Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349540 | XP_024631053.1 | 96.154 | 130 | 5 | 0 | 56 | 185 | 229 | 358 | 2.97e-84 | 263 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349540 | sp|Q67UP9|P2C58_ORYSJ | 63.415 | 123 | 41 | 2 | 56 | 175 | 229 | 350 | 1.24e-50 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349540 | G7I891 | 96.154 | 130 | 5 | 0 | 56 | 185 | 229 | 358 | 1.42e-84 | 263 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016580 | Msa0349540 | 0.803066 | 4.163266e-49 | -8.615850e-47 |
| Msa0110270 | Msa0349540 | 0.816109 | 6.550065e-52 | -8.615850e-47 |
| Msa0349540 | Msa0386580 | 0.804617 | 1.982063e-49 | -8.615850e-47 |
| Msa0349540 | Msa0810540 | 0.897360 | 1.515699e-76 | -8.615850e-47 |
| Msa0349540 | Msa0943920 | 0.888758 | 4.441687e-73 | -8.615850e-47 |
| Msa0349540 | Msa1014290 | 0.917703 | 3.842506e-86 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349540 | MtrunA17_Chr1g0150071 | 96.154 | 130 | 5 | 0 | 56 | 185 | 229 | 358 | 2.73e-88 | 263 |
| Msa0349540 | MtrunA17_Chr3g0136811 | 73.485 | 132 | 33 | 1 | 56 | 185 | 229 | 360 | 4.02e-64 | 201 |
| Msa0349540 | MtrunA17_Chr4g0001761 | 60.000 | 125 | 49 | 1 | 56 | 180 | 229 | 352 | 4.35e-48 | 160 |
| Msa0349540 | MtrunA17_Chr4g0068971 | 49.206 | 63 | 29 | 1 | 56 | 118 | 139 | 198 | 3.62e-12 | 63.2 |
| Msa0349540 | MtrunA17_Chr5g0407161 | 33.333 | 120 | 68 | 6 | 43 | 158 | 236 | 347 | 1.70e-11 | 62.0 |
| Msa0349540 | MtrunA17_Chr2g0293811 | 46.032 | 63 | 31 | 1 | 56 | 118 | 239 | 298 | 7.87e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349540 | AT4G31860.1 | 57.364 | 129 | 55 | 0 | 56 | 184 | 229 | 357 | 3.80e-51 | 168 |
| Msa0349540 | AT2G25070.1 | 68.269 | 104 | 33 | 0 | 56 | 159 | 229 | 332 | 9.87e-50 | 164 |
| Msa0349540 | AT2G25070.2 | 68.269 | 104 | 33 | 0 | 56 | 159 | 229 | 332 | 9.87e-50 | 164 |
| Msa0349540 | AT4G31860.3 | 61.905 | 63 | 24 | 0 | 56 | 118 | 229 | 291 | 1.16e-24 | 97.8 |
| Msa0349540 | AT4G31860.2 | 61.702 | 47 | 18 | 0 | 56 | 102 | 229 | 275 | 2.01e-15 | 72.8 |
Find 36 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACCAATTGTTGGCTTGAT+AGG | 0.213993 | 3_1:-13273286 | None:intergenic |
| CCGGTGTTTGGCGCCATCTT+TGG | 0.215436 | 3_1:+13274267 | Msa0349540:CDS |
| ATACGCTACACCTGCAACTA+TGG | 0.272571 | 3_1:-13271791 | None:intergenic |
| TTCACAAACTTCAGAGAGTT+TGG | 0.281514 | 3_1:-13274233 | None:intergenic |
| TTATTGGAGCTACGTACTTC+AGG | 0.364902 | 3_1:+13271823 | Msa0349540:CDS |
| CTTCAATTGTTCTCCAATGT+TGG | 0.417766 | 3_1:-13274406 | None:intergenic |
| AAACTTACAATGTTTATGTC+TGG | 0.418978 | 3_1:-13272979 | None:intergenic |
| AGCGTATGAGCCTGTGTTAT+TGG | 0.430594 | 3_1:+13271807 | Msa0349540:CDS |
