209 | 6_4:+73583210 | None:intergenic |
| CTTGTATTGGGAGGGATTGC+TGG | 0.316117 | 6_4:-73583571 | Msa0996010:CDS |
| TACGTCTCCTCTACTTGTAT+TGG | 0.316329 | 6_4:-73583584 | Msa0996010:CDS |
| GTTATATATGCACTCACTTC+AGG | 0.319264 | 6_4:-73583911 | Msa0996010:CDS |
| TCCTCCTTTGCCATGGTATC+GGG | 0.329441 | 6_4:-73583488 | Msa0996010:CDS |
| TACGGTGTTCATATTCATAT+TGG | 0.349084 | 6_4:-73583989 | Msa0996010:CDS |
| ACGTCTCCTCTACTTGTATT+GGG | 0.350290 | 6_4:-73583583 | Msa0996010:CDS |
| TGTTATAAAATATATCAAAA+TGG | 0.350719 | 6_4:+73584671 | None:intergenic |
| TGTTTATAGTCCCCTTAGTT+AGG | 0.354605 | 6_4:-73583192 | Msa0996010:three_prime_UTR |
| AACCAACCTGGTATACAAAA+TGG | 0.355606 | 6_4:+73585923 | None:intergenic |
| CACCGCTTCAATCTTATGTT+TGG | 0.360697 | 6_4:+73586687 | None:intergenic |
| GTAACATCCACAAGGGCATT+TGG | 0.374033 | 6_4:+73584613 | None:intergenic |
| GGAGATGAAGAGAGAAGAAA+TGG | 0.385785 | 6_4:+73586439 | None:intergenic |
| AAGAAGGCGAGGATGAATAA+TGG | 0.388893 | 6_4:+73586464 | None:intergenic |
| TTGTCGTTATAGTTCTCATA+TGG | 0.395244 | 6_4:-73583615 | Msa0996010:CDS |
| ATATTCATATTGGCACTTGT+TGG | 0.402301 | 6_4:-73583979 | Msa0996010:CDS |
| TTCCTCCTTTGCCATGGTAT+CGG | 0.402307 | 6_4:-73583489 | Msa0996010:CDS |
| GAAAGAGAAGAAAGAAGCAT+TGG | 0.407672 | 6_4:-73584944 | Msa0996010:CDS |
| ACCAGTGGATTTCCAAATGA+TGG | 0.412001 | 6_4:+73584482 | None:intergenic |
| GCACTCACTTCAGGAATTGC+TGG | 0.413621 | 6_4:-73583902 | Msa0996010:CDS |
| GTCAACTGGAAGGAACAAAC+TGG | 0.416389 | 6_4:-73583856 | Msa0996010:CDS |
| GTCCTCGCTACCCCATCATT+TGG | 0.419122 | 6_4:-73584494 | Msa0996010:CDS |
| TTATATATTTGCCAGTGTCT+GGG | 0.430768 | 6_4:-73583401 | Msa0996010:CDS |
| TATTACCAACCAATCTTCAA+TGG | 0.438341 | 6_4:-73586498 | Msa0996010:exon |
| TCATCTTCGCCATTGAAGAT+TGG | 0.438390 | 6_4:+73586489 | None:intergenic |
| TTTCATAGGGAAGGTTGATA+AGG | 0.446067 | 6_4:-73584740 | Msa0996010:intron |
| GGATATTTAGTTGTGCGGAC+TGG | 0.447634 | 6_4:+73583520 | None:intergenic |
| ATACTAGTAATACCTAACTA+AGG | 0.449588 | 6_4:+73583180 | None:intergenic |
| GAGAGAAGAAATGGAGAAGA+AGG | 0.451582 | 6_4:+73586448 | None:intergenic |
| GTCACAGTCCTCCTCTTGAC+TGG | 0.456631 | 6_4:-73584439 | Msa0996010:CDS |
| GAAATAGAGGCCCACAGAAA+AGG | 0.459642 | 6_4:+73583707 | None:intergenic |
| AAGCAAAATGTAAGAAATAG+AGG | 0.470399 | 6_4:+73583694 | None:intergenic |
| CCCATCATTTGGAAATCCAC+TGG | 0.476786 | 6_4:-73584483 | Msa0996010:CDS |
| CATTGGGTGAAGTGTTGAAT+GGG | 0.484672 | 6_4:-73584927 | Msa0996010:CDS |
| TACCTCATTCTATTGTCAAC+TGG | 0.491307 | 6_4:-73583870 | Msa0996010:CDS |
| AAAGAGAAGAAAGAAGCATT+GGG | 0.492920 | 6_4:-73584943 | Msa0996010:CDS |
| TCAGATAAACGTTACAAAGA+AGG | 0.494228 | 6_4:-73586398 | Msa0996010:CDS |
| TAACGACAATTGTGCCGAAT+GGG | 0.498949 | 6_4:+73583629 | None:intergenic |
| TTGTATTGGGAGGGATTGCT+GGG | 0.499754 | 6_4:-73583570 | Msa0996010:CDS |
| AAGTACCTTGGATTATGAAA+AGG | 0.506207 | 6_4:+73586341 | None:intergenic |
| AATTCTGTGGCCCCAGACAC+TGG | 0.506214 | 6_4:+73583390 | None:intergenic |
| CTTCGCCATTGAAGATTGGT+TGG | 0.509181 | 6_4:+73586493 | None:intergenic |
| GAATAGAGCCCTCGGTTGTA+CGG | 0.513532 | 6_4:+73583946 | None:intergenic |
| GCTACTGCCGCTCTCCCATT+CGG | 0.515377 | 6_4:-73583643 | Msa0996010:CDS |
| CCTCTCTTCGCTAACAAAGT+TGG | 0.516706 | 6_4:-73586365 | Msa0996010:CDS |
| CCAGTGGATTTCCAAATGAT+GGG | 0.517728 | 6_4:+73584483 | None:intergenic |
| CAAAATGGATGTGCTTGTAA+AGG | 0.520184 | 6_4:+73584686 | None:intergenic |
| ATAGGGAAGGTTGATAAGGA+GGG | 0.521709 | 6_4:-73584736 | Msa0996010:intron |
| CTCCTCTACTTGTATTGGGA+GGG | 0.524300 | 6_4:-73583579 | Msa0996010:CDS |
| GGCAAAGGAGGAATCTCCCT+TGG | 0.527338 | 6_4:+73583499 | None:intergenic |
| GACACTTACAAAAGAAGAAG+TGG | 0.527829 | 6_4:-73584833 | Msa0996010:CDS |
| CATGATCTTCAGCAGCAAGC+TGG | 0.529624 | 6_4:+73583284 | None:intergenic |
| CCCTTGGATATTTAGTTGTG+CGG | 0.531342 | 6_4:+73583515 | None:intergenic |
| AGTGTTGAATGGGGATAGGT+TGG | 0.533187 | 6_4:-73584917 | Msa0996010:CDS |
| GTTCGGAATTTACTATTGAC+CGG | 0.534508 | 6_4:-73583733 | Msa0996010:CDS |
| GCATTGGGTGAAGTGTTGAA+TGG | 0.536950 | 6_4:-73584928 | Msa0996010:CDS |
| TTTCTATACTGTGAAATGGA+AGG | 0.537931 | 6_4:-73584563 | Msa0996010:CDS |
| ATTCCTCAGATGGCAATGGC+AGG | 0.540197 | 6_4:-73583460 | Msa0996010:CDS |
| CATAGGGAAGGTTGATAAGG+AGG | 0.540980 | 6_4:-73584737 | Msa0996010:intron |
| GTGAAGTGTTGAATGGGGAT+AGG | 0.548060 | 6_4:-73584921 | Msa0996010:CDS |
| TAGTTGTGCGGACTGGAGCT+TGG | 0.548078 | 6_4:+73583527 | None:intergenic |
