Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810540 | XP_024631053.1 | 98.425 | 127 | 2 | 0 | 33 | 159 | 232 | 358 | 9.74e-84 | 260 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810540 | sp|Q67UP9|P2C58_ORYSJ | 57.143 | 140 | 55 | 3 | 12 | 149 | 214 | 350 | 2.90e-49 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810540 | G7I891 | 98.425 | 127 | 2 | 0 | 33 | 159 | 232 | 358 | 4.65e-84 | 260 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0110270 | Msa0810540 | 0.803715 | 3.054656e-49 | -8.615850e-47 |
| Msa0810540 | Msa0846210 | 0.802065 | 6.693829e-49 | -8.615850e-47 |
| Msa0810540 | Msa0943920 | 0.904237 | 1.513055e-79 | -8.615850e-47 |
| Msa0810540 | Msa1014290 | 0.872311 | 3.504786e-67 | -8.615850e-47 |
| Msa0810540 | Msa1116250 | 0.802372 | 5.789669e-49 | -8.615850e-47 |
| Msa0386580 | Msa0810540 | 0.819919 | 9.018146e-53 | -8.615850e-47 |
| Msa0450630 | Msa0810540 | 0.802010 | 6.870990e-49 | -8.615850e-47 |
| Msa0270520 | Msa0810540 | 0.807917 | 3.999751e-50 | -8.615850e-47 |
| Msa0349540 | Msa0810540 | 0.897360 | 1.515699e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810540 | MtrunA17_Chr1g0150071 | 98.425 | 127 | 2 | 0 | 33 | 159 | 232 | 358 | 8.96e-88 | 260 |
| Msa0810540 | MtrunA17_Chr3g0136811 | 73.643 | 129 | 32 | 1 | 33 | 159 | 232 | 360 | 2.50e-62 | 196 |
| Msa0810540 | MtrunA17_Chr4g0001761 | 59.055 | 127 | 51 | 1 | 33 | 159 | 232 | 357 | 9.53e-48 | 158 |
| Msa0810540 | MtrunA17_Chr4g0068971 | 50.000 | 60 | 27 | 1 | 33 | 92 | 142 | 198 | 1.19e-11 | 60.8 |
| Msa0810540 | MtrunA17_Chr5g0407161 | 31.897 | 116 | 69 | 5 | 33 | 146 | 256 | 363 | 6.72e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0810540 | AT4G31860.1 | 57.937 | 126 | 53 | 0 | 33 | 158 | 232 | 357 | 3.42e-50 | 164 |
| Msa0810540 | AT2G25070.1 | 69.307 | 101 | 31 | 0 | 33 | 133 | 232 | 332 | 6.12e-49 | 161 |
| Msa0810540 | AT2G25070.2 | 69.307 | 101 | 31 | 0 | 33 | 133 | 232 | 332 | 6.12e-49 | 161 |
| Msa0810540 | AT4G31860.3 | 63.333 | 60 | 22 | 0 | 33 | 92 | 232 | 291 | 6.17e-24 | 95.1 |
| Msa0810540 | AT4G31860.2 | 63.636 | 44 | 16 | 0 | 33 | 76 | 232 | 275 | 7.35e-15 | 70.1 |
Find 34 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 5_3:-39080076 | None:intergenic |
| CCGGTGTTTGGCGCCATCTT+TGG | 0.215436 | 5_3:+39080901 | Msa0810540:CDS |
| TTCACAAACTTCAGAGAGTT+TGG | 0.281514 | 5_3:-39080867 | None:intergenic |
| AGCGAATGAGCCTGTGTTAT+TGG | 0.325490 | 5_3:+39078593 | Msa0810540:CDS |
| TTATTGGAGCTACTTACTTC+AGG | 0.327624 | 5_3:+39078609 | Msa0810540:CDS |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 5_3:-39079769 | None:intergenic |
| TGATAGCTTGTGATGGCATT+TGG | 0.432620 | 5_3:+39079966 | Msa0810540:CDS |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 5_3:-39080085 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 5_3:-39079764 | None:intergenic |
