AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1008010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008010 MtrunA17_Chr6g0454031 81.200 250 45 1 1 250 1 248 3.65e-158 439
Msa1008010 MtrunA17_Chr7g0218381 80.400 250 1 1 1 250 1 202 3.39e-142 396
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1008010 AT5G39360.1 76.096 251 57 2 1 250 1 249 3.71e-148 414
Msa1008010 AT5G15440.1 76.016 246 58 1 1 246 1 245 3.23e-143 403
Msa1008010 AT3G63060.1 42.081 221 126 2 23 242 36 255 1.07e-62 197

Find 127 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAATTAATATTCAACTAAA+AGG 0.164816 7_1:-7898646 None:intergenic
TAGTGTTTCATAATTTAAAA+TGG 0.209786 7_1:+7898961 Msa1008010:CDS
CACAACTTCGCTTTACAATA+AGG 0.267149 7_1:-7899446 None:intergenic
AACGATAATGCGACTTTCAT+TGG 0.271652 7_1:+7897716 Msa1008010:five_prime_UTR
CAAGGTGAAGAAGGAGATAT+TGG 0.288349 7_1:+7899329 Msa1008010:CDS
TTCAACTATTACTCCAATTC+AGG 0.290810 7_1:-7899614 None:intergenic
AACCCACCTCTGAGTGGAAT+TGG 0.297718 7_1:-7897026 None:intergenic
CAGCCCAAACCCATCATTAA+TGG 0.299946 7_1:-7897915 None:intergenic
GATGGGAACTGGAGGGCATT+AGG 0.301055 7_1:+7899125 Msa1008010:CDS
AGGCAAATGGTGAGCCTCTT+GGG 0.305235 7_1:+7900773 Msa1008010:three_prime_UTR
TGCAGATCACACAACATCTT+TGG 0.305769 7_1:-7899080 None:intergenic
CAGATTATTTACAAGTTGTT+TGG 0.310423 7_1:-7901164 None:intergenic
AAGACTGTTTGTGGGGCTTA+TGG 0.311944 7_1:+7897974 Msa1008010:five_prime_UTR
ACTTATTTCCATACGCTTGC+AGG 0.313651 7_1:+7898030 Msa1008010:five_prime_UTR
AGCTAATATGAGGGGCAATT+TGG 0.322687 7_1:-7896938 None:intergenic
TTGTGAATATTTGAACTCTT+AGG 0.332759 7_1:+7898220 Msa1008010:five_prime_UTR
CAGAATCAGACAACGGCAAT+AGG 0.334261 7_1:-7899583 None:intergenic
TTCTGAAGAGGCGCCTGAAT+TGG 0.352655 7_1:+7899601 Msa1008010:CDS
ACATCCATTAATGATGGGTT+TGG 0.356850 7_1:+7897911 Msa1008010:five_prime_UTR
CTCTATCATGTGTGTGCAAA+TGG 0.361648 7_1:+7899003 Msa1008010:CDS
CTACAAATTTACAATATGTT+TGG 0.363437 7_1:-7898469 None:intergenic
ACGATTATTTACATCATGTT+TGG 0.365570 7_1:-7901125 None:intergenic
TGCTTCCAGCAGTGTGTTGT+GGG 0.366169 7_1:-7898570 None:intergenic
CAAAGTGATTGAGTATTGTT+TGG 0.369583 7_1:+7898309 Msa1008010:five_prime_UTR
ACAACTTCGCTTTACAATAA+GGG 0.371284 7_1:-7899445 None:intergenic
AATGTCTGGTTGGTATGCTT+TGG 0.390732 7_1:+7900975 Msa1008010:three_prime_UTR
TGCCTCAATGGTCACTTGAT+TGG 0.401501 7_1:+7899551 Msa1008010:CDS
CAAAGTGCTAGCTGCAGGTT+GGG 0.401792 7_1:+7899497 Msa1008010:CDS
TGTATGTTGCTGCTAAAATT+AGG 0.405550 7_1:+7898273 Msa1008010:five_prime_UTR
AATACAACACCTCCAATAGA+TGG 0.406390 7_1:-7900920 None:intergenic
AATTTACAATATGTTTGGTT+TGG 0.410012 7_1:-7898464 None:intergenic
GCCACGTCGTTGATGGGAAC+TGG 0.411747 7_1:+7899114 Msa1008010:CDS
TTGTGTGATCTGCAATCAAC+TGG 0.417058 7_1:+7899089 Msa1008010:CDS
AAGCTTCTTACGTACTGTTC+GGG 0.422997 7_1:+7899149 Msa1008010:CDS
ACTGGGAGCCACGTCGTTGA+TGG 0.424116 7_1:+7899107 Msa1008010:CDS
CATCCATTAATGATGGGTTT+GGG 0.424733 7_1:+7897912 Msa1008010:five_prime_UTR
ATTGGGTTTCTAACTCCGGC+TGG 0.427801 7_1:+7897734 Msa1008010:five_prime_UTR
ATGGGAACTGGAGGGCATTA+GGG 0.429718 7_1:+7899126 Msa1008010:CDS
ATCTTCACTTAGATGCCCTT+TGG 0.429745 7_1:-7898928 None:intergenic
GAAGCTTCTTACGTACTGTT+CGG 0.432478 7_1:+7899148 Msa1008010:CDS
CTAAACACATCCATTAATGA+TGG 0.436220 7_1:+7897905 Msa1008010:five_prime_UTR
TTCTGTAATTATACTTGTGA+TGG 0.437144 7_1:+7898410 Msa1008010:five_prime_UTR
ACGATAATGCGACTTTCATT+GGG 0.438422 7_1:+7897717 Msa1008010:five_prime_UTR
AACCTGCAGCTAGCACTTTG+AGG 0.444997 7_1:-7899494 None:intergenic
TTGTACCGATAGCAATTCCT+TGG 0.446337 7_1:+7897860 Msa1008010:five_prime_UTR
TGATATCTTTCCTCTAATGA+AGG 0.451969 7_1:+7897829 Msa1008010:five_prime_UTR