| AAATGATGGGGTAGCGAGGA+CGG | 0.550197 | 6_4:+73584496 | None:intergenic |
| TTATCAGCTCGAATTCCAAA+AGG | 0.551083 | 6_4:-73584884 | Msa0996010:CDS |
| AGGTAGTATCTATAATCACT+AGG | 0.554450 | 6_4:+73584706 | None:intergenic |
| TATATATTTGCCAGTGTCTG+GGG | 0.557505 | 6_4:-73583400 | Msa0996010:CDS |
| AAGAAATGGAGAAGAAGGCG+AGG | 0.559753 | 6_4:+73586453 | None:intergenic |
| AAAAGAAGGAAGGTGAAGAT+GGG | 0.560065 | 6_4:+73586644 | None:intergenic |
| AGGCCCACAGAAAAGGCATC+CGG | 0.561889 | 6_4:+73583714 | None:intergenic |
| CCCCGATACCATGGCAAAGG+AGG | 0.562801 | 6_4:+73583487 | None:intergenic |
| GGTAGTATCTATAATCACTA+GGG | 0.562961 | 6_4:+73584707 | None:intergenic |
| CTGAAGATCATGAATGGTGG+TGG | 0.564533 | 6_4:-73583273 | Msa0996010:CDS |
| TTGTTATGTGAAAGTGAAGA+GGG | 0.566755 | 6_4:+73586548 | None:intergenic |
| ATCTGATGAATCAGATCTGA+CGG | 0.568724 | 6_4:+73586415 | None:intergenic |
| TACTAGTAATACCTAACTAA+GGG | 0.569629 | 6_4:+73583181 | None:intergenic |
| ATCCCTCCCAATACAAGTAG+AGG | 0.569721 | 6_4:+73583577 | None:intergenic |
| CACTCCCTTCGAGAAGCGGA+TGG | 0.569874 | 6_4:-73584533 | Msa0996010:CDS |
| TTGTCCATCCGCTTCTCGAA+GGG | 0.570473 | 6_4:+73584529 | None:intergenic |
| TGTTACTGCTTTCATTACTG+TGG | 0.578518 | 6_4:-73583320 | Msa0996010:CDS |
| AACGGATCCAAATGCCCTTG+TGG | 0.580190 | 6_4:-73584620 | Msa0996010:CDS |
| CTTGTCCATCCGCTTCTCGA+AGG | 0.580261 | 6_4:+73584528 | None:intergenic |
| TCGGGGAGCAATTCCTCAGA+TGG | 0.580703 | 6_4:-73583470 | Msa0996010:CDS |
| TTGCTGCTGAAGATCATGAA+TGG | 0.582525 | 6_4:-73583279 | Msa0996010:CDS |
| TTCCAGTTGACAATAGAATG+AGG | 0.583452 | 6_4:+73583868 | None:intergenic |
| AATCCTGCCATTGCCATCTG+AGG | 0.585284 | 6_4:+73583457 | None:intergenic |
| CCAACTTTGTTAGCGAAGAG+AGG | 0.587195 | 6_4:+73586365 | None:intergenic |
| CTAACACTCCCTTCGAGAAG+CGG | 0.587277 | 6_4:-73584537 | Msa0996010:CDS |
| GGGAGATTCCTCCTTTGCCA+TGG | 0.590122 | 6_4:-73583495 | Msa0996010:CDS |
| TCCGCACAACTAAATATCCA+AGG | 0.591816 | 6_4:-73583516 | Msa0996010:CDS |
| TCTCCTCTACTTGTATTGGG+AGG | 0.599263 | 6_4:-73583580 | Msa0996010:CDS |
| ATAACGACAATTGTGCCGAA+TGG | 0.606594 | 6_4:+73583628 | None:intergenic |
| GGAGTGTGTTGATAATAAAG+AGG | 0.610696 | 6_4:+73586618 | None:intergenic |
| TTGCAAGAAAACCAGTCAAG+AGG | 0.612188 | 6_4:+73584428 | None:intergenic |
| CCTCCTTTGCCATGGTATCG+GGG | 0.612898 | 6_4:-73583487 | Msa0996010:CDS |
| ATATAAGAAGATGAAGAATG+TGG | 0.616732 | 6_4:+73586597 | None:intergenic |
| GCTCCCCGATACCATGGCAA+AGG | 0.619903 | 6_4:+73583484 | None:intergenic |
| TTCCAAATGATGGGGTAGCG+AGG | 0.620376 | 6_4:+73584492 | None:intergenic |
| TCGATGTAAATAGCACTGAA+AGG | 0.620759 | 6_4:+73583430 | None:intergenic |
| GGAATTGCTCCCCGATACCA+TGG | 0.625145 | 6_4:+73583478 | None:intergenic |
| AATTGATAATCGAAAACCAG+TGG | 0.626537 | 6_4:+73584467 | None:intergenic |
| TCATTCTATTGTCAACTGGA+AGG | 0.630520 | 6_4:-73583866 | Msa0996010:CDS |
| CAAGAAAACCAGTCAAGAGG+AGG | 0.631428 | 6_4:+73584431 | None:intergenic |
| AGTGCAGTGAATAGAGCCCT+CGG | 0.633230 | 6_4:+73583938 | None:intergenic |
| AGCAATTCCTCAGATGGCAA+TGG | 0.634595 | 6_4:-73583464 | Msa0996010:CDS |
| AAGATCATGAATGGTGGTGG+AGG | 0.635786 | 6_4:-73583270 | Msa0996010:CDS |
| TATTGAGATCAATGTGCGAA+CGG | 0.636703 | 6_4:-73584638 | Msa0996010:intron |
| CACCAAACATAAGATTGAAG+CGG | 0.637337 | 6_4:-73586689 | Msa0996010:five_prime_UTR |
| AATTGTGCCGAATGGGAGAG+CGG | 0.644658 | 6_4:+73583636 | None:intergenic |
| GAGTGTGTTGATAATAAAGA+GGG | 0.645942 | 6_4:+73586619 | None:intergenic |
| TAGGGAAGGTTGATAAGGAG+GGG | 0.648260 | 6_4:-73584735 | Msa0996010:intron |
| TGCCCTTGTGGATGTTACAG+AGG | 0.650587 | 6_4:-73584608 | Msa0996010:CDS |
| CTGCTGAAGATCATGAATGG+TGG | 0.659388 | 6_4:-73583276 | Msa0996010:CDS |
| CCGCACAACTAAATATCCAA+GGG | 0.660490 | 6_4:-73583515 | Msa0996010:CDS |
| CAGTGGATTTCCAAATGATG+GGG | 0.661541 | 6_4:+73584484 | None:intergenic |
| GCTCGAATTCCAAAAGGACA+AGG | 0.662065 | 6_4:-73584878 | Msa0996010:CDS |
| AAAGGACAAGGACTCTGTGT+CGG | 0.665112 | 6_4:-73584866 | Msa0996010:CDS |
| TGTCCTCTGTAACATCCACA+AGG | 0.669975 | 6_4:+73584605 | None:intergenic |
| GTTGTTATGTGAAAGTGAAG+AGG | 0.675254 | 6_4:+73586547 | None:intergenic |
| ATTGGGTGAAGTGTTGAATG+GGG | 0.679717 | 6_4:-73584926 | Msa0996010:CDS |
| TCAACTGGAAGGAACAAACT+GGG | 0.689021 | 6_4:-73583855 | Msa0996010:intron |
| TGTAGATTGTGTAAATTCTG+TGG | 0.694009 | 6_4:+73583377 | None:intergenic |
| ACTAGTAATACCTAACTAAG+GGG | 0.698054 | 6_4:+73583182 | None:intergenic |