| CCATCTTTGGCTGTTGGTGA+TGG | 0.439337 | 5_3:+39080914 | Msa0810540:CDS |
| CTTCAACTGTTCTCCAATGT+TGG | 0.445319 | 5_3:-39081040 | None:intergenic |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 5_3:-39079761 | None:intergenic |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 5_3:+39080073 | Msa0810540:CDS |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 5_3:+39080103 | Msa0810540:CDS |
| TGATAACATGACAATGATCT+TGG | 0.507507 | 5_3:+39080940 | Msa0810540:CDS |
| AAGAGTGCTAGACCGGTGTT+TGG | 0.509475 | 5_3:+39080889 | Msa0810540:CDS |
| GTCGGTGCACTAGTCTGCAC+TGG | 0.511375 | 5_3:-39080977 | None:intergenic |
| TTGGCGCCATCTTTGGCTGT+TGG | 0.522338 | 5_3:+39080908 | Msa0810540:CDS |
| CCAAAGATGGCGCCAAACAC+CGG | 0.530584 | 5_3:-39080901 | None:intergenic |
| CATTGGAGAACAGTTGAAGT+TGG | 0.538789 | 5_3:+39081044 | Msa0810540:exon |
| ATTCGCTACACCTGCAACCA+TGG | 0.540542 | 5_3:-39078577 | None:intergenic |
| TTTGTGAAAGAGTGCTAGAC+CGG | 0.548769 | 5_3:+39080882 | Msa0810540:CDS |
| AGATGCATCTGAACCAACAT+TGG | 0.550287 | 5_3:+39081027 | Msa0810540:CDS |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 5_3:-39079940 | None:intergenic |
| CCATCACCAACAGCCAAAGA+TGG | 0.572550 | 5_3:-39080914 | None:intergenic |
| GACAAGCTTAGTGGAGAGGA+GGG | 0.575209 | 5_3:+39078546 | Msa0810540:CDS |
| TACATGTATGCATTTAGTGT+TGG | 0.575470 | 5_3:-39081081 | None:intergenic |
| GAAGATGATTGTTCTTGAGT+CGG | 0.584415 | 5_3:-39080995 | None:intergenic |
| TTAATATTCTGCAGGTGACG+TGG | 0.584418 | 5_3:+39079693 | Msa0810540:intron |
| TGACAAGCTTAGTGGAGAGG+AGG | 0.594113 | 5_3:+39078545 | Msa0810540:CDS |
| GTTTACATGACGAAACATTG+TGG | 0.632203 | 5_3:+39081123 | Msa0810540:three_prime_UTR |
| GTAAGTAGCTCCAATAACAC+AGG | 0.642874 | 5_3:-39078603 | None:intergenic |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 5_3:+39079959 | Msa0810540:CDS |
| AAATGACAAGCTTAGTGGAG+AGG | 0.657174 | 5_3:+39078542 | Msa0810540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAACAAAAACAAATTAAA+GGG | - | chr5_3:39079012-39079031 | None:intergenic | 10.0% |
| !! | AATTAACAAAAACAAATTAA+AGG | - | chr5_3:39079013-39079032 | None:intergenic | 10.0% |
| !! | GAATATTAAAACATATTAAA+TGG | - | chr5_3:39079682-39079701 | None:intergenic | 10.0% |
| !! | AAATGACATTTAATTAAAAT+GGG | - | chr5_3:39080022-39080041 | None:intergenic | 10.0% |
| !!! | TTAACTGTTACTTAAATTTT+TGG | + | chr5_3:39078502-39078521 | Msa0810540:intron | 15.0% |
| !! | AAAATATAGAAATCTACTTT+GGG | - | chr5_3:39078803-39078822 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTAATTTTGT+TGG | + | chr5_3:39079017-39079036 | Msa0810540:intron | 15.0% |
| !!! | TTGTTTTTGTTAATTTTGTT+GGG | + | chr5_3:39079018-39079037 | Msa0810540:intron | 15.0% |
| !!! | ATATTTTCAAAGAAATTAGT+CGG | - | chr5_3:39079177-39079196 | None:intergenic | 15.0% |