| TGATAGCTTGTGATGGCATT+TGG | 0.432620 | 3_1:+13273176 | Msa0349540:CDS |
| GTACAAAATCTACCAATTGT+TGG | 0.434248 | 3_1:-13273295 | None:intergenic |
| TACAATGTTTATGTCTGGAT+TGG | 0.435988 | 3_1:-13272974 | None:intergenic |
| CCATCTTTGGCTGTTGGTGA+TGG | 0.439337 | 3_1:+13274280 | Msa0349540:CDS |
| AATGTTTATGTCTGGATTGG+CGG | 0.464448 | 3_1:-13272971 | None:intergenic |
| GGTGAAAATGACAAGCTTAG+TGG | 0.466223 | 3_1:+13271751 | Msa0349540:intron |
| TTGCCTATCAAGCCAACAAT+TGG | 0.471715 | 3_1:+13273283 | Msa0349540:CDS |
| TGTACGTCAAGAACTTCTCT+TGG | 0.476519 | 3_1:+13273313 | Msa0349540:CDS |
| GCCGGTGCCCTAGTCTGCAC+TGG | 0.482486 | 3_1:-13274343 | None:intergenic |
| TGATAACATGACAATGATCT+TGG | 0.507507 | 3_1:+13274306 | Msa0349540:CDS |
| AAGAGTGCTAGACCGGTGTT+TGG | 0.509475 | 3_1:+13274255 | Msa0349540:CDS |
| TTGGCGCCATCTTTGGCTGT+TGG | 0.522338 | 3_1:+13274274 | Msa0349540:CDS |
| CCAAAGATGGCGCCAAACAC+CGG | 0.530584 | 3_1:-13274267 | None:intergenic |
| CATTGGAGAACAATTGAAGT+TGG | 0.547854 | 3_1:+13274410 | Msa0349540:exon |
| TTTGTGAAAGAGTGCTAGAC+CGG | 0.548769 | 3_1:+13274248 | Msa0349540:CDS |
| AGATGCATCTGAACCAACAT+TGG | 0.550287 | 3_1:+13274393 | Msa0349540:CDS |
| TAAACTCATCTTCGTCATGA+AGG | 0.558190 | 3_1:-13273150 | None:intergenic |
| CCATCACCAACAGCCAAAGA+TGG | 0.572550 | 3_1:-13274280 | None:intergenic |
| ACCAGTGCAGACTAGGGCAC+CGG | 0.573117 | 3_1:+13274342 | Msa0349540:CDS |
| GAAGATGATTGTTCTTGAGC+CGG | 0.573200 | 3_1:-13274361 | None:intergenic |
| GACAAGCTTAGTGGAGAGGA+GGG | 0.575209 | 3_1:+13271760 | Msa0349540:CDS |
| TACATGTATGCATTTAGTGT+TGG | 0.575470 | 3_1:-13274447 | None:intergenic |
| TTAATATTCTGCAGGTGACG+TGG | 0.584418 | 3_1:+13272903 | Msa0349540:intron |
| TGACAAGCTTAGTGGAGAGG+AGG | 0.594113 | 3_1:+13271759 | Msa0349540:CDS |
| TTTATAGTGATAGCTTGTGA+TGG | 0.644189 | 3_1:+13273169 | Msa0349540:CDS |
| GTTTACATGACGAGACATTG+TGG | 0.651786 | 3_1:+13274489 | Msa0349540:three_prime_UTR |
| AAATGACAAGCTTAGTGGAG+AGG | 0.658116 | 3_1:+13271756 | Msa0349540:CDS |
| GTACGTAGCTCCAATAACAC+AGG | 0.688784 | 3_1:-13271817 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAATCAAAGAAATTAAAT+AGG | + | chr3_1:13270996-13271015 | Msa0349540:intron | 10.0% |
| !!! | AACTATAATAACTTTTAAAT+AGG | + | chr3_1:13271064-13271083 | Msa0349540:intron | 10.0% |
| !! | ATTAACAAAAACAAATTAAA+GGG | - | chr3_1:13272225-13272244 | None:intergenic | 10.0% |
| !! | AATTAACAAAAACAAATTAA+AGG | - | chr3_1:13272226-13272245 | None:intergenic | 10.0% |
| !! | GAATATTAAAACATATTAAA+TGG | - | chr3_1:13272892-13272911 | None:intergenic | 10.0% |
| !! | AAATGACATTTAATTAAAAT+GGG | - | chr3_1:13273232-13273251 | None:intergenic | 10.0% |