| GTTATGTGAAAGTGAAGAGG+GGG | 0.700107 | 6_4:+73586550 | None:intergenic |
| TGATGAATCAGATCTGACGG+TGG | 0.706629 | 6_4:+73586418 | None:intergenic |
| GATTGCTGGGAAGAACAGCA+AGG | 0.708765 | 6_4:-73583557 | Msa0996010:CDS |
| GTCCTCTGTAACATCCACAA+GGG | 0.709898 | 6_4:+73584606 | None:intergenic |
| TGTTATGTGAAAGTGAAGAG+GGG | 0.714309 | 6_4:+73586549 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATGTTTAATTTTTAAATCA+TGG | - | chr6_4:73584144-73584163 | Msa0996010:intron | 10.0% |
| !! | TGTTATAAAATATATCAAAA+TGG | + | chr6_4:73585206-73585225 | None:intergenic | 10.0% |
| !!! | TTTTGATATATTTTATAACA+AGG | - | chr6_4:73585206-73585225 | Msa0996010:intron | 10.0% |
| !!! | ATTCTGTTACATTTTTTAAT+TGG | - | chr6_4:73583659-73583678 | Msa0996010:CDS | 15.0% |
| !!! | TTCTGTTACATTTTTTAATT+GGG | - | chr6_4:73583660-73583679 | Msa0996010:CDS | 15.0% |
| !!! | AAGTTTTAATTTTTAAATCG+TGG | - | chr6_4:73584015-73584034 | Msa0996010:intron | 15.0% |
| !!! | TTTTTAAATCATGGTTATTT+AGG | - | chr6_4:73584153-73584172 | Msa0996010:intron | 15.0% |
| !!! | TTTTAAATCATGGTTATTTA+GGG | - | chr6_4:73584154-73584173 | Msa0996010:intron | 15.0% |
| !!! | TTTTCTTATCATTAATATCA+AGG | + | chr6_4:73584361-73584380 | None:intergenic | 15.0% |
| !! | ATTAATGATAAGAAAATCAA+AGG | - | chr6_4:73584365-73584384 | Msa0996010:intron | 15.0% |
| !!! | ATGCAAATGTTTTAAAATAT+CGG | - | chr6_4:73584404-73584423 | Msa0996010:intron | 15.0% |
| !!! | ATTTTGAGATATTTTCTTTT+TGG | - | chr6_4:73584869-73584888 | Msa0996010:CDS | 15.0% |
| !!! | TTTTGAGATATTTTCTTTTT+GGG | - | chr6_4:73584870-73584889 | Msa0996010:CDS | 15.0% |
| !! | AAAAAAAACACAAATAGAAA+AGG | + | chr6_4:73585517-73585536 | None:intergenic | 15.0% |
| !!! | TTTTCTATTTGTGTTTTTTT+TGG | - | chr6_4:73585516-73585535 | Msa0996010:intron | 15.0% |
| !!! | ATTTTTAAATCGTGGTTATT+CGG | - | chr6_4:73584023-73584042 | Msa0996010:intron | 20.0% |
| !!! | GTTTTAAGTTATAGTTATGT+TGG | - | chr6_4:73584047-73584066 | Msa0996010:intron | 20.0% |
| !! | TCAATTCTTAAATCATGTAA+CGG | + | chr6_4:73584469-73584488 | None:intergenic | 20.0% |
| !! | AAATCATGATGTTAAAACAT+GGG | - | chr6_4:73584523-73584542 | Msa0996010:CDS | 20.0% |
| !!! | TATGACTCAATATTTAACTT+TGG | - | chr6_4:73584820-73584839 | Msa0996010:CDS | 20.0% |
| !!! | TTTGAGATATTTTCTTTTTG+GGG | - | chr6_4:73584871-73584890 | Msa0996010:CDS | 20.0% |
| !! | CTTTAATTGAACATATTGAA+TGG | + | chr6_4:73585784-73585803 | None:intergenic | 20.0% |
| !! | AATTAAAGAAAACTCATTTC+AGG | - | chr6_4:73585796-73585815 | Msa0996010:intron | 20.0% |
| !!! | ACTTATAAATCTATGCATTT+TGG | - | chr6_4:73586047-73586066 | Msa0996010:intron | 20.0% |
| !! | AAACAATAAACCATAGAAAT+TGG | + | chr6_4:73586667-73586686 | None:intergenic | 20.0% |
| ! | TAATAAAGAGGGAAAAAAGA+AGG | + | chr6_4:73583247-73583266 | None:intergenic | 25.0% |
| ! | ATATAAGAAGATGAAGAATG+TGG | + | chr6_4:73583280-73583299 | None:intergenic | 25.0% |
| !! | TTTTTAAATCGTGGTTATTC+GGG | - | chr6_4:73584024-73584043 | Msa0996010:intron | 25.0% |
| !! | TGGTTAGTATCATTTTATTG+CGG | - | chr6_4:73584067-73584086 | Msa0996010:intron | 25.0% |
| !!! | AGGGTTTTGATTTTAAATCA+TGG | - | chr6_4:73584173-73584192 | Msa0996010:intron | 25.0% |
| !!! | GGGTTTTGATTTTAAATCAT+GGG | - | chr6_4:73584174-73584193 | Msa0996010:intron | 25.0% |
| !!! | ATGTTTTAAAATATCGGATC+CGG | - | chr6_4:73584410-73584429 | Msa0996010:intron | 25.0% |
| ! | CAAATCATGATGTTAAAACA+TGG | - | chr6_4:73584522-73584541 | Msa0996010:CDS | 25.0% |
| ! | AAATAAAGAAAGACACAAAG+CGG | + | chr6_4:73584644-73584663 | None:intergenic | 25.0% |
| !! | TTTCTTTATTTGAGAATGAG+TGG | - | chr6_4:73584653-73584672 | Msa0996010:intron | 25.0% |
| ! | CGTAGCTAAATAAAAAAACA+TGG | - | chr6_4:73584690-73584709 | Msa0996010:CDS | 25.0% |
| !! | TCAATATTTAACTTTGGAAG+AGG | - | chr6_4:73584826-73584845 | Msa0996010:CDS | 25.0% |
| !! | ATTATGATGATTTGCCTATT+TGG | - | chr6_4:73585109-73585128 | Msa0996010:intron | 25.0% |
| !! | TTATGATGATTTGCCTATTT+GGG | - | chr6_4:73585110-73585129 | Msa0996010:intron | 25.0% |
| !! | AGTTTTTCTATACTGTGAAA+TGG | - | chr6_4:73585307-73585326 | Msa0996010:intron | 25.0% |
| ! | ACTTGACAAAATCATTCTTA+AGG | + | chr6_4:73585488-73585507 | None:intergenic | 25.0% |
| ! | AGCAAAAGAATAAATAACAG+AGG | + | chr6_4:73585571-73585590 | None:intergenic | 25.0% |
| ! | AAGCAAAATGTAAGAAATAG+AGG | + | chr6_4:73586183-73586202 | None:intergenic | 25.0% |
| ! | TACTAGTAATACCTAACTAA+GGG | + | chr6_4:73586696-73586715 | None:intergenic | 25.0% |
| ! | ATACTAGTAATACCTAACTA+AGG | + | chr6_4:73586697-73586716 | None:intergenic | 25.0% |
