Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096130 | XP_003621784.1 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.94e-64 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096130 | G7KVN5 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 4.27e-64 | 198 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0441670 | Msa1096130 | 0.801671 | 8.064653e-49 | -8.615850e-47 |
| Msa0995130 | Msa1096130 | 0.810019 | 1.419230e-50 | -8.615850e-47 |
| Msa1010870 | Msa1096130 | 0.823798 | 1.140883e-53 | -8.615850e-47 |
| Msa1052440 | Msa1096130 | 0.820440 | 6.852270e-53 | -8.615850e-47 |
| Msa1052450 | Msa1096130 | 0.817857 | 2.652397e-52 | -8.615850e-47 |
| Msa1096130 | Msa1140980 | 0.904644 | 9.895971e-80 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096130 | MtrunA17_Chr7g0222601 | 98.039 | 102 | 0 | 1 | 1 | 100 | 1 | 102 | 8.22e-68 | 198 |
| Msa1096130 | MtrunA17_Chr1g0212831 | 74.510 | 102 | 17 | 3 | 1 | 96 | 1 | 99 | 3.73e-44 | 138 |
| Msa1096130 | MtrunA17_Chr7g0263161 | 67.816 | 87 | 26 | 1 | 9 | 95 | 4 | 88 | 6.95e-39 | 124 |
| Msa1096130 | MtrunA17_Chr8g0368511 | 54.545 | 66 | 30 | 0 | 4 | 69 | 40 | 105 | 2.24e-24 | 89.0 |
| Msa1096130 | MtrunA17_Chr1g0171941 | 50.000 | 54 | 27 | 0 | 14 | 67 | 14 | 67 | 5.17e-14 | 65.5 |
| Msa1096130 | MtrunA17_Chr8g0347131 | 48.148 | 54 | 28 | 0 | 14 | 67 | 55 | 108 | 3.72e-13 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1096130 | AT3G55240.1 | 81.915 | 94 | 17 | 0 | 6 | 99 | 2 | 95 | 5.48e-52 | 158 |
| Msa1096130 | AT3G28990.1 | 70.238 | 84 | 25 | 0 | 8 | 91 | 4 | 87 | 2.23e-38 | 124 |
| Msa1096130 | AT5G02580.1 | 58.511 | 94 | 35 | 2 | 1 | 94 | 1 | 90 | 1.82e-34 | 114 |
| Msa1096130 | AT5G02580.3 | 57.317 | 82 | 33 | 1 | 13 | 94 | 4 | 83 | 1.39e-28 | 99.0 |
| Msa1096130 | AT1G10657.3 | 45.122 | 82 | 45 | 0 | 4 | 85 | 14 | 95 | 2.56e-24 | 89.0 |
| Msa1096130 | AT1G10657.2 | 46.667 | 75 | 40 | 0 | 4 | 78 | 14 | 88 | 4.17e-23 | 85.9 |
| Msa1096130 | AT5G02580.2 | 68.627 | 51 | 14 | 1 | 1 | 51 | 1 | 49 | 1.29e-19 | 75.9 |
| Msa1096130 | AT1G10657.4 | 34.906 | 106 | 45 | 1 | 4 | 85 | 14 | 119 | 7.06e-19 | 75.5 |
| Msa1096130 | AT1G10657.1 | 35.354 | 99 | 40 | 1 | 4 | 78 | 14 | 112 | 1.34e-17 | 72.4 |
| Msa1096130 | AT5G04090.6 | 48.148 | 54 | 28 | 0 | 14 | 67 | 31 | 84 | 7.10e-14 | 65.9 |
| Msa1096130 | AT5G04090.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 8.29e-14 | 65.5 |
| Msa1096130 | AT3G10250.2 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1096130 | AT3G10250.5 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1096130 | AT3G10250.1 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1096130 | AT3G10250.4 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 1.28e-13 | 65.1 |
