Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099600 | XP_003621387.1 | 100.000 | 238 | 0 | 0 | 3 | 240 | 13 | 250 | 2.77e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099600 | sp|Q9FLZ8|EDL2_ARATH | 75.732 | 239 | 55 | 2 | 3 | 240 | 13 | 249 | 1.33e-138 | 392 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099600 | B7FI24 | 100.000 | 238 | 0 | 0 | 3 | 240 | 13 | 250 | 1.32e-177 | 497 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1008010 | Msa1099600 | 0.873484 | 1.419131e-67 | -8.615850e-47 |
| Msa1008080 | Msa1099600 | 0.880644 | 4.632747e-70 | -8.615850e-47 |
| Msa1045110 | Msa1099600 | 0.842064 | 3.248029e-58 | -8.615850e-47 |
| Msa1099600 | Msa1137280 | 0.883547 | 4.091869e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099600 | MtrunA17_Chr6g0454031 | 81.092 | 238 | 43 | 1 | 3 | 240 | 13 | 248 | 1.78e-149 | 416 |
| Msa1099600 | MtrunA17_Chr7g0218381 | 79.832 | 238 | 0 | 1 | 3 | 240 | 13 | 202 | 6.47e-133 | 372 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1099600 | AT5G39360.1 | 75.732 | 239 | 55 | 2 | 3 | 240 | 13 | 249 | 1.35e-139 | 392 |
| Msa1099600 | AT5G15440.1 | 76.923 | 234 | 53 | 1 | 3 | 236 | 13 | 245 | 1.61e-137 | 388 |
| Msa1099600 | AT3G63060.1 | 42.534 | 221 | 125 | 2 | 13 | 232 | 36 | 255 | 3.21e-63 | 199 |
Find 50 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTGTTTCATAATTTAAAA+TGG | 0.209786 | 7_3:-28327219 | Msa1099600:CDS |
| CACAACTTCGCTTTACAATA+AGG | 0.238798 | 7_3:+28326734 | None:intergenic |
| CAAGGTGAAGAAGGAGATAT+TGG | 0.288349 | 7_3:-28326851 | Msa1099600:CDS |
| TTCAACTATTACTCCAATTC+AGG | 0.290810 | 7_3:+28326566 | None:intergenic |
| GATGGGAACTGGAGGGCATT+AGG | 0.301055 | 7_3:-28327055 | Msa1099600:CDS |
| TGCAGATCACACAACATCTT+TGG | 0.305769 | 7_3:+28327100 | None:intergenic |
| CAGAATCAGACAACGGCAAT+AGG | 0.334261 | 7_3:+28326597 | None:intergenic |
| TTCTGAAGAGGCGCCTGAAT+TGG | 0.352655 | 7_3:-28326579 | Msa1099600:CDS |
| CTCTATCATGTGTGTGCAAA+TGG | 0.361648 | 7_3:-28327177 | Msa1099600:CDS |
| ACAACTTCGCTTTACAATAA+GGG | 0.398128 | 7_3:+28326735 | None:intergenic |
| TGCCTCAATGGTCACTTGAT+TGG | 0.401501 | 7_3:-28326629 | Msa1099600:CDS |
| CAAAGTGCTAGCTGCAGGTT+GGG | 0.401792 | 7_3:-28326683 | Msa1099600:CDS |
| GCCACGTCGTTGATGGGAAC+TGG | 0.411747 | 7_3:-28327066 | Msa1099600:CDS |
| TTGTGTGATCTGCAATCAAC+TGG | 0.417058 | 7_3:-28327091 | Msa1099600:CDS |
| AAGCTTCTTACGTACTGTTC+GGG | 0.422997 | 7_3:-28327031 | Msa1099600:CDS |
| ACTGGGAGCCACGTCGTTGA+TGG | 0.424116 | 7_3:-28327073 | Msa1099600:CDS |
| ATGGGAACTGGAGGGCATTA+GGG | 0.429718 | 7_3:-28327054 | Msa1099600:CDS |