| !!! | AATTTCTTTGAAAATATTGA+TGG | + | chr5_3:39079180-39079199 | Msa0810540:intron | 15.0% |
| !! | ATAATAAAATTTCAACATCA+TGG | + | chr5_3:39079309-39079328 | Msa0810540:intron | 15.0% |
| !! | TACAAAATAAAATAATAGGA+AGG | - | chr5_3:39079510-39079529 | None:intergenic | 15.0% |
| !! | AGCATACAAAATAAAATAAT+AGG | - | chr5_3:39079514-39079533 | None:intergenic | 15.0% |
| !!! | TTATTTTGTATGCTTTATTT+TGG | + | chr5_3:39079520-39079539 | Msa0810540:intron | 15.0% |
| !! | AATGACATTTAATTAAAATG+GGG | - | chr5_3:39080021-39080040 | None:intergenic | 15.0% |
| !! | GAAATGACATTTAATTAAAA+TGG | - | chr5_3:39080023-39080042 | None:intergenic | 15.0% |
| !! | CAAATTTAATAATGACAATT+TGG | - | chr5_3:39080487-39080506 | None:intergenic | 15.0% |
| !! | CAAATTGTCATTATTAAATT+TGG | + | chr5_3:39080485-39080504 | Msa0810540:intron | 15.0% |
| !! | TTAAAAAAATCAAATTGTGA+AGG | + | chr5_3:39080599-39080618 | Msa0810540:intron | 15.0% |
| !!! | AATTTTTGGAAAATTTGTGA+AGG | + | chr5_3:39078516-39078535 | Msa0810540:intron | 20.0% |
| !! | GAAAATATAGAAATCTACTT+TGG | - | chr5_3:39078804-39078823 | None:intergenic | 20.0% |
| !! | CTATTATTATAAAGTCATAG+AGG | - | chr5_3:39078830-39078849 | None:intergenic | 20.0% |
| !!! | TTTTATTTACTTGCTTTGTA+GGG | + | chr5_3:39078859-39078878 | Msa0810540:intron | 20.0% |
| !! | TAGTTACTATTAATAAAGCA+AGG | - | chr5_3:39079262-39079281 | None:intergenic | 20.0% |
| !!! | AATATGTTTTAATATTCTGC+AGG | + | chr5_3:39079685-39079704 | Msa0810540:intron | 20.0% |
| !! | ATATTGTCTATTGAGAAATA+GGG | - | chr5_3:39079816-39079835 | None:intergenic | 20.0% |
| !!! | TGTTTTTGGAATTATATCAT+AGG | + | chr5_3:39079913-39079932 | Msa0810540:intron | 20.0% |
| !! | CTTGTATATGAAATGTTATT+TGG | + | chr5_3:39080224-39080243 | Msa0810540:intron | 20.0% |
| !! | TTATTTGGACTTACATAATT+TGG | + | chr5_3:39080239-39080258 | Msa0810540:intron | 20.0% |
| !!! | AATTTGTTTCTAGTATATTG+TGG | + | chr5_3:39080315-39080334 | Msa0810540:intron | 20.0% |
| !!! | CAATTTGATTTTTTTAAGTG+TGG | - | chr5_3:39080596-39080615 | None:intergenic | 20.0% |
| !! | TATGCTTAGAAAAAAAAACT+TGG | - | chr5_3:39080760-39080779 | None:intergenic | 20.0% |
| !! | ACTACATTGAAATAATTACT+TGG | - | chr5_3:39080788-39080807 | None:intergenic | 20.0% |
| !! | GTAATTATTTCAATGTAGTT+TGG | + | chr5_3:39080789-39080808 | Msa0810540:intron | 20.0% |
| ! | ATTCTTAGATTTCCAAATCT+AGG | + | chr5_3:39078110-39078129 | Msa0810540:intron | 25.0% |
| ! | TTCTTAGATTTCCAAATCTA+GGG | + | chr5_3:39078111-39078130 | Msa0810540:intron | 25.0% |
| !! | TCTACGTTTGATTCAATTTT+AGG | + | chr5_3:39078646-39078665 | Msa0810540:intron | 25.0% |
| ! | TGTAAAACAACAACATTGAA+AGG | - | chr5_3:39078701-39078720 | None:intergenic | 25.0% |
| !!! | GTTGTTGTTTTACATAAAGA+TGG | + | chr5_3:39078707-39078726 | Msa0810540:intron | 25.0% |