| Msa1096130 | AT3G10250.3 | 48.148 | 54 | 28 | 0 | 14 | 67 | 14 | 67 | 2.24e-13 | 64.3 |
| Msa1096130 | AT2G46420.2 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 1.84e-11 | 58.9 |
| Msa1096130 | AT2G46420.3 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1096130 | AT2G46420.1 | 43.662 | 71 | 35 | 1 | 2 | 67 | 35 | 105 | 2.88e-11 | 58.5 |
| Msa1096130 | AT3G61700.4 | 43.548 | 62 | 35 | 0 | 6 | 67 | 45 | 106 | 5.19e-11 | 57.8 |
| Msa1096130 | AT3G61700.2 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.38e-11 | 57.8 |
| Msa1096130 | AT3G61700.1 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
| Msa1096130 | AT3G61700.3 | 43.548 | 62 | 35 | 0 | 6 | 67 | 47 | 108 | 5.62e-11 | 57.8 |
Find 26 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAGAAAAGCCTAGTAATTT+TGG | 0.143728 | 7_3:-19975738 | None:intergenic |
| TGCAAATCTGATCATTGTTA+TGG | 0.266409 | 7_3:-19975937 | None:intergenic |
| TTAGTCGTTGGTTGAACCTT+TGG | 0.358668 | 7_3:-19975649 | None:intergenic |
| TTCTGCTTCATACATTCATA+TGG | 0.365394 | 7_3:+19973336 | Msa1096130:CDS |
| AGAAAATTCATTGCTAGTGT+TGG | 0.385850 | 7_3:+19973283 | Msa1096130:five_prime_UTR |
| GCAAATCTGATCATTGTTAT+GGG | 0.392659 | 7_3:-19975936 | None:intergenic |
| GATCATTGTTATGGGATAGA+TGG | 0.394538 | 7_3:-19975928 | None:intergenic |
| CATTGCTAGTGTTGGGATCA+TGG | 0.397200 | 7_3:+19973291 | Msa1096130:exon |
| ATGTATTGCATGCATATATA+TGG | 0.409540 | 7_3:+19975840 | Msa1096130:three_prime_UTR |
| GAAAATTCATTGCTAGTGTT+GGG | 0.423739 | 7_3:+19973284 | Msa1096130:five_prime_UTR |
| TATATATGCATGCAATACAT+AGG | 0.484608 | 7_3:-19975837 | None:intergenic |
| CATCTGGTTTGTCTCTTCCT+CGG | 0.492956 | 7_3:-19975601 | None:intergenic |
| ATTGCTAGTGTTGGGATCAT+GGG | 0.493543 | 7_3:+19973292 | Msa1096130:exon |
| GTCGTTGGTTGAACCTTTGG+AGG | 0.501576 | 7_3:-19975646 | None:intergenic |
| TGCAACAAGCCAAAATTACT+AGG | 0.504738 | 7_3:+19975729 | Msa1096130:three_prime_UTR |
| AAAATAATGTGCAGTTTGGA+AGG | 0.516152 | 7_3:+19975509 | Msa1096130:intron |
| GATTTGACATATGCAACATA+AGG | 0.517335 | 7_3:-19973196 | None:intergenic |
| TAGTTGCATAACTTTATATG+TGG | 0.532767 | 7_3:+19975812 | Msa1096130:three_prime_UTR |
| CATGACAAAGGAAGAATGCA+TGG | 0.541507 | 7_3:+19973514 | Msa1096130:CDS |
| AAGCCTGTCATAACTTCCAC+TGG | 0.541686 | 7_3:+19973563 | Msa1096130:CDS |
| ATGTGCAGTTTGGAAGGAGC+TGG | 0.542556 | 7_3:+19975515 | Msa1096130:intron |
| ATATATGCATGCAATACATA+GGG | 0.561068 | 7_3:-19975836 | None:intergenic |
| ATCATCTCAGATTCCTCCAA+AGG | 0.566751 | 7_3:+19975633 | Msa1096130:CDS |
| ATACCAGTGGAAGTTATGAC+AGG | 0.586270 | 7_3:-19973566 | None:intergenic |