| ATCTTCACTTAGATGCCCTT+TGG | 0.429745 | 7_3:+28327252 | None:intergenic |
| GAAGCTTCTTACGTACTGTT+CGG | 0.432478 | 7_3:-28327032 | Msa1099600:CDS |
| AACCTGCAGCTAGCACTTTG+AGG | 0.444997 | 7_3:+28326686 | None:intergenic |
| GCCTCAATGGTCACTTGATT+GGG | 0.456870 | 7_3:-28326628 | Msa1099600:CDS |
| CATCTAGATCAAGGTGAAGA+AGG | 0.463015 | 7_3:-28326860 | Msa1099600:CDS |
| CTCTTTCCATAGAACTCGCT+TGG | 0.463797 | 7_3:+28327141 | None:intergenic |
| ATCTTGCCAAGCGAGTTCTA+TGG | 0.476286 | 7_3:-28327147 | Msa1099600:CDS |
| TCAAAGTGCTAGCTGCAGGT+TGG | 0.489268 | 7_3:-28326684 | Msa1099600:CDS |
| AGAATCAGACAACGGCAATA+GGG | 0.497429 | 7_3:+28326598 | None:intergenic |
| CTGGGAGCCACGTCGTTGAT+GGG | 0.504476 | 7_3:-28327072 | Msa1099600:CDS |
| GATAGAGCAGCAATCAGCTT+AGG | 0.512808 | 7_3:+28327193 | None:intergenic |
| AGAAAGATGCTTATTAGTAA+AGG | 0.529828 | 7_3:-28326785 | Msa1099600:CDS |
| TTCCTCAAAGTGCTAGCTGC+AGG | 0.540338 | 7_3:-28326688 | Msa1099600:CDS |
| GCCGTTGTCTGATTCTGAAG+AGG | 0.548453 | 7_3:-28326591 | Msa1099600:CDS |
| AACATTCAGAATCAGATCCC+TGG | 0.551777 | 7_3:-28326983 | Msa1099600:CDS |
| CCTTGTGAGCATCTAGATCA+AGG | 0.554478 | 7_3:-28326869 | Msa1099600:CDS |
| GTCTGATACACAAAGTGACC+AGG | 0.560165 | 7_3:+28326965 | None:intergenic |
| CTAGCTGTCAATGTTCCAAA+GGG | 0.560254 | 7_3:-28327267 | Msa1099600:CDS |
| CCTTGATCTAGATGCTCACA+AGG | 0.564697 | 7_3:+28326869 | None:intergenic |
| GCTAGCTGTCAATGTTCCAA+AGG | 0.578026 | 7_3:-28327268 | Msa1099600:CDS |
| TAAGTCGTTTGCAACGTCAA+AGG | 0.578884 | 7_3:-28326810 | Msa1099600:CDS |
| CTTATTGTAAAGCGAAGTTG+TGG | 0.591906 | 7_3:-28326733 | Msa1099600:CDS |
| ACGTCGTTGATGGGAACTGG+AGG | 0.594238 | 7_3:-28327063 | Msa1099600:CDS |
| AAAACATCAGTTCTGCATTG+TGG | 0.613771 | 7_3:+28326905 | None:intergenic |
| TGTTCGGGATGCACGAAAGG+TGG | 0.621782 | 7_3:-28327016 | Msa1099600:CDS |
| GAGGATGATGATGAAATGAA+AGG | 0.625637 | 7_3:-28327649 | None:intergenic |
| GGAGATATTGGATTCTTCCG+CGG | 0.632203 | 7_3:-28326839 | Msa1099600:CDS |
| TCCAGTTCCCATCAACGACG+TGG | 0.656887 | 7_3:+28327065 | None:intergenic |
| CGTCGTTGATGGGAACTGGA+GGG | 0.667520 | 7_3:-28327062 | Msa1099600:CDS |
| TCCCAATCAAGTGACCATTG+AGG | 0.669913 | 7_3:+28326627 | None:intergenic |
| GCCTCTTCAGAATCAGACAA+CGG | 0.682457 | 7_3:+28326590 | None:intergenic |
| TCTGATACACAAAGTGACCA+GGG | 0.703260 | 7_3:+28326966 | None:intergenic |
| TGTGTGATCTGCAATCAACT+GGG | 0.707515 | 7_3:-28327090 | Msa1099600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATTTAGAGAAAAATTGAT+TGG | + | chr7_3:28326711-28326730 | None:intergenic | 15.0% |
| !!! | AATCAATTTTTCTCTAAATT+TGG | - | chr7_3:28326710-28326729 | Msa1099600:CDS | 15.0% |