| !! | GAGTGTGTTGATAATAAAGA+GGG | + | chr6_4:73583258-73583277 | None:intergenic | 30.0% |
| TTGTTATGTGAAAGTGAAGA+GGG | + | chr6_4:73583329-73583348 | None:intergenic | 30.0% | |
| TATTACCAACCAATCTTCAA+TGG | - | chr6_4:73583376-73583395 | Msa0996010:CDS | 30.0% | |
| TCAGATAAACGTTACAAAGA+AGG | - | chr6_4:73583476-73583495 | Msa0996010:CDS | 30.0% | |
| AAGTACCTTGGATTATGAAA+AGG | + | chr6_4:73583536-73583555 | None:intergenic | 30.0% | |
| TGCTTCAATTCTCTTATTAG+TGG | - | chr6_4:73583978-73583997 | Msa0996010:CDS | 30.0% | |
| ! | TTTTAAATCGTGGTTATTCG+GGG | - | chr6_4:73584025-73584044 | Msa0996010:intron | 30.0% |
| ! | GGTTAGTATCATTTTATTGC+GGG | - | chr6_4:73584068-73584087 | Msa0996010:intron | 30.0% |
| !! | ATGTTGCTATTGTTTTGTTG+CGG | - | chr6_4:73584198-73584217 | Msa0996010:intron | 30.0% |
| TTAGCTAACTAAATGGTATC+CGG | + | chr6_4:73584432-73584451 | None:intergenic | 30.0% | |
| AATAAAGAAAGACACAAAGC+GGG | + | chr6_4:73584643-73584662 | None:intergenic | 30.0% | |
| TGGTAATTTGGCAAGTAAAT+TGG | + | chr6_4:73584774-73584793 | None:intergenic | 30.0% | |
| ATTGATAAGAAAACCAGTTG+TGG | + | chr6_4:73584794-73584813 | None:intergenic | 30.0% | |
| !! | AAAGAGAAGAAAGAAGCATT+GGG | - | chr6_4:73584931-73584950 | Msa0996010:CDS | 30.0% |
| ! | TATGATGATTTGCCTATTTG+GGG | - | chr6_4:73585111-73585130 | Msa0996010:intron | 30.0% |
| GGTAGTATCTATAATCACTA+GGG | + | chr6_4:73585170-73585189 | None:intergenic | 30.0% | |
| AGGTAGTATCTATAATCACT+AGG | + | chr6_4:73585171-73585190 | None:intergenic | 30.0% | |
| TTTCTATACTGTGAAATGGA+AGG | - | chr6_4:73585311-73585330 | Msa0996010:intron | 30.0% | |
| ! | AATTGATAATCGAAAACCAG+TGG | + | chr6_4:73585410-73585429 | None:intergenic | 30.0% |
| GCAAATACAGATTTGAACTT+GGG | + | chr6_4:73585710-73585729 | None:intergenic | 30.0% | |
| TGCAAATACAGATTTGAACT+TGG | + | chr6_4:73585711-73585730 | None:intergenic | 30.0% | |
| ! | TTTATGCATTTTGTGCAGTA+CGG | - | chr6_4:73585867-73585886 | Msa0996010:intron | 30.0% |
| TACGGTGTTCATATTCATAT+TGG | - | chr6_4:73585885-73585904 | Msa0996010:intron | 30.0% | |
| ATATTCATATTGGCACTTGT+TGG | - | chr6_4:73585895-73585914 | Msa0996010:intron | 30.0% | |
| TTGTCGTTATAGTTCTCATA+TGG | - | chr6_4:73586259-73586278 | Msa0996010:intron | 30.0% | |
| ATTATATATTTGCCAGTGTC+TGG | - | chr6_4:73586472-73586491 | Msa0996010:CDS | 30.0% | |
| TTATATATTTGCCAGTGTCT+GGG | - | chr6_4:73586473-73586492 | Msa0996010:CDS | 30.0% | |
| TGTAGATTGTGTAAATTCTG+TGG | + | chr6_4:73586500-73586519 | None:intergenic | 30.0% | |
| ACTAGTAATACCTAACTAAG+GGG | + | chr6_4:73586695-73586714 | None:intergenic | 30.0% | |
| CACCAAACATAAGATTGAAG+CGG | - | chr6_4:73583185-73583204 | Msa0996010:three_prime_UTR | 35.0% | |
| AAAAGAAGGAAGGTGAAGAT+GGG | + | chr6_4:73583233-73583252 | None:intergenic | 35.0% | |
| AAAAAGAAGGAAGGTGAAGA+TGG | + | chr6_4:73583234-73583253 | None:intergenic | 35.0% | |
| AAAGAGGGAAAAAAGAAGGA+AGG | + | chr6_4:73583243-73583262 | None:intergenic | 35.0% | |
| !! | GGAGTGTGTTGATAATAAAG+AGG | + | chr6_4:73583259-73583278 | None:intergenic | 35.0% |
| GGTTGAATAGAAAAAAGAGG+GGG | + | chr6_4:73583306-73583325 | None:intergenic | 35.0% | |
| GGGTTGAATAGAAAAAAGAG+GGG | + | chr6_4:73583307-73583326 | None:intergenic | 35.0% | |
| GGGGTTGAATAGAAAAAAGA+GGG | + | chr6_4:73583308-73583327 | None:intergenic | 35.0% | |
| TGTTATGTGAAAGTGAAGAG+GGG | + | chr6_4:73583328-73583347 | None:intergenic | 35.0% | |
| GTTGTTATGTGAAAGTGAAG+AGG | + | chr6_4:73583330-73583349 | None:intergenic | 35.0% | |
| ATCTGATGAATCAGATCTGA+CGG | + | chr6_4:73583462-73583481 | None:intergenic | 35.0% | |
| ! | TTGGTCCTTTTCATAATCCA+AGG | - | chr6_4:73583528-73583547 | Msa0996010:CDS | 35.0% |
| TGTAATCAAATGTGTCGTGT+CGG | - | chr6_4:73583788-73583807 | Msa0996010:intron | 35.0% | |
| ! | TGATTTTCAGTGAGACGTAT+CGG | - | chr6_4:73583916-73583935 | Msa0996010:CDS | 35.0% |
| AACCAACCTGGTATACAAAA+TGG | + | chr6_4:73583954-73583973 | None:intergenic | 35.0% | |
| TTGAAGCAAAAAAACCAACC+TGG | + | chr6_4:73583966-73583985 | None:intergenic | 35.0% | |
| ! | CATTTTATTGCGGGAAATTG+CGG | - | chr6_4:73584077-73584096 | Msa0996010:intron | 35.0% |
| TGATCTTGAACATCACATCA+AGG | + | chr6_4:73584311-73584330 | None:intergenic | 35.0% | |
| GCAGGATTTAGCTAACTAAA+TGG | + | chr6_4:73584439-73584458 | None:intergenic | 35.0% | |
| CGTATTCCAACTTCACATAA+TGG | - | chr6_4:73584495-73584514 | Msa0996010:CDS | 35.0% | |
| TGAAGTCCATTATGTGAAGT+TGG | + | chr6_4:73584504-73584523 | None:intergenic | 35.0% | |
