Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009250 | XP_013444285.1 | 92.889 | 225 | 13 | 1 | 1 | 222 | 41 | 265 | 1.76e-152 | 435 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009250 | sp|Q9FZ62|PPSP2_ARATH | 59.916 | 237 | 84 | 4 | 1 | 226 | 43 | 279 | 1.41e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009250 | A0A072TLL0 | 92.889 | 225 | 13 | 1 | 1 | 222 | 41 | 265 | 8.41e-153 | 435 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0055690 | Msa1009250 | 0.806838 | 6.770636e-50 | -8.615850e-47 |
| Msa0784520 | Msa1009250 | 0.807487 | 4.934280e-50 | -8.615850e-47 |
| Msa1009250 | Msa1050450 | 0.853064 | 3.059159e-61 | -8.615850e-47 |
| Msa0584130 | Msa1009250 | 0.805822 | 1.108973e-49 | -8.615850e-47 |
| Msa0865390 | Msa1009250 | 0.808820 | 2.566698e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009250 | MtrunA17_Chr8g0341721 | 92.889 | 225 | 13 | 1 | 1 | 222 | 41 | 265 | 1.62e-156 | 435 |
| Msa1009250 | MtrunA17_Chr8g0341701 | 82.192 | 219 | 36 | 1 | 1 | 216 | 41 | 259 | 2.79e-133 | 376 |
| Msa1009250 | MtrunA17_Chr8g0341741 | 81.416 | 226 | 34 | 3 | 1 | 222 | 41 | 262 | 3.93e-133 | 376 |
| Msa1009250 | MtrunA17_Chr8g0341731 | 79.545 | 220 | 41 | 2 | 1 | 216 | 41 | 260 | 7.12e-130 | 367 |
| Msa1009250 | MtrunA17_Chr2g0330511 | 73.303 | 221 | 55 | 2 | 1 | 218 | 40 | 259 | 7.55e-118 | 337 |
| Msa1009250 | MtrunA17_Chr2g0309111 | 71.622 | 222 | 60 | 1 | 1 | 219 | 84 | 305 | 4.80e-115 | 332 |
| Msa1009250 | MtrunA17_Chr2g0330491 | 56.502 | 223 | 90 | 2 | 1 | 216 | 40 | 262 | 2.99e-88 | 262 |
| Msa1009250 | MtrunA17_Chr8g0389271 | 57.789 | 199 | 80 | 3 | 1 | 195 | 38 | 236 | 6.29e-80 | 239 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1009250 | AT1G17710.1 | 59.916 | 237 | 84 | 4 | 1 | 226 | 43 | 279 | 1.43e-100 | 294 |
| Msa1009250 | AT1G17710.2 | 58.723 | 235 | 86 | 4 | 3 | 226 | 13 | 247 | 1.26e-96 | 283 |
| Msa1009250 | AT1G73010.1 | 64.103 | 195 | 65 | 2 | 1 | 190 | 50 | 244 | 7.43e-92 | 272 |
| Msa1009250 | AT4G29530.1 | 52.451 | 204 | 93 | 1 | 1 | 200 | 40 | 243 | 5.34e-78 | 235 |
| Msa1009250 | AT4G29530.2 | 52.284 | 197 | 90 | 1 | 8 | 200 | 36 | 232 | 1.81e-74 | 226 |
Find 57 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATATTATTCTGTGATTAAT+TGG | 0.161270 | 7_1:+10465403 | None:intergenic |
| TATGCCTTTCAATTCTCTTA+TGG | 0.235071 | 7_1:-10465619 | Msa1009250:intron |
| ACAATTGTGATAGTGATAAT+TGG | 0.236730 | 7_1:-10465685 | Msa1009250:five_prime_UTR |
| ATTAAATCAGCTTATGCATT+AGG | 0.247679 | 7_1:-10465376 | Msa1009250:CDS |
