Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088080 | sp|Q1G2Y5|LTG21_ARATH | 60.284 | 141 | 49 | 3 | 26 | 166 | 27 | 160 | 2.43e-44 | 150 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088080 | A0A072VQE2 | 95.089 | 224 | 4 | 1 | 1 | 224 | 1 | 217 | 3.77e-139 | 397 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087080 | Msa0088080 | 0.955635 | 1.924477e-113 | -8.615850e-47 |
| Msa0088080 | Msa0179310 | 0.917390 | 5.631333e-86 | -8.615850e-47 |
| Msa0088080 | Msa0398920 | 0.813591 | 2.368767e-51 | -8.615850e-47 |
| Msa0088080 | Msa0446170 | 0.834819 | 2.403522e-56 | -8.615850e-47 |
| Msa0088080 | Msa0457650 | 0.820629 | 6.199025e-53 | -8.615850e-47 |
| Msa0088080 | Msa1002110 | 0.886308 | 3.828748e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088080 | MtrunA17_Chr1g0205171 | 95.089 | 224 | 4 | 1 | 1 | 224 | 1 | 217 | 7.26e-143 | 397 |
| Msa0088080 | MtrunA17_Chr5g0394991 | 56.250 | 224 | 86 | 5 | 1 | 224 | 1 | 212 | 2.22e-66 | 204 |
| Msa0088080 | MtrunA17_Chr1g0185311 | 54.717 | 106 | 44 | 4 | 26 | 128 | 26 | 130 | 4.32e-30 | 110 |
| Msa0088080 | MtrunA17_Chr7g0260071 | 45.455 | 143 | 59 | 6 | 12 | 152 | 17 | 142 | 4.85e-21 | 87.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0088080 | AT1G05450.2 | 60.284 | 141 | 49 | 3 | 26 | 166 | 27 | 160 | 2.47e-45 | 150 |
| Msa0088080 | AT3G22620.1 | 44.690 | 226 | 100 | 8 | 1 | 224 | 1 | 203 | 5.09e-43 | 144 |
| Msa0088080 | AT2G48140.1 | 48.428 | 159 | 70 | 6 | 12 | 159 | 7 | 164 | 2.14e-36 | 127 |
| Msa0088080 | AT2G48140.2 | 53.913 | 115 | 51 | 2 | 12 | 125 | 7 | 120 | 2.00e-35 | 122 |
Find 77 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGAGAAGTTGTAAAAT+TGG | 0.197802 | 1_2:+69138171 | None:intergenic |
| CACTCTCTTCACACCTTGTA+TGG | 0.248146 | 1_2:-69137999 | Msa0088080:CDS |
| AGAAGTTGTAAAATTGGTTT+TGG | 0.261052 | 1_2:+69138177 | None:intergenic |
| AAGAGAGTGCTTATTGTAGA+AGG | 0.288971 | 1_2:+69138013 | None:intergenic |
| AAGCCATGCCACTACTTGTT+AGG | 0.316236 | 1_2:+69137909 | None:intergenic |
| GGAGATGAAGTTGGTGAAGC+TGG | 0.347569 | 1_2:+69137160 | None:intergenic |
| ATAGCTAAGGTTCTATTGAT+TGG | 0.350447 | 1_2:+69137845 | None:intergenic |
| CATAGCAACAATTTATATAT+AGG | 0.352461 | 1_2:+69136907 | None:intergenic |
| CTTACAGGTAGTAGTGCTAA+TGG | 0.358055 | 1_2:-69137971 | Msa0088080:CDS |
| GTCATTAATATTGTCATGGC+TGG | 0.381229 | 1_2:-69138070 | Msa0088080:CDS |
| CCATCGCCCTCGGTGAATTC+CGG | 0.383644 | 1_2:-69137094 | Msa0088080:CDS |
| CTTCCAGTTGTCGATGTAGA+TGG | 0.386358 | 1_2:+69137067 | None:intergenic |
| TACTGTTCTATTGATTGCAC+TGG | 0.398561 | 1_2:-69136990 | Msa0088080:CDS |
| GAGATGAAGTTGGTGAAGCT+GGG | 0.416122 | 1_2:+69137161 | None:intergenic |
| TGCTAATAACCTTGAGGACT+AGG | 0.423773 | 1_2:+69137306 | None:intergenic |
| GCCATGTCTAGTTGTGTACT+AGG | 0.434969 | 1_2:+69138130 | None:intergenic |
| CTTATTGTAGAAGGGTTACA+TGG | 0.446986 | 1_2:+69138022 | None:intergenic |
| TCACCTGCATCTTCTCCCTC+AGG | 0.449806 | 1_2:-69137342 | Msa0088080:CDS |
| ATACTACTAGACTCTATGTT+TGG | 0.449830 | 1_2:-69136951 | Msa0088080:exon |
| TGGGGTGTTGATTTGTGCAT+TGG | 0.461296 | 1_2:+69138042 | None:intergenic |
| TGAGACATTGTAAGATGTAA+TGG | 0.469321 | 1_2:+69137015 | None:intergenic |
| GCTAATAACCTTGAGGACTA+GGG | 0.472496 | 1_2:+69137307 | None:intergenic |
| AGCCATGCCACTACTTGTTA+GGG | 0.480805 | 1_2:+69137910 | None:intergenic |
| TTTGACTCCGCCATCGCCCT+CGG | 0.482556 | 1_2:-69137104 | Msa0088080:CDS |
| TTCACCAACTTCATCTCCTC+TGG | 0.485231 | 1_2:-69137155 | Msa0088080:CDS |
| CCTCGTGCTTGTAACATGCC+TGG | 0.487865 | 1_2:-69137815 | Msa0088080:CDS |
| ATTCCATCTACATCGACAAC+TGG | 0.490256 | 1_2:-69137070 | Msa0088080:CDS |
| ATGTCACCTAGCAATAATAT+TGG | 0.492160 | 1_2:-69138092 | Msa0088080:CDS |
| GCTTCACCACTTCCTGCTCC+TGG | 0.495227 | 1_2:-69137645 | Msa0088080:intron |
| GCATTACCAGGAGCAGGAAG+TGG | 0.522233 | 1_2:+69137639 | None:intergenic |
| AGAGAGTGCTTATTGTAGAA+GGG | 0.525567 | 1_2:+69138014 | None:intergenic |
| TAATGACCAATATTATTGCT+AGG | 0.532925 | 1_2:+69138086 | None:intergenic |
| AATCCTGAGGGAGAAGATGC+AGG | 0.533311 | 1_2:+69137339 | None:intergenic |
