Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943920 | sp|Q67UP9|P2C58_ORYSJ | 52.667 | 150 | 61 | 2 | 43 | 190 | 209 | 350 | 3.34e-49 | 166 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943920 | B7FJL8 | 85.714 | 147 | 13 | 1 | 54 | 200 | 123 | 261 | 3.66e-82 | 254 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0810540 | Msa0943920 | 0.904237 | 1.513055e-79 | -8.615850e-47 |
| Msa0386580 | Msa0943920 | 0.806555 | 7.771055e-50 | -8.615850e-47 |
| Msa0450630 | Msa0943920 | 0.822752 | 2.002091e-53 | -8.615850e-47 |
| Msa0349540 | Msa0943920 | 0.888758 | 4.441687e-73 | -8.615850e-47 |
| Msa0846210 | Msa0943920 | 0.801839 | 7.449518e-49 | -8.615850e-47 |
| Msa0943920 | Msa1014290 | 0.910323 | 2.130524e-82 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943920 | MtrunA17_Chr1g0150071 | 86.395 | 147 | 12 | 1 | 54 | 200 | 220 | 358 | 9.92e-86 | 257 |
| Msa0943920 | MtrunA17_Chr3g0136811 | 51.456 | 206 | 83 | 4 | 2 | 200 | 165 | 360 | 7.79e-62 | 196 |
| Msa0943920 | MtrunA17_Chr4g0001761 | 43.299 | 194 | 96 | 3 | 12 | 200 | 173 | 357 | 1.74e-46 | 156 |
| Msa0943920 | MtrunA17_Chr4g0068971 | 50.000 | 60 | 27 | 1 | 74 | 133 | 142 | 198 | 3.32e-11 | 60.8 |
| Msa0943920 | MtrunA17_Chr5g0407161 | 29.787 | 141 | 88 | 5 | 50 | 187 | 231 | 363 | 3.58e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0943920 | AT4G31860.1 | 42.932 | 191 | 96 | 2 | 14 | 199 | 175 | 357 | 1.88e-49 | 164 |
| Msa0943920 | AT2G25070.1 | 46.988 | 166 | 75 | 2 | 14 | 174 | 175 | 332 | 1.70e-47 | 159 |
| Msa0943920 | AT2G25070.2 | 46.988 | 166 | 75 | 2 | 14 | 174 | 175 | 332 | 1.70e-47 | 159 |
| Msa0943920 | AT4G31860.3 | 38.400 | 125 | 64 | 2 | 14 | 133 | 175 | 291 | 1.03e-23 | 95.9 |
| Msa0943920 | AT4G31860.2 | 34.862 | 109 | 58 | 2 | 14 | 117 | 175 | 275 | 6.78e-15 | 71.6 |
Find 58 sgRNAs with CRISPR-Local
Find 159 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 6_3:+20124802 | None:intergenic |
| CCGGTGTTTGGCGCCATCTT+TGG | 0.229152 | 6_3:-20123978 | Msa0943920:CDS |
| AATCACACATGATGAGAATA+TGG | 0.255671 | 6_3:+20126803 | None:intergenic |
| TTCACAAACTTCAAAGAGTT+TGG | 0.264475 | 6_3:+20124012 | None:intergenic |
| TATTGTAGCATGCGTATAAA+AGG | 0.301654 | 6_3:-20125396 | Msa0943920:intron |
| ATTCATAGATTTCCAAATCT+AGG | 0.310532 | 6_3:-20126749 | Msa0943920:five_prime_UTR |
| AGCGAATGAGCCTGTGTTAT+TGG | 0.325490 | 6_3:-20126266 | Msa0943920:CDS |
| TTATTGGAGCTACTTACTTC+AGG | 0.327624 | 6_3:-20126250 | Msa0943920:intron |
| AGCATACAAAATAAAATAAT+AGG | 0.344397 | 6_3:+20125367 | None:intergenic |
| CAAATCGCAAACCCTAGATT+TGG | 0.352524 | 6_3:+20126737 | None:intergenic |
| CCATCTTTGGTTGTTGGTGA+TGG | 0.365963 | 6_3:-20123965 | Msa0943920:CDS |
| TCTCATCATGTGTGATTCTT+CGG | 0.380290 | 6_3:-20126797 | Msa0943920:five_prime_UTR |
| CAAGGCGCGGCGCGGCTTGG+TGG | 0.386041 | 6_3:+20126848 | None:intergenic |
| AAACACCCAACTCTCTCTTC+AGG | 0.402117 | 6_3:-20126931 | Msa0943920:five_prime_UTR |
| TAGTTTGTTTCTTCTTACTA+AGG | 0.408341 | 6_3:-20125792 | Msa0943920:intron |
