Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010870 | XP_003621784.1 | 95.098 | 102 | 1 | 1 | 1 | 98 | 1 | 102 | 4.01e-62 | 194 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010870 | G7KVN5 | 95.098 | 102 | 1 | 1 | 1 | 98 | 1 | 102 | 1.91e-62 | 194 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1010870 | Msa1052440 | 0.899240 | 2.410685e-77 | -8.615850e-47 |
| Msa1010870 | Msa1052450 | 0.898755 | 3.888487e-77 | -8.615850e-47 |
| Msa1010870 | Msa1096130 | 0.823798 | 1.140883e-53 | -8.615850e-47 |
| Msa1010870 | Msa1140980 | 0.816797 | 4.593754e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010870 | MtrunA17_Chr7g0222601 | 95.098 | 102 | 1 | 1 | 1 | 98 | 1 | 102 | 3.69e-66 | 194 |
| Msa1010870 | MtrunA17_Chr1g0212831 | 75.000 | 100 | 18 | 3 | 1 | 94 | 1 | 99 | 4.95e-44 | 138 |
| Msa1010870 | MtrunA17_Chr7g0263161 | 67.816 | 87 | 26 | 1 | 7 | 93 | 4 | 88 | 4.83e-39 | 125 |
| Msa1010870 | MtrunA17_Chr8g0368511 | 60.345 | 58 | 23 | 0 | 10 | 67 | 48 | 105 | 9.45e-24 | 87.4 |
| Msa1010870 | MtrunA17_Chr1g0171941 | 43.939 | 66 | 37 | 0 | 12 | 77 | 14 | 79 | 6.45e-12 | 59.7 |
| Msa1010870 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 12 | 65 | 55 | 108 | 3.02e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010870 | AT3G55240.1 | 82.609 | 92 | 16 | 0 | 6 | 97 | 4 | 95 | 1.55e-51 | 157 |
| Msa1010870 | AT3G28990.1 | 69.048 | 84 | 26 | 0 | 6 | 89 | 4 | 87 | 5.35e-38 | 122 |
| Msa1010870 | AT5G02580.1 | 58.696 | 92 | 36 | 1 | 1 | 92 | 1 | 90 | 1.18e-35 | 117 |
| Msa1010870 | AT5G02580.3 | 56.098 | 82 | 34 | 1 | 11 | 92 | 4 | 83 | 5.60e-28 | 97.4 |
| Msa1010870 | AT1G10657.3 | 48.649 | 74 | 38 | 0 | 10 | 83 | 22 | 95 | 9.94e-24 | 87.0 |
| Msa1010870 | AT1G10657.2 | 50.746 | 67 | 33 | 0 | 10 | 76 | 22 | 88 | 1.58e-22 | 84.3 |
| Msa1010870 | AT5G02580.2 | 71.429 | 49 | 14 | 0 | 1 | 49 | 1 | 49 | 1.99e-21 | 80.5 |
| Msa1010870 | AT1G10657.4 | 36.735 | 98 | 38 | 1 | 10 | 83 | 22 | 119 | 2.24e-18 | 74.3 |
| Msa1010870 | AT1G10657.1 | 37.363 | 91 | 33 | 1 | 10 | 76 | 22 | 112 | 3.89e-17 | 71.2 |
| Msa1010870 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 1.76e-13 | 64.7 |
| Msa1010870 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 1.76e-13 | 64.7 |
| Msa1010870 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 1.76e-13 | 64.7 |
| Msa1010870 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 1.76e-13 | 64.7 |
| Msa1010870 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 2.85e-13 | 63.9 |
| Msa1010870 | AT2G46420.2 | 48.148 | 54 | 28 | 0 | 12 | 65 | 52 | 105 | 1.16e-11 | 59.7 |
| Msa1010870 | AT2G46420.3 | 48.148 | 54 | 28 | 0 | 12 | 65 | 52 | 105 | 1.55e-11 | 59.3 |
| Msa1010870 | AT2G46420.1 | 48.148 | 54 | 28 | 0 | 12 | 65 | 52 | 105 | 1.55e-11 | 59.3 |
| Msa1010870 | AT3G61700.4 | 46.296 | 54 | 29 | 0 | 12 | 65 | 53 | 106 | 3.54e-11 | 58.2 |
| Msa1010870 | AT3G61700.2 | 46.296 | 54 | 29 | 0 | 12 | 65 | 55 | 108 | 3.86e-11 | 58.2 |
| Msa1010870 | AT3G61700.1 | 46.296 | 54 | 29 | 0 | 12 | 65 | 55 | 108 | 4.19e-11 | 58.2 |
| Msa1010870 | AT3G61700.3 | 46.296 | 54 | 29 | 0 | 12 | 65 | 55 | 108 | 4.19e-11 | 58.2 |
| Msa1010870 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 12 | 65 | 14 | 67 | 4.41e-11 | 57.8 |
| Msa1010870 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 12 | 65 | 31 | 84 | 5.30e-11 | 57.8 |
Find 28 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_1:+14343989 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_1:+14343790 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_1:+14344078 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_1:-14346398 | Msa1010870:intron |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_1:-14346445 | Msa1010870:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_1:+14343791 | None:intergenic |
