Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179310 | XP_013469813.1 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 5.80e-139 | 398 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179310 | sp|Q1G2Y5|LTG21_ARATH | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.70e-45 | 153 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179310 | A0A072VQE2 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 2.77e-139 | 398 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0087080 | Msa0179310 | 0.946401 | 4.953771e-105 | -8.615850e-47 |
| Msa0088080 | Msa0179310 | 0.917390 | 5.631333e-86 | -8.615850e-47 |
| Msa0179310 | Msa0351890 | 0.801003 | 1.105110e-48 | -8.615850e-47 |
| Msa0179310 | Msa0398920 | 0.805922 | 1.056180e-49 | -8.615850e-47 |
| Msa0179310 | Msa0446170 | 0.819704 | 1.010144e-52 | -8.615850e-47 |
| Msa0179310 | Msa1002110 | 0.956258 | 4.509520e-114 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179310 | MtrunA17_Chr1g0205171 | 94.643 | 224 | 5 | 1 | 1 | 224 | 1 | 217 | 5.34e-143 | 398 |
| Msa0179310 | MtrunA17_Chr5g0394991 | 56.250 | 224 | 86 | 5 | 1 | 224 | 1 | 212 | 2.80e-67 | 206 |
| Msa0179310 | MtrunA17_Chr1g0185311 | 55.660 | 106 | 43 | 4 | 26 | 128 | 26 | 130 | 2.40e-31 | 113 |
| Msa0179310 | MtrunA17_Chr7g0260071 | 46.875 | 128 | 56 | 4 | 12 | 132 | 17 | 139 | 2.99e-22 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0179310 | AT1G05450.2 | 60.993 | 141 | 48 | 3 | 26 | 166 | 27 | 160 | 1.72e-46 | 153 |
| Msa0179310 | AT3G22620.1 | 44.690 | 226 | 100 | 8 | 1 | 224 | 1 | 203 | 7.93e-43 | 144 |
| Msa0179310 | AT2G48140.1 | 48.428 | 159 | 70 | 6 | 12 | 159 | 7 | 164 | 2.60e-36 | 127 |
| Msa0179310 | AT2G48140.2 | 53.913 | 115 | 51 | 2 | 12 | 125 | 7 | 120 | 2.46e-35 | 122 |
Find 76 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAAGAGAAGTTGTAAAAT+TGG | 0.197802 | 1_4:+66797397 | None:intergenic |
| CACTCTCTTCACACCTTGTA+TGG | 0.248146 | 1_4:-66797225 | Msa0179310:CDS |
| AGAAGTTGTAAAATTGGTTT+TGG | 0.261052 | 1_4:+66797403 | None:intergenic |
| AATCCATGCCACTACTTGTT+AGG | 0.277189 | 1_4:+66797135 | None:intergenic |
| AAGAGAGTGCTTATTGTAGA+AGG | 0.288971 | 1_4:+66797239 | None:intergenic |
| ATAGCTAAGGTTCTATTGAT+TGG | 0.350447 | 1_4:+66797071 | None:intergenic |
| CATAGCAACAATTTATATAT+AGG | 0.352461 | 1_4:+66796129 | None:intergenic |
| CTTACAGGTAGTAGTGCTAA+TGG | 0.358055 | 1_4:-66797197 | Msa0179310:CDS |
| GGAGATGAAGTTGGTGAAGC+TGG | 0.379930 | 1_4:+66796382 | None:intergenic |
| GTCATTAATATTGTCATGGC+TGG | 0.381229 | 1_4:-66797296 | Msa0179310:CDS |
| CCATCGCCCTCGGTGAATTC+CGG | 0.383644 | 1_4:-66796316 | Msa0179310:CDS |
| CTTCCAGTTGTCGATGTAGA+TGG | 0.386358 | 1_4:+66796289 | None:intergenic |
| TACTGTTCTATTGATTGCAC+TGG | 0.398561 | 1_4:-66796212 | Msa0179310:CDS |
| GCCATGTCTAGTTGTGTACT+AGG | 0.434969 | 1_4:+66797356 | None:intergenic |
| CTTATTGTAGAAGGGTTACA+TGG | 0.446986 | 1_4:+66797248 | None:intergenic |
| TCACCTGCATCTTCTCCCTC+AGG | 0.449806 | 1_4:-66796564 | Msa0179310:CDS |
| ATACTACTAGACTCTATGTT+TGG | 0.449830 | 1_4:-66796173 | Msa0179310:exon |
| ATCCATGCCACTACTTGTTA+GGG | 0.450316 | 1_4:+66797136 | None:intergenic |