| TTTGATCTTTCACATGACAA+AGG | 0.610557 | 7_3:+19973502 | Msa1096130:CDS |
| CAACTAGTGACATATTACAC+TGG | 0.649158 | 7_3:-19975795 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAACAAATTTTAATTACTAA+GGG | - | chr7_3:19974385-19974404 | None:intergenic | 10.0% |
| !! | TAATAAAAAATATAGAAAGT+TGG | - | chr7_3:19974461-19974480 | None:intergenic | 10.0% |
| !!! | ATACACTATATATATTTTTT+TGG | + | chr7_3:19974697-19974716 | Msa1096130:intron | 10.0% |
| !! | TAAAAATATTAAAAATGTTG+TGG | + | chr7_3:19974742-19974761 | Msa1096130:intron | 10.0% |
| !! | AAAAATATTAAAAATGTTGT+GGG | + | chr7_3:19974743-19974762 | Msa1096130:intron | 10.0% |
| !!! | ATAATATTTTGAAAACAAGA+TGG | - | chr7_3:19973630-19973649 | None:intergenic | 15.0% |
| !!! | AGGGAATTTTTTTTTTTTAA+AGG | - | chr7_3:19973963-19973982 | None:intergenic | 15.0% |
| !!! | TTCTTTTATGAGATAAATTT+AGG | + | chr7_3:19974135-19974154 | Msa1096130:intron | 15.0% |
| !!! | TCTTTTATGAGATAAATTTA+GGG | + | chr7_3:19974136-19974155 | Msa1096130:intron | 15.0% |
| !! | AAATAAAAAAAAATTAGCGA+CGG | - | chr7_3:19974178-19974197 | None:intergenic | 15.0% |
| !! | AAGTTAAAATGATTTATGTA+TGG | + | chr7_3:19974301-19974320 | Msa1096130:intron | 15.0% |
| !! | AGTTAAAATGATTTATGTAT+GGG | + | chr7_3:19974302-19974321 | Msa1096130:intron | 15.0% |
| !!! | GAAACAAATTTTAATTACTA+AGG | - | chr7_3:19974386-19974405 | None:intergenic | 15.0% |
| !! | TGAATAATTGAAAAATGTAT+CGG | - | chr7_3:19974930-19974949 | None:intergenic | 15.0% |
| !!! | TCTTCTATTTGTATTTTATA+TGG | + | chr7_3:19974985-19975004 | Msa1096130:intron | 15.0% |
| !! | AATATATTAATCTATTGCAT+GGG | + | chr7_3:19975044-19975063 | Msa1096130:intron | 15.0% |
| !! | TCAAAAAAATATATGTACAA+TGG | - | chr7_3:19975083-19975102 | None:intergenic | 15.0% |
| !! | TTATTATTTCCAATAATCAA+GGG | + | chr7_3:19975322-19975341 | Msa1096130:intron | 15.0% |
| !! | TACATTCATATGGTATAAAA+AGG | + | chr7_3:19973346-19973365 | Msa1096130:intron | 20.0% |
| !! | ACATTCATATGGTATAAAAA+GGG | + | chr7_3:19973347-19973366 | Msa1096130:intron | 20.0% |
| !! | AAAACAAATAGTACAGAAAA+AGG | - | chr7_3:19973397-19973416 | None:intergenic | 20.0% |
| !! | TGTTGGCATAAAATTAAATT+AGG | + | chr7_3:19973457-19973476 | Msa1096130:intron | 20.0% |
| !! | AAAATATTATACACACACAT+GGG | + | chr7_3:19973640-19973659 | Msa1096130:intron | 20.0% |
| !! | TGTTTGAATAATAAGAGATA+TGG | + | chr7_3:19973732-19973751 | Msa1096130:intron | 20.0% |
| !! | AAAAAAAAAAATTCCCTCAA+AGG | + | chr7_3:19973966-19973985 | Msa1096130:intron | 20.0% |
| !! | AATAAAAAAAAATTAGCGAC+GGG | - | chr7_3:19974177-19974196 | None:intergenic | 20.0% |
| !! | GTTATGTTTGTCTTTAAATT+AGG | - | chr7_3:19974502-19974521 | None:intergenic | 20.0% |