| AGAACGCAGTGAAGAAAGTT+TGG | 0.413786 | 6_3:+20126878 | None:intergenic |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 6_3:+20125109 | None:intergenic |
| AATCAAGGCGCGGCGCGGCT+TGG | 0.427775 | 6_3:+20126845 | None:intergenic |
| TGATAGCTTGTGATGGCATT+TGG | 0.432620 | 6_3:-20124912 | Msa0943920:intron |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 6_3:+20124793 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 6_3:+20125114 | None:intergenic |
| CTTCAACTGTTCTCCAATGT+TGG | 0.445319 | 6_3:+20123839 | None:intergenic |
| TTCATAGATTTCCAAATCTA+GGG | 0.460410 | 6_3:-20126748 | Msa0943920:five_prime_UTR |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 6_3:+20125117 | None:intergenic |
| GGTGAAAATGACAAGCTTAG+TGG | 0.466223 | 6_3:-20126322 | Msa0943920:five_prime_UTR |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 6_3:-20124805 | Msa0943920:CDS |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 6_3:-20124775 | Msa0943920:intron |
| TTGGCGCCATCTTTGGTTGT+TGG | 0.483351 | 6_3:-20123971 | Msa0943920:CDS |
| TGATAACATGACAATGATCT+TGG | 0.507507 | 6_3:-20123939 | Msa0943920:CDS |
| AAATTACTCTTTGACGATGT+CGG | 0.509051 | 6_3:+20126677 | None:intergenic |
| AAGAGTGCTAGACCGGTGTT+TGG | 0.509475 | 6_3:-20123990 | Msa0943920:CDS |
| GTCGGTGCACTAGTCTGCAC+TGG | 0.511375 | 6_3:+20123902 | None:intergenic |
| TGAAACCTGAAGAGAGAGTT+GGG | 0.512764 | 6_3:+20126926 | None:intergenic |
| AGAATATGGGAGGTGGAAGG+TGG | 0.519905 | 6_3:+20126817 | None:intergenic |
| CATTGGAGAACAGTTGAAGT+TGG | 0.538789 | 6_3:-20123835 | Msa0943920:exon |
| CCAAAGATGGCGCCAAACAC+CGG | 0.540933 | 6_3:+20123978 | None:intergenic |
| TTTGTGAAAGAGTGCTAGAC+CGG | 0.548769 | 6_3:-20123997 | Msa0943920:CDS |
| AGATGCATCTGAACCAACAT+TGG | 0.550287 | 6_3:-20123852 | Msa0943920:CDS |
| CCATCACCAACAACCAAAGA+TGG | 0.551930 | 6_3:+20123965 | None:intergenic |
| GTGAAACCTGAAGAGAGAGT+TGG | 0.557300 | 6_3:+20126925 | None:intergenic |
| ATCACACATGATGAGAATAT+GGG | 0.558010 | 6_3:+20126804 | None:intergenic |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 6_3:+20124938 | None:intergenic |
| TGGAAGGTGGAATCGAATCA+AGG | 0.559596 | 6_3:+20126830 | None:intergenic |
| GACAAGCTTAGTGGAGAGGA+GGG | 0.575209 | 6_3:-20126313 | Msa0943920:five_prime_UTR |
| TACATGTATGCATTTAGTGT+TGG | 0.575470 | 6_3:+20123798 | None:intergenic |
| CATGATGAGAATATGGGAGG+TGG | 0.581095 | 6_3:+20126810 | None:intergenic |
| GAAGATGATTGTTCTTGAGT+CGG | 0.584415 | 6_3:+20123884 | None:intergenic |
| TTAATATTCTGCAGGTGACG+TGG | 0.584418 | 6_3:-20125185 | Msa0943920:intron |
| TGACAAGCTTAGTGGAGAGG+AGG | 0.594113 | 6_3:-20126314 | Msa0943920:five_prime_UTR |
| TACAAAATAAAATAATAGGA+AGG | 0.603610 | 6_3:+20125371 | None:intergenic |
| GTTTAAATGACGAGACATTG+TGG | 0.607687 | 6_3:-20123756 | Msa0943920:three_prime_UTR |
| ATGAGAATATGGGAGGTGGA+AGG | 0.616055 | 6_3:+20126814 | None:intergenic |