| TGGGGTGTTGATTTGTGCAT+TGG | 0.461296 | 1_4:+66797268 | None:intergenic |
| TGAGACATTGTAAGATGTAA+TGG | 0.469321 | 1_4:+66796237 | None:intergenic |
| TTTGACTCCGCCATCGCCCT+CGG | 0.482556 | 1_4:-66796326 | Msa0179310:CDS |
| TTCACCAACTTCATCTCCTC+TGG | 0.485231 | 1_4:-66796377 | Msa0179310:CDS |
| CCTCGTGCTTGTAACATGCC+TGG | 0.487865 | 1_4:-66797041 | Msa0179310:CDS |
| ATTCCATCTACATCGACAAC+TGG | 0.490256 | 1_4:-66796292 | Msa0179310:CDS |
| ATGTCACCTAGCAATAATAT+TGG | 0.492160 | 1_4:-66797318 | Msa0179310:CDS |
| GCTTCACCACTTCCTGCTCC+TGG | 0.495227 | 1_4:-66796867 | Msa0179310:intron |
| GAGATGAAGTTGGTGAAGCT+GGG | 0.504474 | 1_4:+66796383 | None:intergenic |
| TGCTAACAACCTTGAGGACT+AGG | 0.508026 | 1_4:+66796528 | None:intergenic |
| GCTAACAACCTTGAGGACTA+GGG | 0.516318 | 1_4:+66796529 | None:intergenic |
| GCATTACCAGGAGCAGGAAG+TGG | 0.522233 | 1_4:+66796861 | None:intergenic |
| AGAGAGTGCTTATTGTAGAA+GGG | 0.525567 | 1_4:+66797240 | None:intergenic |
| TAATGACCAATATTATTGCT+AGG | 0.532925 | 1_4:+66797312 | None:intergenic |
| AATCCTGAGGGAGAAGATGC+AGG | 0.533311 | 1_4:+66796561 | None:intergenic |
| ATTCCAACCCCTAGTCCTCA+AGG | 0.535049 | 1_4:-66796537 | Msa0179310:intron |
| AGCAGGAAGTGGTGAAGCTG+AGG | 0.535400 | 1_4:+66796872 | None:intergenic |
| CCGGAATTCACCGAGGGCGA+TGG | 0.539092 | 1_4:+66796316 | None:intergenic |
| ACTCTCTTCACACCTTGTAT+GGG | 0.540459 | 1_4:-66797224 | Msa0179310:CDS |
| AATTTGGCATTACCAGGAGC+AGG | 0.546347 | 1_4:+66796855 | None:intergenic |
| TTCACAGGTCCTGTGGCTCT+AGG | 0.546401 | 1_4:-66796597 | Msa0179310:intron |
| ATGTATATTCACAGGTCCTG+TGG | 0.548141 | 1_4:-66796604 | Msa0179310:intron |
| ATCCCTAACAAGTAGTGGCA+TGG | 0.551127 | 1_4:-66797138 | Msa0179310:CDS |
| CTTAAATCCCTAACAAGTAG+TGG | 0.551269 | 1_4:-66797143 | Msa0179310:CDS |
| ATTGGTCATTAATATTGTCA+TGG | 0.553363 | 1_4:-66797300 | Msa0179310:CDS |
| TGTCGATGTAGATGGAATAC+CGG | 0.553646 | 1_4:+66796297 | None:intergenic |
| TGAGATGGTCCTAGAGCCAC+AGG | 0.556902 | 1_4:+66796588 | None:intergenic |
| ACTGTTCTATTGATTGCACT+GGG | 0.566423 | 1_4:-66796211 | Msa0179310:CDS |
| CAACCTTGAGGACTAGGGGT+TGG | 0.567019 | 1_4:+66796534 | None:intergenic |
| CCTGTAAGAAAACCCATACA+AGG | 0.567820 | 1_4:+66797212 | None:intergenic |
| GGAACATTTGTGTCTTGTTG+TGG | 0.568188 | 1_4:+66796352 | None:intergenic |
| TAAGATGTAATGGCAGATGA+TGG | 0.568483 | 1_4:+66796247 | None:intergenic |
| TTGCATTGAACTGGAACACC+AGG | 0.568933 | 1_4:+66797023 | None:intergenic |
| GGCGATGGCGGAGTCAAAAG+AGG | 0.572662 | 1_4:+66796331 | None:intergenic |
| AAGAGCACCGCAACATTCAG+TGG | 0.581316 | 1_4:+66797163 | None:intergenic |
| AGGGAACACTAGCAGTTACA+AGG | 0.586483 | 1_4:+66797102 | None:intergenic |
| AGTGCAATCAATAGAACAGT+AGG | 0.586789 | 1_4:+66796214 | None:intergenic |
| GTGTCTTGTTGTGGTGCCAG+AGG | 0.590812 | 1_4:+66796361 | None:intergenic |
| GCACCGCAACATTCAGTGGT+TGG | 0.593515 | 1_4:+66797167 | None:intergenic |
| TCTACATCGACAACTGGAAG+CGG | 0.603015 | 1_4:-66796286 | Msa0179310:CDS |
| GAAGATGCAGGTGAATGAGA+TGG | 0.607870 | 1_4:+66796573 | None:intergenic |
| GAATTCACCGAGGGCGATGG+CGG | 0.615597 | 1_4:+66796319 | None:intergenic |
| TCCTAGTACACAACTAGACA+TGG | 0.620091 | 1_4:-66797357 | Msa0179310:exon |