| AGCAGGAAGTGGTGAAGCTG+AGG | 0.535400 | 1_2:+69137650 | None:intergenic |
| CCGGAATTCACCGAGGGCGA+TGG | 0.539092 | 1_2:+69137094 | None:intergenic |
| ATTCCAACCCCTAGTCCTCA+AGG | 0.540237 | 1_2:-69137315 | Msa0088080:intron |
| ACTCTCTTCACACCTTGTAT+GGG | 0.540459 | 1_2:-69137998 | Msa0088080:CDS |
| AATTTGGCATTACCAGGAGC+AGG | 0.546347 | 1_2:+69137633 | None:intergenic |
| TTCACAGGTCCTGTGGCTCT+AGG | 0.546401 | 1_2:-69137375 | Msa0088080:intron |
| TAACCTTGAGGACTAGGGGT+TGG | 0.546635 | 1_2:+69137312 | None:intergenic |
| ATGTATATTCACAGGTCCTG+TGG | 0.548141 | 1_2:-69137382 | Msa0088080:intron |
| CTTAAATCCCTAACAAGTAG+TGG | 0.551269 | 1_2:-69137917 | Msa0088080:CDS |
| ATTGGTCATTAATATTGTCA+TGG | 0.553363 | 1_2:-69138074 | Msa0088080:CDS |
| TGTCGATGTAGATGGAATAC+CGG | 0.553646 | 1_2:+69137075 | None:intergenic |
| TGAGATGGTCCTAGAGCCAC+AGG | 0.556902 | 1_2:+69137366 | None:intergenic |
| ACTGTTCTATTGATTGCACT+GGG | 0.566423 | 1_2:-69136989 | Msa0088080:CDS |
| CCTGTAAGAAAACCCATACA+AGG | 0.567820 | 1_2:+69137986 | None:intergenic |
| GGAACATTTGTGTCTTGTTG+TGG | 0.568188 | 1_2:+69137130 | None:intergenic |
| TAAGATGTAATGGCAGATGA+TGG | 0.568483 | 1_2:+69137025 | None:intergenic |
| TTGCATTGAACTGGAACACC+AGG | 0.568933 | 1_2:+69137797 | None:intergenic |
| GGCGATGGCGGAGTCAAAAG+AGG | 0.572662 | 1_2:+69137109 | None:intergenic |
| AAGAGCACCGCAACATTCAG+TGG | 0.581316 | 1_2:+69137937 | None:intergenic |
| ATCCCTAACAAGTAGTGGCA+TGG | 0.582857 | 1_2:-69137912 | Msa0088080:CDS |
| AGGGAACACTAGCAGTTACA+AGG | 0.586483 | 1_2:+69137876 | None:intergenic |
| AGTGCAATCAATAGAACAGT+AGG | 0.586789 | 1_2:+69136992 | None:intergenic |
| GTGTCTTGTTGTGGTGCCAG+AGG | 0.590812 | 1_2:+69137139 | None:intergenic |
| GCACCGCAACATTCAGTGGT+TGG | 0.593515 | 1_2:+69137941 | None:intergenic |
| TCTACATCGACAACTGGAAG+CGG | 0.603015 | 1_2:-69137064 | Msa0088080:CDS |
| GAAGATGCAGGTGAATGAGA+TGG | 0.607870 | 1_2:+69137351 | None:intergenic |
| GAATTCACCGAGGGCGATGG+CGG | 0.615597 | 1_2:+69137097 | None:intergenic |
| TCCTAGTACACAACTAGACA+TGG | 0.620091 | 1_2:-69138131 | Msa0088080:exon |
| GGTGTTCCAGTTCAATGCAA+AGG | 0.630148 | 1_2:-69137794 | Msa0088080:intron |
| CCAGGCATGTTACAAGCACG+AGG | 0.631598 | 1_2:+69137815 | None:intergenic |
| TGGTGAAGCTGGGAGGTCAG+AGG | 0.633468 | 1_2:+69137171 | None:intergenic |
| ACGAGGGAGAGAGATAGCTA+AGG | 0.635982 | 1_2:+69137832 | None:intergenic |
| CTAATAACCTTGAGGACTAG+GGG | 0.642081 | 1_2:+69137308 | None:intergenic |
| TCACCAACCACTGAATGTTG+CGG | 0.642405 | 1_2:-69137944 | Msa0088080:CDS |
| TTATTGTAGAAGGGTTACAT+GGG | 0.644859 | 1_2:+69138023 | None:intergenic |
| GCAACATTCAGTGGTTGGTG+AGG | 0.651267 | 1_2:+69137946 | None:intergenic |
| GGGGTTGGAATAAATCCTGA+GGG | 0.662198 | 1_2:+69137327 | None:intergenic |
| AGGGGTTGGAATAAATCCTG+AGG | 0.672890 | 1_2:+69137326 | None:intergenic |
| GGTGCCAGAGGAGATGAAGT+TGG | 0.674504 | 1_2:+69137151 | None:intergenic |
| GGAATACCGGAATTCACCGA+GGG | 0.686162 | 1_2:+69137088 | None:intergenic |
| TATTGTAGAAGGGTTACATG+GGG | 0.692481 | 1_2:+69138024 | None:intergenic |
| ATGAAGTTGGTGAAGCTGGG+AGG | 0.696977 | 1_2:+69137164 | None:intergenic |
| TGGAATACCGGAATTCACCG+AGG | 0.697163 | 1_2:+69137087 | None:intergenic |
| CAGGCATGTTACAAGCACGA+GGG | 0.748196 | 1_2:+69137816 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr1_2:69137430-69137449 | None:intergenic | 10.0% |
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr1_2:69137430-69137449 | None:intergenic | 10.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr1_2:69137488-69137507 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr1_2:69137489-69137508 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr1_2:69137636-69137655 | None:intergenic | 15.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr1_2:69137488-69137507 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr1_2:69137489-69137508 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr1_2:69137636-69137655 | None:intergenic | 15.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr1_2:69138140-69138159 | None:intergenic | 20.0% |
