Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002110 | XP_013469813.1 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 5.80e-139 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002110 | sp|Q1G2Y5|LTG21_ARATH | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.70e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002110 | A0A072VQE2 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 2.77e-139 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087080 | Msa1002110 | 0.942540 | 6.000981e-102 | -8.615850e-47 |
| Msa0088080 | Msa1002110 | 0.886308 | 3.828748e-72 | -8.615850e-47 |
| Msa0179310 | Msa1002110 | 0.956258 | 4.509520e-114 | -8.615850e-47 |
| Msa0446170 | Msa1002110 | 0.813455 | 2.537523e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002110 | MtrunA17_Chr1g0205171 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 5.34e-143 | 398 |
| Msa1002110 | MtrunA17_Chr5g0394991 | 56.250 | 224 | 86 | 5 | 1 | 224 | 1 | 212 | 2.80e-67 | 206 |
| Msa1002110 | MtrunA17_Chr1g0185311 | 55.660 | 106 | 43 | 4 | 26 | 128 | 26 | 130 | 2.40e-31 | 113 |
| Msa1002110 | MtrunA17_Chr7g0260071 | 46.875 | 128 | 56 | 4 | 12 | 132 | 17 | 139 | 2.99e-22 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1002110 | AT1G05450.2 | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.72e-46 | 153 |
| Msa1002110 | AT3G22620.1 | 44.690 | 226 | 100 | 8 | 1 | 224 | 1 | 203 | 7.93e-43 | 144 |
| Msa1002110 | AT2G48140.1 | 48.428 | 159 | 70 | 6 | 12 | 159 | 7 | 164 | 2.60e-36 | 127 |
| Msa1002110 | AT2G48140.2 | 53.913 | 115 | 51 | 2 | 12 | 125 | 7 | 120 | 2.46e-35 | 122 |
Find 76 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGAGAAGTTGTAAAAT+TGG | 0.197802 | 6_4:+87341632 | None:intergenic |
| CACTCTCTTCACACCTTGTA+TGG | 0.248146 | 6_4:-87341460 | Msa1002110:CDS |
| AGAAGTTGTAAAATTGGTTT+TGG | 0.261052 | 6_4:+87341638 | None:intergenic |
| AATCCATGCCACTACTTGTT+AGG | 0.277189 | 6_4:+87341370 | None:intergenic |
| AAGAGAGTGCTTATTGTAGA+AGG | 0.288971 | 6_4:+87341474 | None:intergenic |
| ATAGCTAAGGTTCTATTGAT+TGG | 0.350447 | 6_4:+87341306 | None:intergenic |
| CATAGCAACAATTTATATAT+AGG | 0.352461 | 6_4:+87340371 | None:intergenic |
| CTTACAGGTAGTAGTGCTAA+TGG | 0.358055 | 6_4:-87341432 | Msa1002110:CDS |
| GGAGATGAAGTTGGTGAAGC+TGG | 0.379930 | 6_4:+87340624 | None:intergenic |
| GTCATTAATATTGTCATGGC+TGG | 0.381229 | 6_4:-87341531 | Msa1002110:CDS |
| CCATCGCCCTCGGTGAATTC+CGG | 0.382892 | 6_4:-87340558 | Msa1002110:CDS |
| CTTCCAGTTGTCGATGTAGA+TGG | 0.386358 | 6_4:+87340531 | None:intergenic |
| TACTGTTCTATTGATTGCAC+TGG | 0.398561 | 6_4:-87340454 | Msa1002110:CDS |
| TGCTAATAACCTTGAGGACT+AGG | 0.423773 | 6_4:+87340770 | None:intergenic |
| GCCATGTCTAGTTGTGTACT+AGG | 0.434969 | 6_4:+87341591 | None:intergenic |
| CTTATTGTAGAAGGGTTACA+TGG | 0.446986 | 6_4:+87341483 | None:intergenic |
| TCACCTGCATCTTCTCCCTC+AGG | 0.449806 | 6_4:-87340806 | Msa1002110:CDS |
| ATACTACTAGACTCTATGTT+TGG | 0.449830 | 6_4:-87340415 | Msa1002110:exon |
| ATCCATGCCACTACTTGTTA+GGG | 0.450316 | 6_4:+87341371 | None:intergenic |
| TGGGGTGTTGATTTGTGCAT+TGG | 0.461296 | 6_4:+87341503 | None:intergenic |
| TGAGACATTGTAAGATGTAA+TGG | 0.469321 | 6_4:+87340479 | None:intergenic |
| GCTAATAACCTTGAGGACTA+GGG | 0.472496 | 6_4:+87340771 | None:intergenic |
| TTCACCAACTTCATCTCCTC+TGG | 0.485231 | 6_4:-87340619 | Msa1002110:CDS |
| CCTCGTGCTTGTAACATGCC+TGG | 0.487865 | 6_4:-87341276 | Msa1002110:CDS |
| ATTCCATCTACATCGACAAC+TGG | 0.490256 | 6_4:-87340534 | Msa1002110:CDS |
| ATGTCACCTAGCAATAATAT+TGG | 0.492160 | 6_4:-87341553 | Msa1002110:CDS |
| GCTTCACCACTTCCTGCTCC+TGG | 0.495227 | 6_4:-87341109 | Msa1002110:intron |
| TTTGACTCCACCATCGCCCT+CGG | 0.501156 | 6_4:-87340568 | Msa1002110:CDS |
| GAGATGAAGTTGGTGAAGCT+GGG | 0.504474 | 6_4:+87340625 | None:intergenic |
| GCATTACCAGGAGCAGGAAG+TGG | 0.522233 | 6_4:+87341103 | None:intergenic |
| AGAGAGTGCTTATTGTAGAA+GGG | 0.525567 | 6_4:+87341475 | None:intergenic |
| TAATGACCAATATTATTGCT+AGG | 0.532925 | 6_4:+87341547 | None:intergenic |
| AATCCTGAGGGAGAAGATGC+AGG | 0.533311 | 6_4:+87340803 | None:intergenic |
