Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014290 | XP_024631053.1 | 77.647 | 85 | 11 | 1 | 80 | 164 | 220 | 296 | 1.48e-33 | 132 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014290 | sp|Q9SZ53|P2C60_ARATH | 34.868 | 152 | 85 | 3 | 13 | 159 | 149 | 291 | 1.57e-23 | 97.8 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014290 | G7I891 | 77.647 | 85 | 11 | 1 | 80 | 164 | 220 | 296 | 7.07e-34 | 132 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110270 | Msa1014290 | 0.803015 | 4.264477e-49 | -8.615850e-47 |
| Msa0810540 | Msa1014290 | 0.872311 | 3.504786e-67 | -8.615850e-47 |
| Msa0349540 | Msa1014290 | 0.917703 | 3.842506e-86 | -8.615850e-47 |
| Msa0943920 | Msa1014290 | 0.910323 | 2.130524e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014290 | MtrunA17_Chr1g0150071 | 77.647 | 85 | 11 | 1 | 80 | 164 | 220 | 296 | 1.36e-37 | 132 |
| Msa1014290 | MtrunA17_Chr3g0136811 | 41.497 | 147 | 71 | 3 | 23 | 164 | 160 | 296 | 5.71e-28 | 107 |
| Msa1014290 | MtrunA17_Chr4g0001761 | 40.000 | 125 | 62 | 2 | 40 | 159 | 175 | 291 | 2.44e-23 | 94.4 |
| Msa1014290 | MtrunA17_Chr4g0068971 | 50.000 | 60 | 27 | 1 | 100 | 159 | 142 | 198 | 4.48e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1014290 | AT4G31860.3 | 34.868 | 152 | 85 | 3 | 13 | 159 | 149 | 291 | 1.07e-24 | 97.4 |
| Msa1014290 | AT4G31860.1 | 34.868 | 152 | 85 | 3 | 13 | 159 | 149 | 291 | 1.60e-24 | 97.8 |
| Msa1014290 | AT2G25070.1 | 39.200 | 125 | 63 | 2 | 40 | 159 | 175 | 291 | 3.11e-24 | 97.1 |
| Msa1014290 | AT2G25070.2 | 39.200 | 125 | 63 | 2 | 40 | 159 | 175 | 291 | 3.11e-24 | 97.1 |
| Msa1014290 | AT4G31860.2 | 31.618 | 136 | 79 | 3 | 13 | 143 | 149 | 275 | 9.10e-16 | 73.2 |
Find 46 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGTGGATTTAGGGATTT+AGG | 0.163769 | 7_1:+22730215 | Msa1014290:intron |
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 7_1:-22732002 | None:intergenic |
| AATCACACATGATGAGAATA+TGG | 0.255671 | 7_1:-22730002 | None:intergenic |
| TATTGTAGCATGCGTATAAA+AGG | 0.301654 | 7_1:+22731408 | Msa1014290:intron |
| ATTCATAGATTTCCAAATCT+AGG | 0.310532 | 7_1:+22730056 | Msa1014290:five_prime_UTR |
| GTTGTGGATTTAGGGATTTA+GGG | 0.310610 | 7_1:+22730216 | Msa1014290:intron |
| AGCGAATGAGCCTGTGTTAT+TGG | 0.325490 | 7_1:+22730529 | Msa1014290:CDS |
| TTATTGGAGCTACTTACTTC+AGG | 0.327624 | 7_1:+22730545 | Msa1014290:CDS |
| AGCATACAAAATAAAATAAT+AGG | 0.344397 | 7_1:-22731437 | None:intergenic |
| CAAATCGCAAACCCTAGATT+TGG | 0.352524 | 7_1:-22730068 | None:intergenic |
| TCTCATCATGTGTGATTCTT+CGG | 0.380290 | 7_1:+22730008 | Msa1014290:five_prime_UTR |
| AAACACCCAACTCTCTCTTC+AGG | 0.402117 | 7_1:+22729874 | Msa1014290:five_prime_UTR |