| !!! | TATGTAATTTTTTTGTGGTT+TGG | - | chr1_2:69138156-69138175 | Msa0088080:five_prime_UTR | 20.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr1_2:69138140-69138159 | None:intergenic | 20.0% |
| !!! | TATGTAATTTTTTTGTGGTT+TGG | - | chr1_2:69138156-69138175 | Msa0088080:five_prime_UTR | 20.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr1_2:69136864-69136883 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr1_2:69136870-69136889 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr1_2:69136876-69136895 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr1_2:69136961-69136980 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr1_2:69136970-69136989 | Msa0088080:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr1_2:69137190-69137209 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr1_2:69137191-69137210 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr1_2:69137477-69137496 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr1_2:69137620-69137639 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr1_2:69137654-69137673 | Msa0088080:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr1_2:69137846-69137865 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr1_2:69138151-69138170 | Msa0088080:five_prime_UTR | 25.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr1_2:69136864-69136883 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr1_2:69136870-69136889 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr1_2:69136876-69136895 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr1_2:69136961-69136980 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr1_2:69136970-69136989 | Msa0088080:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr1_2:69137190-69137209 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr1_2:69137191-69137210 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr1_2:69137477-69137496 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr1_2:69137620-69137639 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr1_2:69137654-69137673 | Msa0088080:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr1_2:69137846-69137865 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr1_2:69138151-69138170 | Msa0088080:five_prime_UTR | 25.0% |
| ATGTCACCTAGCAATAATAT+TGG | - | chr1_2:69136952-69136971 | Msa0088080:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr1_2:69137024-69137043 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr1_2:69137202-69137221 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr1_2:69137259-69137278 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr1_2:69137420-69137439 | None:intergenic | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr1_2:69138032-69138051 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr1_2:69138093-69138112 | Msa0088080:CDS | 30.0% | |
| ATGTCACCTAGCAATAATAT+TGG | - | chr1_2:69136952-69136971 | Msa0088080:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr1_2:69137024-69137043 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr1_2:69137202-69137221 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr1_2:69137259-69137278 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr1_2:69137420-69137439 | None:intergenic | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr1_2:69138032-69138051 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr1_2:69138093-69138112 | Msa0088080:CDS | 30.0% | |
| GTCATTAATATTGTCATGGC+TGG | - | chr1_2:69136974-69136993 | Msa0088080:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr1_2:69137023-69137042 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr1_2:69137025-69137044 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr1_2:69137033-69137052 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr1_2:69137034-69137053 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr1_2:69137127-69137146 | Msa0088080:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | + | chr1_2:69137747-69137766 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr1_2:69138022-69138041 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr1_2:69138055-69138074 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr1_2:69138054-69138073 | Msa0088080:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr1_2:69138055-69138074 | Msa0088080:CDS | 35.0% |