| GATCATTGTTATGGGATAGA+TGG | 0.394538 | 7_1:+14343799 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_1:-14346437 | Msa1010870:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_1:-14343887 | Msa1010870:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_1:-14346444 | Msa1010870:five_prime_UTR |
| AAATGTGATTTGACATATGC+AGG | 0.478682 | 7_1:+14346526 | None:intergenic |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_1:+14343890 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.491025 | 7_1:-14343998 | Msa1010870:three_prime_UTR |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_1:+14344126 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_1:-14346436 | Msa1010870:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_1:+14344081 | None:intergenic |
| AAAATAATGTGCAGTTTGGA+AGG | 0.516152 | 7_1:-14344218 | Msa1010870:intron |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_1:-14343915 | Msa1010870:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_1:-14346220 | Msa1010870:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_1:-14346171 | Msa1010870:intron |
| ATGTGCAGTTTGGAAGGAGC+TGG | 0.542556 | 7_1:-14344212 | Msa1010870:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_1:+14343891 | None:intergenic |
| TATGAAGCAGAAGAAGAAGA+AGG | 0.571910 | 7_1:+14346409 | None:intergenic |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_1:+14346168 | None:intergenic |
| ATCATCGCAGATTCCTCCAA+AGG | 0.604617 | 7_1:-14344094 | Msa1010870:CDS |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_1:-14346232 | Msa1010870:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_1:+14343932 | None:intergenic |
| AATGTGATTTGACATATGCA+GGG | 0.668076 | 7_1:+14346527 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAATTTTAATTACTAA+GGG | + | chr7_1:14344967-14344986 | None:intergenic | 10.0% |
| !! | TAATAAAAAATATAGAAAGT+TGG | + | chr7_1:14345043-14345062 | None:intergenic | 10.0% |
| !! | TAAAAATATTAAAAATGTTG+TGG | - | chr7_1:14345322-14345341 | Msa1010870:intron | 10.0% |
| !! | AAAAATATTAAAAATGTTGT+GGG | - | chr7_1:14345323-14345342 | Msa1010870:intron | 10.0% |
| !! | ATAAATGTTTATTTAATGTA+CGG | + | chr7_1:14346063-14346082 | None:intergenic | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | + | chr7_1:14344201-14344220 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | - | chr7_1:14344703-14344722 | Msa1010870:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | - | chr7_1:14344704-14344723 | Msa1010870:intron | 15.0% |
| !! | AAAAAAAAAAAAATTAGCGA+CGG | + | chr7_1:14344759-14344778 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | - | chr7_1:14344882-14344901 | Msa1010870:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | - | chr7_1:14344883-14344902 | Msa1010870:intron | 15.0% |
| !!! | GAAACAAATTTTAATTACTA+AGG | + | chr7_1:14344968-14344987 | None:intergenic | 15.0% |
| !!! | CTATACACTATATTTTTTTT+TGG | - | chr7_1:14345277-14345296 | Msa1010870:intron | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | + | chr7_1:14345510-14345529 | None:intergenic | 15.0% |
| !!! | ATTATTACTTTTTCTCTTAT+TGG | - | chr7_1:14345529-14345548 | Msa1010870:intron | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | - | chr7_1:14345565-14345584 | Msa1010870:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | + | chr7_1:14345663-14345682 | None:intergenic | 15.0% |
| !!! | AAACATTTTATTTGAGTTTA+GGG | - | chr7_1:14345808-14345827 | Msa1010870:intron | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | - | chr7_1:14343917-14343936 | Msa1010870:three_prime_UTR | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | - | chr7_1:14343918-14343937 | Msa1010870:three_prime_UTR | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | - | chr7_1:14344028-14344047 | Msa1010870:three_prime_UTR | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | - | chr7_1:14344211-14344230 | Msa1010870:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | - | chr7_1:14344300-14344319 | Msa1010870:intron | 20.0% |