| TACCTACCTTGCACATGTTT+GGG | 0.267084 | 7_1:+10465167 | None:intergenic |
| GTTAGAGAATATCATTAGTT+AGG | 0.281841 | 7_1:+10465746 | None:intergenic |
| TAGTGATAATTGGGTGAATT+AGG | 0.294368 | 7_1:-10465675 | Msa1009250:five_prime_UTR |
| CTTGTCAAAGCCGAAATTCA+TGG | 0.317767 | 7_1:-10464891 | Msa1009250:CDS |
| ATACCTACCTTGCACATGTT+TGG | 0.330175 | 7_1:+10465166 | None:intergenic |
| ATCACTCCAACCATGAATTT+CGG | 0.345321 | 7_1:+10464881 | None:intergenic |
| ATCTACCTTGGTGATGGTGG+TGG | 0.364543 | 7_1:-10465008 | Msa1009250:CDS |
| TTAAATCAGCTTATGCATTA+GGG | 0.371086 | 7_1:-10465375 | Msa1009250:CDS |
| TGCAATCAGATGCAATGAAT+TGG | 0.386035 | 7_1:+10464796 | None:intergenic |
| ATGATGGAGCTTCATTCAAA+TGG | 0.391230 | 7_1:-10465466 | Msa1009250:CDS |
| CCTTCTTGATTAACATAACC+AGG | 0.424126 | 7_1:+10465253 | None:intergenic |
| AAGGCAATTGACTGGTGAAC+GGG | 0.432216 | 7_1:+10464749 | None:intergenic |
| ATGCATTAGGGTGTGATTTG+AGG | 0.437272 | 7_1:-10465363 | Msa1009250:CDS |
| CAATTGTGATAGTGATAATT+GGG | 0.438364 | 7_1:-10465684 | Msa1009250:five_prime_UTR |
| TTGGAGTGATGGAGAAGAAT+TGG | 0.439096 | 7_1:-10464868 | Msa1009250:CDS |
| TTAGAGAATATCATTAGTTA+GGG | 0.449842 | 7_1:+10465747 | None:intergenic |
| CACACTGGAAAATTCTTCCT+TGG | 0.458582 | 7_1:+10464939 | None:intergenic |
| TCTACCTTGGTGATGGTGGT+GGG | 0.466824 | 7_1:-10465007 | Msa1009250:CDS |
| TCTGAGATTAACACTAATCC+TGG | 0.477118 | 7_1:-10465271 | Msa1009250:CDS |
| AACAAGAGGTTTATCTACCT+TGG | 0.481752 | 7_1:-10465020 | Msa1009250:CDS |
| TCATTAGTTAGGGTCCTAGT+TGG | 0.486828 | 7_1:+10465757 | None:intergenic |
| AACCTCTTCAATCTCTTCGA+TGG | 0.499828 | 7_1:+10465438 | None:intergenic |
| CCTGGTTATGTTAATCAAGA+AGG | 0.499879 | 7_1:-10465253 | Msa1009250:CDS |
| CTACCTTGGTGATGGTGGTG+GGG | 0.504338 | 7_1:-10465006 | Msa1009250:CDS |
| CTTTCTCTAAGTCTCAAGCT+AGG | 0.506175 | 7_1:+10464975 | None:intergenic |
| TGATGGAGCTTCATTCAAAT+GGG | 0.508401 | 7_1:-10465465 | Msa1009250:CDS |
| GAAATTCATGGTTGGAGTGA+TGG | 0.509953 | 7_1:-10464879 | Msa1009250:CDS |
| GCTTTGTTGAAGTCATGATA+AGG | 0.514128 | 7_1:+10465214 | None:intergenic |
| GACTTCAACAAAGCTTCTCA+TGG | 0.521531 | 7_1:-10465205 | Msa1009250:CDS |
| TTTACAGGACAGAATGATGA+TGG | 0.525460 | 7_1:-10465482 | Msa1009250:intron |
| TTTATCTACCTTGGTGATGG+TGG | 0.525698 | 7_1:-10465011 | Msa1009250:CDS |
| AAGAGAATTGAAAGGCATAG+TGG | 0.528235 | 7_1:+10465623 | None:intergenic |
| ACCTACCTTGCACATGTTTG+GGG | 0.544836 | 7_1:+10465168 | None:intergenic |
| AGGTTTATCTACCTTGGTGA+TGG | 0.549393 | 7_1:-10465014 | Msa1009250:CDS |