| ! | GGATATTTTATGTGGAATCC+CGG | - | chr6_4:73584589-73584608 | Msa0996010:CDS | 35.0% |
| ! | GATATTTTATGTGGAATCCC+GGG | - | chr6_4:73584590-73584609 | Msa0996010:CDS | 35.0% |
| ATAAAGAAAGACACAAAGCG+GGG | + | chr6_4:73584642-73584661 | None:intergenic | 35.0% | |
| TTAGCTACGTATTAGCATAG+TGG | + | chr6_4:73584679-73584698 | None:intergenic | 35.0% | |
| GAAAACCAGTTGTGGTAATT+TGG | + | chr6_4:73584786-73584805 | None:intergenic | 35.0% | |
| ! | GAAAGAGAAGAAAGAAGCAT+TGG | - | chr6_4:73584930-73584949 | Msa0996010:CDS | 35.0% |
| !!! | TTTTGGAATTCGAGCTGATA+AGG | + | chr6_4:73584991-73585010 | None:intergenic | 35.0% |
| TTATCAGCTCGAATTCCAAA+AGG | - | chr6_4:73584990-73585009 | Msa0996010:intron | 35.0% | |
| GACACTTACAAAAGAAGAAG+TGG | - | chr6_4:73585041-73585060 | Msa0996010:intron | 35.0% | |
| ! | AAGAAGAAGTGGCGAATTTT+CGG | - | chr6_4:73585052-73585071 | Msa0996010:intron | 35.0% |
| !! | TTTCATAGGGAAGGTTGATA+AGG | - | chr6_4:73585134-73585153 | Msa0996010:intron | 35.0% |
| CAAAATGGATGTGCTTGTAA+AGG | + | chr6_4:73585191-73585210 | None:intergenic | 35.0% | |
| TATTGAGATCAATGTGCGAA+CGG | - | chr6_4:73585236-73585255 | Msa0996010:intron | 35.0% | |
| ! | TCCTTGTTTGACTTCTAAAC+AGG | - | chr6_4:73585606-73585625 | Msa0996010:intron | 35.0% |
| ACCTGTTTAGAAGTCAAACA+AGG | + | chr6_4:73585610-73585629 | None:intergenic | 35.0% | |
| ! | TATTTTATCCGTACAACCGA+GGG | - | chr6_4:73585920-73585939 | Msa0996010:intron | 35.0% |
| GTTATATATGCACTCACTTC+AGG | - | chr6_4:73585963-73585982 | Msa0996010:intron | 35.0% | |
| TACCTCATTCTATTGTCAAC+TGG | - | chr6_4:73586004-73586023 | Msa0996010:intron | 35.0% | |
| TTCCAGTTGACAATAGAATG+AGG | + | chr6_4:73586009-73586028 | None:intergenic | 35.0% | |
| TCATTCTATTGTCAACTGGA+AGG | - | chr6_4:73586008-73586027 | Msa0996010:intron | 35.0% | |
| !! | TATGCATTTTGGTCCAGTAT+CGG | - | chr6_4:73586058-73586077 | Msa0996010:intron | 35.0% |
| GTTCGGAATTTACTATTGAC+CGG | - | chr6_4:73586141-73586160 | Msa0996010:intron | 35.0% | |
| ! | TCGATGTAAATAGCACTGAA+AGG | + | chr6_4:73586447-73586466 | None:intergenic | 35.0% |
| TATATATTTGCCAGTGTCTG+GGG | - | chr6_4:73586474-73586493 | Msa0996010:CDS | 35.0% | |
| TGTTACTGCTTTCATTACTG+TGG | - | chr6_4:73586554-73586573 | Msa0996010:five_prime_UTR | 35.0% | |
| CTTTCTTGCACCAATTTCTA+TGG | - | chr6_4:73586654-73586673 | Msa0996010:five_prime_UTR | 35.0% | |
| TGTTTATAGTCCCCTTAGTT+AGG | - | chr6_4:73586682-73586701 | Msa0996010:five_prime_UTR | 35.0% | |
| CACCGCTTCAATCTTATGTT+TGG | + | chr6_4:73583190-73583209 | None:intergenic | 40.0% | |
| GGGGGTTGAATAGAAAAAAG+AGG | + | chr6_4:73583309-73583328 | None:intergenic | 40.0% | |
| GTTATGTGAAAGTGAAGAGG+GGG | + | chr6_4:73583327-73583346 | None:intergenic | 40.0% | |
| TCATCTTCGCCATTGAAGAT+TGG | + | chr6_4:73583388-73583407 | None:intergenic | 40.0% | |
| AAGAAGGCGAGGATGAATAA+TGG | + | chr6_4:73583413-73583432 | None:intergenic | 40.0% | |
| GAGAGAAGAAATGGAGAAGA+AGG | + | chr6_4:73583429-73583448 | None:intergenic | 40.0% | |
| GGAGATGAAGAGAGAAGAAA+TGG | + | chr6_4:73583438-73583457 | None:intergenic | 40.0% | |
| !! | TAATATACGAAGCACCGACA+CGG | - | chr6_4:73583706-73583725 | Msa0996010:CDS | 40.0% |
| !!! | GATCTGCCATTTTGTATACC+AGG | - | chr6_4:73583945-73583964 | Msa0996010:CDS | 40.0% |
| !!! | TGCCATTTTGTATACCAGGT+TGG | - | chr6_4:73583949-73583968 | Msa0996010:CDS | 40.0% |
| GGGAAATTGCGGTTAAATAC+AGG | - | chr6_4:73584088-73584107 | Msa0996010:intron | 40.0% | |
| !! | TGTTTTGTTGCGGAGAATTG+CGG | - | chr6_4:73584208-73584227 | Msa0996010:intron | 40.0% |
| CGGAGAATTGCGGTTAAATA+TGG | - | chr6_4:73584218-73584237 | Msa0996010:intron | 40.0% | |
| TGCTGATGCAATTGTAGTTG+TGG | - | chr6_4:73584245-73584264 | Msa0996010:intron | 40.0% | |
| TTGTAGTTGTGGAGACATCA+TGG | - | chr6_4:73584256-73584275 | Msa0996010:intron | 40.0% | |
| TCATGTAACGGTGTAAATGC+AGG | + | chr6_4:73584457-73584476 | None:intergenic | 40.0% | |
| ! | GGCTGTGAGGATATTTTATG+TGG | - | chr6_4:73584581-73584600 | Msa0996010:CDS | 40.0% |
| TAAAGAAAGACACAAAGCGG+GGG | + | chr6_4:73584641-73584660 | None:intergenic | 40.0% | |
| CTAGACCATCCAATCTTGAT+CGG | + | chr6_4:73584721-73584740 | None:intergenic | 40.0% | |
| ACTTGCCAAATTACCACAAC+TGG | - | chr6_4:73584778-73584797 | Msa0996010:intron | 40.0% | |
| !! | CATTGGGTGAAGTGTTGAAT+GGG | - | chr6_4:73584947-73584966 | Msa0996010:CDS | 40.0% |
| !! | ATTGGGTGAAGTGTTGAATG+GGG | - | chr6_4:73584948-73584967 | Msa0996010:CDS | 40.0% |
