Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140980 | XP_003621784.1 | 97.059 | 102 | 0 | 1 | 1 | 99 | 1 | 102 | 4.50e-63 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140980 | G7KVN5 | 97.059 | 102 | 0 | 1 | 1 | 99 | 1 | 102 | 2.15e-63 | 196 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1010870 | Msa1140980 | 0.816797 | 4.593754e-52 | -8.615850e-47 |
| Msa1052440 | Msa1140980 | 0.830500 | 2.836036e-55 | -8.615850e-47 |
| Msa1052450 | Msa1140980 | 0.829543 | 4.854708e-55 | -8.615850e-47 |
| Msa1096130 | Msa1140980 | 0.904644 | 9.895971e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140980 | MtrunA17_Chr7g0222601 | 97.059 | 102 | 0 | 1 | 1 | 99 | 1 | 102 | 4.14e-67 | 196 |
| Msa1140980 | MtrunA17_Chr1g0212831 | 75.248 | 101 | 17 | 3 | 1 | 95 | 1 | 99 | 2.76e-44 | 139 |
| Msa1140980 | MtrunA17_Chr7g0263161 | 67.816 | 87 | 26 | 1 | 8 | 94 | 4 | 88 | 6.68e-39 | 124 |
| Msa1140980 | MtrunA17_Chr8g0368511 | 60.345 | 58 | 23 | 0 | 11 | 68 | 48 | 105 | 7.63e-24 | 87.4 |
| Msa1140980 | MtrunA17_Chr1g0171941 | 50.000 | 54 | 27 | 0 | 13 | 66 | 14 | 67 | 5.75e-14 | 65.5 |
| Msa1140980 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 13 | 66 | 55 | 108 | 4.25e-13 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1140980 | AT3G55240.1 | 81.915 | 94 | 17 | 0 | 5 | 98 | 2 | 95 | 6.92e-52 | 158 |
| Msa1140980 | AT3G28990.1 | 70.238 | 84 | 25 | 0 | 7 | 90 | 4 | 87 | 2.17e-38 | 124 |
| Msa1140980 | AT5G02580.1 | 59.140 | 93 | 35 | 2 | 1 | 93 | 1 | 90 | 1.46e-34 | 114 |
| Msa1140980 | AT5G02580.3 | 57.317 | 82 | 33 | 1 | 12 | 93 | 4 | 83 | 1.51e-28 | 99.0 |
| Msa1140980 | AT1G10657.3 | 48.649 | 74 | 38 | 0 | 11 | 84 | 22 | 95 | 9.15e-24 | 87.4 |
| Msa1140980 | AT1G10657.2 | 50.746 | 67 | 33 | 0 | 11 | 77 | 22 | 88 | 1.39e-22 | 84.3 |
| Msa1140980 | AT5G02580.2 | 70.000 | 50 | 14 | 1 | 1 | 50 | 1 | 49 | 9.67e-20 | 76.3 |
| Msa1140980 | AT1G10657.4 | 36.735 | 98 | 38 | 1 | 11 | 84 | 22 | 119 | 1.97e-18 | 74.3 |
| Msa1140980 | AT1G10657.1 | 37.363 | 91 | 33 | 1 | 11 | 77 | 22 | 112 | 3.65e-17 | 71.2 |
| Msa1140980 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 13 | 66 | 31 | 84 | 8.04e-14 | 65.5 |
| Msa1140980 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 8.59e-14 | 65.5 |
| Msa1140980 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 1.42e-13 | 65.1 |
| Msa1140980 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 1.42e-13 | 65.1 |
| Msa1140980 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 1.42e-13 | 65.1 |
| Msa1140980 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 1.42e-13 | 65.1 |
| Msa1140980 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 13 | 66 | 14 | 67 | 2.32e-13 | 64.3 |
| Msa1140980 | AT2G46420.2 | 48.148 | 54 | 28 | 0 | 13 | 66 | 52 | 105 | 1.64e-11 | 59.3 |
| Msa1140980 | AT2G46420.3 | 48.148 | 54 | 28 | 0 | 13 | 66 | 52 | 105 | 2.35e-11 | 58.9 |
| Msa1140980 | AT2G46420.1 | 48.148 | 54 | 28 | 0 | 13 | 66 | 52 | 105 | 2.35e-11 | 58.9 |
| Msa1140980 | AT3G61700.4 | 43.548 | 62 | 35 | 0 | 5 | 66 | 45 | 106 | 4.04e-11 | 58.2 |
| Msa1140980 | AT3G61700.2 | 42.254 | 71 | 35 | 1 | 2 | 66 | 38 | 108 | 4.45e-11 | 58.2 |
| Msa1140980 | AT3G61700.1 | 43.548 | 62 | 35 | 0 | 5 | 66 | 47 | 108 | 5.03e-11 | 57.8 |
| Msa1140980 | AT3G61700.3 | 43.548 | 62 | 35 | 0 | 5 | 66 | 47 | 108 | 5.03e-11 | 57.8 |
Find 26 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_4:-13710496 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_4:-13710697 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_4:-13710407 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_4:+13708104 | Msa1140980:CDS |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_4:+13708054 | Msa1140980:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_4:-13710696 | None:intergenic |