| !!! | GAGGGAATTTTTTTTTTTAA+AGG | + | chr7_1:14344531-14344550 | None:intergenic | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | - | chr7_1:14344533-14344552 | Msa1010870:intron | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | + | chr7_1:14345084-14345103 | None:intergenic | 20.0% |
| !! | TTACTATGAAATATTAGACT+TGG | - | chr7_1:14345140-14345159 | Msa1010870:intron | 20.0% |
| !!! | GAAAAGTTTTTAGAATCAAT+AGG | + | chr7_1:14345255-14345274 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCGTGTTT+TGG | + | chr7_1:14345448-14345467 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | + | chr7_1:14345509-14345528 | None:intergenic | 20.0% |
| !! | AATATATTAACCTATTGCAT+GGG | - | chr7_1:14345624-14345643 | Msa1010870:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | + | chr7_1:14345754-14345773 | None:intergenic | 20.0% |
| !!! | CAAACATTTTATTTGAGTTT+AGG | - | chr7_1:14345807-14345826 | Msa1010870:intron | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | - | chr7_1:14345902-14345921 | Msa1010870:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | + | chr7_1:14343808-14343827 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | + | chr7_1:14343850-14343869 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | - | chr7_1:14343994-14344013 | Msa1010870:three_prime_UTR | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | - | chr7_1:14344210-14344229 | Msa1010870:intron | 25.0% |
| !!! | TTATACCTAGTTTGTTATCA+TGG | - | chr7_1:14344347-14344366 | Msa1010870:intron | 25.0% |
| ! | TAAAACCATGATAACAAACT+AGG | + | chr7_1:14344355-14344374 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | - | chr7_1:14344372-14344391 | Msa1010870:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | - | chr7_1:14344461-14344480 | Msa1010870:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | + | chr7_1:14344473-14344492 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | - | chr7_1:14344500-14344519 | Msa1010870:intron | 25.0% |
| !! | TGTTTTGTGATATAAGTTCA+AGG | - | chr7_1:14345000-14345019 | Msa1010870:intron | 25.0% |
| !! | TATGAAATATTAGACTTGGT+AGG | - | chr7_1:14345144-14345163 | Msa1010870:intron | 25.0% |
| !! | ATGAAATATTAGACTTGGTA+GGG | - | chr7_1:14345145-14345164 | Msa1010870:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | + | chr7_1:14345180-14345199 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | - | chr7_1:14345404-14345423 | Msa1010870:intron | 25.0% |
| ! | GAATATATTAACCTATTGCA+TGG | - | chr7_1:14345623-14345642 | Msa1010870:intron | 25.0% |
| !! | CATTCTTTTTCCTTGATTAT+TGG | + | chr7_1:14345915-14345934 | None:intergenic | 25.0% |
| ! | TAATCAAGGAAAAAGAATGA+AGG | - | chr7_1:14345916-14345935 | Msa1010870:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | + | chr7_1:14345999-14346018 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | - | chr7_1:14346083-14346102 | Msa1010870:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | - | chr7_1:14346120-14346139 | Msa1010870:intron | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | + | chr7_1:14346242-14346261 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | + | chr7_1:14346319-14346338 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | - | chr7_1:14346390-14346409 | Msa1010870:intron | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | + | chr7_1:14346417-14346436 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | + | chr7_1:14346418-14346437 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | - | chr7_1:14346418-14346437 | Msa1010870:CDS | 25.0% |