CTGCTTCCAGCAGTGTGTTG+TGG 0.455287 7_1:-7898571 None:intergenic
GCCTCAATGGTCACTTGATT+GGG 0.456870 7_1:+7899552 Msa1008010:CDS
GTGAAGAATACTCTTTGTAT+AGG 0.460530 7_1:+7900870 Msa1008010:three_prime_UTR
CATCTAGATCAAGGTGAAGA+AGG 0.463015 7_1:+7899320 Msa1008010:CDS
AAGGCAAATGGTGAGCCTCT+TGG 0.463223 7_1:+7900772 Msa1008010:three_prime_UTR
CTCTTTCCATAGAACTCGCT+TGG 0.463797 7_1:-7899039 None:intergenic
GCTTGATGTGCAACGTCAAA+CGG 0.468341 7_1:-7897676 None:intergenic
AAAACACCGTCCTTCATTAG+AGG 0.473973 7_1:-7897839 None:intergenic
ATCTTGCCAAGCGAGTTCTA+TGG 0.476286 7_1:+7899033 Msa1008010:CDS
AAATTAATATTCAACTAAAA+GGG 0.477316 7_1:-7898645 None:intergenic
CATTAATGATGGGTTTGGGC+TGG 0.477597 7_1:+7897916 Msa1008010:five_prime_UTR
ATGTAGCATGATCCATCTAT+TGG 0.479951 7_1:+7900908 Msa1008010:three_prime_UTR
CATCTTGAATTTAGCAGAGT+CGG 0.482579 7_1:-7900746 None:intergenic
AACTTGTGTAAGACTGTTTG+TGG 0.486725 7_1:+7897965 Msa1008010:five_prime_UTR
TCAAAGTGCTAGCTGCAGGT+TGG 0.489268 7_1:+7899496 Msa1008010:CDS
TGTACCGATAGCAATTCCTT+GGG 0.492322 7_1:+7897861 Msa1008010:five_prime_UTR
AGAATCAGACAACGGCAATA+GGG 0.497429 7_1:-7899582 None:intergenic
CAAACAATACTCAATCACTT+TGG 0.501113 7_1:-7898308 None:intergenic
TTCAAGATGAAGAAGGCAAA+TGG 0.503851 7_1:+7900760 Msa1008010:three_prime_UTR
TGAAACCCACAACACACTGC+TGG 0.504466 7_1:+7898565 Msa1008010:five_prime_UTR
CTGGGAGCCACGTCGTTGAT+GGG 0.504476 7_1:+7899108 Msa1008010:CDS
TTTCATTGGGTTTCTAACTC+CGG 0.505320 7_1:+7897730 Msa1008010:five_prime_UTR
AAATTGCCCCTCATATTAGC+TGG 0.506482 7_1:+7896940 Msa1008010:five_prime_UTR
TATGTAAGAACACTTATGCT+TGG 0.512763 7_1:+7901082 Msa1008010:three_prime_UTR
GATAGAGCAGCAATCAGCTT+AGG 0.512808 7_1:-7898987 None:intergenic
TAAACACATCCATTAATGAT+GGG 0.518097 7_1:+7897906 Msa1008010:five_prime_UTR
TTTGACGTTGCACATCAAGC+AGG 0.518359 7_1:+7897679 Msa1008010:five_prime_UTR
TTATTTACAAGTTGTTTGGA+TGG 0.527757 7_1:-7901160 None:intergenic
AGAAAGATGCTTATTAGTAA+AGG 0.529828 7_1:+7899395 Msa1008010:CDS
AACTTGTAAATAATCTGACT+TGG 0.531224 7_1:+7901170 Msa1008010:three_prime_UTR
TTATTTACATCATGTTTGGA+TGG 0.531853 7_1:-7901121 None:intergenic
ACAAACTATACTGATTATGT+TGG 0.537557 7_1:+7901193 Msa1008010:three_prime_UTR
TTCCTCAAAGTGCTAGCTGC+AGG 0.540338 7_1:+7899492 Msa1008010:CDS
TTAACGATCCTGCAAGCGTA+TGG 0.541472 7_1:-7898038 None:intergenic
AAATGGTGAGCCTCTTGGGG+TGG 0.542820 7_1:+7900777 Msa1008010:three_prime_UTR
TGCTAAATTCAAGATGAAGA+AGG 0.543882 7_1:+7900753 Msa1008010:three_prime_UTR
ACTAAAAGGGTTGCAATCCA+TGG 0.544566 7_1:-7898632 None:intergenic
ATTTGGTCAAGAAATGAGTA+AGG 0.545610 7_1:-7896921 None:intergenic
AACTCAACACTTCTCCCAGC+CGG 0.547403 7_1:-7897749 None:intergenic
CTCCCAATTCCACTCAGAGG+TGG 0.547906 7_1:+7897023 Msa1008010:five_prime_UTR
GCCGTTGTCTGATTCTGAAG+AGG 0.548453 7_1:+7899589 Msa1008010:CDS
AACATTCAGAATCAGATCCC+TGG 0.551777 7_1:+7899197 Msa1008010:CDS
TTGGGTTTCTAACTCCGGCT+GGG 0.554045 7_1:+7897735 Msa1008010:five_prime_UTR
TAGATGCAGATCACTTGTGC+AGG 0.554067 7_1:+7900848 Msa1008010:three_prime_UTR
CCTTGTGAGCATCTAGATCA+AGG 0.554478 7_1:+7899311 Msa1008010:CDS
ACTTGTGTAAGACTGTTTGT+GGG 0.554723 7_1:+7897966 Msa1008010:five_prime_UTR
GTCTGATACACAAAGTGACC+AGG 0.560165 7_1:-7899215 None:intergenic
CTAGCTGTCAATGTTCCAAA+GGG 0.560254 7_1:+7898913 Msa1008010:CDS
CCTTGATCTAGATGCTCACA+AGG 0.564697 7_1:-7899311 None:intergenic
TGATGTGCTATCGCGTATGT+TGG 0.566092 7_1:+7900804 Msa1008010:three_prime_UTR
TTCTTGGTTAGCAAACATCA+TGG 0.570595 7_1:-7898806 None:intergenic
GCTAGCTGTCAATGTTCCAA+AGG 0.578026 7_1:+7898912 Msa1008010:CDS
TAAGTCGTTTGCAACGTCAA+AGG 0.578884 7_1:+7899370 Msa1008010:CDS