| !! | TTACTATGAAATATTAGACT+TGG | + | chr7_3:19974558-19974577 | Msa1096130:intron | 20.0% |
| !!! | GAAAAGTTTTTAGAATCAAT+AGG | - | chr7_3:19974673-19974692 | None:intergenic | 20.0% |
| !!! | TATATTAGTTTTTCGTGTTT+TGG | - | chr7_3:19974868-19974887 | None:intergenic | 20.0% |
| !! | GAATAATTGAAAAATGTATC+GGG | - | chr7_3:19974929-19974948 | None:intergenic | 20.0% |
| !!! | ATTATTACTTTTTCTCTCAT+TGG | + | chr7_3:19974949-19974968 | Msa1096130:intron | 20.0% |
| !! | GAATATATTAATCTATTGCA+TGG | + | chr7_3:19975043-19975062 | Msa1096130:intron | 20.0% |
| !! | ATTCTGCAATTTAGTATTAA+AGG | - | chr7_3:19975174-19975193 | None:intergenic | 20.0% |
| !! | CTTATTATTTCCAATAATCA+AGG | + | chr7_3:19975321-19975340 | Msa1096130:intron | 20.0% |
| ! | ATGAAAAATAGTATGAAGCT+AGG | - | chr7_3:19973231-19973250 | None:intergenic | 25.0% |
| !! | TGAATTTTCTTAGTGAACTT+AGG | - | chr7_3:19973273-19973292 | None:intergenic | 25.0% |
| ! | ATGCTTATTAGTTATCTTCA+TGG | + | chr7_3:19973423-19973442 | Msa1096130:intron | 25.0% |
| ! | CAAAATATTATACACACACA+TGG | + | chr7_3:19973639-19973658 | Msa1096130:intron | 25.0% |
| ! | TTATACCTAGTTAGTTATCA+TGG | + | chr7_3:19973779-19973798 | Msa1096130:intron | 25.0% |
| ! | TAAAACCATGATAACTAACT+AGG | - | chr7_3:19973787-19973806 | None:intergenic | 25.0% |
| !! | TTAAATTCCTTTTGTGATCA+CGG | + | chr7_3:19973804-19973823 | Msa1096130:intron | 25.0% |
| !! | CTTTTCATACCATATATAAG+TGG | + | chr7_3:19973893-19973912 | Msa1096130:intron | 25.0% |
| ! | CAAAGTTAACCACTTATATA+TGG | - | chr7_3:19973905-19973924 | None:intergenic | 25.0% |
| ! | AAACTAATTAAAACCCTCAA+AGG | + | chr7_3:19973932-19973951 | Msa1096130:intron | 25.0% |
| !! | TGTTTTGTGATATAAGTTCA+AGG | + | chr7_3:19974418-19974437 | Msa1096130:intron | 25.0% |
| !! | TATGAAATATTAGACTTGGT+AGG | + | chr7_3:19974562-19974581 | Msa1096130:intron | 25.0% |
| !! | ATGAAATATTAGACTTGGTA+GGG | + | chr7_3:19974563-19974582 | Msa1096130:intron | 25.0% |
| ! | TCTTTCTTTGTGCATAATTA+GGG | - | chr7_3:19974598-19974617 | None:intergenic | 25.0% |
| ! | ACTAAAGAATAAAGAAGTTG+AGG | + | chr7_3:19974824-19974843 | Msa1096130:intron | 25.0% |
| !! | AGCAAAGATTATTTGAGTTT+AGG | + | chr7_3:19975226-19975245 | Msa1096130:intron | 25.0% |
| !! | GCAAAGATTATTTGAGTTTA+GGG | + | chr7_3:19975227-19975246 | Msa1096130:intron | 25.0% |
| ! | GTGTATATATGCTTTATGTT+TGG | - | chr7_3:19975421-19975440 | None:intergenic | 25.0% |
| ! | ACATAAAATAATGTGCAGTT+TGG | + | chr7_3:19975505-19975524 | Msa1096130:intron | 25.0% |
| !!! | AGAGAACAAAGAATTTTTTG+AGG | + | chr7_3:19975542-19975561 | Msa1096130:CDS | 25.0% |
| !!! | GCTAATTAATTTTTAGTCGT+TGG | - | chr7_3:19975664-19975683 | None:intergenic | 25.0% |
