Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087080 | XP_013469813.1 | 95.089 | 224 | 4 | 1 | 1 | 224 | 1 | 217 | 2.78e-139 | 399 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087080 | sp|Q1G2Y5|LTG21_ARATH | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.75e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087080 | A0A072VQE2 | 95.089 | 224 | 4 | 1 | 1 | 224 | 1 | 217 | 1.33e-139 | 399 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087080 | Msa0088080 | 0.955635 | 1.924477e-113 | -8.615850e-47 |
| Msa0087080 | Msa0179310 | 0.946401 | 4.953771e-105 | -8.615850e-47 |
| Msa0087080 | Msa0351890 | 0.813904 | 2.020682e-51 | -8.615850e-47 |
| Msa0087080 | Msa0398920 | 0.818413 | 1.986141e-52 | -8.615850e-47 |
| Msa0087080 | Msa0446170 | 0.852241 | 5.254025e-61 | -8.615850e-47 |
| Msa0087080 | Msa0457650 | 0.812014 | 5.246152e-51 | -8.615850e-47 |
| Msa0087080 | Msa1002110 | 0.942540 | 6.000981e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087080 | MtrunA17_Chr1g0205171 | 95.089 | 224 | 4 | 1 | 1 | 224 | 1 | 217 | 2.56e-143 | 399 |
| Msa0087080 | MtrunA17_Chr5g0394991 | 56.696 | 224 | 85 | 5 | 1 | 224 | 1 | 212 | 1.10e-67 | 207 |
| Msa0087080 | MtrunA17_Chr1g0185311 | 55.660 | 106 | 43 | 4 | 26 | 128 | 26 | 130 | 2.56e-31 | 113 |
| Msa0087080 | MtrunA17_Chr7g0260071 | 46.154 | 143 | 58 | 6 | 12 | 152 | 17 | 142 | 2.64e-22 | 90.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0087080 | AT1G05450.2 | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.78e-46 | 153 |
| Msa0087080 | AT3G22620.1 | 44.690 | 226 | 100 | 8 | 1 | 224 | 1 | 203 | 8.37e-43 | 144 |
| Msa0087080 | AT2G48140.1 | 48.428 | 159 | 70 | 6 | 12 | 159 | 7 | 164 | 2.93e-36 | 127 |
| Msa0087080 | AT2G48140.2 | 53.913 | 115 | 51 | 2 | 12 | 125 | 7 | 120 | 2.38e-35 | 122 |
Find 77 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGAGAAGTTGTAAAAT+TGG | 0.197802 | 1_2:-67901102 | None:intergenic |
| CACTCTCTTCACACCTTGTA+TGG | 0.248146 | 1_2:+67901274 | Msa0087080:CDS |
| AGAAGTTGTAAAATTGGTTT+TGG | 0.261052 | 1_2:-67901096 | None:intergenic |
| AATCCATGCCACTACTTGTT+AGG | 0.277189 | 1_2:-67901364 | None:intergenic |
| AAGAGAGTGCTTATTGTAGA+AGG | 0.288971 | 1_2:-67901260 | None:intergenic |
| GGAGATGAAGTTGGTGAAGC+TGG | 0.347569 | 1_2:-67902111 | None:intergenic |
| ATAGCTAAGGTTCTATTGAT+TGG | 0.350447 | 1_2:-67901428 | None:intergenic |
| CATAGCAACAATTTATATAT+AGG | 0.352461 | 1_2:-67902364 | None:intergenic |
| CTTACAGGTAGTAGTGCTAA+TGG | 0.358055 | 1_2:+67901302 | Msa0087080:CDS |
| GTCATTAATATTGTCATGGC+TGG | 0.381229 | 1_2:+67901203 | Msa0087080:CDS |
| CCATCGCCCTCGGTGAATTC+CGG | 0.383644 | 1_2:+67902177 | Msa0087080:CDS |
| CTTCCAGTTGTCGATGTAGA+TGG | 0.386358 | 1_2:-67902204 | None:intergenic |
| TACTGTTCTATTGATTGCAC+TGG | 0.398561 | 1_2:+67902281 | Msa0087080:CDS |
| GAGATGAAGTTGGTGAAGCT+GGG | 0.416122 | 1_2:-67902110 | None:intergenic |
| TGCTAATAACCTTGAGGACT+AGG | 0.423773 | 1_2:-67901965 | None:intergenic |
| GCCATGTCTAGTTGTGTACT+AGG | 0.434969 | 1_2:-67901143 | None:intergenic |
| CTTATTGTAGAAGGGTTACA+TGG | 0.446986 | 1_2:-67901251 | None:intergenic |
| TCACCTGCATCTTCTCCCTC+AGG | 0.449806 | 1_2:+67901929 | Msa0087080:CDS |
| ATACTACTAGACTCTATGTT+TGG | 0.449830 | 1_2:+67902320 | Msa0087080:exon |
| ATCCATGCCACTACTTGTTA+GGG | 0.450316 | 1_2:-67901363 | None:intergenic |
| TGGGGTGTTGATTTGTGCAT+TGG | 0.461296 | 1_2:-67901231 | None:intergenic |
| TGAGACATTGTAAGATGTAA+TGG | 0.469321 | 1_2:-67902256 | None:intergenic |
| GCTAATAACCTTGAGGACTA+GGG | 0.472496 | 1_2:-67901964 | None:intergenic |
| TTTGACTCCGCCATCGCCCT+CGG | 0.482556 | 1_2:+67902167 | Msa0087080:CDS |
| TTCACCAACTTCATCTCCTC+TGG | 0.485231 | 1_2:+67902116 | Msa0087080:CDS |
| CCTCGTGCTTGTAACATGCC+TGG | 0.487865 | 1_2:+67901458 | Msa0087080:CDS |
| ATTCCATCTACATCGACAAC+TGG | 0.490256 | 1_2:+67902201 | Msa0087080:CDS |
| ATGTCACCTAGCAATAATAT+TGG | 0.492160 | 1_2:+67901181 | Msa0087080:CDS |
| GCTTCACCACTTCCTGCTCC+TGG | 0.495227 | 1_2:+67901626 | Msa0087080:CDS |
| GCATTACCAGGAGCAGGAAG+TGG | 0.522233 | 1_2:-67901632 | None:intergenic |
| AGAGAGTGCTTATTGTAGAA+GGG | 0.525567 | 1_2:-67901259 | None:intergenic |
| TAATGACCAATATTATTGCT+AGG | 0.532925 | 1_2:-67901187 | None:intergenic |
| AATCCTGAGGGAGAAGATGC+AGG | 0.533311 | 1_2:-67901932 | None:intergenic |
| AGCAGGAAGTGGTGAAGCTG+AGG | 0.535400 | 1_2:-67901621 | None:intergenic |