| ! | TTGCCTATTTGGGGTTTCAT+AGG | - | chr6_4:73585120-73585139 | Msa0996010:intron | 40.0% |
| ! | TGCCTATTTGGGGTTTCATA+GGG | - | chr6_4:73585121-73585140 | Msa0996010:intron | 40.0% |
| TTCCCTATGAAACCCCAAAT+AGG | + | chr6_4:73585126-73585145 | None:intergenic | 40.0% | |
| ! | TATTTGGGGTTTCATAGGGA+AGG | - | chr6_4:73585125-73585144 | Msa0996010:intron | 40.0% |
| !! | ATAGGGAAGGTTGATAAGGA+GGG | - | chr6_4:73585138-73585157 | Msa0996010:intron | 40.0% |
| ! | CAGTGGATTTCCAAATGATG+GGG | + | chr6_4:73585393-73585412 | None:intergenic | 40.0% |
| ! | CCAGTGGATTTCCAAATGAT+GGG | + | chr6_4:73585394-73585413 | None:intergenic | 40.0% |
| ! | ACCAGTGGATTTCCAAATGA+TGG | + | chr6_4:73585395-73585414 | None:intergenic | 40.0% |
| TTGCAAGAAAACCAGTCAAG+AGG | + | chr6_4:73585449-73585468 | None:intergenic | 40.0% | |
| AAACAGGTATGCACATGATG+AGG | - | chr6_4:73585622-73585641 | Msa0996010:intron | 40.0% | |
| ! | ACATCCACGGTGATGTTTTT+AGG | - | chr6_4:73585681-73585700 | Msa0996010:intron | 40.0% |
| GAAACCTAAAAACATCACCG+TGG | + | chr6_4:73585688-73585707 | None:intergenic | 40.0% | |
| AACTCACAGGGTAAACAGTT+GGG | + | chr6_4:73585753-73585772 | None:intergenic | 40.0% | |
| AAACTCACAGGGTAAACAGT+TGG | + | chr6_4:73585754-73585773 | None:intergenic | 40.0% | |
| TTTACCCTGTGAGTTTCTTC+TGG | - | chr6_4:73585758-73585777 | Msa0996010:intron | 40.0% | |
| ! | GTATTTTATCCGTACAACCG+AGG | - | chr6_4:73585919-73585938 | Msa0996010:intron | 40.0% |
| TCAACTGGAAGGAACAAACT+GGG | - | chr6_4:73586019-73586038 | Msa0996010:intron | 40.0% | |
| CATGCAAATCTAACCGATAC+TGG | + | chr6_4:73586074-73586093 | None:intergenic | 40.0% | |
| CTTTGTCCGTTTATCATGAC+AGG | - | chr6_4:73586119-73586138 | Msa0996010:intron | 40.0% | |
| TCCGTTTATCATGACAGGTT+CGG | - | chr6_4:73586124-73586143 | Msa0996010:intron | 40.0% | |
| TCCGAACCTGTCATGATAAA+CGG | + | chr6_4:73586128-73586147 | None:intergenic | 40.0% | |
| TAACGACAATTGTGCCGAAT+GGG | + | chr6_4:73586248-73586267 | None:intergenic | 40.0% | |
| ATAACGACAATTGTGCCGAA+TGG | + | chr6_4:73586249-73586268 | None:intergenic | 40.0% | |
| TACGTCTCCTCTACTTGTAT+TGG | - | chr6_4:73586290-73586309 | Msa0996010:intron | 40.0% | |
| ACGTCTCCTCTACTTGTATT+GGG | - | chr6_4:73586291-73586310 | Msa0996010:intron | 40.0% | |
| TCCGCACAACTAAATATCCA+AGG | - | chr6_4:73586358-73586377 | Msa0996010:CDS | 40.0% | |
| CCCTTGGATATTTAGTTGTG+CGG | + | chr6_4:73586362-73586381 | None:intergenic | 40.0% | |
| CCGCACAACTAAATATCCAA+GGG | - | chr6_4:73586359-73586378 | Msa0996010:CDS | 40.0% | |
| TTGCTGCTGAAGATCATGAA+TGG | - | chr6_4:73586595-73586614 | Msa0996010:five_prime_UTR | 40.0% | |
| CTTCGCCATTGAAGATTGGT+TGG | + | chr6_4:73583384-73583403 | None:intergenic | 45.0% | |
| AAGAAATGGAGAAGAAGGCG+AGG | + | chr6_4:73583424-73583443 | None:intergenic | 45.0% | |
| TGATGAATCAGATCTGACGG+TGG | + | chr6_4:73583459-73583478 | None:intergenic | 45.0% | |
| CCAACTTTGTTAGCGAAGAG+AGG | + | chr6_4:73583512-73583531 | None:intergenic | 45.0% | |
| CCTCTCTTCGCTAACAAAGT+TGG | - | chr6_4:73583509-73583528 | Msa0996010:CDS | 45.0% | |
| !! | AACGGATCGAAGAAGTACCT+TGG | + | chr6_4:73583548-73583567 | None:intergenic | 45.0% |
| CGTGGAATGCACGTGAATAA+CGG | + | chr6_4:73583566-73583585 | None:intergenic | 45.0% | |
| ! | ATCAAAGGCGTATCCGATGT+TGG | + | chr6_4:73583817-73583836 | None:intergenic | 45.0% |
| ACGCCTTTGATCAGATGTGT+CGG | - | chr6_4:73583826-73583845 | Msa0996010:intron | 45.0% | |
| ACACCGACACATCTGATCAA+AGG | + | chr6_4:73583832-73583851 | None:intergenic | 45.0% | |
| ACTGTTGCATCCTAGTGGTT+TGG | - | chr6_4:73584560-73584579 | Msa0996010:CDS | 45.0% | |
| AAAGAAAGACACAAAGCGGG+GGG | + | chr6_4:73584640-73584659 | None:intergenic | 45.0% | |
| ATGGACCATCCGATCAAGAT+TGG | - | chr6_4:73584709-73584728 | Msa0996010:CDS | 45.0% | |
| ACCATCCGATCAAGATTGGA+TGG | - | chr6_4:73584713-73584732 | Msa0996010:CDS | 45.0% | |
| ACCATCCAATCTTGATCGGA+TGG | + | chr6_4:73584717-73584736 | None:intergenic | 45.0% | |
| !! | GCATTGGGTGAAGTGTTGAA+TGG | - | chr6_4:73584946-73584965 | Msa0996010:CDS | 45.0% |
| !! | GTGAAGTGTTGAATGGGGAT+AGG | - | chr6_4:73584953-73584972 | Msa0996010:CDS | 45.0% |
| ! | AGTGTTGAATGGGGATAGGT+TGG | - | chr6_4:73584957-73584976 | Msa0996010:intron | 45.0% |
| GCTCGAATTCCAAAAGGACA+AGG | - | chr6_4:73584996-73585015 | Msa0996010:intron | 45.0% | |
| ! | ACACAGAGTCCTTGTCCTTT+TGG | + | chr6_4:73585008-73585027 | None:intergenic | 45.0% |
| AAAGGACAAGGACTCTGTGT+CGG | - | chr6_4:73585008-73585027 | Msa0996010:intron | 45.0% | |