| !! | ATAGAAAAGCCTAGTAATTT+TGG | - | chr7_3:19975741-19975760 | None:intergenic | 25.0% |
| ! | TAGTTGCATAACTTTATATG+TGG | + | chr7_3:19975812-19975831 | Msa1096130:three_prime_UTR | 25.0% |
| ! | ATATATGCATGCAATACATA+GGG | - | chr7_3:19975839-19975858 | None:intergenic | 25.0% |
| ! | TATATATGCATGCAATACAT+AGG | - | chr7_3:19975840-19975859 | None:intergenic | 25.0% |
| ! | ATGTATTGCATGCATATATA+TGG | + | chr7_3:19975840-19975859 | Msa1096130:three_prime_UTR | 25.0% |
| GATTTGACATATGCAACATA+AGG | - | chr7_3:19973199-19973218 | None:intergenic | 30.0% | |
| AGAAAATTCATTGCTAGTGT+TGG | + | chr7_3:19973283-19973302 | Msa1096130:five_prime_UTR | 30.0% | |
| GAAAATTCATTGCTAGTGTT+GGG | + | chr7_3:19973284-19973303 | Msa1096130:five_prime_UTR | 30.0% | |
| TTCTGCTTCATACATTCATA+TGG | + | chr7_3:19973336-19973355 | Msa1096130:CDS | 30.0% | |
| TTTGATCTTTCACATGACAA+AGG | + | chr7_3:19973502-19973521 | Msa1096130:CDS | 30.0% | |
| TAGAAGTAGATATATACCAG+TGG | - | chr7_3:19973582-19973601 | None:intergenic | 30.0% | |
| !! | ATTTTGAAAACAAGATGGCT+TGG | - | chr7_3:19973625-19973644 | None:intergenic | 30.0% |
| ! | CAATTTTGCATGACATGAAA+TGG | - | chr7_3:19973676-19973695 | None:intergenic | 30.0% |
| ! | GAAAAGTATACATACTAGCA+TGG | - | chr7_3:19973879-19973898 | None:intergenic | 30.0% |
| TTTAAAGGACAAACCTTTGA+GGG | - | chr7_3:19973948-19973967 | None:intergenic | 30.0% | |
| !! | TTTTAAAGGACAAACCTTTG+AGG | - | chr7_3:19973949-19973968 | None:intergenic | 30.0% |
| ATGTATTGGAAGTTTACCAA+GGG | + | chr7_3:19973996-19974015 | Msa1096130:intron | 30.0% | |
| TCATCATGTGTAAATTAGAG+TGG | - | chr7_3:19974109-19974128 | None:intergenic | 30.0% | |
| ! | GTAATTCTCCATGTCAATTT+TGG | + | chr7_3:19974229-19974248 | Msa1096130:intron | 30.0% |
| ! | TGAAATATTAGACTTGGTAG+GGG | + | chr7_3:19974564-19974583 | Msa1096130:intron | 30.0% |
| CTTTCTTTGTGCATAATTAG+GGG | - | chr7_3:19974597-19974616 | None:intergenic | 30.0% | |
| CTCTTTCTTTGTGCATAATT+AGG | - | chr7_3:19974599-19974618 | None:intergenic | 30.0% | |
| TGCACAAAGAAAGAGTTTAA+TGG | + | chr7_3:19974604-19974623 | Msa1096130:intron | 30.0% | |
| ACAAAGAAAGAGTTTAATGG+TGG | + | chr7_3:19974607-19974626 | Msa1096130:intron | 30.0% | |
| !! | AGTTTTTCGTGTTTTGGATA+GGG | - | chr7_3:19974862-19974881 | None:intergenic | 30.0% |
| !! | TAGTTTTTCGTGTTTTGGAT+AGG | - | chr7_3:19974863-19974882 | None:intergenic | 30.0% |
| ATCGGGTAAAAAAAGTTGAA+TGG | - | chr7_3:19974912-19974931 | None:intergenic | 30.0% | |
| CTGCAATTTAGTATTAAAGG+CGG | - | chr7_3:19975171-19975190 | None:intergenic | 30.0% | |
| ! | CATTCTTTTCCCTTGATTAT+TGG | - | chr7_3:19975334-19975353 | None:intergenic | 30.0% |