| GTCATTAATATTGTCATGGC+TGG | - | chr1_2:69136974-69136993 | Msa0088080:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr1_2:69137023-69137042 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr1_2:69137025-69137044 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr1_2:69137033-69137052 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr1_2:69137034-69137053 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr1_2:69137127-69137146 | Msa0088080:CDS | 35.0% | |
| GTGTAATGCTAATAACCTTG+AGG | + | chr1_2:69137747-69137766 | None:intergenic | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr1_2:69138022-69138041 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr1_2:69138055-69138074 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr1_2:69138054-69138073 | Msa0088080:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr1_2:69138055-69138074 | Msa0088080:CDS | 35.0% |
| TCCTAGTACACAACTAGACA+TGG | - | chr1_2:69136913-69136932 | Msa0088080:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr1_2:69137046-69137065 | Msa0088080:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr1_2:69137061-69137080 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr1_2:69137058-69137077 | Msa0088080:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr1_2:69137073-69137092 | Msa0088080:CDS | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr1_2:69137662-69137681 | Msa0088080:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | + | chr1_2:69137739-69137758 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | + | chr1_2:69137740-69137759 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | + | chr1_2:69137741-69137760 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr1_2:69137917-69137936 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr1_2:69137972-69137991 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr1_2:69137974-69137993 | Msa0088080:CDS | 40.0% | |
| TCCTAGTACACAACTAGACA+TGG | - | chr1_2:69136913-69136932 | Msa0088080:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr1_2:69137046-69137065 | Msa0088080:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr1_2:69137061-69137080 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr1_2:69137058-69137077 | Msa0088080:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr1_2:69137073-69137092 | Msa0088080:CDS | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr1_2:69137662-69137681 | Msa0088080:intron | 40.0% | |
| CTAATAACCTTGAGGACTAG+GGG | + | chr1_2:69137739-69137758 | None:intergenic | 40.0% | |
| GCTAATAACCTTGAGGACTA+GGG | + | chr1_2:69137740-69137759 | None:intergenic | 40.0% | |
| TGCTAATAACCTTGAGGACT+AGG | + | chr1_2:69137741-69137760 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr1_2:69137917-69137936 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr1_2:69137972-69137991 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr1_2:69137974-69137993 | Msa0088080:CDS | 40.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr1_2:69136917-69136936 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr1_2:69137005-69137024 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr1_2:69137045-69137064 | Msa0088080:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr1_2:69137100-69137119 | Msa0088080:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr1_2:69137132-69137151 | Msa0088080:CDS | 45.0% | |
| ! | AGCCATGCCACTACTTGTTA+GGG | + | chr1_2:69137137-69137156 | None:intergenic | 45.0% |