TCCCAATTCCACTCAGAGGT+GGG 0.582795 7_1:+7897024 Msa1008010:five_prime_UTR
TTAAGCAGTTTATCTAAACA+TGG 0.585305 7_1:+7898174 Msa1008010:five_prime_UTR
CGTTACACTGAACAACAAGC+TGG 0.585680 7_1:-7897625 None:intergenic
TTGACGTTGCACATCAAGCA+GGG 0.587625 7_1:+7897680 Msa1008010:five_prime_UTR
TAGCATGATCCATCTATTGG+AGG 0.588497 7_1:+7900911 Msa1008010:three_prime_UTR
ATCTTTCCTCTAATGAAGGA+CGG 0.589704 7_1:+7897833 Msa1008010:five_prime_UTR
TACTCTTTGTATAGGTGACT+AGG 0.590929 7_1:+7900878 Msa1008010:three_prime_UTR
CTTATTGTAAAGCGAAGTTG+TGG 0.591906 7_1:+7899447 Msa1008010:CDS
ACGTCGTTGATGGGAACTGG+AGG 0.594238 7_1:+7899117 Msa1008010:CDS
GAACTGGTTTGTTAGTACCA+TGG 0.597376 7_1:+7898615 Msa1008010:five_prime_UTR
TATACCCAAGGAATTGCTAT+CGG 0.597827 7_1:-7897865 None:intergenic
TTTGTAAGCACGATATCATG+AGG 0.601873 7_1:-7901244 None:intergenic
AAAACATCAGTTCTGCATTG+TGG 0.613771 7_1:-7899275 None:intergenic
GGCAAATGGTGAGCCTCTTG+GGG 0.617357 7_1:+7900774 Msa1008010:three_prime_UTR
AGCTAGCTGAATGTATGCAT+CGG 0.619048 7_1:-7898896 None:intergenic
TGTTCGGGATGCACGAAAGG+TGG 0.621782 7_1:+7899164 Msa1008010:CDS
CTTGTGTAAGACTGTTTGTG+GGG 0.622230 7_1:+7897967 Msa1008010:five_prime_UTR
GGAGATATTGGATTCTTCCG+CGG 0.632203 7_1:+7899341 Msa1008010:CDS
ACATCATAAACCACCCCAAG+AGG 0.632395 7_1:-7900787 None:intergenic
CACATGAGGGAAATAAAACA+AGG 0.636730 7_1:+7898381 Msa1008010:five_prime_UTR
TCCAGTTCCCATCAACGACG+TGG 0.656887 7_1:-7899115 None:intergenic
CGTCGTTGATGGGAACTGGA+GGG 0.667520 7_1:+7899118 Msa1008010:CDS
TCCCAATCAAGTGACCATTG+AGG 0.669913 7_1:-7899553 None:intergenic
GCCTCTTCAGAATCAGACAA+CGG 0.682457 7_1:-7899590 None:intergenic
TAACTCCCAATTCCACTCAG+AGG 0.699995 7_1:+7897020 Msa1008010:five_prime_UTR
TCTGATACACAAAGTGACCA+GGG 0.703260 7_1:-7899214 None:intergenic
TGTGTGATCTGCAATCAACT+GGG 0.707515 7_1:+7899090 Msa1008010:CDS
GTGCAACGTCAAACGGCATG+TGG 0.713160 7_1:-7897669 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTAATATTCAACTAAAA+GGG - chr7_1:7898648-7898667 None:intergenic 10.0%
!! AAAATTAATATTCAACTAAA+AGG - chr7_1:7898649-7898668 None:intergenic 10.0%
!! TATCAGTTTATAAAAATTCT+TGG - chr7_1:7898825-7898844 None:intergenic 15.0%
!! TAGTGTTTCATAATTTAAAA+TGG + chr7_1:7898961-7898980 Msa1008010:CDS 15.0%
!!! TTTATTTTTTATTTCGTGTA+AGG + chr7_1:7900378-7900397 Msa1008010:intron 15.0%
!!! TGATTTTATTCGATTTGTAT+CGG + chr7_1:7897110-7897129 Msa1008010:intron 20.0%
!!! TTGATTTGCATATAATTGAT+GGG + chr7_1:7897178-7897197 Msa1008010:intron 20.0%
!!! AAAGATATTTTTGTAGAAGA+GGG + chr7_1:7897785-7897804 Msa1008010:five_prime_UTR 20.0%
!!! TAATATTTTAAGAGCTTGTT+TGG + chr7_1:7898343-7898362 Msa1008010:five_prime_UTR 20.0%
!!! AATATTTTAAGAGCTTGTTT+GGG + chr7_1:7898344-7898363 Msa1008010:five_prime_UTR 20.0%
!! AATTTACAATATGTTTGGTT+TGG - chr7_1:7898467-7898486 None:intergenic 20.0%
!! CTACAAATTTACAATATGTT+TGG - chr7_1:7898472-7898491 None:intergenic 20.0%
!!! TGTTTTGCTTAAGTATATAT+TGG + chr7_1:7898668-7898687 Msa1008010:five_prime_UTR 20.0%
!!! ATTTTTCTTTTAGTTTTGCT+AGG + chr7_1:7898845-7898864 Msa1008010:five_prime_UTR 20.0%
!! AACAGAAAAATAGTAAGTAA+TGG - chr7_1:7899672-7899691 None:intergenic 20.0%
!! ATAATCTATGATTTCTTTCT+AGG + chr7_1:7899792-7899811 Msa1008010:intron 20.0%
!! TTTAGACCTAATAATTGATA+GGG - chr7_1:7899851-7899870 None:intergenic 20.0%
!! AAAAGATAGTTAGAAGTAAA+TGG - chr7_1:7899880-7899899 None:intergenic 20.0%
!!! TTTAAAACATGTCTTTTAGA+GGG - chr7_1:7900063-7900082 None:intergenic 20.0%
!!! ATTTAAAACATGTCTTTTAG+AGG - chr7_1:7900064-7900083 None:intergenic 20.0%
!!! ATTTGCTAGTTATATATGTA+AGG + chr7_1:7900577-7900596 Msa1008010:intron 20.0%