| !! | TAGTGTTTCATAATTTAAAA+TGG | - | chr7_3:28326989-28327008 | Msa1099600:CDS | 15.0% |
| !! | AAATTTAGAGAAAAATTGAT+TGG | + | chr7_3:28326711-28326730 | None:intergenic | 15.0% |
| !!! | AATCAATTTTTCTCTAAATT+TGG | - | chr7_3:28326710-28326729 | Msa1099600:CDS | 15.0% |
| !! | TAGTGTTTCATAATTTAAAA+TGG | - | chr7_3:28326989-28327008 | Msa1099600:CDS | 15.0% |
| ! | AGAGAGAAAAAAATGGAAAT+GGG | - | chr7_3:28326637-28326656 | Msa1099600:CDS | 25.0% |
| ! | AGAAAGATGCTTATTAGTAA+AGG | - | chr7_3:28327423-28327442 | Msa1099600:intron | 25.0% |
| ! | AGAGAGAAAAAAATGGAAAT+GGG | - | chr7_3:28326637-28326656 | Msa1099600:CDS | 25.0% |
| ! | AGAAAGATGCTTATTAGTAA+AGG | - | chr7_3:28327423-28327442 | Msa1099600:intron | 25.0% |
| TGGTAAGAGAGAGAAAAAAA+TGG | - | chr7_3:28326630-28326649 | Msa1099600:CDS | 30.0% | |
| GAGAGAGAAAAAAATGGAAA+TGG | - | chr7_3:28326636-28326655 | Msa1099600:CDS | 30.0% | |
| GAAAAAAATGGAAATGGGAT+TGG | - | chr7_3:28326642-28326661 | Msa1099600:CDS | 30.0% | |
| ! | ATATGGTTGGCTATATTTAG+AGG | - | chr7_3:28326668-28326687 | Msa1099600:CDS | 30.0% |
| AAAACAGAAACCGTTATCAT+AGG | - | chr7_3:28326735-28326754 | Msa1099600:CDS | 30.0% | |
| AGAACCATTTCCTATGATAA+CGG | + | chr7_3:28326748-28326767 | None:intergenic | 30.0% | |
| ACAACTTCGCTTTACAATAA+GGG | + | chr7_3:28327476-28327495 | None:intergenic | 30.0% | |
| TGGTAAGAGAGAGAAAAAAA+TGG | - | chr7_3:28326630-28326649 | Msa1099600:CDS | 30.0% | |
| GAGAGAGAAAAAAATGGAAA+TGG | - | chr7_3:28326636-28326655 | Msa1099600:CDS | 30.0% | |
| GAAAAAAATGGAAATGGGAT+TGG | - | chr7_3:28326642-28326661 | Msa1099600:CDS | 30.0% | |
| ! | ATATGGTTGGCTATATTTAG+AGG | - | chr7_3:28326668-28326687 | Msa1099600:CDS | 30.0% |
| AAAACAGAAACCGTTATCAT+AGG | - | chr7_3:28326735-28326754 | Msa1099600:CDS | 30.0% | |
| AGAACCATTTCCTATGATAA+CGG | + | chr7_3:28326748-28326767 | None:intergenic | 30.0% | |
| ACAACTTCGCTTTACAATAA+GGG | + | chr7_3:28327476-28327495 | None:intergenic | 30.0% | |
| GAAACCGTTATCATAGGAAA+TGG | - | chr7_3:28326741-28326760 | Msa1099600:CDS | 35.0% | |
| !!! | ACTCGATTTTCTAGAACATC+AGG | - | chr7_3:28327264-28327283 | Msa1099600:CDS | 35.0% |
| !!! | CTCGATTTTCTAGAACATCA+GGG | - | chr7_3:28327265-28327284 | Msa1099600:CDS | 35.0% |
| AAAACATCAGTTCTGCATTG+TGG | + | chr7_3:28327306-28327325 | None:intergenic | 35.0% | |
| CACAACTTCGCTTTACAATA+AGG | + | chr7_3:28327477-28327496 | None:intergenic | 35.0% | |
| CTTATTGTAAAGCGAAGTTG+TGG | - | chr7_3:28327475-28327494 | Msa1099600:intron | 35.0% | |
| GAAACCGTTATCATAGGAAA+TGG | - | chr7_3:28326741-28326760 | Msa1099600:CDS | 35.0% | |