| GTAAGTAGCTCCAATAACAC+AGG | 0.642874 | 6_3:+20126256 | None:intergenic |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 6_3:-20124919 | Msa0943920:CDS |
| AAATGACAAGCTTAGTGGAG+AGG | 0.658116 | 6_3:-20126317 | Msa0943920:five_prime_UTR |
| AATCGAATCAAGGCGCGGCG+CGG | 0.673354 | 6_3:+20126840 | None:intergenic |
| ACACATGATGAGAATATGGG+AGG | 0.701326 | 6_3:+20126807 | None:intergenic |
| GGTGGAATCGAATCAAGGCG+CGG | 0.704926 | 6_3:+20126835 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTAATTTTTAGATACT+TGG | - | chr6_3:20124219-20124238 | Msa0943920:intron | 10.0% |
| !! | ATTAACAAAAACAAATTAAA+GGG | + | chr6_3:20124762-20124781 | None:intergenic | 10.0% |
| !! | AATTAACAAAAACAAATTAA+AGG | + | chr6_3:20124763-20124782 | None:intergenic | 10.0% |
| !! | GAATATTAAAACATATTAAA+TGG | + | chr6_3:20125413-20125432 | None:intergenic | 10.0% |
| !! | AAATGACATTTAATTAAAAT+GGG | + | chr6_3:20125753-20125772 | None:intergenic | 10.0% |
| !!! | TTAACTGTTACTTAAATTTT+TGG | - | chr6_3:20124252-20124271 | Msa0943920:intron | 15.0% |
| !! | AAAATATAGAAATCTACTTT+GGG | + | chr6_3:20124553-20124572 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTAATTTTGT+TGG | - | chr6_3:20124767-20124786 | Msa0943920:intron | 15.0% |
| !!! | TTGTTTTTGTTAATTTTGTT+GGG | - | chr6_3:20124768-20124787 | Msa0943920:intron | 15.0% |
| !!! | ATATTTTCAAAGAAATTAGT+TGG | + | chr6_3:20124911-20124930 | None:intergenic | 15.0% |
| !!! | AATTTCTTTGAAAATATTGA+TGG | - | chr6_3:20124914-20124933 | Msa0943920:CDS | 15.0% |
| !! | ATAATAAAATTTCAACATCA+TGG | - | chr6_3:20125043-20125062 | Msa0943920:intron | 15.0% |
| !! | TACAAAATAAAATAATAGGA+AGG | + | chr6_3:20125241-20125260 | None:intergenic | 15.0% |
| !! | AGCATACAAAATAAAATAAT+AGG | + | chr6_3:20125245-20125264 | None:intergenic | 15.0% |
| !!! | TTATTTTGTATGCTTTATTT+TGG | - | chr6_3:20125251-20125270 | Msa0943920:intron | 15.0% |
| !! | AATGACATTTAATTAAAATG+GGG | + | chr6_3:20125752-20125771 | None:intergenic | 15.0% |
| !! | GAAATGACATTTAATTAAAA+TGG | + | chr6_3:20125754-20125773 | None:intergenic | 15.0% |
| !! | CAAATTTAATAATGACAATT+TGG | + | chr6_3:20126217-20126236 | None:intergenic | 15.0% |
| !! | CAAATTGTCATTATTAAATT+TGG | - | chr6_3:20126215-20126234 | Msa0943920:intron | 15.0% |
| !! | TTTAAAAAATCAAATTGTGA+AGG | - | chr6_3:20126329-20126348 | Msa0943920:intron | 15.0% |
| !!! | AATTTTTGGAAAATTTGTGA+AGG | - | chr6_3:20124266-20124285 | Msa0943920:intron | 20.0% |
| !!! | TCTACATTTGATTCAATTTT+AGG | - | chr6_3:20124396-20124415 | Msa0943920:intron | 20.0% |
| !! | GAAAATATAGAAATCTACTT+TGG | + | chr6_3:20124554-20124573 | None:intergenic | 20.0% |
| !! | CTATTATTATAAAGTCATAG+AGG | + | chr6_3:20124580-20124599 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTGCTTTGTA+GGG | - | chr6_3:20124609-20124628 | Msa0943920:intron | 20.0% |
| !! | TAGTTACTATTAATAAAGCA+AGG | + | chr6_3:20124996-20125015 | None:intergenic | 20.0% |
| !!! | AATATGTTTTAATATTCTGC+AGG | - | chr6_3:20125416-20125435 | Msa0943920:intron | 20.0% |
| !! | ATATTGTCTATTGAGAAATA+GGG | + | chr6_3:20125547-20125566 | None:intergenic | 20.0% |