| AGCAGGAAGTGGTGAAGCTG+AGG | 0.535400 | 6_4:+87341114 | None:intergenic |
| ATTCCAACCCCTAGTCCTCA+AGG | 0.540237 | 6_4:-87340779 | Msa1002110:intron |
| ACTCTCTTCACACCTTGTAT+GGG | 0.540459 | 6_4:-87341459 | Msa1002110:CDS |
| AATTTGGCATTACCAGGAGC+AGG | 0.546347 | 6_4:+87341097 | None:intergenic |
| TTCACAGGTCCTGTGGCTCT+AGG | 0.546401 | 6_4:-87340839 | Msa1002110:intron |
| TAACCTTGAGGACTAGGGGT+TGG | 0.546635 | 6_4:+87340776 | None:intergenic |
| ATGTATATTCACAGGTCCTG+TGG | 0.548141 | 6_4:-87340846 | Msa1002110:intron |
| ATCCCTAACAAGTAGTGGCA+TGG | 0.551127 | 6_4:-87341373 | Msa1002110:CDS |
| CTTAAATCCCTAACAAGTAG+TGG | 0.551269 | 6_4:-87341378 | Msa1002110:CDS |
| ATTGGTCATTAATATTGTCA+TGG | 0.553363 | 6_4:-87341535 | Msa1002110:CDS |
| TGTCGATGTAGATGGAATAC+CGG | 0.553646 | 6_4:+87340539 | None:intergenic |
| TGAGATGGTCCTAGAGCCAC+AGG | 0.556902 | 6_4:+87340830 | None:intergenic |
| GAATTCACCGAGGGCGATGG+TGG | 0.560540 | 6_4:+87340561 | None:intergenic |
| CCGGAATTCACCGAGGGCGA+TGG | 0.561975 | 6_4:+87340558 | None:intergenic |
| GGCGATGGTGGAGTCAAAAG+AGG | 0.563454 | 6_4:+87340573 | None:intergenic |
| ACTGTTCTATTGATTGCACT+GGG | 0.566423 | 6_4:-87340453 | Msa1002110:CDS |
| CCTGTAAGAAAACCCATACA+AGG | 0.567820 | 6_4:+87341447 | None:intergenic |
| GGAACATTTGTGTCTTGTTG+TGG | 0.568188 | 6_4:+87340594 | None:intergenic |
| TAAGATGTAATGGCAGATGA+TGG | 0.568483 | 6_4:+87340489 | None:intergenic |
| TTGCATTGAACTGGAACACC+AGG | 0.568933 | 6_4:+87341258 | None:intergenic |
| AAGAGCACCGCAACATTCAG+TGG | 0.581316 | 6_4:+87341398 | None:intergenic |
| AGGGAACACTAGCAGTTACA+AGG | 0.586483 | 6_4:+87341337 | None:intergenic |
| AGTGCAATCAATAGAACAGT+AGG | 0.586789 | 6_4:+87340456 | None:intergenic |
| GTGTCTTGTTGTGGTGCCAG+AGG | 0.590812 | 6_4:+87340603 | None:intergenic |
| GCACCGCAACATTCAGTGGT+TGG | 0.593515 | 6_4:+87341402 | None:intergenic |
| TCTACATCGACAACTGGAAG+CGG | 0.603015 | 6_4:-87340528 | Msa1002110:CDS |
| GAAGATGCAGGTGAATGAGA+TGG | 0.607870 | 6_4:+87340815 | None:intergenic |
| TCCTAGTACACAACTAGACA+TGG | 0.620091 | 6_4:-87341592 | Msa1002110:exon |
| GGTGTTCCAGTTCAATGCAA+AGG | 0.630148 | 6_4:-87341255 | Msa1002110:intron |
| CCAGGCATGTTACAAGCACG+AGG | 0.631598 | 6_4:+87341276 | None:intergenic |
| ACGAGGGAGAGAGATAGCTA+AGG | 0.635982 | 6_4:+87341293 | None:intergenic |
| CTAATAACCTTGAGGACTAG+GGG | 0.642081 | 6_4:+87340772 | None:intergenic |
| TCACCAACCACTGAATGTTG+CGG | 0.642405 | 6_4:-87341405 | Msa1002110:CDS |
| TTATTGTAGAAGGGTTACAT+GGG | 0.644859 | 6_4:+87341484 | None:intergenic |
| GCAACATTCAGTGGTTGGTG+AGG | 0.651267 | 6_4:+87341407 | None:intergenic |
| GGGGTTGGAATAAATCCTGA+GGG | 0.662198 | 6_4:+87340791 | None:intergenic |
| AGGGGTTGGAATAAATCCTG+AGG | 0.672890 | 6_4:+87340790 | None:intergenic |
| GGTGCCAGAGGAGATGAAGT+TGG | 0.674504 | 6_4:+87340615 | None:intergenic |
| GGAATACCGGAATTCACCGA+GGG | 0.686162 | 6_4:+87340552 | None:intergenic |
| TATTGTAGAAGGGTTACATG+GGG | 0.692481 | 6_4:+87341485 | None:intergenic |
| TGGTGAAGCTGGGATGTCAG+AGG | 0.694095 | 6_4:+87340635 | None:intergenic |
| TGGAATACCGGAATTCACCG+AGG | 0.697163 | 6_4:+87340551 | None:intergenic |
| CAGGCATGTTACAAGCACGA+GGG | 0.748196 | 6_4:+87341277 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr6_4:87340891-87340910 | None:intergenic | 10.0% |
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr6_4:87340891-87340910 | None:intergenic | 10.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr6_4:87340949-87340968 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr6_4:87340950-87340969 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr6_4:87341097-87341116 | None:intergenic | 15.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr6_4:87340949-87340968 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr6_4:87340950-87340969 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr6_4:87341097-87341116 | None:intergenic | 15.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr6_4:87341601-87341620 | None:intergenic | 20.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr6_4:87341601-87341620 | None:intergenic | 20.