| TAATCAAGGGAAAAGAATGA+AGG | + | chr7_3:19975335-19975354 | Msa1096130:intron | 30.0% | |
| TTTAATGTACGGATGTAATG+TGG | - | chr7_3:19975474-19975493 | None:intergenic | 30.0% | |
| AAAATAATGTGCAGTTTGGA+AGG | + | chr7_3:19975509-19975528 | Msa1096130:intron | 30.0% | |
| ! | TGAGAATAGATCGTTTTCAA+GGG | - | chr7_3:19975687-19975706 | None:intergenic | 30.0% |
| ! | ATGAGAATAGATCGTTTTCA+AGG | - | chr7_3:19975688-19975707 | None:intergenic | 30.0% |
| GCAAATCTGATCATTGTTAT+GGG | - | chr7_3:19975939-19975958 | None:intergenic | 30.0% | |
| TGCAAATCTGATCATTGTTA+TGG | - | chr7_3:19975940-19975959 | None:intergenic | 30.0% | |
| GTACAGAAAAAGGAGAGAAA+AGG | - | chr7_3:19973387-19973406 | None:intergenic | 35.0% | |
| ! | ACTAGCATGGTTTTCAATTG+AGG | - | chr7_3:19973866-19973885 | None:intergenic | 35.0% |
| ATACATGATCAAGCCTTTGA+GGG | - | chr7_3:19973982-19974001 | None:intergenic | 35.0% | |
| AATACATGATCAAGCCTTTG+AGG | - | chr7_3:19973983-19974002 | None:intergenic | 35.0% | |
| TCAAAGGCTTGATCATGTAT+TGG | + | chr7_3:19973982-19974001 | Msa1096130:intron | 35.0% | |
| CATGTATTGGAAGTTTACCA+AGG | + | chr7_3:19973995-19974014 | Msa1096130:intron | 35.0% | |
| !! | GTCTTTAGAATCTCTTACTC+AGG | + | chr7_3:19974021-19974040 | Msa1096130:intron | 35.0% |
| ! | ATTCTCCATGTCAATTTTGG+TGG | + | chr7_3:19974232-19974251 | Msa1096130:intron | 35.0% |
| !! | TTCTCCATGTCAATTTTGGT+GGG | + | chr7_3:19974233-19974252 | Msa1096130:intron | 35.0% |
| GAATAAAGAAGTTGAGGTCT+TGG | + | chr7_3:19974830-19974849 | Msa1096130:intron | 35.0% | |
| GATATGATATCTTCCACACA+AGG | + | chr7_3:19975391-19975410 | Msa1096130:intron | 35.0% | |
| TATGTTTGGATTTCCTTGTG+TGG | - | chr7_3:19975407-19975426 | None:intergenic | 35.0% | |
| ! | AGATGATTTTCTGTAGCATC+TGG | - | chr7_3:19975620-19975639 | None:intergenic | 35.0% |
| !! | GAGAATAGATCGTTTTCAAG+GGG | - | chr7_3:19975686-19975705 | None:intergenic | 35.0% |
| TGCAACAAGCCAAAATTACT+AGG | + | chr7_3:19975729-19975748 | Msa1096130:three_prime_UTR | 35.0% | |
| CAACTAGTGACATATTACAC+TGG | - | chr7_3:19975798-19975817 | None:intergenic | 35.0% | |
| GATCATTGTTATGGGATAGA+TGG | - | chr7_3:19975931-19975950 | None:intergenic | 35.0% | |
| ! | ATTGCTAGTGTTGGGATCAT+GGG | + | chr7_3:19973292-19973311 | Msa1096130:exon | 40.0% |
| GCAGAAGAAGAAGAAGAAGA+AGG | - | chr7_3:19973322-19973341 | None:intergenic | 40.0% | |
| ! | TCATGGCTTTTGACATGTGT+TGG | + | chr7_3:19973440-19973459 | Msa1096130:intron | 40.0% |
| CATGACAAAGGAAGAATGCA+TGG | + | chr7_3:19973514-19973533 | Msa1096130:CDS | 40.0% | |
| ATACCAGTGGAAGTTATGAC+AGG | - | chr7_3:19973569-19973588 | None:intergenic | 40.0% | |
| ATTGCAACCGTGATCACAAA+AGG | - | chr7_3:19973814-19973833 | None:intergenic | 40.0% | |