| GATCATTGTTATGGGATAGA+TGG | 0.394538 | 7_4:-13710688 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_4:+13708062 | Msa1140980:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_4:+13710600 | Msa1140980:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_4:+13708055 | Msa1140980:five_prime_UTR |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_4:-13710597 | None:intergenic |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_4:-13710359 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_4:+13708063 | Msa1140980:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_4:-13710404 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.504738 | 7_4:+13710487 | Msa1140980:three_prime_UTR |
| AAAATAATGTGCAGTTTGGA+AGG | 0.516152 | 7_4:+13710267 | Msa1140980:intron |
| GATTTGACATATGCAACATA+AGG | 0.517335 | 7_4:-13707967 | None:intergenic |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_4:+13710572 | Msa1140980:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_4:+13708282 | Msa1140980:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_4:+13708331 | Msa1140980:CDS |
| ATGTGCAGTTTGGAAGGAGC+TGG | 0.542556 | 7_4:+13710273 | Msa1140980:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_4:-13710596 | None:intergenic |
| ATCATCTCAGATTCCTCCAA+AGG | 0.566751 | 7_4:+13710391 | Msa1140980:CDS |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_4:-13708334 | None:intergenic |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_4:+13708270 | Msa1140980:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_4:-13710555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAAAAATATAGAAAGT+TGG | - | chr7_4:13709231-13709250 | None:intergenic | 10.0% |
| !!! | ATACACTATATATATTTTTT+TGG | + | chr7_4:13709455-13709474 | Msa1140980:intron | 10.0% |
| !! | TAAAAATATTATAAATGTTG+TGG | + | chr7_4:13709500-13709519 | Msa1140980:intron | 10.0% |
| !! | AAAAATATTATAAATGTTGT+GGG | + | chr7_4:13709501-13709520 | Msa1140980:intron | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | - | chr7_4:13708398-13708417 | None:intergenic | 15.0% |
| !!! | AGGGAATTTTTTTTTTTTAA+AGG | - | chr7_4:13708731-13708750 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | + | chr7_4:13708903-13708922 | Msa1140980:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | + | chr7_4:13708904-13708923 | Msa1140980:intron | 15.0% |
| !! | ATAAAAAAAAAAATTAGCGA+CGG | - | chr7_4:13708946-13708965 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | + | chr7_4:13709071-13709090 | Msa1140980:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | + | chr7_4:13709072-13709091 | Msa1140980:intron | 15.0% |
| !! | AAACAAATTCTAATTACTAA+GGG | - | chr7_4:13709155-13709174 | None:intergenic | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | - | chr7_4:13709688-13709707 | None:intergenic | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | + | chr7_4:13709743-13709762 | Msa1140980:intron | 15.0% |
| !! | AATATATTAATCTATTGCAT+GGG | + | chr7_4:13709802-13709821 | Msa1140980:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | - | chr7_4:13709841-13709860 | None:intergenic | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | + | chr7_4:13708114-13708133 | Msa1140980:intron | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | + | chr7_4:13708115-13708134 | Msa1140980:intron | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | + | chr7_4:13708225-13708244 | Msa1140980:intron | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | + | chr7_4:13708408-13708427 | Msa1140980:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | + | chr7_4:13708500-13708519 | Msa1140980:intron | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | + | chr7_4:13708734-13708753 | Msa1140980:intron | 20.0% |