| ! | TATTATAAAGTCATAGAGGA+AGG | - | chr5_3:39078826-39078845 | None:intergenic | 25.0% |
| !!! | CTTTTATTTACTTGCTTTGT+AGG | + | chr5_3:39078858-39078877 | Msa0810540:intron | 25.0% |
| !!! | TAGTTTGTTTCTTCTTACTA+AGG | + | chr5_3:39079067-39079086 | Msa0810540:intron | 25.0% |
| ! | ATAGCTTAATACACAAGTAA+TGG | - | chr5_3:39079285-39079304 | None:intergenic | 25.0% |
| !!! | TTTTGTATGCTTTATTTTGG+AGG | + | chr5_3:39079523-39079542 | Msa0810540:intron | 25.0% |
| ! | GGAAACAATATAAACCATAT+AGG | - | chr5_3:39079661-39079680 | None:intergenic | 25.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | - | chr5_3:39079772-39079791 | None:intergenic | 25.0% |
| ! | CATATTGTCTATTGAGAAAT+AGG | - | chr5_3:39079817-39079836 | None:intergenic | 25.0% |
| !! | CTATTTCTCAATAGACAATA+TGG | + | chr5_3:39079815-39079834 | Msa0810540:intron | 25.0% |
| ! | TTAATTAAAATGGGGAATTG+TGG | - | chr5_3:39080013-39080032 | None:intergenic | 25.0% |
| !! | AATTCTTTTTCTTACGTTTC+AGG | + | chr5_3:39080048-39080067 | Msa0810540:intron | 25.0% |
| !! | ATTCTTTTTCTTACGTTTCA+GGG | + | chr5_3:39080049-39080068 | Msa0810540:intron | 25.0% |
| ! | TTCATATACAAGACAATACT+AGG | - | chr5_3:39080216-39080235 | None:intergenic | 25.0% |
| ! | TCTAGTATATTGTGGTATAA+AGG | + | chr5_3:39080323-39080342 | Msa0810540:intron | 25.0% |
| ! | TGTAATAGTATTTGTAGTTC+TGG | - | chr5_3:39080385-39080404 | None:intergenic | 25.0% |
| ! | AGGTTAACAAATAAACAGTT+CGG | - | chr5_3:39080452-39080471 | None:intergenic | 25.0% |
| !!! | TTTTTAAGTGTGGTTTGATT+CGG | - | chr5_3:39080586-39080605 | None:intergenic | 25.0% |
| AAATTACTCTTTGACGATGT+CGG | - | chr5_3:39078185-39078204 | None:intergenic | 30.0% | |
| AATCAGATAAGAGGATGAAA+AGG | - | chr5_3:39078208-39078227 | None:intergenic | 30.0% | |
| AAATCACGAAATCAGATAAG+AGG | - | chr5_3:39078217-39078236 | None:intergenic | 30.0% | |
| TAGTTTCTGTTGTGCATTTA+GGG | + | chr5_3:39078261-39078280 | Msa0810540:intron | 30.0% | |
| ! | ATTCAATTTTAGGCCACTAA+AGG | + | chr5_3:39078656-39078675 | Msa0810540:intron | 30.0% |
| TTGCACAAACTAGATATGAT+AGG | - | chr5_3:39078769-39078788 | None:intergenic | 30.0% | |
| CAATAATTGCTTAGCTACAA+GGG | + | chr5_3:39079099-39079118 | Msa0810540:intron | 30.0% | |
| GTCATTAGATGATAGAATGA+CGG | + | chr5_3:39079146-39079165 | Msa0810540:intron | 30.0% | |
| TTTCAACATCATGGTCTAAT+AGG | + | chr5_3:39079318-39079337 | Msa0810540:intron | 30.0% | |
| TATTGTAGCATGCGTATAAA+AGG | + | chr5_3:39079482-39079501 | Msa0810540:intron | 30.0% | |
| ATACTTGTATGCATGTTGTT+TGG | + | chr5_3:39079557-39079576 | Msa0810540:intron | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | - | chr5_3:39079767-39079786 | None:intergenic | 30.0% | |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | + | chr5_3:39079899-39079918 | Msa0810540:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | + | chr5_3:39079959-39079978 | Msa0810540:CDS | 30.0% |