| GGTGTTCCAGTTCAATGCAA+AGG | 0.630148 | 1_4:-66797020 | Msa0179310:intron |
| CCAGGCATGTTACAAGCACG+AGG | 0.631598 | 1_4:+66797041 | None:intergenic |
| ACGAGGGAGAGAGATAGCTA+AGG | 0.635982 | 1_4:+66797058 | None:intergenic |
| TCACCAACCACTGAATGTTG+CGG | 0.642405 | 1_4:-66797170 | Msa0179310:CDS |
| TTATTGTAGAAGGGTTACAT+GGG | 0.644859 | 1_4:+66797249 | None:intergenic |
| GCAACATTCAGTGGTTGGTG+AGG | 0.651267 | 1_4:+66797172 | None:intergenic |
| GGGGTTGGAATAAATCCTGA+GGG | 0.662198 | 1_4:+66796549 | None:intergenic |
| AGGGGTTGGAATAAATCCTG+AGG | 0.672890 | 1_4:+66796548 | None:intergenic |
| GGTGCCAGAGGAGATGAAGT+TGG | 0.674504 | 1_4:+66796373 | None:intergenic |
| CTAACAACCTTGAGGACTAG+GGG | 0.685774 | 1_4:+66796530 | None:intergenic |
| GGAATACCGGAATTCACCGA+GGG | 0.686162 | 1_4:+66796310 | None:intergenic |
| TATTGTAGAAGGGTTACATG+GGG | 0.692481 | 1_4:+66797250 | None:intergenic |
| TGGTGAAGCTGGGATGTCAG+AGG | 0.694095 | 1_4:+66796393 | None:intergenic |
| TGGAATACCGGAATTCACCG+AGG | 0.697163 | 1_4:+66796309 | None:intergenic |
| CAGGCATGTTACAAGCACGA+GGG | 0.748196 | 1_4:+66797042 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr1_4:66796656-66796675 | None:intergenic | 10.0% |
| !! | AAATTATTGAAATTGAAATT+TGG | + | chr1_4:66796656-66796675 | None:intergenic | 10.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr1_4:66796714-66796733 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr1_4:66796715-66796734 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr1_4:66796862-66796881 | None:intergenic | 15.0% |
| !!! | GTTAGAAAATATTTTTGTTA+GGG | + | chr1_4:66796714-66796733 | None:intergenic | 15.0% |
| !!! | TGTTAGAAAATATTTTTGTT+AGG | + | chr1_4:66796715-66796734 | None:intergenic | 15.0% |
| !! | CATTATTAAGATTAATTCAA+AGG | + | chr1_4:66796862-66796881 | None:intergenic | 15.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr1_4:66797366-66797385 | None:intergenic | 20.0% |
| !! | CATAGCAACAATTTATATAT+AGG | + | chr1_4:66797366-66797385 | None:intergenic | 20.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr1_4:66796086-66796105 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr1_4:66796092-66796111 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr1_4:66796098-66796117 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr1_4:66796183-66796202 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr1_4:66796192-66796211 | Msa0179310:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr1_4:66796412-66796431 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr1_4:66796413-66796432 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | + | chr1_4:66796702-66796721 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr1_4:66796703-66796722 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr1_4:66796846-66796865 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr1_4:66796880-66796899 | Msa0179310:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr1_4:66797072-66797091 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr1_4:66797377-66797396 | Msa0179310:five_prime_UTR | 25.0% |
| !!! | TATGTAATTTTTTTGTGGTG+TGG | - | chr1_4:66797382-66797401 | Msa0179310:five_prime_UTR | 25.0% |
