AlfalfaGEDB | Msa1045110

M. sativa cultivar zhongmu-4 / Msa1045110

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045110	XP_003621387.1	100.000	250	0	0	1	250	1	250	0.0	521

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045110	sp\|Q9FLZ8\|EDL2_ARATH	76.494	251	56	2	1	250	1	249	1.59e-147	414

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045110	B7FI24	100.000	250	0	0	1	250	1	250	0.0	521

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0191890	Msa1045110	0.817204	3.723328e-52	-8.615850e-47
Msa0259210	Msa1045110	0.806497	7.993835e-50	-8.615850e-47
Msa0312530	Msa1045110	0.821086	4.868423e-53	-8.615850e-47
Msa0336320	Msa1045110	0.807926	3.981358e-50	-8.615850e-47
Msa0343850	Msa1045110	0.805294	1.431083e-49	-8.615850e-47
Msa0436370	Msa1045110	0.817315	3.515583e-52	-8.615850e-47
Msa0476680	Msa1045110	0.801483	8.814232e-49	-8.615850e-47
Msa0572480	Msa1045110	0.818001	2.461497e-52	-8.615850e-47
Msa0711790	Msa1045110	0.808088	3.677262e-50	-8.615850e-47
Msa0808100	Msa1045110	0.812811	3.513943e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045110	MtrunA17_Chr6g0454031	81.600	250	44	1	1	250	1	248	7.96e-159	440
Msa1045110	MtrunA17_Chr7g0218381	80.800	250	0	1	1	250	1	202	9.41e-143	398

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1045110	AT5G39360.1	76.494	251	56	2	1	250	1	249	1.61e-148	414
Msa1045110	AT5G15440.1	76.423	246	57	1	1	246	1	245	9.89e-144	404
Msa1045110	AT3G63060.1	42.534	221	125	2	23	242	36	255	3.90e-63	199

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Find 127 sgRNAs with CRISPR-Local

Find 227 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACACCGTCCTTCATTAG+AGG	0.473973	7_2:+4289216	None:intergenic
AAAACATCAGTTCTGCATTG+TGG	0.613771	7_2:+4287775	None:intergenic
AAAATTAATATTCAACTAAA+AGG	0.164816	7_2:+4288404	None:intergenic
AAATGGTGAGCCTCTTGGGG+TGG	0.542820	7_2:-4286273	Msa1045110:three_prime_UTR
AAATTAATATTCAACTAAAA+GGG	0.477316	7_2:+4288405	None:intergenic
AAATTGCCCCTCATATTAGC+TGG	0.506482	7_2:-4290117	Msa1045110:five_prime_UTR
AACATTCAGAATCAGATCCC+TGG	0.551777	7_2:-4287853	Msa1045110:CDS
AACCTGCAGCTAGCACTTTG+AGG	0.444997	7_2:+4287556	None:intergenic
AACGATAATGCGACTTTCAT+TGG	0.271652	7_2:-4289339	Msa1045110:five_prime_UTR
AACTCAACACTTCTCCCAGC+CGG	0.547403	7_2:+4289306	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTTGGTCAAGAAATGAGTA+AGG	+	chr7_2:4285848-4285867	None:intergenic	30.0%
TTATAGCTAGCTGATAACTT+TGG	-	chr7_2:4286264-4286283	Msa1045110:three_prime_UTR	30.0%
ATCAGCAGTCAATTAATTGA+TGG	-	chr7_2:4286311-4286330	Msa1045110:three_prime_UTR	30.0%
TCAGCAGTCAATTAATTGAT+GGG	-	chr7_2:4286312-4286331	Msa1045110:three_prime_UTR	30.0%
TGATATCTTTCCTCTAATGA+AGG	-	chr7_2:4286755-4286774	Msa1045110:intron	30.0%
CTAAACACATCCATTAATGA+TGG	-	chr7_2:4286831-4286850	Msa1045110:intron	30.0%
TGTATGTTGCTGCTAAAATT+AGG	-	chr7_2:4287199-4287218	Msa1045110:intron	30.0%
CAAACAATACTCAATCACTT+TGG	+	chr7_2:4287237-4287256	None:intergenic	30.0%
ACAACTTCGCTTTACAATAA+GGG	+	chr7_2:4288379-4288398	None:intergenic	30.0%
TTCAACTATTACTCCAATTC+AGG	+	chr7_2:4288548-4288567	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	4285814	4290189	4285814	ID=Msa1045110;Name=Msa1045110
chr7_2	mRNA	4285814	4290189	4285814	ID=Msa1045110-mRNA-1;Parent=Msa1045110;Name=Msa1045110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=1470\|1\|1\|1\|0\|0\|3\|546\|250
chr7_2	exon	4285814	4286341	4285814	ID=Msa1045110-mRNA-1:exon:1026;Parent=Msa1045110-mRNA-1
chr7_2	exon	4287426	4289489	4287426	ID=Msa1045110-mRNA-1:exon:1025;Parent=Msa1045110-mRNA-1
chr7_2	exon	4290013	4290189	4290013	ID=Msa1045110-mRNA-1:exon:1024;Parent=Msa1045110-mRNA-1
chr7_2	five_prime_UTR	4290013	4290189	4290013	ID=Msa1045110-mRNA-1:five_prime_utr;Parent=Msa1045110-mRNA-1
chr7_2	five_prime_UTR	4288197	4289489	4288197	ID=Msa1045110-mRNA-1:five_prime_utr;Parent=Msa1045110-mRNA-1
chr7_2	CDS	4287444	4288196	4287444	ID=Msa1045110-mRNA-1:cds;Parent=Msa1045110-mRNA-1
chr7_2	three_prime_UTR	4287426	4287443	4287426	ID=Msa1045110-mRNA-1:three_prime_utr;Parent=Msa1045110-mRNA-1
chr7_2	three_prime_UTR	4285814	4286341	4285814	ID=Msa1045110-mRNA-1:three_prime_utr;Parent=Msa1045110-mRNA-1