| !!! | TGTTTTTGGAATTATATCAT+AGG | - | chr6_3:20125644-20125663 | Msa0943920:intron | 20.0% |
| !! | CTTGTATATGAAATGTTATT+TGG | - | chr6_3:20125954-20125973 | Msa0943920:CDS | 20.0% |
| !! | TTATTTGGACTTACATAATT+TGG | - | chr6_3:20125969-20125988 | Msa0943920:CDS | 20.0% |
| !!! | AATTTGTTTCTAGTATATTG+TGG | - | chr6_3:20126045-20126064 | Msa0943920:intron | 20.0% |
| !!! | CAATTTGATTTTTTAAAGTG+TGG | + | chr6_3:20126326-20126345 | None:intergenic | 20.0% |
| !! | ATGCTTAGAAAAAAAAAACT+TGG | + | chr6_3:20126490-20126509 | None:intergenic | 20.0% |
| !! | ACTACATTGAAATAATTACT+TGG | + | chr6_3:20126519-20126538 | None:intergenic | 20.0% |
| !! | GTAATTATTTCAATGTAGTT+TGG | - | chr6_3:20126520-20126539 | Msa0943920:five_prime_UTR | 20.0% |
| ! | ATTCATAGATTTCCAAATCT+AGG | - | chr6_3:20123860-20123879 | Msa0943920:CDS | 25.0% |
| ! | TTCATAGATTTCCAAATCTA+GGG | - | chr6_3:20123861-20123880 | Msa0943920:CDS | 25.0% |
| ! | TGTAAAACAACAACATTGAA+AGG | + | chr6_3:20124451-20124470 | None:intergenic | 25.0% |
| ! | TATTATAAAGTCATAGAGGA+AGG | + | chr6_3:20124576-20124595 | None:intergenic | 25.0% |
| !!! | CTTTTATTTACTTGCTTTGT+AGG | - | chr6_3:20124608-20124627 | Msa0943920:intron | 25.0% |
| !!! | TAGTTTGTTTCTTCTTACTA+AGG | - | chr6_3:20124817-20124836 | Msa0943920:intron | 25.0% |
| ! | ATAGCTTAATACACAAGTAA+TGG | + | chr6_3:20125019-20125038 | None:intergenic | 25.0% |
| !!! | TTTTGTATGCTTTATTTTGG+AGG | - | chr6_3:20125254-20125273 | Msa0943920:intron | 25.0% |
| ! | GGAAACAATATAAACCATAT+AGG | + | chr6_3:20125392-20125411 | None:intergenic | 25.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | + | chr6_3:20125503-20125522 | None:intergenic | 25.0% |
| ! | CATATTGTCTATTGAGAAAT+AGG | + | chr6_3:20125548-20125567 | None:intergenic | 25.0% |
| ! | TTAATTAAAATGGGGAATTG+TGG | + | chr6_3:20125744-20125763 | None:intergenic | 25.0% |
| !! | AATTCTTTTTCTTACGTTTC+AGG | - | chr6_3:20125779-20125798 | Msa0943920:intron | 25.0% |
| !! | ATTCTTTTTCTTACGTTTCA+GGG | - | chr6_3:20125780-20125799 | Msa0943920:intron | 25.0% |
| ! | TCTAGTATATTGTGGTATAA+AGG | - | chr6_3:20126053-20126072 | Msa0943920:intron | 25.0% |
| ! | TGTAATAGTATTTGTAGTTC+TGG | + | chr6_3:20126115-20126134 | None:intergenic | 25.0% |
| ! | AGGTTAACAAATAAACAGTT+CGG | + | chr6_3:20126182-20126201 | None:intergenic | 25.0% |
| !!! | TTTTAAAGTGTGGTTTGATT+CGG | + | chr6_3:20126316-20126335 | None:intergenic | 25.0% |
| !!! | GATACACTTTTTTATCTCAT+AGG | - | chr6_3:20126571-20126590 | Msa0943920:intron | 25.0% |
| ATCACACATGATGAGAATAT+GGG | + | chr6_3:20123808-20123827 | None:intergenic | 30.0% | |
| AATCACACATGATGAGAATA+TGG | + | chr6_3:20123809-20123828 | None:intergenic | 30.0% | |
| AAATTACTCTTTGACGATGT+CGG | + | chr6_3:20123935-20123954 | None:intergenic | 30.0% | |
| AATCAGATAAGAGGATGAAA+AGG | + | chr6_3:20123958-20123977 | None:intergenic | 30.0% | |
| AAATCACGAAATCAGATAAG+AGG | + | chr6_3:20123967-20123986 | None:intergenic | 30.0% | |