| !!! | TGTAAAATTGGTTTTGGAAT+TGG | + | chr1_4:66796086-66796105 | None:intergenic | 25.0% |
| !!! | AGAAGTTGTAAAATTGGTTT+TGG | + | chr1_4:66796092-66796111 | None:intergenic | 25.0% |
| ! | ATCAAGAGAAGTTGTAAAAT+TGG | + | chr1_4:66796098-66796117 | None:intergenic | 25.0% |
| ! | TAATGACCAATATTATTGCT+AGG | + | chr1_4:66796183-66796202 | None:intergenic | 25.0% |
| ! | ATTGGTCATTAATATTGTCA+TGG | - | chr1_4:66796192-66796211 | Msa0179310:CDS | 25.0% |
| !!! | CTATTGATTGGAATTTTGAA+GGG | + | chr1_4:66796412-66796431 | None:intergenic | 25.0% |
| !!! | TCTATTGATTGGAATTTTGA+AGG | + | chr1_4:66796413-66796432 | None:intergenic | 25.0% |
| !! | TTTTGTTAGGGATTATAGAA+GGG | + | chr1_4:66796702-66796721 | None:intergenic | 25.0% |
| !! | TTTTTGTTAGGGATTATAGA+AGG | + | chr1_4:66796703-66796722 | None:intergenic | 25.0% |
| ! | TCAAAGGAAAAATAGTTTAG+AGG | + | chr1_4:66796846-66796865 | None:intergenic | 25.0% |
| !!! | TGATTTTGATGTATATTCAC+AGG | - | chr1_4:66796880-66796899 | Msa0179310:intron | 25.0% |
| ! | TCAAAGAAAAATGTAAGAGT+TGG | + | chr1_4:66797072-66797091 | None:intergenic | 25.0% |
| !!! | GTTGCTATGTAATTTTTTTG+TGG | - | chr1_4:66797377-66797396 | Msa0179310:five_prime_UTR | 25.0% |
| !!! | TATGTAATTTTTTTGTGGTG+TGG | - | chr1_4:66797382-66797401 | Msa0179310:five_prime_UTR | 25.0% |
| ATGTCACCTAGCAATAATAT+TGG | - | chr1_4:66796174-66796193 | Msa0179310:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr1_4:66796246-66796265 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr1_4:66796424-66796443 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr1_4:66796481-66796500 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr1_4:66796646-66796665 | None:intergenic | 30.0% | |
| CTATCATCTAGTAACATTGT+AGG | - | chr1_4:66796813-66796832 | Msa0179310:intron | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr1_4:66797258-66797277 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr1_4:66797319-66797338 | Msa0179310:CDS | 30.0% | |
| ATGTCACCTAGCAATAATAT+TGG | - | chr1_4:66796174-66796193 | Msa0179310:exon | 30.0% | |
| TTATTGTAGAAGGGTTACAT+GGG | + | chr1_4:66796246-66796265 | None:intergenic | 30.0% | |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr1_4:66796424-66796443 | None:intergenic | 30.0% | |
| ! | TTTTTACCTTTGCATTGAAC+TGG | + | chr1_4:66796481-66796500 | None:intergenic | 30.0% |
| AATTGAAATTTGGCATTACC+AGG | + | chr1_4:66796646-66796665 | None:intergenic | 30.0% | |
| CTATCATCTAGTAACATTGT+AGG | - | chr1_4:66796813-66796832 | Msa0179310:intron | 30.0% | |
| TGAGACATTGTAAGATGTAA+TGG | + | chr1_4:66797258-66797277 | None:intergenic | 30.0% | |
| ATACTACTAGACTCTATGTT+TGG | - | chr1_4:66797319-66797338 | Msa0179310:CDS | 30.0% | |
| GTCATTAATATTGTCATGGC+TGG | - | chr1_4:66796196-66796215 | Msa0179310:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr1_4:66796245-66796264 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr1_4:66796247-66796266 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr1_4:66796255-66796274 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr1_4:66796256-66796275 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr1_4:66796349-66796368 | Msa0179310:CDS | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr1_4:66797248-66797267 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr1_4:66797281-66797300 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr1_4:66797280-66797299 | Msa0179310:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr1_4:66797281-66797300 | Msa0179310:CDS | 35.0% |