| AAGAATTTAAGGCAATTGAC+TGG | 0.551740 | 7_1:+10464741 | None:intergenic |
| TAAGGCAATTGACTGGTGAA+CGG | 0.552781 | 7_1:+10464748 | None:intergenic |
| GTTGATTAACAAAATTGTGA+TGG | 0.556897 | 7_1:-10464829 | Msa1009250:CDS |
| AAGGAGTTGATTGAACAAAT+CGG | 0.557882 | 7_1:+10465647 | None:intergenic |
| AGAGAATTGAAAGGCATAGT+GGG | 0.565487 | 7_1:+10465624 | None:intergenic |
| AGATTGAAGAGGTTCTTCAA+AGG | 0.570752 | 7_1:-10465429 | Msa1009250:CDS |
| AATTGAAAGGCATAGTGGGA+AGG | 0.577724 | 7_1:+10465628 | None:intergenic |
| ACAAACACTACTCCAATCAA+AGG | 0.591847 | 7_1:+10464685 | None:intergenic |
| AAAGTGACTTTGTGATGCCA+AGG | 0.591849 | 7_1:-10464956 | Msa1009250:CDS |
| TTTCTCTAAGTCTCAAGCTA+GGG | 0.592139 | 7_1:+10464976 | None:intergenic |
| TCAAAGCCGAAATTCATGGT+TGG | 0.594596 | 7_1:-10464887 | Msa1009250:CDS |
| GATTAACAAAATTGTGATGG+AGG | 0.620153 | 7_1:-10464826 | Msa1009250:CDS |
| AACCATCGAAGAGATTGAAG+AGG | 0.624606 | 7_1:-10465440 | Msa1009250:CDS |
| CCTACCTTGCACATGTTTGG+GGG | 0.627286 | 7_1:+10465169 | None:intergenic |
| CATACCATAAGAGAATTGAA+AGG | 0.628950 | 7_1:+10465615 | None:intergenic |
| TTGCATATCAAATCCCACAC+TGG | 0.630294 | 7_1:+10464924 | None:intergenic |
| GATTGTTAGTGATGCTAATG+CGG | 0.651747 | 7_1:-10465341 | Msa1009250:CDS |
| GTGACTTATAGTAACCAACT+AGG | 0.664279 | 7_1:-10465771 | None:intergenic |
| AGTCCCCACCACCATCACCA+AGG | 0.700264 | 7_1:+10465003 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAGAGAATATCATTAGTTA+GGG | + | chr7_1:10464620-10464639 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTTTTGATTT+TGG | - | chr7_1:10464857-10464876 | Msa1009250:CDS | 20.0% |
| !! | GATATTATTCTGTGATTAAT+TGG | + | chr7_1:10464964-10464983 | None:intergenic | 20.0% |
| !! | ACACAAAAACTAAGAATTTA+AGG | + | chr7_1:10465637-10465656 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGTCCTTTGAT+TGG | - | chr7_1:10465667-10465686 | Msa1009250:five_prime_UTR | 20.0% |
| !!! | GTATTGAATATCAATTTTTG+AGG | - | chr7_1:10465700-10465719 | Msa1009250:five_prime_UTR | 20.0% |
| !! | TTAGAGAATATCATTAGTTA+GGG | + | chr7_1:10464620-10464639 | None:intergenic | 20.0% |
| !!! | ATTAACTTGTGTTTTGATTT+TGG | - | chr7_1:10464857-10464876 | Msa1009250:CDS | 20.0% |
| !! | GATATTATTCTGTGATTAAT+TGG | + | chr7_1:10464964-10464983 | None:intergenic | 20.0% |
| !! | ACACAAAAACTAAGAATTTA+AGG | + | chr7_1:10465637-10465656 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTGTCCTTTGAT+TGG | - | chr7_1:10465667-10465686 | Msa1009250:five_prime_UTR | 20.0% |
| !!! | GTATTGAATATCAATTTTTG+AGG | - | chr7_1:10465700-10465719 | Msa1009250:five_prime_UTR | 20.0% |