| CCGGAATTCACCGAGGGCGA+TGG | 0.539092 | 1_2:-67902177 | None:intergenic |
| ATTCCAACCCCTAGTCCTCA+AGG | 0.540237 | 1_2:+67901956 | Msa0087080:CDS |
| ACTCTCTTCACACCTTGTAT+GGG | 0.540459 | 1_2:+67901275 | Msa0087080:CDS |
| AATTTGGCATTACCAGGAGC+AGG | 0.546347 | 1_2:-67901638 | None:intergenic |
| TTCACAGGTCCTGTGGCTCT+AGG | 0.546401 | 1_2:+67901896 | Msa0087080:intron |
| TAACCTTGAGGACTAGGGGT+TGG | 0.546635 | 1_2:-67901959 | None:intergenic |
| ATGTATATTCACAGGTCCTG+TGG | 0.548141 | 1_2:+67901889 | Msa0087080:intron |
| ATCCCTAACAAGTAGTGGCA+TGG | 0.551127 | 1_2:+67901361 | Msa0087080:CDS |
| CTTAAATCCCTAACAAGTAG+TGG | 0.551269 | 1_2:+67901356 | Msa0087080:CDS |
| ATTGGTCATTAATATTGTCA+TGG | 0.553363 | 1_2:+67901199 | Msa0087080:CDS |
| TGTCGATGTAGATGGAATAC+CGG | 0.553646 | 1_2:-67902196 | None:intergenic |
| TGAGATGGTCCTAGAGCCAC+AGG | 0.556902 | 1_2:-67901905 | None:intergenic |
| ACTGTTCTATTGATTGCACT+GGG | 0.566423 | 1_2:+67902282 | Msa0087080:CDS |
| CCTGTAAGAAAACCCATACA+AGG | 0.567820 | 1_2:-67901287 | None:intergenic |
| GGAACATTTGTGTCTTGTTG+TGG | 0.568188 | 1_2:-67902141 | None:intergenic |
| TAAGATGTAATGGCAGATGA+TGG | 0.568483 | 1_2:-67902246 | None:intergenic |
| TTGCATTGAACTGGAACACC+AGG | 0.568933 | 1_2:-67901476 | None:intergenic |
| GGCGATGGCGGAGTCAAAAG+AGG | 0.572662 | 1_2:-67902162 | None:intergenic |
| AAGAGCACCGCAACATTCAG+TGG | 0.581316 | 1_2:-67901336 | None:intergenic |
| AGGGAACACTAGCAGTTACA+AGG | 0.586483 | 1_2:-67901397 | None:intergenic |
| AGTGCAATCAATAGAACAGT+AGG | 0.586789 | 1_2:-67902279 | None:intergenic |
| GTGTCTTGTTGTGGTGCCAG+AGG | 0.590812 | 1_2:-67902132 | None:intergenic |
| GCACCGCAACATTCAGTGGT+TGG | 0.593515 | 1_2:-67901332 | None:intergenic |
| TCTACATCGACAACTGGAAG+CGG | 0.603015 | 1_2:+67902207 | Msa0087080:CDS |
| GAAGATGCAGGTGAATGAGA+TGG | 0.607870 | 1_2:-67901920 | None:intergenic |
| GAATTCACCGAGGGCGATGG+CGG | 0.615597 | 1_2:-67902174 | None:intergenic |
| TCCTAGTACACAACTAGACA+TGG | 0.620091 | 1_2:+67901142 | Msa0087080:exon |
| GGTGTTCCAGTTCAATGCAA+AGG | 0.630148 | 1_2:+67901479 | Msa0087080:CDS |
| CCAGGCATGTTACAAGCACG+AGG | 0.631598 | 1_2:-67901458 | None:intergenic |
| TGGTGAAGCTGGGAGGTCAG+AGG | 0.633468 | 1_2:-67902100 | None:intergenic |
| ACGAGGGAGAGAGATAGCTA+AGG | 0.635982 | 1_2:-67901441 | None:intergenic |
| CTAATAACCTTGAGGACTAG+GGG | 0.642081 | 1_2:-67901963 | None:intergenic |
| TCACCAACCACTGAATGTTG+CGG | 0.642405 | 1_2:+67901329 | Msa0087080:CDS |
| TTATTGTAGAAGGGTTACAT+GGG | 0.644859 | 1_2:-67901250 | None:intergenic |
| GCAACATTCAGTGGTTGGTG+AGG | 0.651267 | 1_2:-67901327 | None:intergenic |
| GGGGTTGGAATAAATCCTGA+GGG | 0.662198 | 1_2:-67901944 | None:intergenic |
| AGGGGTTGGAATAAATCCTG+AGG | 0.672890 | 1_2:-67901945 | None:intergenic |
| GGTGCCAGAGGAGATGAAGT+TGG | 0.674504 | 1_2:-67902120 | None:intergenic |
| GGAATACCGGAATTCACCGA+GGG | 0.686162 | 1_2:-67902183 | None:intergenic |
| TATTGTAGAAGGGTTACATG+GGG | 0.692481 | 1_2:-67901249 | None:intergenic |
| ATGAAGTTGGTGAAGCTGGG+AGG | 0.696977 | 1_2:-67902107 | None:intergenic |
| TGGAATACCGGAATTCACCG+AGG | 0.697163 | 1_2:-67902184 | None:intergenic |
| CAGGCATGTTACAAGCACGA+GGG | 0.748196 | 1_2:-67901457 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTGAAATTGAAATT+TGG | - | chr1_2:67901657-67901676 | None:intergenic | 10.0% |
| !! | AAATTATTGAAATTGAAATT+TGG | - | chr1_2:67901657-67901676 | None:intergenic | 10.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | - | chr1_2:67901715-67901734 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | - | chr1_2:67901716-67901735 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | - | chr1_2:67901863-67901882 | None:intergenic | 15.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | - | chr1_2:67901715-67901734 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | - | chr1_2:67901716-67901735 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | - | chr1_2:67901863-67901882 | None:intergenic | 15.0% |
| !! | CATAGCAACAATTTATATAT+AGG | - | chr1_2:67902367-67902386 | None:intergenic | 20.0% |
| !!! | TATGTAATTTTTTTGTGGTT+TGG | + | chr1_2:67902383-67902402 | Msa0087080:three_prime_UTR | 20.0% |
| !! | CATAGCAACAATTTATATAT+AGG | - | chr1_2:67902367-67902386 | None:intergenic | 20.0% |