| GTCATTAATATTGTCATGGC+TGG | - | chr1_4:66796196-66796215 | Msa0179310:CDS | 35.0% | |
| TATTGTAGAAGGGTTACATG+GGG | + | chr1_4:66796245-66796264 | None:intergenic | 35.0% | |
| CTTATTGTAGAAGGGTTACA+TGG | + | chr1_4:66796247-66796266 | None:intergenic | 35.0% | |
| !! | AGAGAGTGCTTATTGTAGAA+GGG | + | chr1_4:66796255-66796274 | None:intergenic | 35.0% |
| !! | AAGAGAGTGCTTATTGTAGA+AGG | + | chr1_4:66796256-66796275 | None:intergenic | 35.0% |
| CTTAAATCCCTAACAAGTAG+TGG | - | chr1_4:66796349-66796368 | Msa0179310:CDS | 35.0% | |
| TAAGATGTAATGGCAGATGA+TGG | + | chr1_4:66797248-66797267 | None:intergenic | 35.0% | |
| AGTGCAATCAATAGAACAGT+AGG | + | chr1_4:66797281-66797300 | None:intergenic | 35.0% | |
| ! | TACTGTTCTATTGATTGCAC+TGG | - | chr1_4:66797280-66797299 | Msa0179310:CDS | 35.0% |
| ! | ACTGTTCTATTGATTGCACT+GGG | - | chr1_4:66797281-66797300 | Msa0179310:CDS | 35.0% |
| TCCTAGTACACAACTAGACA+TGG | - | chr1_4:66796135-66796154 | Msa0179310:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr1_4:66796268-66796287 | Msa0179310:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr1_4:66796283-66796302 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr1_4:66796280-66796299 | Msa0179310:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr1_4:66796295-66796314 | Msa0179310:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | + | chr1_4:66796359-66796378 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | + | chr1_4:66796360-66796379 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr1_4:66796888-66796907 | Msa0179310:intron | 40.0% | |
| GTGTAATGCTAACAACCTTG+AGG | + | chr1_4:66796973-66796992 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr1_4:66797143-66797162 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr1_4:66797198-66797217 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr1_4:66797200-66797219 | Msa0179310:CDS | 40.0% | |
| TCCTAGTACACAACTAGACA+TGG | - | chr1_4:66796135-66796154 | Msa0179310:three_prime_UTR | 40.0% | |
| ACTCTCTTCACACCTTGTAT+GGG | - | chr1_4:66796268-66796287 | Msa0179310:CDS | 40.0% | |
| CCTGTAAGAAAACCCATACA+AGG | + | chr1_4:66796283-66796302 | None:intergenic | 40.0% | |
| ! | CCTTGTATGGGTTTTCTTAC+AGG | - | chr1_4:66796280-66796299 | Msa0179310:CDS | 40.0% |
| CTTACAGGTAGTAGTGCTAA+TGG | - | chr1_4:66796295-66796314 | Msa0179310:CDS | 40.0% | |
| ! | ATCCATGCCACTACTTGTTA+GGG | + | chr1_4:66796359-66796378 | None:intergenic | 40.0% |
| AATCCATGCCACTACTTGTT+AGG | + | chr1_4:66796360-66796379 | None:intergenic | 40.0% | |
| ATGTATATTCACAGGTCCTG+TGG | - | chr1_4:66796888-66796907 | Msa0179310:intron | 40.0% | |
| GTGTAATGCTAACAACCTTG+AGG | + | chr1_4:66796973-66796992 | None:intergenic | 40.0% | |
| ! | GGAACATTTGTGTCTTGTTG+TGG | + | chr1_4:66797143-66797162 | None:intergenic | 40.0% |