| ! | GAGATTCTAAAGACATCCCT+TGG | - | chr7_3:19974015-19974034 | None:intergenic | 40.0% |
| TCTCTTACTCAGGAATCTCA+TGG | + | chr7_3:19974031-19974050 | Msa1096130:intron | 40.0% | |
| TTAGCCCACCAAAATTGACA+TGG | - | chr7_3:19974240-19974259 | None:intergenic | 40.0% | |
| ! | AATATTAGACTTGGTAGGGG+TGG | + | chr7_3:19974567-19974586 | Msa1096130:intron | 40.0% |
| ! | ATATTAGACTTGGTAGGGGT+GGG | + | chr7_3:19974568-19974587 | Msa1096130:intron | 40.0% |
| GTTGATCTACACATCTCTGT+CGG | - | chr7_3:19974796-19974815 | None:intergenic | 40.0% | |
| ATCATCTCAGATTCCTCCAA+AGG | + | chr7_3:19975633-19975652 | Msa1096130:CDS | 40.0% | |
| ! | TTAGTCGTTGGTTGAACCTT+TGG | - | chr7_3:19975652-19975671 | None:intergenic | 40.0% |
| ! | CATTGCTAGTGTTGGGATCA+TGG | + | chr7_3:19973291-19973310 | Msa1096130:exon | 45.0% |
| AAGCCTGTCATAACTTCCAC+TGG | + | chr7_3:19973563-19973582 | Msa1096130:CDS | 45.0% | |
| ! | CATCTGGTTTGTCTCTTCCT+CGG | - | chr7_3:19975604-19975623 | None:intergenic | 45.0% |
| !!! | ATAAATTTTTATTTAATGTA+CGG | - | chr7_3:19975485-19975504 | None:intergenic | 5.0% |
| !!! | ATTTTTTGAATAAATATATA+TGG | + | chr7_3:19975868-19975887 | Msa1096130:three_prime_UTR | 5.0% |
| ATGTGCAGTTTGGAAGGAGC+TGG | + | chr7_3:19975515-19975534 | Msa1096130:intron | 50.0% | |
| TAAAGACGAGCGAATGTCCG+AGG | + | chr7_3:19975584-19975603 | Msa1096130:CDS | 50.0% | |
| ! | GTCGTTGGTTGAACCTTTGG+AGG | - | chr7_3:19975649-19975668 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 19973186 | 19975968 | 19973186 | ID=Msa1096130;Name=Msa1096130 |
| chr7_3 | mRNA | 19973186 | 19975968 | 19973186 | ID=Msa1096130-mRNA-1;Parent=Msa1096130;Name=Msa1096130-mRNA-1;_AED=0.03;_eAED=0.03;_QI=124|1|1|1|1|1|3|297|100 |
| chr7_3 | exon | 19973186 | 19973357 | 19973186 | ID=Msa1096130-mRNA-1:exon:4284;Parent=Msa1096130-mRNA-1 |
| chr7_3 | exon | 19973479 | 19973584 | 19973479 | ID=Msa1096130-mRNA-1:exon:4285;Parent=Msa1096130-mRNA-1 |
| chr7_3 | exon | 19975523 | 19975968 | 19975523 | ID=Msa1096130-mRNA-1:exon:4286;Parent=Msa1096130-mRNA-1 |
| chr7_3 | five_prime_UTR | 19973186 | 19973309 | 19973186 | ID=Msa1096130-mRNA-1:five_prime_utr;Parent=Msa1096130-mRNA-1 |
| chr7_3 | CDS | 19973310 | 19973357 | 19973310 | ID=Msa1096130-mRNA-1:cds;Parent=Msa1096130-mRNA-1 |
| chr7_3 | CDS | 19973479 | 19973584 | 19973479 | ID=Msa1096130-mRNA-1:cds;Parent=Msa1096130-mRNA-1 |
| chr7_3 | CDS | 19975523 | 19975671 | 19975523 | ID=Msa1096130-mRNA-1:cds;Parent=Msa1096130-mRNA-1 |
| chr7_3 | three_prime_UTR | 19975672 | 19975968 | 19975672 | ID=Msa1096130-mRNA-1:three_prime_utr;Parent=Msa1096130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