!!! ATGTGATTAAATTAGTTTGA+AGG + chr7_1:7900675-7900694 Msa1008010:intron 20.0%
!!! CTTGATTTGCATATAATTGA+TGG + chr7_1:7897177-7897196 Msa1008010:intron 25.0%
! TATAATTGATGGGAAATTTC+TGG + chr7_1:7897188-7897207 Msa1008010:intron 25.0%
! ATAATTGATGGGAAATTTCT+GGG + chr7_1:7897189-7897208 Msa1008010:intron 25.0%
! ATCAACAGTCAATTAATTGA+TGG + chr7_1:7897385-7897404 Msa1008010:intron 25.0%
! TCAACAGTCAATTAATTGAT+GGG + chr7_1:7897386-7897405 Msa1008010:intron 25.0%
!!! CAAAGATATTTTTGTAGAAG+AGG + chr7_1:7897784-7897803 Msa1008010:five_prime_UTR 25.0%
! TGATTACAAAAATATACCCA+AGG - chr7_1:7897880-7897899 None:intergenic 25.0%
! TAAACACATCCATTAATGAT+GGG + chr7_1:7897906-7897925 Msa1008010:five_prime_UTR 25.0%
! TTAAGCAGTTTATCTAAACA+TGG + chr7_1:7898174-7898193 Msa1008010:five_prime_UTR 25.0%
! TTGTGAATATTTGAACTCTT+AGG + chr7_1:7898220-7898239 Msa1008010:five_prime_UTR 25.0%
!!! ATATTTTAAGAGCTTGTTTG+GGG + chr7_1:7898345-7898364 Msa1008010:five_prime_UTR 25.0%
!! ACAAAATTTTGAACACATGA+GGG + chr7_1:7898368-7898387 Msa1008010:five_prime_UTR 25.0%
! TTCTGTAATTATACTTGTGA+TGG + chr7_1:7898410-7898429 Msa1008010:five_prime_UTR 25.0%
!! GTAGTCTTCATTTTCATTTT+TGG + chr7_1:7898488-7898507 Msa1008010:five_prime_UTR 25.0%
!!! TCATTTTTGTTTTCTTGAAC+TGG + chr7_1:7898599-7898618 Msa1008010:five_prime_UTR 25.0%
! AGAAAGATGCTTATTAGTAA+AGG + chr7_1:7899395-7899414 Msa1008010:CDS 25.0%
!! GTAATAGTTGAATGATTTTC+AGG + chr7_1:7899625-7899644 Msa1008010:exon 25.0%
! GTAAATCCCTATCAATTATT+AGG + chr7_1:7899842-7899861 Msa1008010:intron 25.0%
! CTTTAGACCTAATAATTGAT+AGG - chr7_1:7899852-7899871 None:intergenic 25.0%
!! CTAACTATCTTTTTCTGATT+TGG + chr7_1:7899887-7899906 Msa1008010:intron 25.0%
!! AAAATCAAAGACAAGAGTAT+AGG - chr7_1:7899934-7899953 None:intergenic 25.0%
! AATCATTAGAGAGAAAAAGA+TGG - chr7_1:7900138-7900157 None:intergenic 25.0%
! AAATTGTATGTTGAATTCAG+TGG + chr7_1:7900309-7900328 Msa1008010:intron 25.0%
!! CTCATTAGATATTTTGCAAA+TGG + chr7_1:7900425-7900444 Msa1008010:intron 25.0%
! AATTACTATAATTGCACTAG+TGG + chr7_1:7900460-7900479 Msa1008010:intron 25.0%
! AGGATGTATCTGATTATATT+TGG + chr7_1:7900597-7900616 Msa1008010:intron 25.0%
!! ATTCTATCATTTTCAATGTC+TGG + chr7_1:7900961-7900980 Msa1008010:three_prime_UTR 25.0%
! TTATTTACATCATGTTTGGA+TGG - chr7_1:7901124-7901143 None:intergenic 25.0%
! ACGATTATTTACATCATGTT+TGG - chr7_1:7901128-7901147 None:intergenic 25.0%
! TTATTTACAAGTTGTTTGGA+TGG - chr7_1:7901163-7901182 None:intergenic 25.0%
! CAGATTATTTACAAGTTGTT+TGG - chr7_1:7901167-7901186 None:intergenic 25.0%
! AACTTGTAAATAATCTGACT+TGG + chr7_1:7901170-7901189 Msa1008010:three_prime_UTR 25.0%
!! ACAAACTATACTGATTATGT+TGG + chr7_1:7901193-7901212 Msa1008010:three_prime_UTR 25.0%
ATTTGGTCAAGAAATGAGTA+AGG - chr7_1:7896924-7896943 None:intergenic 30.0%
! AATTTTCCAGCTAATATGAG+GGG - chr7_1:7896949-7896968 None:intergenic 30.0%
! CAATTTTCCAGCTAATATGA+GGG - chr7_1:7896950-7896969 None:intergenic 30.0%
TTATAGCTAGCTGATAACTT+TGG + chr7_1:7897338-7897357 Msa1008010:intron 30.0%
TGATATCTTTCCTCTAATGA+AGG + chr7_1:7897829-7897848 Msa1008010:five_prime_UTR 30.0%
CTAAACACATCCATTAATGA+TGG + chr7_1:7897905-7897924 Msa1008010:five_prime_UTR 30.0%
! TGGCTTTTATGTATGATTTG+AGG + chr7_1:7898194-7898213 Msa1008010:five_prime_UTR 30.0%
! GGCTTTTATGTATGATTTGA+GGG + chr7_1:7898195-7898214 Msa1008010:five_prime_UTR 30.0%
TGTATGTTGCTGCTAAAATT+AGG + chr7_1:7898273-7898292 Msa1008010:five_prime_UTR 30.0%
CAAACAATACTCAATCACTT+TGG - chr7_1:7898311-7898330 None:intergenic 30.0%
! CAAAGTGATTGAGTATTGTT+TGG + chr7_1:7898309-7898328 Msa1008010:five_prime_UTR 30.0%
! GACAAAATTTTGAACACATG+AGG + chr7_1:7898367-7898386 Msa1008010:five_prime_UTR 30.0%