| !! | TAAAAAAAAAAATTAGCGAC+GGG | - | chr7_4:13708945-13708964 | None:intergenic | 20.0% |
| !! | GAAACAAATTCTAATTACTA+AGG | - | chr7_4:13709156-13709175 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | - | chr7_4:13709272-13709291 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCCTGTTT+TGG | - | chr7_4:13709626-13709645 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | - | chr7_4:13709687-13709706 | None:intergenic | 20.0% |
| !!! | ATTATTACTTTTTCTCTCAT+TGG | + | chr7_4:13709707-13709726 | Msa1140980:intron | 20.0% |
| !! | GAATATATTAATCTATTGCA+TGG | + | chr7_4:13709801-13709820 | Msa1140980:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | - | chr7_4:13709932-13709951 | None:intergenic | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | + | chr7_4:13710079-13710098 | Msa1140980:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | - | chr7_4:13708002-13708021 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | - | chr7_4:13708044-13708063 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | + | chr7_4:13708191-13708210 | Msa1140980:intron | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | + | chr7_4:13708407-13708426 | Msa1140980:intron | 25.0% |
| ! | TTATACCTAGTTAGTTATCA+TGG | + | chr7_4:13708547-13708566 | Msa1140980:intron | 25.0% |
| ! | TAAAACCATGATAACTAACT+AGG | - | chr7_4:13708555-13708574 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | + | chr7_4:13708572-13708591 | Msa1140980:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | + | chr7_4:13708661-13708680 | Msa1140980:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | - | chr7_4:13708673-13708692 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | + | chr7_4:13708700-13708719 | Msa1140980:intron | 25.0% |
| !! | TGTTTTGTGATATAAGTTCA+AGG | + | chr7_4:13709188-13709207 | Msa1140980:intron | 25.0% |
| ! | TTACTATGAAATACTAGACT+TGG | + | chr7_4:13709328-13709347 | Msa1140980:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | - | chr7_4:13709368-13709387 | None:intergenic | 25.0% |
| ! | TAGTGTATAGAAGAATCAAT+AGG | - | chr7_4:13709443-13709462 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | + | chr7_4:13709582-13709601 | Msa1140980:intron | 25.0% |
| !! | AGCAAAGATTATTTGAGTTT+AGG | + | chr7_4:13709984-13710003 | Msa1140980:intron | 25.0% |
| !! | GCAAAGATTATTTGAGTTTA+GGG | + | chr7_4:13709985-13710004 | Msa1140980:intron | 25.0% |
| !! | CATTCTTTTTCCTTGATTAT+TGG | - | chr7_4:13710092-13710111 | None:intergenic | 25.0% |
| ! | TAATCAAGGAAAAAGAATGA+AGG | + | chr7_4:13710093-13710112 | Msa1140980:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | - | chr7_4:13710179-13710198 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | + | chr7_4:13710263-13710282 | Msa1140980:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | + | chr7_4:13710300-13710319 | Msa1140980:CDS | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | - | chr7_4:13710422-13710441 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | - | chr7_4:13710499-13710518 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | + | chr7_4:13710572-13710591 | Msa1140980:three_prime_UTR | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | - | chr7_4:13710599-13710618 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | - | chr7_4:13710600-13710619 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | + | chr7_4:13710600-13710619 | Msa1140980:three_prime_UTR | 25.0% |
| GATTTGACATATGCAACATA+AGG | - | chr7_4:13707970-13707989 | None:intergenic | 30.0% | |
| AGAAAATTCATTGCTAGTGT+TGG | + | chr7_4:13708054-13708073 | Msa1140980:five_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | + | chr7_4:13708055-13708074 | Msa1140980:five_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | + | chr7_4:13708104-13708123 | Msa1140980:CDS | 30.0% | |