| TAGTTTCTGTTGTGGATTTA+GGG | - | chr6_3:20124011-20124030 | Msa0943920:CDS | 30.0% | |
| ! | ATTCAATTTTAGGCCACTAA+AGG | - | chr6_3:20124406-20124425 | Msa0943920:intron | 30.0% |
| !!! | GTTGTTGTTTTACATGAAGA+TGG | - | chr6_3:20124457-20124476 | Msa0943920:intron | 30.0% |
| TTGCACAAACTAGATATGAT+AGG | + | chr6_3:20124519-20124538 | None:intergenic | 30.0% | |
| CAATAATTGCTTAGCTACAA+GGG | - | chr6_3:20124849-20124868 | Msa0943920:intron | 30.0% | |
| TTGCTTAGATGATAGAATGA+CGG | - | chr6_3:20124880-20124899 | Msa0943920:intron | 30.0% | |
| TTTCAACATCATGGTCTAAT+AGG | - | chr6_3:20125052-20125071 | Msa0943920:intron | 30.0% | |
| TATTGTAGCATGCGTATAAA+AGG | - | chr6_3:20125213-20125232 | Msa0943920:intron | 30.0% | |
| ATACTTGTATGCATGTTGTT+TGG | - | chr6_3:20125288-20125307 | Msa0943920:intron | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | + | chr6_3:20125498-20125517 | None:intergenic | 30.0% | |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | - | chr6_3:20125630-20125649 | Msa0943920:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | - | chr6_3:20125690-20125709 | Msa0943920:intron | 30.0% |
| GTACAAAATCTACCAATTGT+TGG | + | chr6_3:20125819-20125838 | None:intergenic | 30.0% | |
| TTCATATACAAGACAGTACT+AGG | + | chr6_3:20125946-20125965 | None:intergenic | 30.0% | |
| ! | TTAAATTTGGCTCAAATTGC+TGG | - | chr6_3:20126228-20126247 | Msa0943920:intron | 30.0% |
| ! | GTTCACAGTTCTTTTCTTTT+TGG | - | chr6_3:20126408-20126427 | Msa0943920:intron | 30.0% |
| GTTCGGTTTAACATTCAATT+TGG | - | chr6_3:20126435-20126454 | Msa0943920:intron | 30.0% | |
| TTCACAAACTTCAAAGAGTT+TGG | + | chr6_3:20126600-20126619 | None:intergenic | 30.0% | |
| TGATAACATGACAATGATCT+TGG | - | chr6_3:20126670-20126689 | Msa0943920:intron | 30.0% | |
| TACATGTATGCATTTAGTGT+TGG | + | chr6_3:20126814-20126833 | None:intergenic | 30.0% | |
| TCTCATCATGTGTGATTCTT+CGG | - | chr6_3:20123812-20123831 | Msa0943920:three_prime_UTR | 35.0% | |
| TCATTCTGTAGTTTCTGTTG+TGG | - | chr6_3:20124003-20124022 | Msa0943920:CDS | 35.0% | |
| GTAGTTTCTGTTGTGGATTT+AGG | - | chr6_3:20124010-20124029 | Msa0943920:CDS | 35.0% | |
| TGTTGTGGATTTAGGGATTT+AGG | - | chr6_3:20124018-20124037 | Msa0943920:CDS | 35.0% | |
| GTTGTGGATTTAGGGATTTA+GGG | - | chr6_3:20124019-20124038 | Msa0943920:CDS | 35.0% | |
| ! | TTAGGGATTTAGGGATTTTG+TGG | - | chr6_3:20124028-20124047 | Msa0943920:intron | 35.0% |
| TTATTGGAGCTACTTACTTC+AGG | - | chr6_3:20124359-20124378 | Msa0943920:intron | 35.0% | |
| ACATTAACCATGACCTTTAG+TGG | + | chr6_3:20124422-20124441 | None:intergenic | 35.0% | |
| TAGGATGATGAAAAGTTACC+AGG | - | chr6_3:20124681-20124700 | Msa0943920:intron | 35.0% | |
| !! | TGTTAATTTTGTTGGGTTGC+CGG | - | chr6_3:20124775-20124794 | Msa0943920:intron | 35.0% |
| CCTTGTAGCTAAGCAATTAT+TGG | + | chr6_3:20124851-20124870 | None:intergenic | 35.0% | |
| CCAATAATTGCTTAGCTACA+AGG | - | chr6_3:20124848-20124867 | Msa0943920:intron | 35.0% | |