| !!! | ACTCGATTTTCTAGAACATC+AGG | - | chr7_3:28327264-28327283 | Msa1099600:CDS | 35.0% |
| !!! | CTCGATTTTCTAGAACATCA+GGG | - | chr7_3:28327265-28327284 | Msa1099600:CDS | 35.0% |
| AAAACATCAGTTCTGCATTG+TGG | + | chr7_3:28327306-28327325 | None:intergenic | 35.0% | |
| CACAACTTCGCTTTACAATA+AGG | + | chr7_3:28327477-28327496 | None:intergenic | 35.0% | |
| CTTATTGTAAAGCGAAGTTG+TGG | - | chr7_3:28327475-28327494 | Msa1099600:intron | 35.0% | |
| ATCCATGCTGTTGTGATGAT+AGG | - | chr7_3:28326602-28326621 | Msa1099600:CDS | 40.0% | |
| TACCTATCATCACAACAGCA+TGG | + | chr7_3:28326607-28326626 | None:intergenic | 40.0% | |
| ATGCTGTTGTGATGATAGGT+AGG | - | chr7_3:28326606-28326625 | Msa1099600:CDS | 40.0% | |
| TGTTGTGATGATAGGTAGGT+TGG | - | chr7_3:28326610-28326629 | Msa1099600:CDS | 40.0% | |
| AGCTAGCTGAATGTATGCAT+CGG | + | chr7_3:28326927-28326946 | None:intergenic | 40.0% | |
| CTAGCTGTCAATGTTCCAAA+GGG | - | chr7_3:28326941-28326960 | Msa1099600:CDS | 40.0% | |
| ATCTTCACTTAGATGCCCTT+TGG | + | chr7_3:28326959-28326978 | None:intergenic | 40.0% | |
| CTCTATCATGTGTGTGCAAA+TGG | - | chr7_3:28327031-28327050 | Msa1099600:CDS | 40.0% | |
| TGCAGATCACACAACATCTT+TGG | + | chr7_3:28327111-28327130 | None:intergenic | 40.0% | |
| TTGTGTGATCTGCAATCAAC+TGG | - | chr7_3:28327117-28327136 | Msa1099600:CDS | 40.0% | |
| TGTGTGATCTGCAATCAACT+GGG | - | chr7_3:28327118-28327137 | Msa1099600:CDS | 40.0% | |
| GAAGCTTCTTACGTACTGTT+CGG | - | chr7_3:28327176-28327195 | Msa1099600:CDS | 40.0% | |
| AAGCTTCTTACGTACTGTTC+GGG | - | chr7_3:28327177-28327196 | Msa1099600:CDS | 40.0% | |
| AACATTCAGAATCAGATCCC+TGG | - | chr7_3:28327225-28327244 | Msa1099600:CDS | 40.0% | |
| TCTGATACACAAAGTGACCA+GGG | + | chr7_3:28327245-28327264 | None:intergenic | 40.0% | |
| CATCTAGATCAAGGTGAAGA+AGG | - | chr7_3:28327348-28327367 | Msa1099600:intron | 40.0% | |
| CAAGGTGAAGAAGGAGATAT+TGG | - | chr7_3:28327357-28327376 | Msa1099600:intron | 40.0% | |
| CAAACGACTTAAAAACTCCG+CGG | + | chr7_3:28327389-28327408 | None:intergenic | 40.0% | |
| TAAGTCGTTTGCAACGTCAA+AGG | - | chr7_3:28327398-28327417 | Msa1099600:intron | 40.0% | |
| ! | GAGTATTTTGTGTGCCTCAA+TGG | - | chr7_3:28327567-28327586 | Msa1099600:intron | 40.0% |
| AGAATCAGACAACGGCAATA+GGG | + | chr7_3:28327613-28327632 | None:intergenic | 40.0% | |
| ATCCATGCTGTTGTGATGAT+AGG | - | chr7_3:28326602-28326621 | Msa1099600:CDS | 40.0% | |
| TACCTATCATCACAACAGCA+TGG | + | chr7_3:28326607-28326626 | None:intergenic | 40.0% | |
| ATGCTGTTGTGATGATAGGT+AGG | - | chr7_3:28326606-28326625 | Msa1099600:CDS | 40.0% | |
| TGTTGTGATGATAGGTAGGT+TGG | - | chr7_3:28326610-28326629 | Msa1099600:CDS | 40.0% | |