| ! | GTTAGAGAATATCATTAGTT+AGG | + | chr7_1:10464621-10464640 | None:intergenic | 25.0% |
| !! | ACAATTGTGATAGTGATAAT+TGG | - | chr7_1:10464679-10464698 | Msa1009250:three_prime_UTR | 25.0% |
| !! | CAATTGTGATAGTGATAATT+GGG | - | chr7_1:10464680-10464699 | Msa1009250:three_prime_UTR | 25.0% |
| !!! | GTTTTGATTTTGGAATTTAC+AGG | - | chr7_1:10464867-10464886 | Msa1009250:CDS | 25.0% |
| ! | ATTAAATCAGCTTATGCATT+AGG | - | chr7_1:10464988-10465007 | Msa1009250:CDS | 25.0% |
| ! | TTAAATCAGCTTATGCATTA+GGG | - | chr7_1:10464989-10465008 | Msa1009250:CDS | 25.0% |
| !!! | AACACAATTTTGAAGCATTT+GGG | - | chr7_1:10465054-10465073 | Msa1009250:CDS | 25.0% |
| !!! | TCTTGTTCGAAATTGATTTT+TGG | + | chr7_1:10465331-10465350 | None:intergenic | 25.0% |
| ! | AAAAATCAATTTCGAACAAG+AGG | - | chr7_1:10465330-10465349 | Msa1009250:CDS | 25.0% |
| ! | GTTGATTAACAAAATTGTGA+TGG | - | chr7_1:10465535-10465554 | Msa1009250:intron | 25.0% |
| ! | GTTAGAGAATATCATTAGTT+AGG | + | chr7_1:10464621-10464640 | None:intergenic | 25.0% |
| !! | ACAATTGTGATAGTGATAAT+TGG | - | chr7_1:10464679-10464698 | Msa1009250:three_prime_UTR | 25.0% |
| !! | CAATTGTGATAGTGATAATT+GGG | - | chr7_1:10464680-10464699 | Msa1009250:three_prime_UTR | 25.0% |
| !!! | GTTTTGATTTTGGAATTTAC+AGG | - | chr7_1:10464867-10464886 | Msa1009250:CDS | 25.0% |
| ! | ATTAAATCAGCTTATGCATT+AGG | - | chr7_1:10464988-10465007 | Msa1009250:CDS | 25.0% |
| ! | TTAAATCAGCTTATGCATTA+GGG | - | chr7_1:10464989-10465008 | Msa1009250:CDS | 25.0% |
| !!! | AACACAATTTTGAAGCATTT+GGG | - | chr7_1:10465054-10465073 | Msa1009250:CDS | 25.0% |
| !!! | TCTTGTTCGAAATTGATTTT+TGG | + | chr7_1:10465331-10465350 | None:intergenic | 25.0% |
| ! | AAAAATCAATTTCGAACAAG+AGG | - | chr7_1:10465330-10465349 | Msa1009250:CDS | 25.0% |
| ! | GTTGATTAACAAAATTGTGA+TGG | - | chr7_1:10465535-10465554 | Msa1009250:intron | 25.0% |
| TAGTGATAATTGGGTGAATT+AGG | - | chr7_1:10464689-10464708 | Msa1009250:exon | 30.0% | |
| ! | AAGGAGTTGATTGAACAAAT+CGG | + | chr7_1:10464720-10464739 | None:intergenic | 30.0% |
| TATGCCTTTCAATTCTCTTA+TGG | - | chr7_1:10464745-10464764 | Msa1009250:CDS | 30.0% | |
| CATACCATAAGAGAATTGAA+AGG | + | chr7_1:10464752-10464771 | None:intergenic | 30.0% | |
| !!! | CAACACAATTTTGAAGCATT+TGG | - | chr7_1:10465053-10465072 | Msa1009250:CDS | 30.0% |
| GATTAACAAAATTGTGATGG+AGG | - | chr7_1:10465538-10465557 | Msa1009250:intron | 30.0% | |
| ! | AAGAATTTAAGGCAATTGAC+TGG | + | chr7_1:10465626-10465645 | None:intergenic | 30.0% |
