AlfalfaGEDB | Msa0784520

M. sativa cultivar zhongmu-4 / Msa0784520

KEGG: -
GO: -
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784520	AES99575.2	70.262	343	46	2	1	287	536	878	8.55e-157	469

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784520	sp\|C0LGP4\|Y3475_ARATH	40.588	340	142	5	5	286	663	1000	3.31e-73	245

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784520	G7KGZ3	70.262	343	46	2	1	287	536	878	4.08e-157	469

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0055690	Msa0784520	0.812529	4.050113e-51	-8.615850e-47
Msa0137330	Msa0784520	0.806790	6.933530e-50	-8.615850e-47
Msa0211680	Msa0784520	0.819133	1.362977e-52	-8.615850e-47
Msa0347180	Msa0784520	0.803837	2.880875e-49	-8.615850e-47
Msa0414590	Msa0784520	0.800735	1.253743e-48	-8.615850e-47
Msa0458700	Msa0784520	0.809658	1.697371e-50	-8.615850e-47
Msa0580610	Msa0784520	0.802212	6.243992e-49	-8.615850e-47
Msa0584130	Msa0784520	0.808596	2.865525e-50	-8.615850e-47
Msa0618430	Msa0784520	0.800845	1.190227e-48	-8.615850e-47
Msa0629850	Msa0784520	0.804418	2.180624e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784520	MtrunA17_Chr5g0436861	69.275	345	50	2	1	289	665	1009	7.43e-159	468
Msa0784520	MtrunA17_Chr5g0437331	69.027	339	51	2	1	287	668	1004	5.54e-150	445
Msa0784520	MtrunA17_Chr2g0314031	65.672	335	66	2	2	289	664	996	3.28e-142	425
Msa0784520	MtrunA17_Chr2g0314021	63.663	344	67	3	2	289	668	1009	1.63e-137	413
Msa0784520	MtrunA17_Chr2g0314001	62.791	344	70	3	2	289	668	1009	2.80e-136	409
Msa0784520	MtrunA17_Chr1g0159871	65.217	345	62	5	1	289	594	936	4.77e-132	397
Msa0784520	MtrunA17_Chr5g0436921	81.938	227	41	0	1	227	660	886	7.96e-130	391
Msa0784520	MtrunA17_Chr5g0436841	61.471	340	78	5	1	289	713	1050	2.40e-126	385
Msa0784520	MtrunA17_Chr1g0159881	57.864	337	84	4	1	281	135	469	2.35e-120	353
Msa0784520	MtrunA17_Chr1g0159851	83.810	210	26	1	18	227	458	659	9.58e-117	350

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0784520	AT3G47570.1	40.588	340	142	5	5	286	663	1000	3.37e-74	245
Msa0784520	AT3G47110.1	41.250	320	134	4	22	287	700	1019	9.36e-72	238
Msa0784520	AT3G47090.1	50.446	224	103	3	10	227	668	889	1.27e-67	227
Msa0784520	AT5G39390.1	41.254	303	134	5	28	287	196	497	1.52e-67	218
Msa0784520	AT5G20480.1	42.053	302	133	4	28	287	699	1000	2.57e-65	221
Msa0784520	AT5G20480.2	42.053	302	133	4	28	287	699	1000	2.57e-65	221
Msa0784520	AT3G47580.1	50.990	202	97	1	28	227	690	891	1.14e-64	219
Msa0784520	AT2G24130.1	41.827	208	106	6	26	227	646	844	1.07e-40	150
Msa0784520	AT2G24130.2	41.827	208	106	6	26	227	661	859	1.13e-40	150
Msa0784520	AT3G59730.1	37.004	227	124	5	5	227	298	509	6.15e-40	146

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Find 50 sgRNAs with CRISPR-Local