| TGTCGATGTAGATGGAATAC+CGG | + | chr1_4:66797198-66797217 | None:intergenic | 40.0% | |
| ATTCCATCTACATCGACAAC+TGG | - | chr1_4:66797200-66797219 | Msa0179310:CDS | 40.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr1_4:66796139-66796158 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr1_4:66796227-66796246 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr1_4:66796267-66796286 | Msa0179310:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr1_4:66796322-66796341 | Msa0179310:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr1_4:66796354-66796373 | Msa0179310:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr1_4:66796393-66796412 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr1_4:66796472-66796491 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr1_4:66796472-66796491 | Msa0179310:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr1_4:66796640-66796659 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr1_4:66796922-66796941 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr1_4:66796946-66796965 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr1_4:66796947-66796966 | None:intergenic | 45.0% | |
| CTAACAACCTTGAGGACTAG+GGG | + | chr1_4:66796965-66796984 | None:intergenic | 45.0% | |
| GCTAACAACCTTGAGGACTA+GGG | + | chr1_4:66796966-66796985 | None:intergenic | 45.0% | |
| TGCTAACAACCTTGAGGACT+AGG | + | chr1_4:66796967-66796986 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr1_4:66797112-66797131 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr1_4:66797115-66797134 | Msa0179310:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr1_4:66797206-66797225 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr1_4:66797206-66797225 | Msa0179310:CDS | 45.0% | |
| GCCATGTCTAGTTGTGTACT+AGG | + | chr1_4:66796139-66796158 | None:intergenic | 45.0% | |
| !! | TGGGGTGTTGATTTGTGCAT+TGG | + | chr1_4:66796227-66796246 | None:intergenic | 45.0% |
| CACTCTCTTCACACCTTGTA+TGG | - | chr1_4:66796267-66796286 | Msa0179310:CDS | 45.0% | |
| TCACCAACCACTGAATGTTG+CGG | - | chr1_4:66796322-66796341 | Msa0179310:CDS | 45.0% | |
| ATCCCTAACAAGTAGTGGCA+TGG | - | chr1_4:66796354-66796373 | Msa0179310:CDS | 45.0% | |
| AGGGAACACTAGCAGTTACA+AGG | + | chr1_4:66796393-66796412 | None:intergenic | 45.0% | |
| TTGCATTGAACTGGAACACC+AGG | + | chr1_4:66796472-66796491 | None:intergenic | 45.0% | |
| GGTGTTCCAGTTCAATGCAA+AGG | - | chr1_4:66796472-66796491 | Msa0179310:intron | 45.0% | |
| AATTTGGCATTACCAGGAGC+AGG | + | chr1_4:66796640-66796659 | None:intergenic | 45.0% | |
| GAAGATGCAGGTGAATGAGA+TGG | + | chr1_4:66796922-66796941 | None:intergenic | 45.0% | |
| GGGGTTGGAATAAATCCTGA+GGG | + | chr1_4:66796946-66796965 | None:intergenic | 45.0% | |
| AGGGGTTGGAATAAATCCTG+AGG | + | chr1_4:66796947-66796966 | None:intergenic | 45.0% | |
| CTAACAACCTTGAGGACTAG+GGG | + | chr1_4:66796965-66796984 | None:intergenic | 45.0% | |
| GCTAACAACCTTGAGGACTA+GGG | + | chr1_4:66796966-66796985 | None:intergenic | 45.0% | |
| TGCTAACAACCTTGAGGACT+AGG | + | chr1_4:66796967-66796986 | None:intergenic | 45.0% | |
| !! | GAGATGAAGTTGGTGAAGCT+GGG | + | chr1_4:66797112-66797131 | None:intergenic | 45.0% |