| AGCTAGCTGAATGTATGCAT+CGG | + | chr7_3:28326927-28326946 | None:intergenic | 40.0% | |
| CTAGCTGTCAATGTTCCAAA+GGG | - | chr7_3:28326941-28326960 | Msa1099600:CDS | 40.0% | |
| ATCTTCACTTAGATGCCCTT+TGG | + | chr7_3:28326959-28326978 | None:intergenic | 40.0% | |
| CTCTATCATGTGTGTGCAAA+TGG | - | chr7_3:28327031-28327050 | Msa1099600:CDS | 40.0% | |
| TGCAGATCACACAACATCTT+TGG | + | chr7_3:28327111-28327130 | None:intergenic | 40.0% | |
| TTGTGTGATCTGCAATCAAC+TGG | - | chr7_3:28327117-28327136 | Msa1099600:CDS | 40.0% | |
| TGTGTGATCTGCAATCAACT+GGG | - | chr7_3:28327118-28327137 | Msa1099600:CDS | 40.0% | |
| GAAGCTTCTTACGTACTGTT+CGG | - | chr7_3:28327176-28327195 | Msa1099600:CDS | 40.0% | |
| AAGCTTCTTACGTACTGTTC+GGG | - | chr7_3:28327177-28327196 | Msa1099600:CDS | 40.0% | |
| AACATTCAGAATCAGATCCC+TGG | - | chr7_3:28327225-28327244 | Msa1099600:CDS | 40.0% | |
| TCTGATACACAAAGTGACCA+GGG | + | chr7_3:28327245-28327264 | None:intergenic | 40.0% | |
| CATCTAGATCAAGGTGAAGA+AGG | - | chr7_3:28327348-28327367 | Msa1099600:intron | 40.0% | |
| CAAGGTGAAGAAGGAGATAT+TGG | - | chr7_3:28327357-28327376 | Msa1099600:intron | 40.0% | |
| CAAACGACTTAAAAACTCCG+CGG | + | chr7_3:28327389-28327408 | None:intergenic | 40.0% | |
| TAAGTCGTTTGCAACGTCAA+AGG | - | chr7_3:28327398-28327417 | Msa1099600:intron | 40.0% | |
| ! | GAGTATTTTGTGTGCCTCAA+TGG | - | chr7_3:28327567-28327586 | Msa1099600:intron | 40.0% |
| AGAATCAGACAACGGCAATA+GGG | + | chr7_3:28327613-28327632 | None:intergenic | 40.0% | |
| ! | GGAAATGGGATTGGCAGATA+TGG | - | chr7_3:28326651-28326670 | Msa1099600:CDS | 45.0% |
| ! | ATGGGATTGGCAGATATGGT+TGG | - | chr7_3:28326655-28326674 | Msa1099600:CDS | 45.0% |
| GCTAGCTGTCAATGTTCCAA+AGG | - | chr7_3:28326940-28326959 | Msa1099600:CDS | 45.0% | |
| GATAGAGCAGCAATCAGCTT+AGG | + | chr7_3:28327018-28327037 | None:intergenic | 45.0% | |
| ATCTTGCCAAGCGAGTTCTA+TGG | - | chr7_3:28327061-28327080 | Msa1099600:CDS | 45.0% | |
| CTCTTTCCATAGAACTCGCT+TGG | + | chr7_3:28327070-28327089 | None:intergenic | 45.0% | |
| GTCTGATACACAAAGTGACC+AGG | + | chr7_3:28327246-28327265 | None:intergenic | 45.0% | |
| CCTTGATCTAGATGCTCACA+AGG | + | chr7_3:28327342-28327361 | None:intergenic | 45.0% | |
| CCTTGTGAGCATCTAGATCA+AGG | - | chr7_3:28327339-28327358 | Msa1099600:intron | 45.0% | |
| GGAGATATTGGATTCTTCCG+CGG | - | chr7_3:28327369-28327388 | Msa1099600:intron | 45.0% | |
| TGCCTCAATGGTCACTTGAT+TGG | - | chr7_3:28327579-28327598 | Msa1099600:intron | 45.0% | |
| GCCTCAATGGTCACTTGATT+GGG | - | chr7_3:28327580-28327599 | Msa1099600:intron | 45.0% | |