!! GTGTTTGAGTTTTGTCTATT+TGG + chr7_1:7898777-7898796 Msa1008010:five_prime_UTR 30.0%
ACAACTTCGCTTTACAATAA+GGG - chr7_1:7899448-7899467 None:intergenic 30.0%
TTCAACTATTACTCCAATTC+AGG - chr7_1:7899617-7899636 None:intergenic 30.0%
!! TTCAGGTATTTTTGTGTATC+TGG + chr7_1:7899642-7899661 Msa1008010:intron 30.0%
!! CTTTACTTTTCTTTGAGAAC+TGG + chr7_1:7899695-7899714 Msa1008010:intron 30.0%
TCTATGATTTCTTTCTAGGT+AGG + chr7_1:7899796-7899815 Msa1008010:intron 30.0%
CTATGATTTCTTTCTAGGTA+GGG + chr7_1:7899797-7899816 Msa1008010:intron 30.0%
GGAAGACTAAGGAAAAATAT+GGG - chr7_1:7899913-7899932 None:intergenic 30.0%
AGGAAGACTAAGGAAAAATA+TGG - chr7_1:7899914-7899933 None:intergenic 30.0%
!! TCATAGTTTTCTGTTGCTTA+GGG - chr7_1:7900005-7900024 None:intergenic 30.0%
!! TTCATAGTTTTCTGTTGCTT+AGG - chr7_1:7900006-7900025 None:intergenic 30.0%
AATGCTACACAAGATAAGAT+AGG - chr7_1:7900172-7900191 None:intergenic 30.0%
AATATTAGCATGTGATACAC+AGG - chr7_1:7900357-7900376 None:intergenic 30.0%
TGTTCAAAACAGTTTGACAA+TGG - chr7_1:7900506-7900525 None:intergenic 30.0%
AATGATTAGCAACTATCTTC+TGG + chr7_1:7900622-7900641 Msa1008010:intron 30.0%
ATACAATTAACCTGTTACTG+AGG - chr7_1:7900650-7900669 None:intergenic 30.0%
TGCTAAATTCAAGATGAAGA+AGG + chr7_1:7900753-7900772 Msa1008010:three_prime_UTR 30.0%
GTGAAGAATACTCTTTGTAT+AGG + chr7_1:7900870-7900889 Msa1008010:three_prime_UTR 30.0%
! TATCATTTTCAATGTCTGGT+TGG + chr7_1:7900965-7900984 Msa1008010:three_prime_UTR 30.0%
TATGTAAGAACACTTATGCT+TGG + chr7_1:7901082-7901101 Msa1008010:three_prime_UTR 30.0%
! GCAATTTTCCAGCTAATATG+AGG - chr7_1:7896951-7896970 None:intergenic 35.0%
TTCTGGGTGATCTATGATAT+TGG + chr7_1:7897205-7897224 Msa1008010:intron 35.0%
TCTGGGTGATCTATGATATT+GGG + chr7_1:7897206-7897225 Msa1008010:intron 35.0%
GTTACTGTCATTAAATGTCG+CGG + chr7_1:7897460-7897479 Msa1008010:intron 35.0%
AGCTACAACAGAGAAAAATG+TGG - chr7_1:7897570-7897589 None:intergenic 35.0%
AACGATAATGCGACTTTCAT+TGG + chr7_1:7897716-7897735 Msa1008010:five_prime_UTR 35.0%
ACGATAATGCGACTTTCATT+GGG + chr7_1:7897717-7897736 Msa1008010:five_prime_UTR 35.0%
TTTCATTGGGTTTCTAACTC+CGG + chr7_1:7897730-7897749 Msa1008010:five_prime_UTR 35.0%
ATCTTTCCTCTAATGAAGGA+CGG + chr7_1:7897833-7897852 Msa1008010:five_prime_UTR 35.0%
TATACCCAAGGAATTGCTAT+CGG - chr7_1:7897868-7897887 None:intergenic 35.0%
!! ACATCCATTAATGATGGGTT+TGG + chr7_1:7897911-7897930 Msa1008010:five_prime_UTR 35.0%
!! CATCCATTAATGATGGGTTT+GGG + chr7_1:7897912-7897931 Msa1008010:five_prime_UTR 35.0%
AACTTGTGTAAGACTGTTTG+TGG + chr7_1:7897965-7897984 Msa1008010:five_prime_UTR 35.0%
ACTTGTGTAAGACTGTTTGT+GGG + chr7_1:7897966-7897985 Msa1008010:five_prime_UTR 35.0%
CACATGAGGGAAATAAAACA+AGG + chr7_1:7898381-7898400 Msa1008010:five_prime_UTR 35.0%
TTCTTGGTTAGCAAACATCA+TGG - chr7_1:7898809-7898828 None:intergenic 35.0%
!!! ACTCGATTTTCTAGAACATC+AGG + chr7_1:7899236-7899255 Msa1008010:CDS 35.0%
!!! CTCGATTTTCTAGAACATCA+GGG + chr7_1:7899237-7899256 Msa1008010:CDS 35.0%
AAAACATCAGTTCTGCATTG+TGG - chr7_1:7899278-7899297 None:intergenic 35.0%
CACAACTTCGCTTTACAATA+AGG - chr7_1:7899449-7899468 None:intergenic 35.0%
CTTATTGTAAAGCGAAGTTG+TGG + chr7_1:7899447-7899466 Msa1008010:CDS 35.0%
! GATCCATTTTGAATGTTAGC+AGG + chr7_1:7899717-7899736 Msa1008010:intron 35.0%
CTACCTGCTAACATTCAAAA+TGG - chr7_1:7899723-7899742 None:intergenic 35.0%
! ACAAGAGTATAGGAAGACTA+AGG - chr7_1:7899924-7899943 None:intergenic 35.0%
! GATTTTCTGACTTTTCCACA+TGG + chr7_1:7899948-7899967 Msa1008010:intron 35.0%
!! ATAGTTTTCTGTTGCTTAGG+GGG - chr7_1:7900003-7900022 None:intergenic 35.0%