| TAGTTTGTTTCTTCTTACTA+AGG | 0.408341 | 7_1:+22730995 | Msa1014290:CDS |
| AGAACGCAGTGAAGAAAGTT+TGG | 0.413786 | 7_1:-22729927 | None:intergenic |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 7_1:-22731695 | None:intergenic |
| TGATAGCTTGTGATGGCATT+TGG | 0.432620 | 7_1:+22731892 | Msa1014290:CDS |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 7_1:-22732011 | None:intergenic |
| CAAGGTGCGGCGCGGCTTGG+TGG | 0.435426 | 7_1:-22729957 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 7_1:-22731690 | None:intergenic |
| TTCATAGATTTCCAAATCTA+GGG | 0.460410 | 7_1:+22730057 | Msa1014290:five_prime_UTR |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 7_1:-22731687 | None:intergenic |
| GGTGAAAATGACAAGCTTAG+TGG | 0.466223 | 7_1:+22730473 | Msa1014290:intron |
| AATCAAGGTGCGGCGCGGCT+TGG | 0.467007 | 7_1:-22729960 | None:intergenic |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 7_1:+22731999 | Msa1014290:CDS |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 7_1:+22732029 | Msa1014290:CDS |
| TGAAACCTGAAGAGAGAGTT+GGG | 0.512764 | 7_1:-22729879 | None:intergenic |
| AGAATATGGGAGGTGGAAGG+TGG | 0.519905 | 7_1:-22729988 | None:intergenic |
| AATTTACTCTTTGACCATGT+CGG | 0.545750 | 7_1:-22730128 | None:intergenic |
| GTGAAACCTGAAGAGAGAGT+TGG | 0.557300 | 7_1:-22729880 | None:intergenic |
| ATCACACATGATGAGAATAT+GGG | 0.558010 | 7_1:-22730001 | None:intergenic |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 7_1:-22731866 | None:intergenic |
| TGGAAGGTGGAATCGAATCA+AGG | 0.565625 | 7_1:-22729975 | None:intergenic |
| GACAAGCTTAGTGGAGAGGA+GGG | 0.575209 | 7_1:+22730482 | Msa1014290:CDS |
| CATGATGAGAATATGGGAGG+TGG | 0.581095 | 7_1:-22729995 | None:intergenic |
| TTAATATTCTGCAGGTGACG+TGG | 0.584418 | 7_1:+22731619 | Msa1014290:intron |
| TGACAAGCTTAGTGGAGAGG+AGG | 0.594113 | 7_1:+22730481 | Msa1014290:CDS |
| ATTCGCTACACCTACAACCA+TGG | 0.597019 | 7_1:-22730513 | None:intergenic |
| TACAAAATAAAATAATAGGA+AGG | 0.603610 | 7_1:-22731433 | None:intergenic |
| AGATCTACACGAAGCCGACA+TGG | 0.608260 | 7_1:+22730114 | Msa1014290:exon |
| ATGAGAATATGGGAGGTGGA+AGG | 0.616055 | 7_1:-22729991 | None:intergenic |
| GTAAGTAGCTCCAATAACAC+AGG | 0.642874 | 7_1:-22730539 | None:intergenic |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 7_1:+22731885 | Msa1014290:CDS |
| AAATGACAAGCTTAGTGGAG+AGG | 0.658116 | 7_1:+22730478 | Msa1014290:CDS |
| ACACATGATGAGAATATGGG+AGG | 0.701326 | 7_1:-22729998 | None:intergenic |
| AATCGAATCAAGGTGCGGCG+CGG | 0.713820 | 7_1:-22729965 | None:intergenic |
| GGTGGAATCGAATCAAGGTG+CGG | 0.715767 | 7_1:-22729970 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACAAAAACAAATTAAA+GGG | - | chr7_1:22730940-22730959 | None:intergenic | 10.0% |