Find 300 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTTGGTTCTGTTTACAA+AGG	0.583503	5_2:+69151692	Msa0784520:CDS
ACTATAGGATATGTTCCTCC+TGG	0.564251	5_2:+69152202	Msa0784520:CDS
AGCAGCAAAGAGTTTCATGG+CGG	0.757418	5_2:+69151775	Msa0784520:CDS
AGGCTAATTCGTGGAGCTAC+AGG	0.495973	5_2:+69152136	Msa0784520:CDS
AGTAGTAATAGTTCCTAGCA+CGG	0.616975	5_2:-69153452	None:intergenic
AGTCTAGAAAACATGTTGCA+TGG	0.623894	5_2:+69151920	Msa0784520:CDS
AGTTAATTCCTCTACAATTA+AGG	0.192291	5_2:+69152177	Msa0784520:CDS
ATCCTCATCATTGTTATTGG+CGG	0.433021	5_2:+69151503	Msa0784520:five_prime_UTR
ATGGCGGAATGCAAAGCTCT+AGG	0.553074	5_2:+69151791	Msa0784520:CDS
ATTGGATGATGAAAATCCAT+TGG	0.562302	5_2:-69151654	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CATGTAGGAAGAATTAATTG+AGG	-	chr5_2:69151434-69151453	None:intergenic	30.0%
TCTAAAAACTGGATTCTCAA+GGG	+	chr5_2:69151604-69151623	Msa0784520:CDS	30.0%
ATTGGATGATGAAAATCCAT+TGG	-	chr5_2:69151657-69151676	None:intergenic	30.0%
TGAAAGACCTATTGTTGTAA+AGG	+	chr5_2:69151730-69151749	Msa0784520:CDS	30.0%
TTCAACACCTTTACAACAAT+AGG	-	chr5_2:69151740-69151759	None:intergenic	30.0%
TATAGTTCCCTTAATTGTAG+AGG	-	chr5_2:69152188-69152207	None:intergenic	30.0%
TCTACAATTAAGGGAACTAT+AGG	+	chr5_2:69152187-69152206	Msa0784520:CDS	30.0%
ATAACAGAAAGAACTTTACC+AGG	-	chr5_2:69152223-69152242	None:intergenic	30.0%
GCACACCAATTTAAATATAG+AGG	+	chr5_2:69152576-69152595	Msa0784520:intron	30.0%
TACAAGGATTTCATTAACCA+TGG	+	chr5_2:69152685-69152704	Msa0784520:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	69151419	69153460	69151419	ID=Msa0784520;Name=Msa0784520
chr5_2	mRNA	69151419	69153460	69151419	ID=Msa0784520-mRNA-1;Parent=Msa0784520;Name=Msa0784520-mRNA-1;_AED=0.41;_eAED=0.41;_QI=123\|0\|0.5\|1\|1\|1\|2\|0\|289
chr5_2	exon	69151419	69152223	69151419	ID=Msa0784520-mRNA-1:exon:20788;Parent=Msa0784520-mRNA-1
chr5_2	exon	69153273	69153460	69153273	ID=Msa0784520-mRNA-1:exon:20789;Parent=Msa0784520-mRNA-1
chr5_2	five_prime_UTR	69151419	69151541	69151419	ID=Msa0784520-mRNA-1:five_prime_utr;Parent=Msa0784520-mRNA-1
chr5_2	CDS	69151542	69152223	69151542	ID=Msa0784520-mRNA-1:cds;Parent=Msa0784520-mRNA-1
chr5_2	CDS	69153273	69153460	69153273	ID=Msa0784520-mRNA-1:cds;Parent=Msa0784520-mRNA-1

Gene Sequence

>Msa0784520

ATGGCTTTCTTAATTATATATTATATCAAAAGAAATTCTGCGAAGTTACCTTCTTCACCGTCTCTAAAAACTGGATTCTCAAGGGTGACTTATGGAGAGTTGCATGAAGCAACCAATGGATTTTCATCATCCAATTTGGTCGGATCAGGAAACTTTGGTTCTGTTTACAAAGGATCTCTTCTCTATTTTGAAAGACCTATTGTTGTAAAGGTGTTGAATCTTGAAACACGTGGAGCAGCAAAGAGTTTCATGGCGGAATGCAAAGCTCTAGGAAAGATTAAGCACCGGAATCTTGTTAAGATCCTCACTTGTTGTTCAAGTGTTGATTATAAAGGTGAAGATTTCAAGGCTATTGTTTTTGAGTTCATGCCTAATGGGAGTCTAGAAAACATGTTGCATGGCAACGAAGAACATGAGTCTAGAAATCTGAATCTCAATTTCATGAAAAGGTTAGACATTGCTCTCGATGTAGCTCATGCATTGGATTATCTTCACAATGATACAGAACAAGTGGTAGTTCATTGTGACGTTAAGCCGAGCAATGTTCTTCTCGATGATGACAATGTAGCCCATTTAGGAGACTTTGGCTTAGCTAGGCTAATTCGTGGAGCTACAGGAGGTTCAAGTAAAGATCAAGTTAATTCCTCTACAATTAAGGGAACTATAGGATATGTTCCTCCTGTGGATTCATGCTTGCTCATGTCATTTGCTGAAGATCAAACACATGTTGTGGAAAACAACATAAAAGAGTGTCTAGTGATGTTTGCTAAAATAGGAGTTGCATGTTCCGAAGAATTTCCTACTCAGAGAATGCTCACAAAAGATGTTATAGTGAAGTTGCTTGAAATTAAGCAGAAATTACCGTGCTAG

Protein sequence

>Msa0784520

MAFLIIYYIKRNSAKLPSSPSLKTGFSRVTYGELHEATNGFSSSNLVGSGNFGSVYKGSLLYFERPIVVKVLNLETRGAAKSFMAECKALGKIKHRNLVKILTCCSSVDYKGEDFKAIVFEFMPNGSLENMLHGNEEHESRNLNLNFMKRLDIALDVAHALDYLHNDTEQVVVHCDVKPSNVLLDDDNVAHLGDFGLARLIRGATGGSSKDQVNSSTIKGTIGYVPPVDSCLLMSFAEDQTHVVENNIKECLVMFAKIGVACSEEFPTQRMLTKDVIVKLLEIKQKLPC*