| TCCCAATCAAGTGACCATTG+AGG | + | chr7_3:28327584-28327603 | None:intergenic | 45.0% | |
| CAGAATCAGACAACGGCAAT+AGG | + | chr7_3:28327614-28327633 | None:intergenic | 45.0% | |
| GCCTCTTCAGAATCAGACAA+CGG | + | chr7_3:28327621-28327640 | None:intergenic | 45.0% | |
| ! | GGAAATGGGATTGGCAGATA+TGG | - | chr7_3:28326651-28326670 | Msa1099600:CDS | 45.0% |
| ! | ATGGGATTGGCAGATATGGT+TGG | - | chr7_3:28326655-28326674 | Msa1099600:CDS | 45.0% |
| GCTAGCTGTCAATGTTCCAA+AGG | - | chr7_3:28326940-28326959 | Msa1099600:CDS | 45.0% | |
| GATAGAGCAGCAATCAGCTT+AGG | + | chr7_3:28327018-28327037 | None:intergenic | 45.0% | |
| ATCTTGCCAAGCGAGTTCTA+TGG | - | chr7_3:28327061-28327080 | Msa1099600:CDS | 45.0% | |
| CTCTTTCCATAGAACTCGCT+TGG | + | chr7_3:28327070-28327089 | None:intergenic | 45.0% | |
| GTCTGATACACAAAGTGACC+AGG | + | chr7_3:28327246-28327265 | None:intergenic | 45.0% | |
| CCTTGATCTAGATGCTCACA+AGG | + | chr7_3:28327342-28327361 | None:intergenic | 45.0% | |
| CCTTGTGAGCATCTAGATCA+AGG | - | chr7_3:28327339-28327358 | Msa1099600:intron | 45.0% | |
| GGAGATATTGGATTCTTCCG+CGG | - | chr7_3:28327369-28327388 | Msa1099600:intron | 45.0% | |
| TGCCTCAATGGTCACTTGAT+TGG | - | chr7_3:28327579-28327598 | Msa1099600:intron | 45.0% | |
| GCCTCAATGGTCACTTGATT+GGG | - | chr7_3:28327580-28327599 | Msa1099600:intron | 45.0% | |
| TCCCAATCAAGTGACCATTG+AGG | + | chr7_3:28327584-28327603 | None:intergenic | 45.0% | |
| CAGAATCAGACAACGGCAAT+AGG | + | chr7_3:28327614-28327633 | None:intergenic | 45.0% | |
| GCCTCTTCAGAATCAGACAA+CGG | + | chr7_3:28327621-28327640 | None:intergenic | 45.0% | |
| !! | ATGGGAACTGGAGGGCATTA+GGG | - | chr7_3:28327154-28327173 | Msa1099600:CDS | 50.0% |
| TACTGTTCGGGATGCACGAA+AGG | - | chr7_3:28327189-28327208 | Msa1099600:CDS | 50.0% | |
| ! | TTCCTCAAAGTGCTAGCTGC+AGG | - | chr7_3:28327520-28327539 | Msa1099600:intron | 50.0% |
| AACCTGCAGCTAGCACTTTG+AGG | + | chr7_3:28327525-28327544 | None:intergenic | 50.0% | |
| ! | TCAAAGTGCTAGCTGCAGGT+TGG | - | chr7_3:28327524-28327543 | Msa1099600:intron | 50.0% |
| ! | CAAAGTGCTAGCTGCAGGTT+GGG | - | chr7_3:28327525-28327544 | Msa1099600:intron | 50.0% |
| ! | GCCGTTGTCTGATTCTGAAG+AGG | - | chr7_3:28327617-28327636 | Msa1099600:intron | 50.0% |
| !! | TTCTGAAGAGGCGCCTGAAT+TGG | - | chr7_3:28327629-28327648 | Msa1099600:intron | 50.0% |
| !! | ATGGGAACTGGAGGGCATTA+GGG | - | chr7_3:28327154-28327173 | Msa1099600:CDS | 50.0% |
| TACTGTTCGGGATGCACGAA+AGG | - | chr7_3:28327189-28327208 | Msa1099600:CDS | 50.0% | |
| ! | TTCCTCAAAGTGCTAGCTGC+AGG | - | chr7_3:28327520-28327539 | Msa1099600:intron | 50.0% |