| TAGTGATAATTGGGTGAATT+AGG | - | chr7_1:10464689-10464708 | Msa1009250:exon | 30.0% | |
| ! | AAGGAGTTGATTGAACAAAT+CGG | + | chr7_1:10464720-10464739 | None:intergenic | 30.0% |
| TATGCCTTTCAATTCTCTTA+TGG | - | chr7_1:10464745-10464764 | Msa1009250:CDS | 30.0% | |
| CATACCATAAGAGAATTGAA+AGG | + | chr7_1:10464752-10464771 | None:intergenic | 30.0% | |
| !!! | CAACACAATTTTGAAGCATT+TGG | - | chr7_1:10465053-10465072 | Msa1009250:CDS | 30.0% |
| GATTAACAAAATTGTGATGG+AGG | - | chr7_1:10465538-10465557 | Msa1009250:intron | 30.0% | |
| ! | AAGAATTTAAGGCAATTGAC+TGG | + | chr7_1:10465626-10465645 | None:intergenic | 30.0% |
| ! | AGAGAATTGAAAGGCATAGT+GGG | + | chr7_1:10464743-10464762 | None:intergenic | 35.0% |
| ! | AAGAGAATTGAAAGGCATAG+TGG | + | chr7_1:10464744-10464763 | None:intergenic | 35.0% |
| TTTACAGGACAGAATGATGA+TGG | - | chr7_1:10464882-10464901 | Msa1009250:CDS | 35.0% | |
| ! | ATGATGGAGCTTCATTCAAA+TGG | - | chr7_1:10464898-10464917 | Msa1009250:CDS | 35.0% |
| TGATGGAGCTTCATTCAAAT+GGG | - | chr7_1:10464899-10464918 | Msa1009250:CDS | 35.0% | |
| AGATTGAAGAGGTTCTTCAA+AGG | - | chr7_1:10464935-10464954 | Msa1009250:CDS | 35.0% | |
| GATTGTTAGTGATGCTAATG+CGG | - | chr7_1:10465023-10465042 | Msa1009250:CDS | 35.0% | |
| ! | TCTGAGATTAACACTAATCC+TGG | - | chr7_1:10465093-10465112 | Msa1009250:intron | 35.0% |
| CCTTCTTGATTAACATAACC+AGG | + | chr7_1:10465114-10465133 | None:intergenic | 35.0% | |
| CCTGGTTATGTTAATCAAGA+AGG | - | chr7_1:10465111-10465130 | Msa1009250:intron | 35.0% | |
| ! | GCTTTGTTGAAGTCATGATA+AGG | + | chr7_1:10465153-10465172 | None:intergenic | 35.0% |
| AACAAGAGGTTTATCTACCT+TGG | - | chr7_1:10465344-10465363 | Msa1009250:CDS | 35.0% | |
| TTTCTCTAAGTCTCAAGCTA+GGG | + | chr7_1:10465391-10465410 | None:intergenic | 35.0% | |
| ! | AAGGAAGAATTTTCCAGTGT+GGG | - | chr7_1:10465427-10465446 | Msa1009250:CDS | 35.0% |
| ATCACTCCAACCATGAATTT+CGG | + | chr7_1:10465486-10465505 | None:intergenic | 35.0% | |
| TGCAATCAGATGCAATGAAT+TGG | + | chr7_1:10465571-10465590 | None:intergenic | 35.0% | |
| ACAAACACTACTCCAATCAA+AGG | + | chr7_1:10465682-10465701 | None:intergenic | 35.0% | |
| ! | AGAGAATTGAAAGGCATAGT+GGG | + | chr7_1:10464743-10464762 | None:intergenic | 35.0% |
| ! | AAGAGAATTGAAAGGCATAG+TGG | + | chr7_1:10464744-10464763 | None:intergenic | 35.0% |
| TTTACAGGACAGAATGATGA+TGG | - | chr7_1:10464882-10464901 | Msa1009250:CDS | 35.0% | |
| ! | ATGATGGAGCTTCATTCAAA+TGG | - | chr7_1:10464898-10464917 | Msa1009250:CDS | 35.0% |
| TGATGGAGCTTCATTCAAAT+GGG | - | chr7_1:10464899-10464918 | Msa1009250:CDS | 35.0% | |