| GTACAAAATCTACCAATTGT+TGG | - | chr5_3:39080088-39080107 | None:intergenic | 30.0% | |
| ! | TTAAATTTGGCTCAAATTGC+TGG | + | chr5_3:39080498-39080517 | Msa0810540:intron | 30.0% |
| ! | GTTCACAGTTCTTTTCTTTT+TGG | + | chr5_3:39080678-39080697 | Msa0810540:intron | 30.0% |
| GTTCGGTTTAACATTCAATT+TGG | + | chr5_3:39080705-39080724 | Msa0810540:intron | 30.0% | |
| !!! | ATACACTTTTTTCATCTCAC+AGG | + | chr5_3:39080841-39080860 | Msa0810540:intron | 30.0% |
| TGATAACATGACAATGATCT+TGG | + | chr5_3:39080940-39080959 | Msa0810540:CDS | 30.0% | |
| TACATGTATGCATTTAGTGT+TGG | - | chr5_3:39081084-39081103 | None:intergenic | 30.0% | |
| GTAGTTTCTGTTGTGCATTT+AGG | + | chr5_3:39078260-39078279 | Msa0810540:intron | 35.0% | |
| TGTTGTGCATTTAGGGATTT+AGG | + | chr5_3:39078268-39078287 | Msa0810540:intron | 35.0% | |
| GTTGTGCATTTAGGGATTTA+GGG | + | chr5_3:39078269-39078288 | Msa0810540:intron | 35.0% | |
| ! | TTAGGGATTTAGGGATTTTG+TGG | + | chr5_3:39078278-39078297 | Msa0810540:intron | 35.0% |
| TTATTGGAGCTACTTACTTC+AGG | + | chr5_3:39078609-39078628 | Msa0810540:CDS | 35.0% | |
| ACATTAACCATGACCTTTAG+TGG | - | chr5_3:39078672-39078691 | None:intergenic | 35.0% | |
| TAGGATGATGAAAAGTTACC+AGG | + | chr5_3:39078931-39078950 | Msa0810540:intron | 35.0% | |
| !! | TGTTAATTTTGTTGGGTTGC+CGG | + | chr5_3:39079025-39079044 | Msa0810540:intron | 35.0% |
| CCTTGTAGCTAAGCAATTAT+TGG | - | chr5_3:39079101-39079120 | None:intergenic | 35.0% | |
| CCAATAATTGCTTAGCTACA+AGG | + | chr5_3:39079098-39079117 | Msa0810540:intron | 35.0% | |
| TAGATGATAGAATGACGGTA+TGG | + | chr5_3:39079151-39079170 | Msa0810540:intron | 35.0% | |
| ! | AATGTTTATGTCTGGATTGG+CGG | - | chr5_3:39079764-39079783 | None:intergenic | 35.0% |
| TAAACTCATCTTCGTCATGA+AGG | - | chr5_3:39079943-39079962 | None:intergenic | 35.0% | |
| GGTATAAAGGTTCCAATCAT+CGG | + | chr5_3:39080336-39080355 | Msa0810540:intron | 35.0% | |
| CAATTTGGTACACAAAGCAA+AGG | - | chr5_3:39080472-39080491 | None:intergenic | 35.0% | |
| !! | CAGTTCTTTTCTTTTTGGTG+TGG | + | chr5_3:39080683-39080702 | Msa0810540:intron | 35.0% |
| !! | CTTTTCTTTTTGGTGTGGTT+CGG | + | chr5_3:39080688-39080707 | Msa0810540:intron | 35.0% |
| TTCACAAACTTCAGAGAGTT+TGG | - | chr5_3:39080870-39080889 | None:intergenic | 35.0% | |
| GAAGATGATTGTTCTTGAGT+CGG | - | chr5_3:39080998-39081017 | None:intergenic | 35.0% | |
| GTTTACATGACGAAACATTG+TGG | + | chr5_3:39081123-39081142 | Msa0810540:three_prime_UTR | 35.0% | |
| CAAATCGCAAACCCTAGATT+TGG | - | chr5_3:39078125-39078144 | None:intergenic | 40.0% | |
| ! | TTAGGGATTTTGTGGATCTC+AGG | + | chr5_3:39078286-39078305 | Msa0810540:intron | 40.0% |
| GGCAAAAATGACAAGCTTAG+TGG | + | chr5_3:39078537-39078556 | Msa0810540:intron | 40.0% | |