| AGAAAATTCATTGCTAGTGT+TGG | - | chr7_1:14343860-14343879 | Msa1010870:three_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | - | chr7_1:14343861-14343880 | Msa1010870:three_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | - | chr7_1:14343907-14343926 | Msa1010870:three_prime_UTR | 30.0% | |
| GTACAGAAAAAAGAGAGAAA+AGG | + | chr7_1:14343958-14343977 | None:intergenic | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | - | chr7_1:14344073-14344092 | Msa1010870:exon | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | + | chr7_1:14344153-14344172 | None:intergenic | 30.0% | |
| !! | ATTTTGAAAACAAGATGGCT+TGG | + | chr7_1:14344196-14344215 | None:intergenic | 30.0% |
| ! | CAATTTTGCATGACATGAAA+TGG | + | chr7_1:14344244-14344263 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | + | chr7_1:14344447-14344466 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | + | chr7_1:14344516-14344535 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | + | chr7_1:14344517-14344536 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | - | chr7_1:14344563-14344582 | Msa1010870:intron | 30.0% | |
| !! | ATCTTTAGAATCTCTTACTC+AGG | - | chr7_1:14344588-14344607 | Msa1010870:intron | 30.0% |
| TCATCATGAGTAAATTAGAG+TGG | + | chr7_1:14344677-14344696 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | - | chr7_1:14344810-14344829 | Msa1010870:intron | 30.0% |
| ! | TGAAATATTAGACTTGGTAG+GGG | - | chr7_1:14345146-14345165 | Msa1010870:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | + | chr7_1:14345179-14345198 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | + | chr7_1:14345181-14345200 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | - | chr7_1:14345186-14345205 | Msa1010870:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | - | chr7_1:14345189-14345208 | Msa1010870:intron | 30.0% | |
| !! | AGTTTTTCGTGTTTTGGATA+GGG | + | chr7_1:14345442-14345461 | None:intergenic | 30.0% |
| !! | TAGTTTTTCGTGTTTTGGAT+AGG | + | chr7_1:14345443-14345462 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | + | chr7_1:14345492-14345511 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | + | chr7_1:14345751-14345770 | None:intergenic | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | + | chr7_1:14346052-14346071 | None:intergenic | 30.0% | |
| AAAATAATGTGCAGTTTGGA+AGG | - | chr7_1:14346087-14346106 | Msa1010870:intron | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | + | chr7_1:14346265-14346284 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | + | chr7_1:14346266-14346285 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | + | chr7_1:14346517-14346536 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | + | chr7_1:14346518-14346537 | None:intergenic | 30.0% | |
| TATGAAGCAGAAGAAGAAGA+AGG | + | chr7_1:14343899-14343918 | None:intergenic | 35.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | + | chr7_1:14344434-14344453 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | + | chr7_1:14344549-14344568 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | + | chr7_1:14344550-14344569 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | - | chr7_1:14344549-14344568 | Msa1010870:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | - | chr7_1:14344562-14344581 | Msa1010870:intron | 35.0% | |
| ! | GAGATTCTAAAGATATCCCT+TGG | + | chr7_1:14344582-14344601 | None:intergenic | 35.0% |
| TTAGCGACGGAAATTATCAA+CGG | + | chr7_1:14344746-14344765 | None:intergenic | 35.0% | |
| ! | ATTCTCCATGTCAATTTTGG+TGG | - | chr7_1:14344813-14344832 | Msa1010870:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | - | chr7_1:14344814-14344833 | Msa1010870:intron | 35.0% |