| AGATTGAAGAGGTTCTTCAA+AGG | - | chr7_1:10464935-10464954 | Msa1009250:CDS | 35.0% | |
| GATTGTTAGTGATGCTAATG+CGG | - | chr7_1:10465023-10465042 | Msa1009250:CDS | 35.0% | |
| ! | TCTGAGATTAACACTAATCC+TGG | - | chr7_1:10465093-10465112 | Msa1009250:intron | 35.0% |
| CCTTCTTGATTAACATAACC+AGG | + | chr7_1:10465114-10465133 | None:intergenic | 35.0% | |
| CCTGGTTATGTTAATCAAGA+AGG | - | chr7_1:10465111-10465130 | Msa1009250:intron | 35.0% | |
| ! | GCTTTGTTGAAGTCATGATA+AGG | + | chr7_1:10465153-10465172 | None:intergenic | 35.0% |
| AACAAGAGGTTTATCTACCT+TGG | - | chr7_1:10465344-10465363 | Msa1009250:CDS | 35.0% | |
| TTTCTCTAAGTCTCAAGCTA+GGG | + | chr7_1:10465391-10465410 | None:intergenic | 35.0% | |
| ! | AAGGAAGAATTTTCCAGTGT+GGG | - | chr7_1:10465427-10465446 | Msa1009250:CDS | 35.0% |
| ATCACTCCAACCATGAATTT+CGG | + | chr7_1:10465486-10465505 | None:intergenic | 35.0% | |
| TGCAATCAGATGCAATGAAT+TGG | + | chr7_1:10465571-10465590 | None:intergenic | 35.0% | |
| ACAAACACTACTCCAATCAA+AGG | + | chr7_1:10465682-10465701 | None:intergenic | 35.0% | |
| ! | AATTGAAAGGCATAGTGGGA+AGG | + | chr7_1:10464739-10464758 | None:intergenic | 40.0% |
| AACCATCGAAGAGATTGAAG+AGG | - | chr7_1:10464924-10464943 | Msa1009250:CDS | 40.0% | |
| AACCTCTTCAATCTCTTCGA+TGG | + | chr7_1:10464929-10464948 | None:intergenic | 40.0% | |
| ATGCATTAGGGTGTGATTTG+AGG | - | chr7_1:10465001-10465020 | Msa1009250:CDS | 40.0% | |
| GACTTCAACAAAGCTTCTCA+TGG | - | chr7_1:10465159-10465178 | Msa1009250:intron | 40.0% | |
| TACCTACCTTGCACATGTTT+GGG | + | chr7_1:10465200-10465219 | None:intergenic | 40.0% | |
| ATACCTACCTTGCACATGTT+TGG | + | chr7_1:10465201-10465220 | None:intergenic | 40.0% | |
| AGGTTTATCTACCTTGGTGA+TGG | - | chr7_1:10465350-10465369 | Msa1009250:CDS | 40.0% | |
| !! | TTTATCTACCTTGGTGATGG+TGG | - | chr7_1:10465353-10465372 | Msa1009250:CDS | 40.0% |
| CTTTCTCTAAGTCTCAAGCT+AGG | + | chr7_1:10465392-10465411 | None:intergenic | 40.0% | |
| AAAGTGACTTTGTGATGCCA+AGG | - | chr7_1:10465408-10465427 | Msa1009250:CDS | 40.0% | |
| CACACTGGAAAATTCTTCCT+TGG | + | chr7_1:10465428-10465447 | None:intergenic | 40.0% | |
| ! | CAAGGAAGAATTTTCCAGTG+TGG | - | chr7_1:10465426-10465445 | Msa1009250:CDS | 40.0% |
| TTGCATATCAAATCCCACAC+TGG | + | chr7_1:10465443-10465462 | None:intergenic | 40.0% | |
| CTTGTCAAAGCCGAAATTCA+TGG | - | chr7_1:10465473-10465492 | Msa1009250:CDS | 40.0% | |
| TCAAAGCCGAAATTCATGGT+TGG | - | chr7_1:10465477-10465496 | Msa1009250:CDS | 40.0% | |