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr6_4:87340328-87340347 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr6_4:87340334-87340353 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr6_4:87340340-87340359 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr6_4:87340425-87340444 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr6_4:87340434-87340453 | Msa1002110:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr6_4:87340654-87340673 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr6_4:87340655-87340674 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | + | chr6_4:87340937-87340956 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr6_4:87340938-87340957 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr6_4:87341081-87341100 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr6_4:87341115-87341134 | Msa1002110:CDS | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr6_4:87341307-87341326 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr6_4:87341612-87341631 | Msa1002110:five_prime_UTR | 25.0% |
| !!! | TATGTAATTTTTTTGTGGTG+TGG | - | chr6_4:87341617-87341636 | Msa1002110:five_prime_UTR | 25.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr6_4:87340328-87340347 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr6_4:87340334-87340353 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr6_4:87340340-87340359 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr6_4:87340425-87340444 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr6_4:87340434-87340453 | Msa1002110:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr6_4:87340654-87340673 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr6_4:87340655-87340674 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | + | chr6_4:87340937-87340956 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr6_4:87340938-87340957 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr6_4:87341081-87341100 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr6_4:87341115-87341134 | Msa1002110:CDS | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr6_4:87341307-87341326 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr6_4:87341612-87341631 | Msa1002110:five_prime_UTR | 25.0% |
| !!! | TATGTAATTTTTTTGTGGTG+TGG | - | chr6_4:87341617-87341636 | Msa1002110:five_prime_UTR | 25.0% |
| ATGTCACCTAGCAATAATAT+TGG | - | chr6_4:87340416-87340435 | Msa1002110:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr6_4:87340488-87340507 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr6_4:87340666-87340685 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr6_4:87340723-87340742 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr6_4:87340881-87340900 | None:intergenic | 30.0% | |
| CTATCATCTAGTAACATTGT+AGG | - | chr6_4:87341048-87341067 | Msa1002110:intron | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr6_4:87341493-87341512 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr6_4:87341554-87341573 | Msa1002110:CDS | 30.0% | |
| ATGTCACCTAGCAATAATAT+TGG | - | chr6_4:87340416-87340435 | Msa1002110:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr6_4:87340488-87340507 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr6_4:87340666-87340685 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr6_4:87340723-87340742 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr6_4:87340881-87340900 | None:intergenic | 30.0% | |
| CTATCATCTAGTAACATTGT+AGG | - | chr6_4:87341048-87341067 | Msa1002110:intron | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr6_4:87341493-87341512 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr6_4:87341554-87341573 | Msa1002110:CDS | 30.0% | |
| GTCATTAATATTGTCATGGC+TGG | - | chr6_4:87340438-87340457 | Msa1002110:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr6_4:87340487-87340506 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr6_4:87340489-87340508 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr6_4:87340497-87340516 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr6_4:87340498-87340517 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr6_4:87340591-87340610 | Msa1002110:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | + | chr6_4:87341208-87341227 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr6_4:87341483-87341502 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr6_4:87341516-87341535 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr6_4:87341515-87341534 | Msa1002110:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr6_4:87341516-87341535 | Msa1002110:CDS | 35.0% |