| GTAGTAGTCCTTACGAACAG+CGG | + | chr6_4:73585079-73585098 | None:intergenic | 45.0% | |
| !! | CATAGGGAAGGTTGATAAGG+AGG | - | chr6_4:73585137-73585156 | Msa0996010:intron | 45.0% |
| !! | TAGGGAAGGTTGATAAGGAG+GGG | - | chr6_4:73585139-73585158 | Msa0996010:intron | 45.0% |
| !! | GTAACATCCACAAGGGCATT+TGG | + | chr6_4:73585264-73585283 | None:intergenic | 45.0% |
| GTCCTCTGTAACATCCACAA+GGG | + | chr6_4:73585271-73585290 | None:intergenic | 45.0% | |
| TGTCCTCTGTAACATCCACA+AGG | + | chr6_4:73585272-73585291 | None:intergenic | 45.0% | |
| CCCATCATTTGGAAATCCAC+TGG | - | chr6_4:73585391-73585410 | Msa0996010:intron | 45.0% | |
| CAAGAAAACCAGTCAAGAGG+AGG | + | chr6_4:73585446-73585465 | None:intergenic | 45.0% | |
| ACTGGCTGGAAATACATCCA+CGG | - | chr6_4:73585668-73585687 | Msa0996010:intron | 45.0% | |
| ATGGCCAGAAGAAACTCACA+GGG | + | chr6_4:73585765-73585784 | None:intergenic | 45.0% | |
| AATGGCCAGAAGAAACTCAC+AGG | + | chr6_4:73585766-73585785 | None:intergenic | 45.0% | |
| GTCAACTGGAAGGAACAAAC+TGG | - | chr6_4:73586018-73586037 | Msa0996010:intron | 45.0% | |
| GAAATAGAGGCCCACAGAAA+AGG | + | chr6_4:73586170-73586189 | None:intergenic | 45.0% | |
| TCTCCTCTACTTGTATTGGG+AGG | - | chr6_4:73586294-73586313 | Msa0996010:intron | 45.0% | |
| CTCCTCTACTTGTATTGGGA+GGG | - | chr6_4:73586295-73586314 | Msa0996010:intron | 45.0% | |
| ATCCCTCCCAATACAAGTAG+AGG | + | chr6_4:73586300-73586319 | None:intergenic | 45.0% | |
| TTGTATTGGGAGGGATTGCT+GGG | - | chr6_4:73586304-73586323 | Msa0996010:intron | 45.0% | |
| GGATATTTAGTTGTGCGGAC+TGG | + | chr6_4:73586357-73586376 | None:intergenic | 45.0% | |
| TTCCTCCTTTGCCATGGTAT+CGG | - | chr6_4:73586385-73586404 | Msa0996010:CDS | 45.0% | |
| AGCAATTCCTCAGATGGCAA+TGG | - | chr6_4:73586410-73586429 | Msa0996010:CDS | 45.0% | |
| CTGCTGAAGATCATGAATGG+TGG | - | chr6_4:73586598-73586617 | Msa0996010:five_prime_UTR | 45.0% | |
| CTGAAGATCATGAATGGTGG+TGG | - | chr6_4:73586601-73586620 | Msa0996010:five_prime_UTR | 45.0% | |
| !! | AAGATCATGAATGGTGGTGG+AGG | - | chr6_4:73586604-73586623 | Msa0996010:five_prime_UTR | 45.0% |
| ACGAAAACAGATCCAGCACG+TGG | + | chr6_4:73583584-73583603 | None:intergenic | 50.0% | |
| TCCTCACTGTTGCATCCTAG+TGG | - | chr6_4:73584555-73584574 | Msa0996010:CDS | 50.0% | |
| ACCACTAGGATGCAACAGTG+AGG | + | chr6_4:73584559-73584578 | None:intergenic | 50.0% | |
| ! | ATCCTAGTGGTTTGGCTGTG+AGG | - | chr6_4:73584568-73584587 | Msa0996010:CDS | 50.0% |
| ATCCTCACAGCCAAACCACT+AGG | + | chr6_4:73584573-73584592 | None:intergenic | 50.0% | |
| AAGAAAGACACAAAGCGGGG+GGG | + | chr6_4:73584639-73584658 | None:intergenic | 50.0% | |
| ! | TTTTCGGTCCGCTGTTCGTA+AGG | - | chr6_4:73585068-73585087 | Msa0996010:intron | 50.0% |
| AACGGATCCAAATGCCCTTG+TGG | - | chr6_4:73585254-73585273 | Msa0996010:intron | 50.0% | |
| TGCCCTTGTGGATGTTACAG+AGG | - | chr6_4:73585266-73585285 | Msa0996010:intron | 50.0% | |
| CTAACACTCCCTTCGAGAAG+CGG | - | chr6_4:73585337-73585356 | Msa0996010:intron | 50.0% | |
| TTGTCCATCCGCTTCTCGAA+GGG | + | chr6_4:73585348-73585367 | None:intergenic | 50.0% | |
| ! | AAATGATGGGGTAGCGAGGA+CGG | + | chr6_4:73585381-73585400 | None:intergenic | 50.0% |
| ! | TTCCAAATGATGGGGTAGCG+AGG | + | chr6_4:73585385-73585404 | None:intergenic | 50.0% |
| ACATGATGAGGAGACTGCAG+AGG | - | chr6_4:73585634-73585653 | Msa0996010:intron | 50.0% | |
| TCTGTATTTGCAGCCGCTCT+TGG | - | chr6_4:73585719-73585738 | Msa0996010:intron | 50.0% | |
| TTGGGTACCAGATCCAAGAG+CGG | + | chr6_4:73585735-73585754 | None:intergenic | 50.0% | |
| GAATAGAGCCCTCGGTTGTA+CGG | + | chr6_4:73585931-73585950 | None:intergenic | 50.0% | |
| AGTGCAGTGAATAGAGCCCT+CGG | + | chr6_4:73585939-73585958 | None:intergenic | 50.0% | |
| GCACTCACTTCAGGAATTGC+TGG | - | chr6_4:73585972-73585991 | Msa0996010:intron | 50.0% | |
| ! | TTGACCGGATGCCTTTTCTG+TGG | - | chr6_4:73586156-73586175 | Msa0996010:intron | 50.0% |
| ! | TGACCGGATGCCTTTTCTGT+GGG | - | chr6_4:73586157-73586176 | Msa0996010:intron | 50.0% |
| AATTGTGCCGAATGGGAGAG+CGG | + | chr6_4:73586241-73586260 | None:intergenic | 50.0% | |
| CTTGTATTGGGAGGGATTGC+TGG | - | chr6_4:73586303-73586322 | Msa0996010:intron | 50.0% | |
| GATTGCTGGGAAGAACAGCA+AGG | - | chr6_4:73586317-73586336 | Msa0996010:intron | 50.0% | |
| TCCTCCTTTGCCATGGTATC+GGG | - | chr6_4:73586386-73586405 | Msa0996010:CDS | 50.0% | |
| ATTCCTCAGATGGCAATGGC+AGG | - | chr6_4:73586414-73586433 | Msa0996010:CDS | 50.0% | |
| AATCCTGCCATTGCCATCTG+AGG | + | chr6_4:73586420-73586439 | None:intergenic | 50.0% | |