| !! | AATTAACAAAAACAAATTAA+AGG | - | chr7_1:22730941-22730960 | None:intergenic | 10.0% |
| !! | GAATATTAAAACATATTAAA+TGG | - | chr7_1:22731608-22731627 | None:intergenic | 10.0% |
| !! | AAATGACATTTAATTAAAAT+GGG | - | chr7_1:22731948-22731967 | None:intergenic | 10.0% |
| !!! | TTAACTGTTACTTAAATTTT+TGG | + | chr7_1:22730438-22730457 | Msa1014290:intron | 15.0% |
| !! | AAAATATAGAAATCTACTTT+GGG | - | chr7_1:22730731-22730750 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTAATTTTGT+TGG | + | chr7_1:22730945-22730964 | Msa1014290:intron | 15.0% |
| !!! | TTGTTTTTGTTAATTTTGTT+GGG | + | chr7_1:22730946-22730965 | Msa1014290:intron | 15.0% |
| !!! | ATATTTTCAAAGAAATTAGT+CGG | - | chr7_1:22731105-22731124 | None:intergenic | 15.0% |
| !!! | AATTTCTTTGAAAATATTGA+TGG | + | chr7_1:22731108-22731127 | Msa1014290:intron | 15.0% |
| !! | TACAAAATAAAATAATAGGA+AGG | - | chr7_1:22731436-22731455 | None:intergenic | 15.0% |
| !! | AGCATACAAAATAAAATAAT+AGG | - | chr7_1:22731440-22731459 | None:intergenic | 15.0% |
| !!! | TTATTTTGTATGCTTTATTT+TGG | + | chr7_1:22731446-22731465 | Msa1014290:CDS | 15.0% |
| !! | AATGACATTTAATTAAAATG+GGG | - | chr7_1:22731947-22731966 | None:intergenic | 15.0% |
| !! | GAAATGACATTTAATTAAAA+TGG | - | chr7_1:22731949-22731968 | None:intergenic | 15.0% |
| !!! | AATTTTTGGAAAATTTGTGA+AGG | + | chr7_1:22730452-22730471 | Msa1014290:intron | 20.0% |
| !! | GAAAATATAGAAATCTACTT+TGG | - | chr7_1:22730732-22730751 | None:intergenic | 20.0% |
| !! | CTATTATTATAAAGTCATAG+AGG | - | chr7_1:22730758-22730777 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTGCTTTGTA+GGG | + | chr7_1:22730787-22730806 | Msa1014290:intron | 20.0% |
| !! | AAAAACAAATTAAAGGGTTA+CGG | - | chr7_1:22730934-22730953 | None:intergenic | 20.0% |
| !! | TAGTTACTATTAATAAAGCA+AGG | - | chr7_1:22731190-22731209 | None:intergenic | 20.0% |
| !! | ATAATAGAATTTCAACATCA+TGG | + | chr7_1:22731237-22731256 | Msa1014290:intron | 20.0% |
| !!! | AATATGTTTTAATATTCTGC+AGG | + | chr7_1:22731611-22731630 | Msa1014290:intron | 20.0% |
| !! | ATATTGTCTATTGAGAAATA+GGG | - | chr7_1:22731742-22731761 | None:intergenic | 20.0% |
| !!! | TGTTTTTGGAATTATATCAT+AGG | + | chr7_1:22731839-22731858 | Msa1014290:intron | 20.0% |
| !! | CTTGTATATGAAATGTTATT+TGG | + | chr7_1:22732151-22732170 | Msa1014290:intron | 20.0% |
| !! | TTATTTGGACTTACATAATT+TGG | + | chr7_1:22732166-22732185 | Msa1014290:intron | 20.0% |
| ! | ATTCATAGATTTCCAAATCT+AGG | + | chr7_1:22730056-22730075 | Msa1014290:five_prime_UTR | 25.0% |
| ! | TTCATAGATTTCCAAATCTA+GGG | + | chr7_1:22730057-22730076 | Msa1014290:five_prime_UTR | 25.0% |
| ! | AATCAAATAAGAGGATGAAA+AGG | - | chr7_1:22730155-22730174 | None:intergenic | 25.0% |