| GTACAGAAAAAAGAGAGAAA+AGG | - | chr7_4:13708155-13708174 | None:intergenic | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | + | chr7_4:13708270-13708289 | Msa1140980:CDS | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | - | chr7_4:13708350-13708369 | None:intergenic | 30.0% | |
| !! | ATTTTGAAAACAAGATGGCT+TGG | - | chr7_4:13708393-13708412 | None:intergenic | 30.0% |
| ! | CAATTTTGCATGACATGAAA+TGG | - | chr7_4:13708444-13708463 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | - | chr7_4:13708647-13708666 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | - | chr7_4:13708716-13708735 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | - | chr7_4:13708717-13708736 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | + | chr7_4:13708764-13708783 | Msa1140980:intron | 30.0% | |
| TCATCATGTGTAAATTAGAG+TGG | - | chr7_4:13708877-13708896 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | + | chr7_4:13708999-13709018 | Msa1140980:intron | 30.0% |
| ! | TATGAAATACTAGACTTGGT+AGG | + | chr7_4:13709332-13709351 | Msa1140980:intron | 30.0% |
| ! | ATGAAATACTAGACTTGGTA+GGG | + | chr7_4:13709333-13709352 | Msa1140980:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | - | chr7_4:13709367-13709386 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | - | chr7_4:13709369-13709388 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | + | chr7_4:13709374-13709393 | Msa1140980:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | + | chr7_4:13709377-13709396 | Msa1140980:intron | 30.0% | |
| !! | AGTTTTTCCTGTTTTGGATA+GGG | - | chr7_4:13709620-13709639 | None:intergenic | 30.0% |
| !! | TAGTTTTTCCTGTTTTGGAT+AGG | - | chr7_4:13709621-13709640 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | - | chr7_4:13709670-13709689 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | - | chr7_4:13709929-13709948 | None:intergenic | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | - | chr7_4:13710232-13710251 | None:intergenic | 30.0% | |
| AAAATAATGTGCAGTTTGGA+AGG | + | chr7_4:13710267-13710286 | Msa1140980:intron | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | - | chr7_4:13710445-13710464 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | - | chr7_4:13710446-13710465 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | - | chr7_4:13710699-13710718 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | - | chr7_4:13710700-13710719 | None:intergenic | 30.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | - | chr7_4:13708634-13708653 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | - | chr7_4:13708750-13708769 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | - | chr7_4:13708751-13708770 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | + | chr7_4:13708750-13708769 | Msa1140980:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | + | chr7_4:13708763-13708782 | Msa1140980:intron | 35.0% | |
| !! | GTCTTTAGAATCTCTTACTC+AGG | + | chr7_4:13708789-13708808 | Msa1140980:intron | 35.0% |
| ! | ATTCTCCATGTCAATTTTGG+TGG | + | chr7_4:13709002-13709021 | Msa1140980:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | + | chr7_4:13709003-13709022 | Msa1140980:intron | 35.0% |
| ! | TGAAATACTAGACTTGGTAG+GGG | + | chr7_4:13709334-13709353 | Msa1140980:intron | 35.0% |
| GAATAAAGAAGTTGAGGTCT+TGG | + | chr7_4:13709588-13709607 | Msa1140980:intron | 35.0% | |
| GATATGATATCTTCCACACA+AGG | + | chr7_4:13710149-13710168 | Msa1140980:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | - | chr7_4:13710165-13710184 | None:intergenic | 35.0% | |
| ! | AGATGATTTTCTGTAGCATC+TGG | - | chr7_4:13710378-13710397 | None:intergenic | 35.0% |