!! CATAGTTTTCTGTTGCTTAG+GGG - chr7_1:7900004-7900023 None:intergenic 35.0%
CATCAAGCGAAAAAAAGTTG+AGG - chr7_1:7900089-7900108 None:intergenic 35.0%
AGATGGTACAATCTCATCTT+AGG - chr7_1:7900121-7900140 None:intergenic 35.0%
CATGTGATACACAGGAAAAA+AGG - chr7_1:7900349-7900368 None:intergenic 35.0%
ATTGAGTCAATGGTTAGTGA+TGG + chr7_1:7900401-7900420 Msa1008010:intron 35.0%
AGCAAATAGAGAACAGTAGA+AGG - chr7_1:7900564-7900583 None:intergenic 35.0%
CATCTTGAATTTAGCAGAGT+CGG - chr7_1:7900749-7900768 None:intergenic 35.0%
TTCAAGATGAAGAAGGCAAA+TGG + chr7_1:7900760-7900779 Msa1008010:three_prime_UTR 35.0%
TATCGCGTATGTTGGAAAAA+TGG + chr7_1:7900812-7900831 Msa1008010:three_prime_UTR 35.0%
TACTCTTTGTATAGGTGACT+AGG + chr7_1:7900878-7900897 Msa1008010:three_prime_UTR 35.0%
ATGTAGCATGATCCATCTAT+TGG + chr7_1:7900908-7900927 Msa1008010:three_prime_UTR 35.0%
AATACAACACCTCCAATAGA+TGG - chr7_1:7900923-7900942 None:intergenic 35.0%
AGCTAATATGAGGGGCAATT+TGG - chr7_1:7896941-7896960 None:intergenic 40.0%
AAATTGCCCCTCATATTAGC+TGG + chr7_1:7896940-7896959 Msa1008010:five_prime_UTR 40.0%
GTGATCTATGATATTGGGAC+TGG + chr7_1:7897211-7897230 Msa1008010:intron 40.0%
AAAACACCGTCCTTCATTAG+AGG - chr7_1:7897842-7897861 None:intergenic 40.0%
! TTGTACCGATAGCAATTCCT+TGG + chr7_1:7897860-7897879 Msa1008010:five_prime_UTR 40.0%
! TGTACCGATAGCAATTCCTT+GGG + chr7_1:7897861-7897880 Msa1008010:five_prime_UTR 40.0%
CTTGTGTAAGACTGTTTGTG+GGG + chr7_1:7897967-7897986 Msa1008010:five_prime_UTR 40.0%
ACTTATTTCCATACGCTTGC+AGG + chr7_1:7898030-7898049 Msa1008010:five_prime_UTR 40.0%
!! GAACTGGTTTGTTAGTACCA+TGG + chr7_1:7898615-7898634 Msa1008010:five_prime_UTR 40.0%
ACTAAAAGGGTTGCAATCCA+TGG - chr7_1:7898635-7898654 None:intergenic 40.0%
AGCTAGCTGAATGTATGCAT+CGG - chr7_1:7898899-7898918 None:intergenic 40.0%
CTAGCTGTCAATGTTCCAAA+GGG + chr7_1:7898913-7898932 Msa1008010:CDS 40.0%
ATCTTCACTTAGATGCCCTT+TGG - chr7_1:7898931-7898950 None:intergenic 40.0%
CTCTATCATGTGTGTGCAAA+TGG + chr7_1:7899003-7899022 Msa1008010:CDS 40.0%
TGCAGATCACACAACATCTT+TGG - chr7_1:7899083-7899102 None:intergenic 40.0%
TTGTGTGATCTGCAATCAAC+TGG + chr7_1:7899089-7899108 Msa1008010:CDS 40.0%
TGTGTGATCTGCAATCAACT+GGG + chr7_1:7899090-7899109 Msa1008010:CDS 40.0%
GAAGCTTCTTACGTACTGTT+CGG + chr7_1:7899148-7899167 Msa1008010:CDS 40.0%
AAGCTTCTTACGTACTGTTC+GGG + chr7_1:7899149-7899168 Msa1008010:CDS 40.0%
AACATTCAGAATCAGATCCC+TGG + chr7_1:7899197-7899216 Msa1008010:CDS 40.0%
TCTGATACACAAAGTGACCA+GGG - chr7_1:7899217-7899236 None:intergenic 40.0%
CATCTAGATCAAGGTGAAGA+AGG + chr7_1:7899320-7899339 Msa1008010:CDS 40.0%
CAAGGTGAAGAAGGAGATAT+TGG + chr7_1:7899329-7899348 Msa1008010:CDS 40.0%
CAAACGACTTAAAAACTCCG+CGG - chr7_1:7899361-7899380 None:intergenic 40.0%
TAAGTCGTTTGCAACGTCAA+AGG + chr7_1:7899370-7899389 Msa1008010:CDS 40.0%
! GAGTATTTTGTGTGCCTCAA+TGG + chr7_1:7899539-7899558 Msa1008010:CDS 40.0%
AGAATCAGACAACGGCAATA+GGG - chr7_1:7899585-7899604 None:intergenic 40.0%
GATTTCTTTCTAGGTAGGGT+CGG + chr7_1:7899801-7899820 Msa1008010:intron 40.0%
!! CATGTCTTTTAGAGGGAATG+CGG - chr7_1:7900056-7900075 None:intergenic 40.0%
TGGTACAATCTCATCTTAGG+TGG - chr7_1:7900118-7900137 None:intergenic 40.0%
CTCAAGTAATGTCTTACTCG+AGG - chr7_1:7900288-7900307 None:intergenic 40.0%
TCGTGTAAGGATTGAGTCAA+TGG + chr7_1:7900391-7900410 Msa1008010:intron 40.0%
ATAGAGAACAGTAGAAGGTC+TGG - chr7_1:7900559-7900578 None:intergenic 40.0%
TAGCATGATCCATCTATTGG+AGG + chr7_1:7900911-7900930 Msa1008010:three_prime_UTR 40.0%
! AATGTCTGGTTGGTATGCTT+TGG + chr7_1:7900975-7900994 Msa1008010:three_prime_UTR 40.0%
TAACTCCCAATTCCACTCAG+AGG + chr7_1:7897020-7897039 Msa1008010:five_prime_UTR 45.0%