| ! | AAATCACGAAATCAAATAAG+AGG | - | chr7_1:22730164-22730183 | None:intergenic | 25.0% |
| !! | TCTACGTTTGATTCAATTTT+AGG | + | chr7_1:22730582-22730601 | Msa1014290:intron | 25.0% |
| ! | TGTAAAACAACAACATTGAA+AGG | - | chr7_1:22730637-22730656 | None:intergenic | 25.0% |
| ! | TATTATAAAGTCATAGAGGA+AGG | - | chr7_1:22730754-22730773 | None:intergenic | 25.0% |
| !!! | CTTTTATTTACTTGCTTTGT+AGG | + | chr7_1:22730786-22730805 | Msa1014290:intron | 25.0% |
| !!! | TAGTTTGTTTCTTCTTACTA+AGG | + | chr7_1:22730995-22731014 | Msa1014290:CDS | 25.0% |
| ! | ATAGCTTAATACACAAGTAA+TGG | - | chr7_1:22731213-22731232 | None:intergenic | 25.0% |
| !!! | TTTTGTATGCTTTATTTTGG+AGG | + | chr7_1:22731449-22731468 | Msa1014290:CDS | 25.0% |
| ! | GGAAACAATATAAACCATAT+AGG | - | chr7_1:22731587-22731606 | None:intergenic | 25.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | - | chr7_1:22731698-22731717 | None:intergenic | 25.0% |
| ! | CATATTGTCTATTGAGAAAT+AGG | - | chr7_1:22731743-22731762 | None:intergenic | 25.0% |
| !! | CTATTTCTCAATAGACAATA+TGG | + | chr7_1:22731741-22731760 | Msa1014290:intron | 25.0% |
| ! | TTAATTAAAATGGGGAATTG+TGG | - | chr7_1:22731939-22731958 | None:intergenic | 25.0% |
| !! | AATTCTTTTTCTTACGTTTC+AGG | + | chr7_1:22731974-22731993 | Msa1014290:intron | 25.0% |
| !! | ATTCTTTTTCTTACGTTTCA+GGG | + | chr7_1:22731975-22731994 | Msa1014290:intron | 25.0% |
| ATCACACATGATGAGAATAT+GGG | - | chr7_1:22730004-22730023 | None:intergenic | 30.0% | |
| AATCACACATGATGAGAATA+TGG | - | chr7_1:22730005-22730024 | None:intergenic | 30.0% | |
| AATTTACTCTTTGACCATGT+CGG | - | chr7_1:22730131-22730150 | None:intergenic | 30.0% | |
| TAGTTTCTGTTGTGGATTTA+GGG | + | chr7_1:22730208-22730227 | Msa1014290:intron | 30.0% | |
| ! | ATTCAATTTTAGGCCACTAA+AGG | + | chr7_1:22730592-22730611 | Msa1014290:intron | 30.0% |
| !!! | GTTGTTGTTTTACATGAAGA+TGG | + | chr7_1:22730643-22730662 | Msa1014290:intron | 30.0% |
| TTGCACAAACTAGATATGAT+AGG | - | chr7_1:22730697-22730716 | None:intergenic | 30.0% | |
| CAATAATTGCTTAGCTACAA+GGG | + | chr7_1:22731027-22731046 | Msa1014290:intron | 30.0% | |
| GTCATTAGATGATAGAATGA+CGG | + | chr7_1:22731074-22731093 | Msa1014290:intron | 30.0% | |
| TTTCAACATCATGGTCTAAT+AGG | + | chr7_1:22731246-22731265 | Msa1014290:intron | 30.0% | |
| TATTGTAGCATGCGTATAAA+AGG | + | chr7_1:22731408-22731427 | Msa1014290:intron | 30.0% | |
| ATACTTGTATGCATGTTGTT+TGG | + | chr7_1:22731483-22731502 | Msa1014290:intron | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | - | chr7_1:22731693-22731712 | None:intergenic | 30.0% | |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | + | chr7_1:22731825-22731844 | Msa1014290:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | + | chr7_1:22731885-22731904 | Msa1014290:CDS | 30.0% |