| AACCTGCAGCTAGCACTTTG+AGG | + | chr7_3:28327525-28327544 | None:intergenic | 50.0% | |
| ! | TCAAAGTGCTAGCTGCAGGT+TGG | - | chr7_3:28327524-28327543 | Msa1099600:intron | 50.0% |
| ! | CAAAGTGCTAGCTGCAGGTT+GGG | - | chr7_3:28327525-28327544 | Msa1099600:intron | 50.0% |
| ! | GCCGTTGTCTGATTCTGAAG+AGG | - | chr7_3:28327617-28327636 | Msa1099600:intron | 50.0% |
| !! | TTCTGAAGAGGCGCCTGAAT+TGG | - | chr7_3:28327629-28327648 | Msa1099600:intron | 50.0% |
| TCCAGTTCCCATCAACGACG+TGG | + | chr7_3:28327146-28327165 | None:intergenic | 55.0% | |
| ! | ACGTCGTTGATGGGAACTGG+AGG | - | chr7_3:28327145-28327164 | Msa1099600:CDS | 55.0% |
| ! | CGTCGTTGATGGGAACTGGA+GGG | - | chr7_3:28327146-28327165 | Msa1099600:CDS | 55.0% |
| !! | GATGGGAACTGGAGGGCATT+AGG | - | chr7_3:28327153-28327172 | Msa1099600:CDS | 55.0% |
| TGTTCGGGATGCACGAAAGG+TGG | - | chr7_3:28327192-28327211 | Msa1099600:CDS | 55.0% | |
| TCCAGTTCCCATCAACGACG+TGG | + | chr7_3:28327146-28327165 | None:intergenic | 55.0% | |
| ! | ACGTCGTTGATGGGAACTGG+AGG | - | chr7_3:28327145-28327164 | Msa1099600:CDS | 55.0% |
| ! | CGTCGTTGATGGGAACTGGA+GGG | - | chr7_3:28327146-28327165 | Msa1099600:CDS | 55.0% |
| !! | GATGGGAACTGGAGGGCATT+AGG | - | chr7_3:28327153-28327172 | Msa1099600:CDS | 55.0% |
| TGTTCGGGATGCACGAAAGG+TGG | - | chr7_3:28327192-28327211 | Msa1099600:CDS | 55.0% | |
| ACTGGGAGCCACGTCGTTGA+TGG | - | chr7_3:28327135-28327154 | Msa1099600:CDS | 60.0% | |
| CTGGGAGCCACGTCGTTGAT+GGG | - | chr7_3:28327136-28327155 | Msa1099600:CDS | 60.0% | |
| ! | GCCACGTCGTTGATGGGAAC+TGG | - | chr7_3:28327142-28327161 | Msa1099600:CDS | 60.0% |
| ACTGGGAGCCACGTCGTTGA+TGG | - | chr7_3:28327135-28327154 | Msa1099600:CDS | 60.0% | |
| CTGGGAGCCACGTCGTTGAT+GGG | - | chr7_3:28327136-28327155 | Msa1099600:CDS | 60.0% | |
| ! | GCCACGTCGTTGATGGGAAC+TGG | - | chr7_3:28327142-28327161 | Msa1099600:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 28326574 | 28327656 | 28326574 | ID=Msa1099600;Name=Msa1099600 |
| chr7_3 | mRNA | 28326574 | 28327656 | 28326574 | ID=Msa1099600-mRNA-1;Parent=Msa1099600;Name=Msa1099600-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0|0.5|1|1|2|0|240 |
| chr7_3 | exon | 28327650 | 28327656 | 28327650 | ID=Msa1099600-mRNA-1:exon:5986;Parent=Msa1099600-mRNA-1 |
| chr7_3 | exon | 28326574 | 28327289 | 28326574 | ID=Msa1099600-mRNA-1:exon:5985;Parent=Msa1099600-mRNA-1 |
| chr7_3 | CDS | 28327650 | 28327656 | 28327650 | ID=Msa1099600-mRNA-1:cds;Parent=Msa1099600-mRNA-1 |
| chr7_3 | CDS | 28326574 | 28327289 | 28326574 | ID=Msa1099600-mRNA-1:cds;Parent=Msa1099600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