TAGAAAAACCCACCTCTGAG+TGG - chr7_1:7897035-7897054 None:intergenic 45.0%
!! ACTCAGAGGTGGGTTTTTCT+AGG + chr7_1:7897034-7897053 Msa1008010:five_prime_UTR 45.0%
!! CTCAGAGGTGGGTTTTTCTA+GGG + chr7_1:7897035-7897054 Msa1008010:five_prime_UTR 45.0%
!!! TGGGTTTTTCTAGGGTTTCG+AGG + chr7_1:7897043-7897062 Msa1008010:five_prime_UTR 45.0%
! GGTCATTGATTGCAGACGAA+AGG + chr7_1:7897481-7897500 Msa1008010:intron 45.0%
CGTTACACTGAACAACAAGC+TGG - chr7_1:7897628-7897647 None:intergenic 45.0%
GCTTGATGTGCAACGTCAAA+CGG - chr7_1:7897679-7897698 None:intergenic 45.0%
TTTGACGTTGCACATCAAGC+AGG + chr7_1:7897679-7897698 Msa1008010:five_prime_UTR 45.0%
TTGACGTTGCACATCAAGCA+GGG + chr7_1:7897680-7897699 Msa1008010:five_prime_UTR 45.0%
CAGCCCAAACCCATCATTAA+TGG - chr7_1:7897918-7897937 None:intergenic 45.0%
!! CATTAATGATGGGTTTGGGC+TGG + chr7_1:7897916-7897935 Msa1008010:five_prime_UTR 45.0%
AAGACTGTTTGTGGGGCTTA+TGG + chr7_1:7897974-7897993 Msa1008010:five_prime_UTR 45.0%
TTAACGATCCTGCAAGCGTA+TGG - chr7_1:7898041-7898060 None:intergenic 45.0%
GCTAGCTGTCAATGTTCCAA+AGG + chr7_1:7898912-7898931 Msa1008010:CDS 45.0%
GATAGAGCAGCAATCAGCTT+AGG - chr7_1:7898990-7899009 None:intergenic 45.0%
ATCTTGCCAAGCGAGTTCTA+TGG + chr7_1:7899033-7899052 Msa1008010:CDS 45.0%
CTCTTTCCATAGAACTCGCT+TGG - chr7_1:7899042-7899061 None:intergenic 45.0%
GTCTGATACACAAAGTGACC+AGG - chr7_1:7899218-7899237 None:intergenic 45.0%
CCTTGATCTAGATGCTCACA+AGG - chr7_1:7899314-7899333 None:intergenic 45.0%
CCTTGTGAGCATCTAGATCA+AGG + chr7_1:7899311-7899330 Msa1008010:CDS 45.0%
GGAGATATTGGATTCTTCCG+CGG + chr7_1:7899341-7899360 Msa1008010:CDS 45.0%
TGCCTCAATGGTCACTTGAT+TGG + chr7_1:7899551-7899570 Msa1008010:CDS 45.0%
GCCTCAATGGTCACTTGATT+GGG + chr7_1:7899552-7899571 Msa1008010:CDS 45.0%
TCCCAATCAAGTGACCATTG+AGG - chr7_1:7899556-7899575 None:intergenic 45.0%
CAGAATCAGACAACGGCAAT+AGG - chr7_1:7899586-7899605 None:intergenic 45.0%
GCCTCTTCAGAATCAGACAA+CGG - chr7_1:7899593-7899612 None:intergenic 45.0%
TCTAGGTAGGGTCGGTTATA+TGG + chr7_1:7899809-7899828 Msa1008010:intron 45.0%
GGAACCATGCATAGCTCAAT+AGG + chr7_1:7899969-7899988 Msa1008010:intron 45.0%
CACTCCTATTGAGCTATGCA+TGG - chr7_1:7899976-7899995 None:intergenic 45.0%
CATGCATAGCTCAATAGGAG+TGG + chr7_1:7899974-7899993 Msa1008010:intron 45.0%
TCTTCTGGTACCTCAGTAAC+AGG + chr7_1:7900637-7900656 Msa1008010:intron 45.0%
ACATCATAAACCACCCCAAG+AGG - chr7_1:7900790-7900809 None:intergenic 45.0%
TGATGTGCTATCGCGTATGT+TGG + chr7_1:7900804-7900823 Msa1008010:three_prime_UTR 45.0%
TAGATGCAGATCACTTGTGC+AGG + chr7_1:7900848-7900867 Msa1008010:three_prime_UTR 45.0%
TCCCAATTCCACTCAGAGGT+GGG + chr7_1:7897024-7897043 Msa1008010:five_prime_UTR 50.0%
ACCCACCTCTGAGTGGAATT+GGG - chr7_1:7897028-7897047 None:intergenic 50.0%
AACCCACCTCTGAGTGGAAT+TGG - chr7_1:7897029-7897048 None:intergenic 50.0%
!! GATATTGGGACTGGTCGATG+TGG + chr7_1:7897220-7897239 Msa1008010:intron 50.0%
ATTGGGTTTCTAACTCCGGC+TGG + chr7_1:7897734-7897753 Msa1008010:five_prime_UTR 50.0%
TTGGGTTTCTAACTCCGGCT+GGG + chr7_1:7897735-7897754 Msa1008010:five_prime_UTR 50.0%
AACTCAACACTTCTCCCAGC+CGG - chr7_1:7897752-7897771 None:intergenic 50.0%
TGAAACCCACAACACACTGC+TGG + chr7_1:7898565-7898584 Msa1008010:five_prime_UTR 50.0%
TGCTTCCAGCAGTGTGTTGT+GGG - chr7_1:7898573-7898592 None:intergenic 50.0%
!! ATGGGAACTGGAGGGCATTA+GGG + chr7_1:7899126-7899145 Msa1008010:CDS 50.0%
TACTGTTCGGGATGCACGAA+AGG + chr7_1:7899161-7899180 Msa1008010:CDS 50.0%
! TTCCTCAAAGTGCTAGCTGC+AGG + chr7_1:7899492-7899511 Msa1008010:CDS 50.0%
AACCTGCAGCTAGCACTTTG+AGG - chr7_1:7899497-7899516 None:intergenic 50.0%
! TCAAAGTGCTAGCTGCAGGT+TGG + chr7_1:7899496-7899515 Msa1008010:CDS 50.0%