| GAAATTCATGGTTGGAGTGA+TGG | - | chr7_1:10465485-10465504 | Msa1009250:intron | 40.0% | |
| ! | TTGGAGTGATGGAGAAGAAT+TGG | - | chr7_1:10465496-10465515 | Msa1009250:intron | 40.0% |
| TAAGGCAATTGACTGGTGAA+CGG | + | chr7_1:10465619-10465638 | None:intergenic | 40.0% | |
| ! | AATTGAAAGGCATAGTGGGA+AGG | + | chr7_1:10464739-10464758 | None:intergenic | 40.0% |
| AACCATCGAAGAGATTGAAG+AGG | - | chr7_1:10464924-10464943 | Msa1009250:CDS | 40.0% | |
| AACCTCTTCAATCTCTTCGA+TGG | + | chr7_1:10464929-10464948 | None:intergenic | 40.0% | |
| ATGCATTAGGGTGTGATTTG+AGG | - | chr7_1:10465001-10465020 | Msa1009250:CDS | 40.0% | |
| GACTTCAACAAAGCTTCTCA+TGG | - | chr7_1:10465159-10465178 | Msa1009250:intron | 40.0% | |
| TACCTACCTTGCACATGTTT+GGG | + | chr7_1:10465200-10465219 | None:intergenic | 40.0% | |
| ATACCTACCTTGCACATGTT+TGG | + | chr7_1:10465201-10465220 | None:intergenic | 40.0% | |
| AGGTTTATCTACCTTGGTGA+TGG | - | chr7_1:10465350-10465369 | Msa1009250:CDS | 40.0% | |
| !! | TTTATCTACCTTGGTGATGG+TGG | - | chr7_1:10465353-10465372 | Msa1009250:CDS | 40.0% |
| CTTTCTCTAAGTCTCAAGCT+AGG | + | chr7_1:10465392-10465411 | None:intergenic | 40.0% | |
| AAAGTGACTTTGTGATGCCA+AGG | - | chr7_1:10465408-10465427 | Msa1009250:CDS | 40.0% | |
| CACACTGGAAAATTCTTCCT+TGG | + | chr7_1:10465428-10465447 | None:intergenic | 40.0% | |
| ! | CAAGGAAGAATTTTCCAGTG+TGG | - | chr7_1:10465426-10465445 | Msa1009250:CDS | 40.0% |
| TTGCATATCAAATCCCACAC+TGG | + | chr7_1:10465443-10465462 | None:intergenic | 40.0% | |
| CTTGTCAAAGCCGAAATTCA+TGG | - | chr7_1:10465473-10465492 | Msa1009250:CDS | 40.0% | |
| TCAAAGCCGAAATTCATGGT+TGG | - | chr7_1:10465477-10465496 | Msa1009250:CDS | 40.0% | |
| GAAATTCATGGTTGGAGTGA+TGG | - | chr7_1:10465485-10465504 | Msa1009250:intron | 40.0% | |
| ! | TTGGAGTGATGGAGAAGAAT+TGG | - | chr7_1:10465496-10465515 | Msa1009250:intron | 40.0% |
| TAAGGCAATTGACTGGTGAA+CGG | + | chr7_1:10465619-10465638 | None:intergenic | 40.0% | |
| ACCTACCTTGCACATGTTTG+GGG | + | chr7_1:10465199-10465218 | None:intergenic | 45.0% | |
| AAGGCAATTGACTGGTGAAC+GGG | + | chr7_1:10465618-10465637 | None:intergenic | 45.0% | |
| ACCTACCTTGCACATGTTTG+GGG | + | chr7_1:10465199-10465218 | None:intergenic | 45.0% | |
| AAGGCAATTGACTGGTGAAC+GGG | + | chr7_1:10465618-10465637 | None:intergenic | 45.0% | |
| !!! | TTTTAAATTATTATTATTTC+AGG | - | chr7_1:10465286-10465305 | Msa1009250:CDS | 5.0% |
| !! | TTTAAATTATTATTATTTCA+GGG | - | chr7_1:10465287-10465306 | Msa1009250:CDS | 5.0% |
| !!! | TTTTAAATTATTATTATTTC+AGG | - | chr7_1:10465286-10465305 | Msa1009250:CDS | 5.0% |