| TAGATGATAGAATGACGGTA+TGG | - | chr6_3:20124885-20124904 | Msa0943920:intron | 35.0% | |
| ! | AATGTTTATGTCTGGATTGG+CGG | + | chr6_3:20125495-20125514 | None:intergenic | 35.0% |
| TAAACTCATCTTCGTCATGA+AGG | + | chr6_3:20125674-20125693 | None:intergenic | 35.0% | |
| GGTATAAAGGTTCCAATCAT+CGG | - | chr6_3:20126066-20126085 | Msa0943920:intron | 35.0% | |
| CAATTTGGTACACAAAGCAA+AGG | + | chr6_3:20126202-20126221 | None:intergenic | 35.0% | |
| !! | CAGTTCTTTTCTTTTTGGTG+TGG | - | chr6_3:20126413-20126432 | Msa0943920:intron | 35.0% |
| !! | CTTTTCTTTTTGGTGTGGTT+CGG | - | chr6_3:20126418-20126437 | Msa0943920:intron | 35.0% |
| GAAGATGATTGTTCTTGAGT+CGG | + | chr6_3:20126728-20126747 | None:intergenic | 35.0% | |
| GTTTAAATGACGAGACATTG+TGG | - | chr6_3:20126853-20126872 | Msa0943920:five_prime_UTR | 35.0% | |
| TGAAACCTGAAGAGAGAGTT+GGG | + | chr6_3:20123686-20123705 | None:intergenic | 40.0% | |
| AGAACGCAGTGAAGAAAGTT+TGG | + | chr6_3:20123734-20123753 | None:intergenic | 40.0% | |
| ACACATGATGAGAATATGGG+AGG | + | chr6_3:20123805-20123824 | None:intergenic | 40.0% | |
| CAAATCGCAAACCCTAGATT+TGG | + | chr6_3:20123875-20123894 | None:intergenic | 40.0% | |
| ! | TTAGGGATTTTGTGGATCTC+AGG | - | chr6_3:20124036-20124055 | Msa0943920:intron | 40.0% |
| GGTGAAAATGACAAGCTTAG+TGG | - | chr6_3:20124287-20124306 | Msa0943920:intron | 40.0% | |
| AAATGACAAGCTTAGTGGAG+AGG | - | chr6_3:20124292-20124311 | Msa0943920:intron | 40.0% | |
| GTAAGTAGCTCCAATAACAC+AGG | + | chr6_3:20124356-20124375 | None:intergenic | 40.0% | |
| ! | TTTTAGGCCACTAAAGGTCA+TGG | - | chr6_3:20124412-20124431 | Msa0943920:intron | 40.0% |
| ! | TTTTCATCATCCTACCTCGA+AGG | + | chr6_3:20124675-20124694 | None:intergenic | 40.0% |
| TGATTCTTATGCACTCTTCC+TGG | + | chr6_3:20124702-20124721 | None:intergenic | 40.0% | |
| AGCAAAAACAGATCCTGTAC+CGG | + | chr6_3:20124797-20124816 | None:intergenic | 40.0% | |
| !!! | TGCTTTATTTTGGAGGCAAG+AGG | - | chr6_3:20125261-20125280 | Msa0943920:intron | 40.0% |
| !!! | TTTATTTTGGAGGCAAGAGG+AGG | - | chr6_3:20125264-20125283 | Msa0943920:intron | 40.0% |
| GCGAAGAAATTGCACCTATA+TGG | - | chr6_3:20125375-20125394 | Msa0943920:CDS | 40.0% | |
| TTAATATTCTGCAGGTGACG+TGG | - | chr6_3:20125424-20125443 | Msa0943920:intron | 40.0% | |
| ! | TAGGGTAATCTGACTTGCAA+TGG | + | chr6_3:20125529-20125548 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATT+TGG | - | chr6_3:20125697-20125716 | Msa0943920:intron | 40.0% |
| TTGCCTATCAAGCCAACAAT+TGG | - | chr6_3:20125804-20125823 | Msa0943920:CDS | 40.0% | |
| !! | CTACCAATTGTTGGCTTGAT+AGG | + | chr6_3:20125810-20125829 | None:intergenic | 40.0% |
| TGTACGTCAAGAACTTCTCT+TGG | - | chr6_3:20125834-20125853 | Msa0943920:intron | 40.0% | |
| TCTGCGCATTAACTGATGTT+AGG | - | chr6_3:20126275-20126294 | Msa0943920:CDS | 40.0% | |
| !! | TTTGTGAAAGAGTGCTAGAC+CGG | - | chr6_3:20126612-20126631 | Msa0943920:intron | 40.0% |
| AGATGCATCTGAACCAACAT+TGG | - | chr6_3:20126757-20126776 | Msa0943920:five_prime_UTR | 40.0% | |