Gene Sequence

>Msa1045110

ATGATTATCACAAAGCAGTACCGATGCATACATTCAGCTAGCTGTCAATGTTCCAAAGGGCATCTAAGTGAAGATGCGATTTTCTTAGTGTTTCATAATTTAAAATGGAATCCTAAGCTGATTGCTGCTCTATCATGTGTGTGCAAATGGTTTGACGATCTTGCCAAGCGAGTTCTATGGAAAGAGTTTTGTCGAACAAGAGCTCCAAAGATGTTGTGTGATCTGCAATCAACTGGGAGCCACGTCGTTGATGGGAACTGGAGGGCATTAGGGAAGCTTCTTACGTACTGTTCGGGATGCACGAAAGGTGGCTTGTTTAAAAACATTCAGAATCAGATCCCTGGTCACTTTGTGTATCAGACTCGATTTTCTAGAACATCAGGGAAGAGCTTTCTTTTGCCACAATGCAGAACTGATGTTTTGTATGTATCTGATCCTTGTGAGCATCTAGATCAAGGTGAAGAAGGAGATATTGGATTCTTCCGCGGAGTTTTTAAGTCGTTTGCAACGTCAAAGGTCAGAAAGATGCTTATTAGTAAAGGTGCTAAGCTTCATCAAACAGAAGTTTGCCCTTATTGTAAAGCGAAGTTGTGGAGCATGCAGCAAGCTAAAATGATTCCTCAAAGTGCTAGCTGCAGGTTGGGTTCTTATGAAGATGATATCGAGTATTTTGTGTGCCTCAATGGTCACTTGATTGGGATATGTACCCTATTGCCGTTGTCTGATTCTGAAGAGGCGCCTGAATTGGAGTAA

Protein sequence

>Msa1045110

MIITKQYRCIHSASCQCSKGHLSEDAIFLVFHNLKWNPKLIAALSCVCKWFDDLAKRVLWKEFCRTRAPKMLCDLQSTGSHVVDGNWRALGKLLTYCSGCTKGGLFKNIQNQIPGHFVYQTRFSRTSGKSFLLPQCRTDVLYVSDPCEHLDQGEEGDIGFFRGVFKSFATSKVRKMLISKGAKLHQTEVCPYCKAKLWSMQQAKMIPQSASCRLGSYEDDIEYFVCLNGHLIGICTLLPLSDSEEAPELE*