| !! | TTTAAATTATTATTATTTCA+GGG | - | chr7_1:10465287-10465306 | Msa1009250:CDS | 5.0% |
| TTGTCCCCCAAACATGTGCA+AGG | - | chr7_1:10465191-10465210 | Msa1009250:CDS | 50.0% | |
| CCTACCTTGCACATGTTTGG+GGG | + | chr7_1:10465198-10465217 | None:intergenic | 50.0% | |
| !! | ATCTACCTTGGTGATGGTGG+TGG | - | chr7_1:10465356-10465375 | Msa1009250:CDS | 50.0% |
| !! | TCTACCTTGGTGATGGTGGT+GGG | - | chr7_1:10465357-10465376 | Msa1009250:CDS | 50.0% |
| TTGTCCCCCAAACATGTGCA+AGG | - | chr7_1:10465191-10465210 | Msa1009250:CDS | 50.0% | |
| CCTACCTTGCACATGTTTGG+GGG | + | chr7_1:10465198-10465217 | None:intergenic | 50.0% | |
| !! | ATCTACCTTGGTGATGGTGG+TGG | - | chr7_1:10465356-10465375 | Msa1009250:CDS | 50.0% |
| !! | TCTACCTTGGTGATGGTGGT+GGG | - | chr7_1:10465357-10465376 | Msa1009250:CDS | 50.0% |
| CCCCCAAACATGTGCAAGGT+AGG | - | chr7_1:10465195-10465214 | Msa1009250:CDS | 55.0% | |
| !! | CTACCTTGGTGATGGTGGTG+GGG | - | chr7_1:10465358-10465377 | Msa1009250:CDS | 55.0% |
| CCCCCAAACATGTGCAAGGT+AGG | - | chr7_1:10465195-10465214 | Msa1009250:CDS | 55.0% | |
| !! | CTACCTTGGTGATGGTGGTG+GGG | - | chr7_1:10465358-10465377 | Msa1009250:CDS | 55.0% |
| AGTCCCCACCACCATCACCA+AGG | + | chr7_1:10465364-10465383 | None:intergenic | 60.0% | |
| AGTCCCCACCACCATCACCA+AGG | + | chr7_1:10465364-10465383 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 10464608 | 10465778 | 10464608 | ID=Msa1009250;Name=Msa1009250 |
| chr7_1 | mRNA | 10464608 | 10465778 | 10464608 | ID=Msa1009250-mRNA-1;Parent=Msa1009250;Name=Msa1009250-mRNA-1;_AED=0.03;_eAED=0.03;_QI=138|1|1|1|1|1|3|93|240 |
| chr7_1 | exon | 10464608 | 10465078 | 10464608 | ID=Msa1009250-mRNA-1:exon:2857;Parent=Msa1009250-mRNA-1 |
| chr7_1 | exon | 10465174 | 10465497 | 10465174 | ID=Msa1009250-mRNA-1:exon:2856;Parent=Msa1009250-mRNA-1 |
| chr7_1 | exon | 10465620 | 10465778 | 10465620 | ID=Msa1009250-mRNA-1:exon:2855;Parent=Msa1009250-mRNA-1 |
| chr7_1 | five_prime_UTR | 10465641 | 10465778 | 10465641 | ID=Msa1009250-mRNA-1:five_prime_utr;Parent=Msa1009250-mRNA-1 |
| chr7_1 | CDS | 10465620 | 10465640 | 10465620 | ID=Msa1009250-mRNA-1:cds;Parent=Msa1009250-mRNA-1 |
| chr7_1 | CDS | 10465174 | 10465497 | 10465174 | ID=Msa1009250-mRNA-1:cds;Parent=Msa1009250-mRNA-1 |
| chr7_1 | CDS | 10464701 | 10465078 | 10464701 | ID=Msa1009250-mRNA-1:cds;Parent=Msa1009250-mRNA-1 |
| chr7_1 | three_prime_UTR | 10464608 | 10464700 | 10464608 | ID=Msa1009250-mRNA-1:three_prime_utr;Parent=Msa1009250-mRNA-1 |
| Gene Sequence |
| Protein sequence |