| CTTCAACTGTTCTCCAATGT+TGG | + | chr6_3:20126773-20126792 | None:intergenic | 40.0% | |
| CATTGGAGAACAGTTGAAGT+TGG | - | chr6_3:20126774-20126793 | Msa0943920:five_prime_UTR | 40.0% | |
| AAACACCCAACTCTCTCTTC+AGG | - | chr6_3:20123678-20123697 | Msa0943920:three_prime_UTR | 45.0% | |
| GTGAAACCTGAAGAGAGAGT+TGG | + | chr6_3:20123687-20123706 | None:intergenic | 45.0% | |
| TGGAAGGTGGAATCGAATCA+AGG | + | chr6_3:20123782-20123801 | None:intergenic | 45.0% | |
| ATGAGAATATGGGAGGTGGA+AGG | + | chr6_3:20123798-20123817 | None:intergenic | 45.0% | |
| CATGATGAGAATATGGGAGG+TGG | + | chr6_3:20123802-20123821 | None:intergenic | 45.0% | |
| !!! | AGAGGAGGGTTTTGTTGTCA+TGG | - | chr6_3:20124310-20124329 | Msa0943920:intron | 45.0% |
| !!! | GGTTTTGTTGTCATGGTTGC+AGG | - | chr6_3:20124317-20124336 | Msa0943920:intron | 45.0% |
| AGCGAATGAGCCTGTGTTAT+TGG | - | chr6_3:20124343-20124362 | Msa0943920:intron | 45.0% | |
| TGGAGCTACTTACTTCAGGT+TGG | - | chr6_3:20124363-20124382 | Msa0943920:intron | 45.0% | |
| ! | GAACAGCTCTTTTTCCTTCG+AGG | - | chr6_3:20124658-20124677 | Msa0943920:intron | 45.0% |
| ! | AGCTCTTTTTCCTTCGAGGT+AGG | - | chr6_3:20124662-20124681 | Msa0943920:intron | 45.0% |
| GCTTGTGATGGCATTTGGTA+TGG | - | chr6_3:20125702-20125721 | Msa0943920:intron | 45.0% | |
| ACACAGACAGAACCGATGAT+TGG | + | chr6_3:20126081-20126100 | None:intergenic | 45.0% | |
| TGCTGGCCATCACAAGTTAA+AGG | - | chr6_3:20126245-20126264 | Msa0943920:intron | 45.0% | |
| !! | CGAGTGCCTTTAACTTGTGA+TGG | + | chr6_3:20126254-20126273 | None:intergenic | 45.0% |
| !! | GTGTGGTTTGATTCGGTCTT+TGG | + | chr6_3:20126309-20126328 | None:intergenic | 45.0% |
| GTTCATGAACTGAACTGAGC+TGG | + | chr6_3:20126387-20126406 | None:intergenic | 45.0% | |
| CCATCACCAACAACCAAAGA+TGG | + | chr6_3:20126647-20126666 | None:intergenic | 45.0% | |
| ! | CCATCTTTGGTTGTTGGTGA+TGG | - | chr6_3:20126644-20126663 | Msa0943920:intron | 45.0% |
| AGAATATGGGAGGTGGAAGG+TGG | + | chr6_3:20123795-20123814 | None:intergenic | 50.0% | |
| TGACAAGCTTAGTGGAGAGG+AGG | - | chr6_3:20124295-20124314 | Msa0943920:intron | 50.0% | |
| GACAAGCTTAGTGGAGAGGA+GGG | - | chr6_3:20124296-20124315 | Msa0943920:intron | 50.0% | |
| !! | TTTTGTTGGGTTGCCGGTAC+AGG | - | chr6_3:20124781-20124800 | Msa0943920:CDS | 50.0% |
| !! | AAGAGTGCTAGACCGGTGTT+TGG | - | chr6_3:20126619-20126638 | Msa0943920:intron | 50.0% |
| TTGGCGCCATCTTTGGTTGT+TGG | - | chr6_3:20126638-20126657 | Msa0943920:intron | 50.0% | |
| GGTGGAATCGAATCAAGGCG+CGG | + | chr6_3:20123777-20123796 | None:intergenic | 55.0% | |
| CCAAAGATGGCGCCAAACAC+CGG | + | chr6_3:20126634-20126653 | None:intergenic | 55.0% | |
| AATCGAATCAAGGCGCGGCG+CGG | + | chr6_3:20123772-20123791 | None:intergenic | 60.0% | |
| CCGGTGTTTGGCGCCATCTT+TGG | - | chr6_3:20126631-20126650 | Msa0943920:intron | 60.0% | |
| ! | GTCGGTGCACTAGTCTGCAC+TGG | + | chr6_3:20126710-20126729 | None:intergenic | 60.0% |
| AATCAAGGCGCGGCGCGGCT+TGG | + | chr6_3:20123767-20123786 | None:intergenic | 70.0% | |