| TTCACCAACTTCATCTCCTC+TGG | - | chr1_4:66797115-66797134 | Msa0179310:CDS | 45.0% | |
| CTTCCAGTTGTCGATGTAGA+TGG | + | chr1_4:66797206-66797225 | None:intergenic | 45.0% | |
| TCTACATCGACAACTGGAAG+CGG | - | chr1_4:66797206-66797225 | Msa0179310:CDS | 45.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr1_4:66796323-66796342 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr1_4:66796332-66796351 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr1_4:66796437-66796456 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr1_4:66796453-66796472 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr1_4:66796934-66796953 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr1_4:66796955-66796974 | Msa0179310:intron | 50.0% | |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr1_4:66797113-66797132 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr1_4:66797185-66797204 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr1_4:66797186-66797205 | None:intergenic | 50.0% | |
| ! | GCAACATTCAGTGGTTGGTG+AGG | + | chr1_4:66796323-66796342 | None:intergenic | 50.0% |
| !! | AAGAGCACCGCAACATTCAG+TGG | + | chr1_4:66796332-66796351 | None:intergenic | 50.0% |
| ACGAGGGAGAGAGATAGCTA+AGG | + | chr1_4:66796437-66796456 | None:intergenic | 50.0% | |
| CAGGCATGTTACAAGCACGA+GGG | + | chr1_4:66796453-66796472 | None:intergenic | 50.0% | |
| AATCCTGAGGGAGAAGATGC+AGG | + | chr1_4:66796934-66796953 | None:intergenic | 50.0% | |
| ATTCCAACCCCTAGTCCTCA+AGG | - | chr1_4:66796955-66796974 | Msa0179310:intron | 50.0% | |
| !! | GGAGATGAAGTTGGTGAAGC+TGG | + | chr1_4:66797113-66797132 | None:intergenic | 50.0% |
| GGAATACCGGAATTCACCGA+GGG | + | chr1_4:66797185-66797204 | None:intergenic | 50.0% | |
| TGGAATACCGGAATTCACCG+AGG | + | chr1_4:66797186-66797205 | None:intergenic | 50.0% | |
| GCACCGCAACATTCAGTGGT+TGG | + | chr1_4:66796328-66796347 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr1_4:66796454-66796473 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr1_4:66796451-66796470 | Msa0179310:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr1_4:66796623-66796642 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr1_4:66796634-66796653 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr1_4:66796895-66796914 | Msa0179310:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr1_4:66796907-66796926 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr1_4:66796928-66796947 | Msa0179310:intron | 55.0% | |
| CAACCTTGAGGACTAGGGGT+TGG | + | chr1_4:66796961-66796980 | None:intergenic | 55.0% | |
| TGGTGAAGCTGGGATGTCAG+AGG | + | chr1_4:66797102-66797121 | None:intergenic | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr1_4:66797122-66797141 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr1_4:66797134-66797153 | None:intergenic | 55.0% |
| GCACCGCAACATTCAGTGGT+TGG | + | chr1_4:66796328-66796347 | None:intergenic | 55.0% | |
| CCAGGCATGTTACAAGCACG+AGG | + | chr1_4:66796454-66796473 | None:intergenic | 55.0% | |
| CCTCGTGCTTGTAACATGCC+TGG | - | chr1_4:66796451-66796470 | Msa0179310:intron | 55.0% | |
| AGCAGGAAGTGGTGAAGCTG+AGG | + | chr1_4:66796623-66796642 | None:intergenic | 55.0% | |