| !! | GAGAATAGATCGTTTTCAAG+GGG | - | chr7_4:13710444-13710463 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | + | chr7_4:13710487-13710506 | Msa1140980:three_prime_UTR | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | - | chr7_4:13710558-13710577 | None:intergenic | 35.0% | |
| GATCATTGTTATGGGATAGA+TGG | - | chr7_4:13710691-13710710 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | + | chr7_4:13708063-13708082 | Msa1140980:exon | 40.0% |
| GAAGCAGAAGAAGAAGAAGA+AGG | - | chr7_4:13708093-13708112 | None:intergenic | 40.0% | |
| ! | TCATGGCTTTTGACATGTGT+TGG | + | chr7_4:13708208-13708227 | Msa1140980:intron | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | + | chr7_4:13708282-13708301 | Msa1140980:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | - | chr7_4:13708337-13708356 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | - | chr7_4:13708582-13708601 | None:intergenic | 40.0% | |
| ! | GAGATTCTAAAGACATCCCT+TGG | - | chr7_4:13708783-13708802 | None:intergenic | 40.0% |
| TCTCTTACTCAGGAATCTCA+TGG | + | chr7_4:13708799-13708818 | Msa1140980:intron | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | - | chr7_4:13709010-13709029 | None:intergenic | 40.0% | |
| GTTGATCTACACATCTCTGT+CGG | - | chr7_4:13709554-13709573 | None:intergenic | 40.0% | |
| GATTCATCCCTATCCAAAAC+AGG | + | chr7_4:13709610-13709629 | Msa1140980:intron | 40.0% | |
| ATCATCTCAGATTCCTCCAA+AGG | + | chr7_4:13710391-13710410 | Msa1140980:CDS | 40.0% | |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | - | chr7_4:13710410-13710429 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | + | chr7_4:13708062-13708081 | Msa1140980:exon | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | + | chr7_4:13708331-13708350 | Msa1140980:CDS | 45.0% | |
| ! | AATACTAGACTTGGTAGGGG+TGG | + | chr7_4:13709337-13709356 | Msa1140980:intron | 45.0% |
| ! | ATACTAGACTTGGTAGGGGT+GGG | + | chr7_4:13709338-13709357 | Msa1140980:intron | 45.0% |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | - | chr7_4:13710362-13710381 | None:intergenic | 45.0% |
| !!! | ATAAATTTTTATTTAATGTA+CGG | - | chr7_4:13710243-13710262 | None:intergenic | 5.0% |
| !!! | ATTTTTTGAATAAATATATA+TGG | + | chr7_4:13710628-13710647 | Msa1140980:three_prime_UTR | 5.0% |
| ATGTGCAGTTTGGAAGGAGC+TGG | + | chr7_4:13710273-13710292 | Msa1140980:intron | 50.0% | |
| TAAAGACGAGCGAATGTCCG+AGG | + | chr7_4:13710342-13710361 | Msa1140980:CDS | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | - | chr7_4:13710407-13710426 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 13707957 | 13710728 | 13707957 | ID=Msa1140980;Name=Msa1140980 |
| chr7_4 | mRNA | 13707957 | 13710728 | 13707957 | ID=Msa1140980-mRNA-1;Parent=Msa1140980;Name=Msa1140980-mRNA-1;_AED=0.03;_eAED=0.03;_QI=124|1|1|1|1|1|3|299|99 |
| chr7_4 | exon | 13707957 | 13708125 | 13707957 | ID=Msa1140980-mRNA-1:exon:3222;Parent=Msa1140980-mRNA-1 |
| chr7_4 | exon | 13708247 | 13708352 | 13708247 | ID=Msa1140980-mRNA-1:exon:3223;Parent=Msa1140980-mRNA-1 |
| chr7_4 | exon | 13710281 | 13710728 | 13710281 | ID=Msa1140980-mRNA-1:exon:3224;Parent=Msa1140980-mRNA-1 |
| chr7_4 | five_prime_UTR | 13707957 | 13708080 | 13707957 | ID=Msa1140980-mRNA-1:five_prime_utr;Parent=Msa1140980-mRNA-1 |
| chr7_4 | CDS | 13708081 | 13708125 | 13708081 | ID=Msa1140980-mRNA-1:cds;Parent=Msa1140980-mRNA-1 |
| chr7_4 | CDS | 13708247 | 13708352 | 13708247 | ID=Msa1140980-mRNA-1:cds;Parent=Msa1140980-mRNA-1 |
| chr7_4 | CDS | 13710281 | 13710429 | 13710281 | ID=Msa1140980-mRNA-1:cds;Parent=Msa1140980-mRNA-1 |
| chr7_4 | three_prime_UTR | 13710430 | 13710728 | 13710430 | ID=Msa1140980-mRNA-1:three_prime_utr;Parent=Msa1140980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