| GTACAAAATCTACCAATTGT+TGG | - | chr7_1:22732014-22732033 | None:intergenic | 30.0% | |
| TTCATATACAAGACAGTACT+AGG | - | chr7_1:22732143-22732162 | None:intergenic | 30.0% | |
| TCTCATCATGTGTGATTCTT+CGG | + | chr7_1:22730008-22730027 | Msa1014290:five_prime_UTR | 35.0% | |
| TCATTCTGTAGTTTCTGTTG+TGG | + | chr7_1:22730200-22730219 | Msa1014290:intron | 35.0% | |
| GTAGTTTCTGTTGTGGATTT+AGG | + | chr7_1:22730207-22730226 | Msa1014290:intron | 35.0% | |
| TGTTGTGGATTTAGGGATTT+AGG | + | chr7_1:22730215-22730234 | Msa1014290:intron | 35.0% | |
| GTTGTGGATTTAGGGATTTA+GGG | + | chr7_1:22730216-22730235 | Msa1014290:intron | 35.0% | |
| ! | TTAGGGATTTAGGGATTTTG+TGG | + | chr7_1:22730225-22730244 | Msa1014290:intron | 35.0% |
| TTATTGGAGCTACTTACTTC+AGG | + | chr7_1:22730545-22730564 | Msa1014290:CDS | 35.0% | |
| ACATTAACCATGACCTTTAG+TGG | - | chr7_1:22730608-22730627 | None:intergenic | 35.0% | |
| !! | TGTTAATTTTGTTGGGTTGC+CGG | + | chr7_1:22730953-22730972 | Msa1014290:intron | 35.0% |
| CCTTGTAGCTAAGCAATTAT+TGG | - | chr7_1:22731029-22731048 | None:intergenic | 35.0% | |
| CCAATAATTGCTTAGCTACA+AGG | + | chr7_1:22731026-22731045 | Msa1014290:intron | 35.0% | |
| TAGATGATAGAATGACGGTA+TGG | + | chr7_1:22731079-22731098 | Msa1014290:intron | 35.0% | |
| ! | AATGTTTATGTCTGGATTGG+CGG | - | chr7_1:22731690-22731709 | None:intergenic | 35.0% |
| TAAACTCATCTTCGTCATGA+AGG | - | chr7_1:22731869-22731888 | None:intergenic | 35.0% | |
| TGAAACCTGAAGAGAGAGTT+GGG | - | chr7_1:22729882-22729901 | None:intergenic | 40.0% | |
| AGAACGCAGTGAAGAAAGTT+TGG | - | chr7_1:22729930-22729949 | None:intergenic | 40.0% | |
| ACACATGATGAGAATATGGG+AGG | - | chr7_1:22730001-22730020 | None:intergenic | 40.0% | |
| CAAATCGCAAACCCTAGATT+TGG | - | chr7_1:22730071-22730090 | None:intergenic | 40.0% | |
| ! | TTAGGGATTTTGTGGATCTC+AGG | + | chr7_1:22730233-22730252 | Msa1014290:CDS | 40.0% |
| GGTGAAAATGACAAGCTTAG+TGG | + | chr7_1:22730473-22730492 | Msa1014290:intron | 40.0% | |
| AAATGACAAGCTTAGTGGAG+AGG | + | chr7_1:22730478-22730497 | Msa1014290:CDS | 40.0% | |
| GTAAGTAGCTCCAATAACAC+AGG | - | chr7_1:22730542-22730561 | None:intergenic | 40.0% | |
| ! | TTTTAGGCCACTAAAGGTCA+TGG | + | chr7_1:22730598-22730617 | Msa1014290:intron | 40.0% |
| ! | TTTTCATCATCCTACCTCGA+AGG | - | chr7_1:22730853-22730872 | None:intergenic | 40.0% |
| TGATTCTTACGCACTCTTCT+TGG | - | chr7_1:22730880-22730899 | None:intergenic | 40.0% | |
| AGCAAAAACAGATCCTGTAC+CGG | - | chr7_1:22730975-22730994 | None:intergenic | 40.0% | |
| !!! | TGCTTTATTTTGGAGGCAAG+AGG | + | chr7_1:22731456-22731475 | Msa1014290:CDS | 40.0% |