| GTCATTAATATTGTCATGGC+TGG | - | chr6_4:87340438-87340457 | Msa1002110:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr6_4:87340487-87340506 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr6_4:87340489-87340508 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr6_4:87340497-87340516 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr6_4:87340498-87340517 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr6_4:87340591-87340610 | Msa1002110:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | + | chr6_4:87341208-87341227 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr6_4:87341483-87341502 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr6_4:87341516-87341535 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr6_4:87341515-87341534 | Msa1002110:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr6_4:87341516-87341535 | Msa1002110:CDS | 35.0% |
| TCCTAGTACACAACTAGACA+TGG | - | chr6_4:87340377-87340396 | Msa1002110:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr6_4:87340510-87340529 | Msa1002110:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr6_4:87340525-87340544 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr6_4:87340522-87340541 | Msa1002110:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr6_4:87340537-87340556 | Msa1002110:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | + | chr6_4:87340601-87340620 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | + | chr6_4:87340602-87340621 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr6_4:87341123-87341142 | Msa1002110:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | + | chr6_4:87341200-87341219 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | + | chr6_4:87341201-87341220 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | + | chr6_4:87341202-87341221 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr6_4:87341378-87341397 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr6_4:87341433-87341452 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr6_4:87341435-87341454 | Msa1002110:CDS | 40.0% | |
| TCCTAGTACACAACTAGACA+TGG | - | chr6_4:87340377-87340396 | Msa1002110:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr6_4:87340510-87340529 | Msa1002110:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr6_4:87340525-87340544 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr6_4:87340522-87340541 | Msa1002110:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr6_4:87340537-87340556 | Msa1002110:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | + | chr6_4:87340601-87340620 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | + | chr6_4:87340602-87340621 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr6_4:87341123-87341142 | Msa1002110:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | + | chr6_4:87341200-87341219 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | + | chr6_4:87341201-87341220 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | + | chr6_4:87341202-87341221 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr6_4:87341378-87341397 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr6_4:87341433-87341452 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr6_4:87341435-87341454 | Msa1002110:CDS | 40.