| GCATTACCAGGAGCAGGAAG+TGG | + | chr1_4:66796634-66796653 | None:intergenic | 55.0% | |
| TTCACAGGTCCTGTGGCTCT+AGG | - | chr1_4:66796895-66796914 | Msa0179310:intron | 55.0% | |
| TGAGATGGTCCTAGAGCCAC+AGG | + | chr1_4:66796907-66796926 | None:intergenic | 55.0% | |
| TCACCTGCATCTTCTCCCTC+AGG | - | chr1_4:66796928-66796947 | Msa0179310:intron | 55.0% | |
| CAACCTTGAGGACTAGGGGT+TGG | + | chr1_4:66796961-66796980 | None:intergenic | 55.0% | |
| TGGTGAAGCTGGGATGTCAG+AGG | + | chr1_4:66797102-66797121 | None:intergenic | 55.0% | |
| GGTGCCAGAGGAGATGAAGT+TGG | + | chr1_4:66797122-66797141 | None:intergenic | 55.0% | |
| ! | GTGTCTTGTTGTGGTGCCAG+AGG | + | chr1_4:66797134-66797153 | None:intergenic | 55.0% |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr1_4:66796625-66796644 | Msa0179310:intron | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | + | chr1_4:66797164-66797183 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | - | chr1_4:66797166-66797185 | Msa0179310:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | + | chr1_4:66797176-66797195 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr1_4:66797176-66797195 | Msa0179310:CDS | 60.0% | |
| GCTTCACCACTTCCTGCTCC+TGG | - | chr1_4:66796625-66796644 | Msa0179310:intron | 60.0% | |
| !! | GGCGATGGCGGAGTCAAAAG+AGG | + | chr1_4:66797164-66797183 | None:intergenic | 60.0% |
| TTTGACTCCGCCATCGCCCT+CGG | - | chr1_4:66797166-66797185 | Msa0179310:CDS | 60.0% | |
| GAATTCACCGAGGGCGATGG+CGG | + | chr1_4:66797176-66797195 | None:intergenic | 60.0% | |
| CCATCGCCCTCGGTGAATTC+CGG | - | chr1_4:66797176-66797195 | Msa0179310:CDS | 60.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr1_4:66797179-66797198 | None:intergenic | 65.0% | |
| CCGGAATTCACCGAGGGCGA+TGG | + | chr1_4:66797179-66797198 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 66796083 | 66797431 | 66796083 | ID=Msa0179310;Name=Msa0179310 |
| chr1_4 | mRNA | 66796083 | 66797431 | 66796083 | ID=Msa0179310-mRNA-1;Parent=Msa0179310;Name=Msa0179310-mRNA-1;_AED=0.02;_eAED=0.02;_QI=71|1|1|1|1|1|4|103|224 |
| chr1_4 | exon | 66796083 | 66796418 | 66796083 | ID=Msa0179310-mRNA-1:exon:21970;Parent=Msa0179310-mRNA-1 |
| chr1_4 | exon | 66796538 | 66796612 | 66796538 | ID=Msa0179310-mRNA-1:exon:21969;Parent=Msa0179310-mRNA-1 |
| chr1_4 | exon | 66796868 | 66796894 | 66796868 | ID=Msa0179310-mRNA-1:exon:21968;Parent=Msa0179310-mRNA-1 |
| chr1_4 | exon | 66797021 | 66797431 | 66797021 | ID=Msa0179310-mRNA-1:exon:21967;Parent=Msa0179310-mRNA-1 |
| chr1_4 | five_prime_UTR | 66797361 | 66797431 | 66797361 | ID=Msa0179310-mRNA-1:five_prime_utr;Parent=Msa0179310-mRNA-1 |
| chr1_4 | CDS | 66797021 | 66797360 | 66797021 | ID=Msa0179310-mRNA-1:cds;Parent=Msa0179310-mRNA-1 |
| chr1_4 | CDS | 66796868 | 66796894 | 66796868 | ID=Msa0179310-mRNA-1:cds;Parent=Msa0179310-mRNA-1 |
| chr1_4 | CDS | 66796538 | 66796612 | 66796538 | ID=Msa0179310-mRNA-1:cds;Parent=Msa0179310-mRNA-1 |
| chr1_4 | CDS | 66796186 | 66796418 | 66796186 | ID=Msa0179310-mRNA-1:cds;Parent=Msa0179310-mRNA-1 |
| chr1_4 | three_prime_UTR | 66796083 | 66796185 | 66796083 | ID=Msa0179310-mRNA-1:three_prime_utr;Parent=Msa0179310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