| AAATGACAAGCTTAGTGGAG+AGG | + | chr5_3:39078542-39078561 | Msa0810540:CDS | 40.0% | |
| GTAAGTAGCTCCAATAACAC+AGG | - | chr5_3:39078606-39078625 | None:intergenic | 40.0% | |
| ! | TTTTAGGCCACTAAAGGTCA+TGG | + | chr5_3:39078662-39078681 | Msa0810540:intron | 40.0% |
| ! | TTTTCATCATCCTACCTCGA+AGG | - | chr5_3:39078925-39078944 | None:intergenic | 40.0% |
| TGATTCTTATGCACTCTTCC+TGG | - | chr5_3:39078952-39078971 | None:intergenic | 40.0% | |
| AGCAAAAACAGATCCTGTAC+CGG | - | chr5_3:39079047-39079066 | None:intergenic | 40.0% | |
| !!! | TGCTTTATTTTGGAGGCAAG+AGG | + | chr5_3:39079530-39079549 | Msa0810540:intron | 40.0% |
| !!! | TTTATTTTGGAGGCAAGAGG+AGG | + | chr5_3:39079533-39079552 | Msa0810540:intron | 40.0% |
| GCGAAGAAATTGCACCTATA+TGG | + | chr5_3:39079644-39079663 | Msa0810540:intron | 40.0% | |
| TTAATATTCTGCAGGTGACG+TGG | + | chr5_3:39079693-39079712 | Msa0810540:intron | 40.0% | |
| ! | TAGGGTAATCTGACTTGCAA+TGG | - | chr5_3:39079798-39079817 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATT+TGG | + | chr5_3:39079966-39079985 | Msa0810540:CDS | 40.0% |
| TTGCCTATCAAGCCAACAAT+TGG | + | chr5_3:39080073-39080092 | Msa0810540:CDS | 40.0% | |
| !! | CTACCAATTGTTGGCTTGAT+AGG | - | chr5_3:39080079-39080098 | None:intergenic | 40.0% |
| TGTACGTCAAGAACTTCTCT+TGG | + | chr5_3:39080103-39080122 | Msa0810540:CDS | 40.0% | |
| TCTGCGCATTAACTGATGTT+AGG | + | chr5_3:39080545-39080564 | Msa0810540:intron | 40.0% | |
| !! | TTTGTGAAAGAGTGCTAGAC+CGG | + | chr5_3:39080882-39080901 | Msa0810540:CDS | 40.0% |
| AGATGCATCTGAACCAACAT+TGG | + | chr5_3:39081027-39081046 | Msa0810540:CDS | 40.0% | |
| CTTCAACTGTTCTCCAATGT+TGG | - | chr5_3:39081043-39081062 | None:intergenic | 40.0% | |
| CATTGGAGAACAGTTGAAGT+TGG | + | chr5_3:39081044-39081063 | Msa0810540:exon | 40.0% | |
| AGCGAATGAGCCTGTGTTAT+TGG | + | chr5_3:39078593-39078612 | Msa0810540:CDS | 45.0% | |
| TGGAGCTACTTACTTCAGGT+TGG | + | chr5_3:39078613-39078632 | Msa0810540:intron | 45.0% | |
| ! | GAACAGCTCTTTTTCCTTCG+AGG | + | chr5_3:39078908-39078927 | Msa0810540:intron | 45.0% |
| ! | AGCTCTTTTTCCTTCGAGGT+AGG | + | chr5_3:39078912-39078931 | Msa0810540:intron | 45.0% |
| GCTTGTGATGGCATTTGGTA+TGG | + | chr5_3:39079971-39079990 | Msa0810540:intron | 45.0% | |
| ACACAGACAGAACCGATGAT+TGG | - | chr5_3:39080351-39080370 | None:intergenic | 45.0% | |
| TGCTGGCCATCACAAGTTAA+AGG | + | chr5_3:39080515-39080534 | Msa0810540:intron | 45.0% | |
| !! | CGAGTGCCTTTAACTTGTGA+TGG | - | chr5_3:39080524-39080543 | None:intergenic | 45.0% |
| !! | GTGTGGTTTGATTCGGTCTT+TGG | - | chr5_3:39080579-39080598 | None:intergenic | 45.0% |
| GTTCATGAACTGAACTGAGC+TGG | - | chr5_3:39080657-39080676 | None:intergenic | 45.0% | |
| !!! | TTTTTTAATTTTTAGATAAT+TGG | + | chr5_3:39078469-39078488 | Msa0810540:intron | 5.0% |