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr6_4:87340381-87340400 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr6_4:87340469-87340488 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr6_4:87340509-87340528 | Msa1002110:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr6_4:87340564-87340583 | Msa1002110:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr6_4:87340596-87340615 | Msa1002110:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr6_4:87340635-87340654 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr6_4:87340714-87340733 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr6_4:87340714-87340733 | Msa1002110:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr6_4:87340875-87340894 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr6_4:87341157-87341176 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr6_4:87341181-87341200 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr6_4:87341182-87341201 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr6_4:87341347-87341366 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr6_4:87341350-87341369 | Msa1002110:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr6_4:87341441-87341460 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr6_4:87341441-87341460 | Msa1002110:CDS | 45.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr6_4:87340381-87340400 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr6_4:87340469-87340488 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr6_4:87340509-87340528 | Msa1002110:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr6_4:87340564-87340583 | Msa1002110:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr6_4:87340596-87340615 | Msa1002110:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr6_4:87340635-87340654 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr6_4:87340714-87340733 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr6_4:87340714-87340733 | Msa1002110:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr6_4:87340875-87340894 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr6_4:87341157-87341176 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr6_4:87341181-87341200 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr6_4:87341182-87341201 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr6_4:87341347-87341366 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr6_4:87341350-87341369 | Msa1002110:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr6_4:87341441-87341460 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr6_4:87341441-87341460 | Msa1002110:CDS | 45.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr6_4:87340565-87340584 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr6_4:87340574-87340593 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr6_4:87340679-87340698 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr6_4:87340695-87340714 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr6_4:87341169-87341188 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr6_4:87341190-87341209 | Msa1002110:intron | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | + | chr6_4:87341196-87341215 | None:intergenic | 50.0% | |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr6_4:87341348-87341367 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr6_4:87341420-87341439 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr6_4:87341421-87341440 | None:intergenic | 50.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr6_4:87340565-87340584 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr6_4:87340574-87340593 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr6_4:87340679-87340698 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr6_4:87340695-87340714 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr6_4:87341169-87341188 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr6_4:87341190-87341209 | Msa1002110:intron | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | + | chr6_4:87341196-87341215 | None:intergenic | 50.0% | |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr6_4:87341348-87341367 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr6_4:87341420-87341439 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr6_4:87341421-87341440 | None:intergenic | 50.0% | |