| AAGCCATGCCACTACTTGTT+AGG | + | chr1_2:69137138-69137157 | None:intergenic | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr1_2:69137171-69137190 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr1_2:69137250-69137269 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr1_2:69137250-69137269 | Msa0088080:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr1_2:69137414-69137433 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr1_2:69137696-69137715 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr1_2:69137720-69137739 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr1_2:69137721-69137740 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr1_2:69137886-69137905 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr1_2:69137889-69137908 | Msa0088080:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr1_2:69137980-69137999 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr1_2:69137980-69137999 | Msa0088080:CDS | 45.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr1_2:69136917-69136936 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr1_2:69137005-69137024 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr1_2:69137045-69137064 | Msa0088080:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr1_2:69137100-69137119 | Msa0088080:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr1_2:69137132-69137151 | Msa0088080:CDS | 45.0% | |
| ! | AGCCATGCCACTACTTGTTA+GGG | + | chr1_2:69137137-69137156 | None:intergenic | 45.0% |
| AAGCCATGCCACTACTTGTT+AGG | + | chr1_2:69137138-69137157 | None:intergenic | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr1_2:69137171-69137190 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr1_2:69137250-69137269 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr1_2:69137250-69137269 | Msa0088080:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr1_2:69137414-69137433 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr1_2:69137696-69137715 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr1_2:69137720-69137739 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr1_2:69137721-69137740 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr1_2:69137886-69137905 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr1_2:69137889-69137908 | Msa0088080:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr1_2:69137980-69137999 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr1_2:69137980-69137999 | Msa0088080:CDS | 45.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr1_2:69137101-69137120 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr1_2:69137110-69137129 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr1_2:69137215-69137234 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr1_2:69137231-69137250 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr1_2:69137708-69137727 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr1_2:69137729-69137748 | Msa0088080:intron | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | + | chr1_2:69137735-69137754 | None:intergenic | 50.0% | |
| !! | ATGAAGTTGGTGAAGCTGGG+AGG | + | chr1_2:69137883-69137902 | None:intergenic | 50.0% |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr1_2:69137887-69137906 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr1_2:69137959-69137978 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr1_2:69137960-69137979 | None:intergenic | 50.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr1_2:69137101-69137120 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr1_2:69137110-69137129 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr1_2:69137215-69137234 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr1_2:69137231-69137250 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr1_2:69137708-69137727 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr1_2:69137729-69137748 | Msa0088080:intron | 50.0% | |
| TAACCTTGAGGACTAGGGGT+TGG | + | chr1_2:69137735-69137754 | None:intergenic | 50.0% | |
| !! | ATGAAGTTGGTGAAGCTGGG+AGG | + | chr1_2:69137883-69137902 | None:intergenic | 50.0% |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr1_2:69137887-69137906 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr1_2:69137959-69137978 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr1_2:69137960-69137979 | None:intergenic | 50.0% | |