| !!! | TATGTAATTTTTTTGTGGTT+TGG | + | chr1_2:67902383-67902402 | Msa0087080:three_prime_UTR | 20.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | - | chr1_2:67901093-67901112 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | - | chr1_2:67901099-67901118 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | - | chr1_2:67901105-67901124 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | - | chr1_2:67901190-67901209 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | + | chr1_2:67901199-67901218 | Msa0087080:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | - | chr1_2:67901419-67901438 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | - | chr1_2:67901420-67901439 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | - | chr1_2:67901703-67901722 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | - | chr1_2:67901704-67901723 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | - | chr1_2:67901847-67901866 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | + | chr1_2:67901881-67901900 | Msa0087080:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | - | chr1_2:67902073-67902092 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | + | chr1_2:67902378-67902397 | Msa0087080:three_prime_UTR | 25.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | - | chr1_2:67901093-67901112 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | - | chr1_2:67901099-67901118 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | - | chr1_2:67901105-67901124 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | - | chr1_2:67901190-67901209 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | + | chr1_2:67901199-67901218 | Msa0087080:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | - | chr1_2:67901419-67901438 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | - | chr1_2:67901420-67901439 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | - | chr1_2:67901703-67901722 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | - | chr1_2:67901704-67901723 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | - | chr1_2:67901847-67901866 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | + | chr1_2:67901881-67901900 | Msa0087080:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | - | chr1_2:67902073-67902092 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | + | chr1_2:67902378-67902397 | Msa0087080:three_prime_UTR | 25.0% |
| ATGTCACCTAGCAATAATAT+TGG | + | chr1_2:67901181-67901200 | Msa0087080:CDS | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | - | chr1_2:67901253-67901272 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | - | chr1_2:67901431-67901450 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | - | chr1_2:67901488-67901507 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | - | chr1_2:67901647-67901666 | None:intergenic | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | - | chr1_2:67902259-67902278 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | + | chr1_2:67902320-67902339 | Msa0087080:exon | 30.0% | |
| ATGTCACCTAGCAATAATAT+TGG | + | chr1_2:67901181-67901200 | Msa0087080:CDS | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | - | chr1_2:67901253-67901272 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | - | chr1_2:67901431-67901450 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | - | chr1_2:67901488-67901507 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | - | chr1_2:67901647-67901666 | None:intergenic | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | - | chr1_2:67902259-67902278 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | + | chr1_2:67902320-67902339 | Msa0087080:exon | 30.0% | |
| GTCATTAATATTGTCATGGC+TGG | + | chr1_2:67901203-67901222 | Msa0087080:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | - | chr1_2:67901252-67901271 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | - | chr1_2:67901254-67901273 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | - | chr1_2:67901262-67901281 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | - | chr1_2:67901263-67901282 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | + | chr1_2:67901356-67901375 | Msa0087080:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | - | chr1_2:67901974-67901993 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | - | chr1_2:67902249-67902268 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | - | chr1_2:67902282-67902301 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | + | chr1_2:67902281-67902300 | Msa0087080:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | + | chr1_2:67902282-67902301 | Msa0087080:CDS | 35.0% |