| TAATCGATATCTTCCACACA+AGG | - | chr7_1:14345969-14345988 | Msa1010870:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | + | chr7_1:14345985-14346004 | None:intergenic | 35.0% | |
| !! | GAGAATAGATCGTTTTCAAG+GGG | + | chr7_1:14346264-14346283 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | - | chr7_1:14346307-14346326 | Msa1010870:intron | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | + | chr7_1:14346376-14346395 | None:intergenic | 35.0% | |
| GATCATTGTTATGGGATAGA+TGG | + | chr7_1:14346509-14346528 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | - | chr7_1:14343869-14343888 | Msa1010870:three_prime_UTR | 40.0% |
| ! | TCATGGCTTTTGACATGTGT+TGG | - | chr7_1:14344011-14344030 | Msa1010870:three_prime_UTR | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | - | chr7_1:14344085-14344104 | Msa1010870:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | + | chr7_1:14344140-14344159 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | + | chr7_1:14344382-14344401 | None:intergenic | 40.0% | |
| TCTCTTACTCAGGAATCTCA+TGG | - | chr7_1:14344598-14344617 | Msa1010870:intron | 40.0% | |
| TAGCGACGGAAATTATCAAC+GGG | + | chr7_1:14344745-14344764 | None:intergenic | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | + | chr7_1:14344821-14344840 | None:intergenic | 40.0% | |
| ! | AATATTAGACTTGGTAGGGG+TGG | - | chr7_1:14345149-14345168 | Msa1010870:intron | 40.0% |
| ! | ATATTAGACTTGGTAGGGGT+GGG | - | chr7_1:14345150-14345169 | Msa1010870:intron | 40.0% |
| GTTGATCTACACATCTCTGT+CGG | + | chr7_1:14345376-14345395 | None:intergenic | 40.0% | |
| ACGAATTCAACCCATGCAAT+AGG | + | chr7_1:14345637-14345656 | None:intergenic | 40.0% | |
| ! | CGATGATTTTCTGTAGCATC+TGG | + | chr7_1:14346198-14346217 | None:intergenic | 40.0% |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | + | chr7_1:14346230-14346249 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | - | chr7_1:14343868-14343887 | Msa1010870:three_prime_UTR | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | - | chr7_1:14344134-14344153 | Msa1010870:CDS | 45.0% | |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | + | chr7_1:14346182-14346201 | None:intergenic | 45.0% |
| ATCATCGCAGATTCCTCCAA+AGG | - | chr7_1:14346211-14346230 | Msa1010870:CDS | 45.0% | |
| !!! | ATTTTTTGAATAAATATATA+TGG | - | chr7_1:14346446-14346465 | Msa1010870:five_prime_UTR | 5.0% |
| ATGTGCAGTTTGGAAGGAGC+TGG | - | chr7_1:14346093-14346112 | Msa1010870:intron | 50.0% | |
| TAAAGACGAGCGAATGTCCG+AGG | - | chr7_1:14346162-14346181 | Msa1010870:intron | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | + | chr7_1:14346227-14346246 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 14343781 | 14346546 | 14343781 | ID=Msa1010870;Name=Msa1010870 |
| chr7_1 | mRNA | 14343781 | 14346546 | 14343781 | ID=Msa1010870-mRNA-1;Parent=Msa1010870;Name=Msa1010870-mRNA-1;_AED=0.09;_eAED=0.09;_QI=106|1|1|1|1|1|3|297|98 |
| chr7_1 | exon | 14343781 | 14344226 | 14343781 | ID=Msa1010870-mRNA-1:exon:3713;Parent=Msa1010870-mRNA-1 |
| chr7_1 | exon | 14346172 | 14346277 | 14346172 | ID=Msa1010870-mRNA-1:exon:3712;Parent=Msa1010870-mRNA-1 |
| chr7_1 | exon | 14346399 | 14346546 | 14346399 | ID=Msa1010870-mRNA-1:exon:3711;Parent=Msa1010870-mRNA-1 |
| chr7_1 | five_prime_UTR | 14346441 | 14346546 | 14346441 | ID=Msa1010870-mRNA-1:five_prime_utr;Parent=Msa1010870-mRNA-1 |
| chr7_1 | CDS | 14346399 | 14346440 | 14346399 | ID=Msa1010870-mRNA-1:cds;Parent=Msa1010870-mRNA-1 |
| chr7_1 | CDS | 14346172 | 14346277 | 14346172 | ID=Msa1010870-mRNA-1:cds;Parent=Msa1010870-mRNA-1 |
| chr7_1 | CDS | 14344078 | 14344226 | 14344078 | ID=Msa1010870-mRNA-1:cds;Parent=Msa1010870-mRNA-1 |
| chr7_1 | three_prime_UTR | 14343781 | 14344077 | 14343781 | ID=Msa1010870-mRNA-1:three_prime_utr;Parent=Msa1010870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