| !! | CAAGGCGCGGCGCGGCTTGG+TGG | + | chr6_3:20123764-20123783 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 20123677 | 20126954 | 20123677 | ID=Msa0943920;Name=Msa0943920 |
| chr6_3 | mRNA | 20123677 | 20126954 | 20123677 | ID=Msa0943920-mRNA-1;Parent=Msa0943920;Name=Msa0943920-mRNA-1;_AED=0.19;_eAED=0.19;_QI=388|0.8|0.72|1|0.8|0.81|11|164|200 |
| chr6_3 | exon | 20123677 | 20124038 | 20123677 | ID=Msa0943920-mRNA-1:exon:6016;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20124776 | 20124830 | 20124776 | ID=Msa0943920-mRNA-1:exon:6015;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20124913 | 20124965 | 20124913 | ID=Msa0943920-mRNA-1:exon:6014;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20125117 | 20125193 | 20125117 | ID=Msa0943920-mRNA-1:exon:6013;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20125346 | 20125410 | 20125346 | ID=Msa0943920-mRNA-1:exon:6012;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20125489 | 20125505 | 20125489 | ID=Msa0943920-mRNA-1:exon:6011;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20125793 | 20125828 | 20125793 | ID=Msa0943920-mRNA-1:exon:6010;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20125952 | 20126001 | 20125952 | ID=Msa0943920-mRNA-1:exon:6009;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20126251 | 20126343 | 20126251 | ID=Msa0943920-mRNA-1:exon:6008;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20126470 | 20126545 | 20126470 | ID=Msa0943920-mRNA-1:exon:6007;Parent=Msa0943920-mRNA-1 |
| chr6_3 | exon | 20126684 | 20126954 | 20126684 | ID=Msa0943920-mRNA-1:exon:6006;Parent=Msa0943920-mRNA-1 |
| chr6_3 | five_prime_UTR | 20126684 | 20126954 | 20126684 | ID=Msa0943920-mRNA-1:five_prime_utr;Parent=Msa0943920-mRNA-1 |
| chr6_3 | five_prime_UTR | 20126470 | 20126545 | 20126470 | ID=Msa0943920-mRNA-1:five_prime_utr;Parent=Msa0943920-mRNA-1 |
| chr6_3 | five_prime_UTR | 20126303 | 20126343 | 20126303 | ID=Msa0943920-mRNA-1:five_prime_utr;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20126251 | 20126302 | 20126251 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20125952 | 20126001 | 20125952 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20125793 | 20125828 | 20125793 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20125489 | 20125505 | 20125489 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20125346 | 20125410 | 20125346 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20125117 | 20125193 | 20125117 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20124913 | 20124965 | 20124913 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20124776 | 20124830 | 20124776 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | CDS | 20123841 | 20124038 | 20123841 | ID=Msa0943920-mRNA-1:cds;Parent=Msa0943920-mRNA-1 |
| chr6_3 | three_prime_UTR | 20123677 | 20123840 | 20123677 | ID=Msa0943920-mRNA-1:three_prime_utr;Parent=Msa0943920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