| GTCATTAATATTGTCATGGC+TGG | + | chr1_2:67901203-67901222 | Msa0087080:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | - | chr1_2:67901252-67901271 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | - | chr1_2:67901254-67901273 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | - | chr1_2:67901262-67901281 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | - | chr1_2:67901263-67901282 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | + | chr1_2:67901356-67901375 | Msa0087080:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | - | chr1_2:67901974-67901993 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | - | chr1_2:67902249-67902268 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | - | chr1_2:67902282-67902301 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | + | chr1_2:67902281-67902300 | Msa0087080:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | + | chr1_2:67902282-67902301 | Msa0087080:CDS | 35.0% |
| TCCTAGTACACAACTAGACA+TGG | + | chr1_2:67901142-67901161 | Msa0087080:exon | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | + | chr1_2:67901275-67901294 | Msa0087080:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | - | chr1_2:67901290-67901309 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | + | chr1_2:67901287-67901306 | Msa0087080:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | + | chr1_2:67901302-67901321 | Msa0087080:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | - | chr1_2:67901366-67901385 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | - | chr1_2:67901367-67901386 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | + | chr1_2:67901889-67901908 | Msa0087080:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | - | chr1_2:67901966-67901985 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | - | chr1_2:67901967-67901986 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | - | chr1_2:67901968-67901987 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | - | chr1_2:67902144-67902163 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | - | chr1_2:67902199-67902218 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | + | chr1_2:67902201-67902220 | Msa0087080:CDS | 40.0% | |
| TCCTAGTACACAACTAGACA+TGG | + | chr1_2:67901142-67901161 | Msa0087080:exon | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | + | chr1_2:67901275-67901294 | Msa0087080:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | - | chr1_2:67901290-67901309 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | + | chr1_2:67901287-67901306 | Msa0087080:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | + | chr1_2:67901302-67901321 | Msa0087080:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | - | chr1_2:67901366-67901385 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | - | chr1_2:67901367-67901386 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | + | chr1_2:67901889-67901908 | Msa0087080:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | - | chr1_2:67901966-67901985 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | - | chr1_2:67901967-67901986 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | - | chr1_2:67901968-67901987 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | - | chr1_2:67902144-67902163 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | - | chr1_2:67902199-67902218 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | + | chr1_2:67902201-67902220 | Msa0087080:CDS | 40.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | - | chr1_2:67901146-67901165 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | - | chr1_2:67901234-67901253 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | + | chr1_2:67901274-67901293 | Msa0087080:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | + | chr1_2:67901329-67901348 | Msa0087080:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | + | chr1_2:67901361-67901380 | Msa0087080:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | - | chr1_2:67901400-67901419 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | - | chr1_2:67901479-67901498 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | + | chr1_2:67901479-67901498 | Msa0087080:CDS | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | - | chr1_2:67901641-67901660 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | - | chr1_2:67901923-67901942 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | - | chr1_2:67901947-67901966 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | - | chr1_2:67901948-67901967 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | - | chr1_2:67902113-67902132 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | + | chr1_2:67902116-67902135 | Msa0087080:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | - | chr1_2:67902207-67902226 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | + | chr1_2:67902207-67902226 | Msa0087080:CDS | 45.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | - | chr1_2:67901146-67901165 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | - | chr1_2:67901234-67901253 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | + | chr1_2:67901274-67901293 | Msa0087080:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | + | chr1_2:67901329-67901348 | Msa0087080:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | + | chr1_2:67901361-67901380 | Msa0087080:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | - | chr1_2:67901400-67901419 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | - | chr1_2:67901479-67901498 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | + | chr1_2:67901479-67901498 | Msa0087080:CDS | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | - | chr1_2:67901641-67901660 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | - | chr1_2:67901923-67901942 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | - | chr1_2:67901947-67901966 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | - | chr1_2:67901948-67901967 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | - | chr1_2:67902113-67902132 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | + | chr1_2:67902116-67902135 | Msa0087080:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | - | chr1_2:67902207-67902226 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | + | chr1_2:67902207-67902226 | Msa0087080:CDS | 45.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | - | chr1_2:67901330-67901349 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | - | chr1_2:67901339-67901358 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | - | chr1_2:67901444-67901463 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | - | chr1_2:67901460-67901479 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | - | chr1_2:67901935-67901954 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | + | chr1_2:67901956-67901975 | Msa0087080:CDS | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | - | chr1_2:67901962-67901981 | None:intergenic | 50.0% | |
| !! | ATGAAGTTGGTGAAGCTGGG+AGG | - | chr1_2:67902110-67902129 | None:intergenic | 50.0% |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | - | chr1_2:67902114-67902133 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | - | chr1_2:67902186-67902205 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | - | chr1_2:67902187-67902206 | None:intergenic | 50.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | - | chr1_2:67901330-67901349 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | - | chr1_2:67901339-67901358 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | - | chr1_2:67901444-67901463 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | - | chr1_2:67901460-67901479 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | - | chr1_2:67901935-67901954 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | + | chr1_2:67901956-67901975 | Msa0087080:CDS | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | - | chr1_2:67901962-67901981 | None:intergenic | 50.0% | |
| !! | ATGAAGTTGGTGAAGCTGGG+AGG | - | chr1_2:67902110-67902129 | None:intergenic | 50.0% |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | - | chr1_2:67902114-67902133 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | - | chr1_2:67902186-67902205 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | - | chr1_2:67902187-67902206 | None:intergenic | 50.0% | |