| TGACAAGCTTAGTGGAGAGG+AGG | + | chr5_3:39078545-39078564 | Msa0810540:CDS | 50.0% | |
| GACAAGCTTAGTGGAGAGGA+GGG | + | chr5_3:39078546-39078565 | Msa0810540:CDS | 50.0% | |
| !!! | AGAGGAGGGTTTTGTTGCCA+TGG | + | chr5_3:39078560-39078579 | Msa0810540:CDS | 50.0% |
| !!! | GGTTTTGTTGCCATGGTTGC+AGG | + | chr5_3:39078567-39078586 | Msa0810540:CDS | 50.0% |
| ATTCGCTACACCTGCAACCA+TGG | - | chr5_3:39078580-39078599 | None:intergenic | 50.0% | |
| !! | TTTTGTTGGGTTGCCGGTAC+AGG | + | chr5_3:39079031-39079050 | Msa0810540:intron | 50.0% |
| !! | AAGAGTGCTAGACCGGTGTT+TGG | + | chr5_3:39080889-39080908 | Msa0810540:CDS | 50.0% |
| CCATCACCAACAGCCAAAGA+TGG | - | chr5_3:39080917-39080936 | None:intergenic | 50.0% | |
| ! | CCATCTTTGGCTGTTGGTGA+TGG | + | chr5_3:39080914-39080933 | Msa0810540:CDS | 50.0% |
| CCAAAGATGGCGCCAAACAC+CGG | - | chr5_3:39080904-39080923 | None:intergenic | 55.0% | |
| TTGGCGCCATCTTTGGCTGT+TGG | + | chr5_3:39080908-39080927 | Msa0810540:CDS | 55.0% | |
| CCGGTGTTTGGCGCCATCTT+TGG | + | chr5_3:39080901-39080920 | Msa0810540:CDS | 60.0% | |
| ! | GTCGGTGCACTAGTCTGCAC+TGG | - | chr5_3:39080980-39080999 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 39078069 | 39081224 | 39078069 | ID=Msa0810540;Name=Msa0810540 |
| chr5_3 | mRNA | 39078069 | 39081224 | 39078069 | ID=Msa0810540-mRNA-1;Parent=Msa0810540;Name=Msa0810540-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|0.6|0.83|1|0.8|0.83|6|164|159 |
| chr5_3 | exon | 39078069 | 39078072 | 39078069 | ID=Msa0810540-mRNA-1:exon:11845;Parent=Msa0810540-mRNA-1 |
| chr5_3 | exon | 39078538 | 39078630 | 39078538 | ID=Msa0810540-mRNA-1:exon:11846;Parent=Msa0810540-mRNA-1 |
| chr5_3 | exon | 39079707 | 39079783 | 39079707 | ID=Msa0810540-mRNA-1:exon:11847;Parent=Msa0810540-mRNA-1 |
| chr5_3 | exon | 39079935 | 39079987 | 39079935 | ID=Msa0810540-mRNA-1:exon:11848;Parent=Msa0810540-mRNA-1 |
| chr5_3 | exon | 39080070 | 39080124 | 39080070 | ID=Msa0810540-mRNA-1:exon:11849;Parent=Msa0810540-mRNA-1 |
| chr5_3 | exon | 39080863 | 39081224 | 39080863 | ID=Msa0810540-mRNA-1:exon:11850;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39078069 | 39078072 | 39078069 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39078538 | 39078630 | 39078538 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39079707 | 39079783 | 39079707 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39079935 | 39079987 | 39079935 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39080070 | 39080124 | 39080070 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | CDS | 39080863 | 39081060 | 39080863 | ID=Msa0810540-mRNA-1:cds;Parent=Msa0810540-mRNA-1 |
| chr5_3 | three_prime_UTR | 39081061 | 39081224 | 39081061 | ID=Msa0810540-mRNA-1:three_prime_utr;Parent=Msa0810540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