| GCACCGCAACATTCAGTGGT+TGG | + | chr6_4:87340570-87340589 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr6_4:87340696-87340715 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr6_4:87340693-87340712 | Msa1002110:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr6_4:87340858-87340877 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr6_4:87340869-87340888 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr6_4:87341130-87341149 | Msa1002110:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr6_4:87341142-87341161 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr6_4:87341163-87341182 | Msa1002110:intron | 55.0% | |
| TGGTGAAGCTGGGATGTCAG+AGG | + | chr6_4:87341337-87341356 | None:intergenic | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr6_4:87341357-87341376 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr6_4:87341369-87341388 | None:intergenic | 55.0% |
| !! | GGCGATGGTGGAGTCAAAAG+AGG | + | chr6_4:87341399-87341418 | None:intergenic | 55.0% |
| TTTGACTCCACCATCGCCCT+CGG | - | chr6_4:87341401-87341420 | Msa1002110:CDS | 55.0% | |
| GCACCGCAACATTCAGTGGT+TGG | + | chr6_4:87340570-87340589 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr6_4:87340696-87340715 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr6_4:87340693-87340712 | Msa1002110:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr6_4:87340858-87340877 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr6_4:87340869-87340888 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr6_4:87341130-87341149 | Msa1002110:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr6_4:87341142-87341161 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr6_4:87341163-87341182 | Msa1002110:intron | 55.0% | |
| TGGTGAAGCTGGGATGTCAG+AGG | + | chr6_4:87341337-87341356 | None:intergenic | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr6_4:87341357-87341376 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr6_4:87341369-87341388 | None:intergenic | 55.0% |
| !! | GGCGATGGTGGAGTCAAAAG+AGG | + | chr6_4:87341399-87341418 | None:intergenic | 55.0% |
| TTTGACTCCACCATCGCCCT+CGG | - | chr6_4:87341401-87341420 | Msa1002110:CDS | 55.0% | |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr6_4:87340860-87340879 | Msa1002110:intron | 60.0% | |
| GAATTCACCGAGGGCGATGG+TGG | + | chr6_4:87341411-87341430 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr6_4:87341411-87341430 | Msa1002110:CDS | 60.0% | |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr6_4:87340860-87340879 | Msa1002110:intron | 60.0% | |
| GAATTCACCGAGGGCGATGG+TGG | + | chr6_4:87341411-87341430 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr6_4:87341411-87341430 | Msa1002110:CDS | 60.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr6_4:87341414-87341433 | None:intergenic | 65.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr6_4:87341414-87341433 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 87340325 | 87341666 | 87340325 | ID=Msa1002110;Name=Msa1002110 |
| chr6_4 | mRNA | 87340325 | 87341666 | 87340325 | ID=Msa1002110-mRNA-1;Parent=Msa1002110;Name=Msa1002110-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|4|103|224 |
| chr6_4 | exon | 87340325 | 87340660 | 87340325 | ID=Msa1002110-mRNA-1:exon:17056;Parent=Msa1002110-mRNA-1 |
| chr6_4 | exon | 87340780 | 87340854 | 87340780 | ID=Msa1002110-mRNA-1:exon:17055;Parent=Msa1002110-mRNA-1 |
| chr6_4 | exon | 87341110 | 87341136 | 87341110 | ID=Msa1002110-mRNA-1:exon:17054;Parent=Msa1002110-mRNA-1 |
| chr6_4 | exon | 87341256 | 87341666 | 87341256 | ID=Msa1002110-mRNA-1:exon:17053;Parent=Msa1002110-mRNA-1 |
| chr6_4 | five_prime_UTR | 87341596 | 87341666 | 87341596 | ID=Msa1002110-mRNA-1:five_prime_utr;Parent=Msa1002110-mRNA-1 |
| chr6_4 | CDS | 87341256 | 87341595 | 87341256 | ID=Msa1002110-mRNA-1:cds;Parent=Msa1002110-mRNA-1 |
| chr6_4 | CDS | 87341110 | 87341136 | 87341110 | ID=Msa1002110-mRNA-1:cds;Parent=Msa1002110-mRNA-1 |
| chr6_4 | CDS | 87340780 | 87340854 | 87340780 | ID=Msa1002110-mRNA-1:cds;Parent=Msa1002110-mRNA-1 |
| chr6_4 | CDS | 87340428 | 87340660 | 87340428 | ID=Msa1002110-mRNA-1:cds;Parent=Msa1002110-mRNA-1 |
| chr6_4 | three_prime_UTR | 87340325 | 87340427 | 87340325 | ID=Msa1002110-mRNA-1:three_prime_utr;Parent=Msa1002110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