| !!! | TTTATTTTGGAGGCAAGAGG+AGG | + | chr7_1:22731459-22731478 | Msa1014290:CDS | 40.0% |
| GCGAAGAAATTGCACCTATA+TGG | + | chr7_1:22731570-22731589 | Msa1014290:intron | 40.0% | |
| TTAATATTCTGCAGGTGACG+TGG | + | chr7_1:22731619-22731638 | Msa1014290:intron | 40.0% | |
| ! | TAGGGTAATCTGACTTGCAA+TGG | - | chr7_1:22731724-22731743 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATT+TGG | + | chr7_1:22731892-22731911 | Msa1014290:CDS | 40.0% |
| TTGCCTATCAAGCCAACAAT+TGG | + | chr7_1:22731999-22732018 | Msa1014290:CDS | 40.0% | |
| !! | CTACCAATTGTTGGCTTGAT+AGG | - | chr7_1:22732005-22732024 | None:intergenic | 40.0% |
| TGTACGTCAAGAACTTCTCT+TGG | + | chr7_1:22732029-22732048 | Msa1014290:CDS | 40.0% | |
| AAACACCCAACTCTCTCTTC+AGG | + | chr7_1:22729874-22729893 | Msa1014290:five_prime_UTR | 45.0% | |
| GTGAAACCTGAAGAGAGAGT+TGG | - | chr7_1:22729883-22729902 | None:intergenic | 45.0% | |
| TGGAAGGTGGAATCGAATCA+AGG | - | chr7_1:22729978-22729997 | None:intergenic | 45.0% | |
| ATGAGAATATGGGAGGTGGA+AGG | - | chr7_1:22729994-22730013 | None:intergenic | 45.0% | |
| CATGATGAGAATATGGGAGG+TGG | - | chr7_1:22729998-22730017 | None:intergenic | 45.0% | |
| !!! | GGTTTTGTTGCCATGGTTGT+AGG | + | chr7_1:22730503-22730522 | Msa1014290:CDS | 45.0% |
| ATTCGCTACACCTACAACCA+TGG | - | chr7_1:22730516-22730535 | None:intergenic | 45.0% | |
| AGCGAATGAGCCTGTGTTAT+TGG | + | chr7_1:22730529-22730548 | Msa1014290:CDS | 45.0% | |
| TGGAGCTACTTACTTCAGGT+TGG | + | chr7_1:22730549-22730568 | Msa1014290:intron | 45.0% | |
| ! | GAACAGCTCTTTTTCCTTCG+AGG | + | chr7_1:22730836-22730855 | Msa1014290:CDS | 45.0% |
| ! | AGCTCTTTTTCCTTCGAGGT+AGG | + | chr7_1:22730840-22730859 | Msa1014290:intron | 45.0% |
| GCTTGTGATGGCATTTGGTA+TGG | + | chr7_1:22731897-22731916 | Msa1014290:intron | 45.0% | |
| !!! | ATTTATAATTTTTAGATAAT+TGG | + | chr7_1:22730405-22730424 | Msa1014290:intron | 5.0% |
| GGTGGAATCGAATCAAGGTG+CGG | - | chr7_1:22729973-22729992 | None:intergenic | 50.0% | |
| AGAATATGGGAGGTGGAAGG+TGG | - | chr7_1:22729991-22730010 | None:intergenic | 50.0% | |
| AGATCTACACGAAGCCGACA+TGG | + | chr7_1:22730114-22730133 | Msa1014290:exon | 50.0% | |
| TGACAAGCTTAGTGGAGAGG+AGG | + | chr7_1:22730481-22730500 | Msa1014290:CDS | 50.0% | |
| GACAAGCTTAGTGGAGAGGA+GGG | + | chr7_1:22730482-22730501 | Msa1014290:CDS | 50.0% | |
| !!! | AGAGGAGGGTTTTGTTGCCA+TGG | + | chr7_1:22730496-22730515 | Msa1014290:CDS | 50.0% |
| !! | TTTTGTTGGGTTGCCGGTAC+AGG | + | chr7_1:22730959-22730978 | Msa1014290:intron | 50.0% |
| AATCGAATCAAGGTGCGGCG+CGG | - | chr7_1:22729968-22729987 | None:intergenic | 55.0% | |
| AATCAAGGTGCGGCGCGGCT+TGG | - | chr7_1:22729963-22729982 | None:intergenic | 65.0% | |