| GCACCGCAACATTCAGTGGT+TGG | + | chr1_2:69137106-69137125 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr1_2:69137232-69137251 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr1_2:69137229-69137248 | Msa0088080:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr1_2:69137397-69137416 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr1_2:69137408-69137427 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr1_2:69137669-69137688 | Msa0088080:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr1_2:69137681-69137700 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr1_2:69137702-69137721 | Msa0088080:intron | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr1_2:69137896-69137915 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr1_2:69137908-69137927 | None:intergenic | 55.0% |
| GCACCGCAACATTCAGTGGT+TGG | + | chr1_2:69137106-69137125 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr1_2:69137232-69137251 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr1_2:69137229-69137248 | Msa0088080:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr1_2:69137397-69137416 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr1_2:69137408-69137427 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr1_2:69137669-69137688 | Msa0088080:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr1_2:69137681-69137700 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr1_2:69137702-69137721 | Msa0088080:intron | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr1_2:69137896-69137915 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr1_2:69137908-69137927 | None:intergenic | 55.0% |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr1_2:69137399-69137418 | Msa0088080:intron | 60.0% | |
| TGGTGAAGCTGGGAGGTCAG+AGG | + | chr1_2:69137876-69137895 | None:intergenic | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | + | chr1_2:69137938-69137957 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | - | chr1_2:69137940-69137959 | Msa0088080:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | + | chr1_2:69137950-69137969 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr1_2:69137950-69137969 | Msa0088080:CDS | 60.0% | |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr1_2:69137399-69137418 | Msa0088080:intron | 60.0% | |
| TGGTGAAGCTGGGAGGTCAG+AGG | + | chr1_2:69137876-69137895 | None:intergenic | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | + | chr1_2:69137938-69137957 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | - | chr1_2:69137940-69137959 | Msa0088080:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | + | chr1_2:69137950-69137969 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr1_2:69137950-69137969 | Msa0088080:CDS | 60.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr1_2:69137953-69137972 | None:intergenic | 65.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr1_2:69137953-69137972 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 69136861 | 69138205 | 69136861 | ID=Msa0088080;Name=Msa0088080 |
| chr1_2 | mRNA | 69136861 | 69138205 | 69136861 | ID=Msa0088080-mRNA-1;Parent=Msa0088080;Name=Msa0088080-mRNA-1;_AED=0.01;_eAED=0.01;_QI=71|1|1|1|1|1|4|103|224 |
| chr1_2 | exon | 69136861 | 69137196 | 69136861 | ID=Msa0088080-mRNA-1:exon:23734;Parent=Msa0088080-mRNA-1 |
| chr1_2 | exon | 69137316 | 69137390 | 69137316 | ID=Msa0088080-mRNA-1:exon:23733;Parent=Msa0088080-mRNA-1 |
| chr1_2 | exon | 69137646 | 69137672 | 69137646 | ID=Msa0088080-mRNA-1:exon:23732;Parent=Msa0088080-mRNA-1 |
| chr1_2 | exon | 69137795 | 69138205 | 69137795 | ID=Msa0088080-mRNA-1:exon:23731;Parent=Msa0088080-mRNA-1 |
| chr1_2 | five_prime_UTR | 69138135 | 69138205 | 69138135 | ID=Msa0088080-mRNA-1:five_prime_utr;Parent=Msa0088080-mRNA-1 |
| chr1_2 | CDS | 69137795 | 69138134 | 69137795 | ID=Msa0088080-mRNA-1:cds;Parent=Msa0088080-mRNA-1 |
| chr1_2 | CDS | 69137646 | 69137672 | 69137646 | ID=Msa0088080-mRNA-1:cds;Parent=Msa0088080-mRNA-1 |
| chr1_2 | CDS | 69137316 | 69137390 | 69137316 | ID=Msa0088080-mRNA-1:cds;Parent=Msa0088080-mRNA-1 |
| chr1_2 | CDS | 69136964 | 69137196 | 69136964 | ID=Msa0088080-mRNA-1:cds;Parent=Msa0088080-mRNA-1 |
| chr1_2 | three_prime_UTR | 69136861 | 69136963 | 69136861 | ID=Msa0088080-mRNA-1:three_prime_utr;Parent=Msa0088080-mRNA-1 |
| Gene Sequence |
| Protein sequence |