| CATGATCTTCAGCAGCAAGC+TGG | + | chr6_4:73586593-73586612 | None:intergenic | 50.0% | |
| TTCACGTGCATTCCACGTGC+TGG | - | chr6_4:73583569-73583588 | Msa0996010:CDS | 55.0% | |
| TCCAGTGTCTGTGTCCGTGT+CGG | + | chr6_4:73583723-73583742 | None:intergenic | 55.0% | |
| ! | GTCGTGTCGGTGTCCAACAT+CGG | - | chr6_4:73583801-73583820 | Msa0996010:intron | 55.0% |
| TGGTGACTCAGGTTCGAACC+CGG | + | chr6_4:73584611-73584630 | None:intergenic | 55.0% | |
| CTTGTCCATCCGCTTCTCGA+AGG | + | chr6_4:73585349-73585368 | None:intergenic | 55.0% | |
| GTCCTCGCTACCCCATCATT+TGG | - | chr6_4:73585380-73585399 | Msa0996010:intron | 55.0% | |
| GTCACAGTCCTCCTCTTGAC+TGG | - | chr6_4:73585435-73585454 | Msa0996010:intron | 55.0% | |
| TGAGGAGACTGCAGAGGATC+AGG | - | chr6_4:73585640-73585659 | Msa0996010:intron | 55.0% | |
| GCAGAGGATCAGGAAGAGAC+TGG | - | chr6_4:73585650-73585669 | Msa0996010:intron | 55.0% | |
| AGGATCAGGAAGAGACTGGC+TGG | - | chr6_4:73585654-73585673 | Msa0996010:intron | 55.0% | |
| TTTGCAGCCGCTCTTGGATC+TGG | - | chr6_4:73585725-73585744 | Msa0996010:intron | 55.0% | |
| !! | AGGCCCACAGAAAAGGCATC+CGG | + | chr6_4:73586163-73586182 | None:intergenic | 55.0% |
| !! | TAGTTGTGCGGACTGGAGCT+TGG | + | chr6_4:73586350-73586369 | None:intergenic | 55.0% |
| GGCAAAGGAGGAATCTCCCT+TGG | + | chr6_4:73586378-73586397 | None:intergenic | 55.0% | |
| GGGAGATTCCTCCTTTGCCA+TGG | - | chr6_4:73586379-73586398 | Msa0996010:CDS | 55.0% | |
| CCTCCTTTGCCATGGTATCG+GGG | - | chr6_4:73586387-73586406 | Msa0996010:CDS | 55.0% | |
| GGAATTGCTCCCCGATACCA+TGG | + | chr6_4:73586399-73586418 | None:intergenic | 55.0% | |
| TCGGGGAGCAATTCCTCAGA+TGG | - | chr6_4:73586404-73586423 | Msa0996010:CDS | 55.0% | |
| AATTCTGTGGCCCCAGACAC+TGG | + | chr6_4:73586487-73586506 | None:intergenic | 55.0% | |
| ACCGACACGGACACAGACAC+TGG | - | chr6_4:73583719-73583738 | Msa0996010:CDS | 60.0% | |
| GGTGACTCAGGTTCGAACCC+GGG | + | chr6_4:73584610-73584629 | None:intergenic | 60.0% | |
| GGGGGGAAATGTGGTGACTC+AGG | + | chr6_4:73584622-73584641 | None:intergenic | 60.0% | |
| CACAAAGCGGGGGGGAAATG+TGG | + | chr6_4:73584631-73584650 | None:intergenic | 60.0% | |
| CACTCCCTTCGAGAAGCGGA+TGG | - | chr6_4:73585341-73585360 | Msa0996010:intron | 60.0% | |
| GCTACTGCCGCTCTCCCATT+CGG | - | chr6_4:73586231-73586250 | Msa0996010:intron | 60.0% | |
| CCCCGATACCATGGCAAAGG+AGG | + | chr6_4:73586390-73586409 | None:intergenic | 60.0% | |
| GCTCCCCGATACCATGGCAA+AGG | + | chr6_4:73586393-73586412 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 73583177 | 73586719 | 73583177 | ID=Msa0996010;Name=Msa0996010 |
| chr6_4 | mRNA | 73583177 | 73586719 | 73583177 | ID=Msa0996010-mRNA-1;Parent=Msa0996010;Name=Msa0996010-mRNA-1;_AED=0.10;_eAED=0.10;_QI=218|0.5|0.57|1|0.5|0.57|7|69|448 |
| chr6_4 | exon | 73583177 | 73583755 | 73583177 | ID=Msa0996010-mRNA-1:exon:13665;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73583856 | 73584011 | 73583856 | ID=Msa0996010-mRNA-1:exon:13664;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73584414 | 73584653 | 73584414 | ID=Msa0996010-mRNA-1:exon:13663;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73584663 | 73584749 | 73584663 | ID=Msa0996010-mRNA-1:exon:13662;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73584816 | 73584973 | 73584816 | ID=Msa0996010-mRNA-1:exon:13661;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73585930 | 73585970 | 73585930 | ID=Msa0996010-mRNA-1:exon:13660;Parent=Msa0996010-mRNA-1 |
| chr6_4 | exon | 73586347 | 73586719 | 73586347 | ID=Msa0996010-mRNA-1:exon:13659;Parent=Msa0996010-mRNA-1 |
| chr6_4 | five_prime_UTR | 73586502 | 73586719 | 73586502 | ID=Msa0996010-mRNA-1:five_prime_utr;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73586347 | 73586501 | 73586347 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73585930 | 73585970 | 73585930 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73584816 | 73584973 | 73584816 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73584663 | 73584749 | 73584663 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73584414 | 73584653 | 73584414 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73583856 | 73584011 | 73583856 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | CDS | 73583246 | 73583755 | 73583246 | ID=Msa0996010-mRNA-1:cds;Parent=Msa0996010-mRNA-1 |
| chr6_4 | three_prime_UTR | 73583177 | 73583245 | 73583177 | ID=Msa0996010-mRNA-1:three_prime_utr;Parent=Msa0996010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