! CAAAGTGCTAGCTGCAGGTT+GGG + chr7_1:7899497-7899516 Msa1008010:CDS 50.0%
! GCCGTTGTCTGATTCTGAAG+AGG + chr7_1:7899589-7899608 Msa1008010:CDS 50.0%
!! TTCTGAAGAGGCGCCTGAAT+TGG + chr7_1:7899601-7899620 Msa1008010:CDS 50.0%
GAGCTATGCATGGTTCCATG+TGG - chr7_1:7899966-7899985 None:intergenic 50.0%
AAGGCAAATGGTGAGCCTCT+TGG + chr7_1:7900772-7900791 Msa1008010:three_prime_UTR 50.0%
AGGCAAATGGTGAGCCTCTT+GGG + chr7_1:7900773-7900792 Msa1008010:three_prime_UTR 50.0%
CTCCCAATTCCACTCAGAGG+TGG + chr7_1:7897023-7897042 Msa1008010:five_prime_UTR 55.0%
GTGCAACGTCAAACGGCATG+TGG - chr7_1:7897672-7897691 None:intergenic 55.0%
CTGCTTCCAGCAGTGTGTTG+TGG - chr7_1:7898574-7898593 None:intergenic 55.0%
TCCAGTTCCCATCAACGACG+TGG - chr7_1:7899118-7899137 None:intergenic 55.0%
! ACGTCGTTGATGGGAACTGG+AGG + chr7_1:7899117-7899136 Msa1008010:CDS 55.0%
! CGTCGTTGATGGGAACTGGA+GGG + chr7_1:7899118-7899137 Msa1008010:CDS 55.0%
!! GATGGGAACTGGAGGGCATT+AGG + chr7_1:7899125-7899144 Msa1008010:CDS 55.0%
TGTTCGGGATGCACGAAAGG+TGG + chr7_1:7899164-7899183 Msa1008010:CDS 55.0%
GGCAAATGGTGAGCCTCTTG+GGG + chr7_1:7900774-7900793 Msa1008010:three_prime_UTR 55.0%
AAATGGTGAGCCTCTTGGGG+TGG + chr7_1:7900777-7900796 Msa1008010:three_prime_UTR 55.0%
ACTGGGAGCCACGTCGTTGA+TGG + chr7_1:7899107-7899126 Msa1008010:CDS 60.0%
CTGGGAGCCACGTCGTTGAT+GGG + chr7_1:7899108-7899127 Msa1008010:CDS 60.0%
! GCCACGTCGTTGATGGGAAC+TGG + chr7_1:7899114-7899133 Msa1008010:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 7896890 7901258 7896890 ID=Msa1008010;Name=Msa1008010
chr7_1 mRNA 7896890 7901258 7896890 ID=Msa1008010-mRNA-1;Parent=Msa1008010;Name=Msa1008010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1463|1|1|1|0|0|3|546|250
chr7_1 exon 7896890 7897064 7896890 ID=Msa1008010-mRNA-1:exon:2370;Parent=Msa1008010-mRNA-1
chr7_1 exon 7897588 7899646 7897588 ID=Msa1008010-mRNA-1:exon:2371;Parent=Msa1008010-mRNA-1
chr7_1 exon 7900731 7901258 7900731 ID=Msa1008010-mRNA-1:exon:2372;Parent=Msa1008010-mRNA-1
chr7_1 five_prime_UTR 7896890 7897064 7896890 ID=Msa1008010-mRNA-1:five_prime_utr;Parent=Msa1008010-mRNA-1
chr7_1 five_prime_UTR 7897588 7898875 7897588 ID=Msa1008010-mRNA-1:five_prime_utr;Parent=Msa1008010-mRNA-1
chr7_1 CDS 7898876 7899628 7898876 ID=Msa1008010-mRNA-1:cds;Parent=Msa1008010-mRNA-1
chr7_1 three_prime_UTR 7899629 7899646 7899629 ID=Msa1008010-mRNA-1:three_prime_utr;Parent=Msa1008010-mRNA-1
chr7_1 three_prime_UTR 7900731 7901258 7900731 ID=Msa1008010-mRNA-1:three_prime_utr;Parent=Msa1008010-mRNA-1
Gene Sequence

>Msa1008010

ATGATTATCACAAAGCAGTACCGATGCATACATTCAGCTAGCTGTCAATGTTCCAAAGGGCATCTAAGTGAAGATGCGATTTTCTTAGTGTTTCATAATTTAAAATGGAATCCTAAGCTGATTGCTGCTCTATCATGTGTGTGCAAATGGTTTGACGATCTTGCCAAGCGAGTTCTATGGAAAGAGTTTTGTCGAACAAGAGCTCCAAAGATGTTGTGTGATCTGCAATCAACTGGGAGCCACGTCGTTGATGGGAACTGGAGGGCATTAGGGAAGCTTCTTACGTACTGTTCGGGATGCACGAAAGGTGGCTTGTTTAAAAACATTCAGAATCAGATCCCTGGTCACTTTGTGTATCAGACTCGATTTTCTAGAACATCAGGGAAGAGCTTTCTTTTGCCACAATGCAGAACTGATGTTTTGTATGTATCTGATCCTTGTGAGCATCTAGATCAAGGTGAAGAAGGAGATATTGGATTCTTCCGCGGAGTTTTTAAGTCGTTTGCAACGTCAAAGGTCAGAAAGATGCTTATTAGTAAAGGTGCTAAGCTTCATCAAACAGAAGTTTGCCCTTATTGTAAAGCGAAGTTGTGGAACATGCAGCAAGCTAAAATGATTCCTCAAAGTGCTAGCTGCAGGTTGGGTTCTTATGAAGATGATATCGAGTATTTTGTGTGCCTCAATGGTCACTTGATTGGGATATGTACCCTATTGCCGTTGTCTGATTCTGAAGAGGCGCCTGAATTGGAGTAA
Protein sequence

>Msa1008010

MIITKQYRCIHSASCQCSKGHLSEDAIFLVFHNLKWNPKLIAALSCVCKWFDDLAKRVLWKEFCRTRAPKMLCDLQSTGSHVVDGNWRALGKLLTYCSGCTKGGLFKNIQNQIPGHFVYQTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGAKLHQTEVCPYCKAKLWNMQQAKMIPQSASCRLGSYEDDIEYFVCLNGHLIGICTLLPLSDSEEAPELE*