| GCACCGCAACATTCAGTGGT+TGG | - | chr1_2:67901335-67901354 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | - | chr1_2:67901461-67901480 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | + | chr1_2:67901458-67901477 | Msa0087080:CDS | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | - | chr1_2:67901624-67901643 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | - | chr1_2:67901635-67901654 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | + | chr1_2:67901896-67901915 | Msa0087080:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | - | chr1_2:67901908-67901927 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | + | chr1_2:67901929-67901948 | Msa0087080:CDS | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | - | chr1_2:67902123-67902142 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | - | chr1_2:67902135-67902154 | None:intergenic | 55.0% |
| GCACCGCAACATTCAGTGGT+TGG | - | chr1_2:67901335-67901354 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | - | chr1_2:67901461-67901480 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | + | chr1_2:67901458-67901477 | Msa0087080:CDS | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | - | chr1_2:67901624-67901643 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | - | chr1_2:67901635-67901654 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | + | chr1_2:67901896-67901915 | Msa0087080:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | - | chr1_2:67901908-67901927 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | + | chr1_2:67901929-67901948 | Msa0087080:CDS | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | - | chr1_2:67902123-67902142 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | - | chr1_2:67902135-67902154 | None:intergenic | 55.0% |
| GCTTCACCACTTCCTGCTCC+TGG | + | chr1_2:67901626-67901645 | Msa0087080:CDS | 60.0% | |
| TGGTGAAGCTGGGAGGTCAG+AGG | - | chr1_2:67902103-67902122 | None:intergenic | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | - | chr1_2:67902165-67902184 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | + | chr1_2:67902167-67902186 | Msa0087080:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | - | chr1_2:67902177-67902196 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | + | chr1_2:67902177-67902196 | Msa0087080:CDS | 60.0% | |
| GCTTCACCACTTCCTGCTCC+TGG | + | chr1_2:67901626-67901645 | Msa0087080:CDS | 60.0% | |
| TGGTGAAGCTGGGAGGTCAG+AGG | - | chr1_2:67902103-67902122 | None:intergenic | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | - | chr1_2:67902165-67902184 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | + | chr1_2:67902167-67902186 | Msa0087080:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | - | chr1_2:67902177-67902196 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | + | chr1_2:67902177-67902196 | Msa0087080:CDS | 60.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | - | chr1_2:67902180-67902199 | None:intergenic | 65.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | - | chr1_2:67902180-67902199 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 67901090 | 67902432 | 67901090 | ID=Msa0087080;Name=Msa0087080 |
| chr1_2 | mRNA | 67901090 | 67902432 | 67901090 | ID=Msa0087080-mRNA-1;Parent=Msa0087080;Name=Msa0087080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|4|103|224 |
| chr1_2 | exon | 67901090 | 67901500 | 67901090 | ID=Msa0087080-mRNA-1:exon:23109;Parent=Msa0087080-mRNA-1 |
| chr1_2 | exon | 67901621 | 67901647 | 67901621 | ID=Msa0087080-mRNA-1:exon:23110;Parent=Msa0087080-mRNA-1 |
| chr1_2 | exon | 67901903 | 67901977 | 67901903 | ID=Msa0087080-mRNA-1:exon:23111;Parent=Msa0087080-mRNA-1 |
| chr1_2 | exon | 67902097 | 67902432 | 67902097 | ID=Msa0087080-mRNA-1:exon:23112;Parent=Msa0087080-mRNA-1 |
| chr1_2 | five_prime_UTR | 67901090 | 67901160 | 67901090 | ID=Msa0087080-mRNA-1:five_prime_utr;Parent=Msa0087080-mRNA-1 |
| chr1_2 | CDS | 67901161 | 67901500 | 67901161 | ID=Msa0087080-mRNA-1:cds;Parent=Msa0087080-mRNA-1 |
| chr1_2 | CDS | 67901621 | 67901647 | 67901621 | ID=Msa0087080-mRNA-1:cds;Parent=Msa0087080-mRNA-1 |
| chr1_2 | CDS | 67901903 | 67901977 | 67901903 | ID=Msa0087080-mRNA-1:cds;Parent=Msa0087080-mRNA-1 |
| chr1_2 | CDS | 67902097 | 67902329 | 67902097 | ID=Msa0087080-mRNA-1:cds;Parent=Msa0087080-mRNA-1 |
| chr1_2 | three_prime_UTR | 67902330 | 67902432 | 67902330 | ID=Msa0087080-mRNA-1:three_prime_utr;Parent=Msa0087080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