| ! | CAAGGTGCGGCGCGGCTTGG+TGG | - | chr7_1:22729960-22729979 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 22729873 | 22732224 | 22729873 | ID=Msa1014290;Name=Msa1014290 |
| chr7_1 | mRNA | 22729873 | 22732224 | 22729873 | ID=Msa1014290-mRNA-1;Parent=Msa1014290;Name=Msa1014290-mRNA-1;_AED=0.31;_eAED=0.31;_QI=260|0.4|0.45|0.81|1|1|11|0|170 |
| chr7_1 | exon | 22729873 | 22730143 | 22729873 | ID=Msa1014290-mRNA-1:exon:5310;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22730229 | 22730254 | 22730229 | ID=Msa1014290-mRNA-1:exon:5311;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22730474 | 22730566 | 22730474 | ID=Msa1014290-mRNA-1:exon:5312;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22730808 | 22730857 | 22730808 | ID=Msa1014290-mRNA-1:exon:5313;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22730981 | 22731016 | 22730981 | ID=Msa1014290-mRNA-1:exon:5314;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22731320 | 22731336 | 22731320 | ID=Msa1014290-mRNA-1:exon:5315;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22731416 | 22731480 | 22731416 | ID=Msa1014290-mRNA-1:exon:5316;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22731633 | 22731709 | 22731633 | ID=Msa1014290-mRNA-1:exon:5317;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22731861 | 22731913 | 22731861 | ID=Msa1014290-mRNA-1:exon:5318;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22731996 | 22732050 | 22731996 | ID=Msa1014290-mRNA-1:exon:5319;Parent=Msa1014290-mRNA-1 |
| chr7_1 | exon | 22732195 | 22732224 | 22732195 | ID=Msa1014290-mRNA-1:exon:5320;Parent=Msa1014290-mRNA-1 |
| chr7_1 | five_prime_UTR | 22729873 | 22730132 | 22729873 | ID=Msa1014290-mRNA-1:five_prime_utr;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22730133 | 22730143 | 22730133 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22730229 | 22730254 | 22730229 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22730474 | 22730566 | 22730474 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22730808 | 22730857 | 22730808 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22730981 | 22731016 | 22730981 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22731320 | 22731336 | 22731320 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22731416 | 22731480 | 22731416 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22731633 | 22731709 | 22731633 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22731861 | 22731913 | 22731861 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22731996 | 22732050 | 22731996 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| chr7_1 | CDS | 22732195 | 22732224 | 22732195 | ID=Msa1014290-mRNA-1:cds;Parent=Msa1014290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