| !! | TTTATATCATAATATTGTCA+CGG | - | chr3_1:13270892-13270911 | None:intergenic | 15.0% |
| !! | TATAAAATTGAAGTTATATG+TGG | + | chr3_1:13270906-13270925 | Msa0349540:intron | 15.0% |
| !! | ATGTCATATTCTTAAATTAA+AGG | + | chr3_1:13270948-13270967 | Msa0349540:intron | 15.0% |
| !!! | TTAACTGTTACTTAAATTTT+TGG | + | chr3_1:13271716-13271735 | Msa0349540:intron | 15.0% |
| !! | AAAATATAGAAATCTACTTT+CGG | - | chr3_1:13272017-13272036 | None:intergenic | 15.0% |
| !! | ATATTATTATAAAGTCATAG+AGG | - | chr3_1:13272044-13272063 | None:intergenic | 15.0% |
| !!! | TTTGTTTTTGTTAATTTTGT+TGG | + | chr3_1:13272230-13272249 | Msa0349540:intron | 15.0% |
| !!! | TTGTTTTTGTTAATTTTGTT+GGG | + | chr3_1:13272231-13272250 | Msa0349540:intron | 15.0% |
| !!! | ATATTTTCAAAGAAATTAGT+CGG | - | chr3_1:13272390-13272409 | None:intergenic | 15.0% |
| !!! | AATTTCTTTGAAAATATTGA+TGG | + | chr3_1:13272393-13272412 | Msa0349540:intron | 15.0% |
| !! | ATATTGTCAATTGATAAATA+GGG | - | chr3_1:13273026-13273045 | None:intergenic | 15.0% |
| !!! | TGTTTTTGGAATTATATTAT+AGG | + | chr3_1:13273123-13273142 | Msa0349540:intron | 15.0% |
| !! | AATGACATTTAATTAAAATG+GGG | - | chr3_1:13273231-13273250 | None:intergenic | 15.0% |
| !! | GAAATGACATTTAATTAAAA+TGG | - | chr3_1:13273233-13273252 | None:intergenic | 15.0% |
| !! | CAAATTTAATAATGACAATT+TGG | - | chr3_1:13273853-13273872 | None:intergenic | 15.0% |
| !! | CAAATTGTCATTATTAAATT+TGG | + | chr3_1:13273851-13273870 | Msa0349540:intron | 15.0% |
| !! | TTAAAAAAATCAAATTGTGA+AGG | + | chr3_1:13273965-13273984 | Msa0349540:intron | 15.0% |
| !!! | ATCTTTTTTCTTTTTAAGTC+AGG | - | chr3_1:13271094-13271113 | None:intergenic | 20.0% |
| !!! | GGTGTTTTTTGTTTTATTTT+TGG | - | chr3_1:13271130-13271149 | None:intergenic | 20.0% |
| !! | AAATCACTAAATTAGATAAG+AGG | - | chr3_1:13271433-13271452 | None:intergenic | 20.0% |
| !!! | AATTTTTGGAAAATTTGTGA+AGG | + | chr3_1:13271730-13271749 | Msa0349540:intron | 20.0% |
| !! | AAAAACAAATTAAAGGGTTA+CGG | - | chr3_1:13272219-13272238 | None:intergenic | 20.0% |
| !! | TAGTTACTATTAATAAAGCA+AGG | - | chr3_1:13272475-13272494 | None:intergenic | 20.0% |
| !! | ATAATAGAATTTCAACATCA+TGG | + | chr3_1:13272522-13272541 | Msa0349540:intron | 20.0% |
| !! | TACAAAATAAAATAACAGGA+AGG | - | chr3_1:13272720-13272739 | None:intergenic | 20.0% |
| !! | AGCATACAAAATAAAATAAC+AGG | - | chr3_1:13272724-13272743 | None:intergenic | 20.0% |
| !!! | TTTTGTATGCTTTATTTTAG+AGG | + | chr3_1:13272733-13272752 | Msa0349540:intron | 20.0% |
| !!! | AATATGTTTTAATATTCTGC+AGG | + | chr3_1:13272895-13272914 | Msa0349540:intron | 20.0% |
| !! | CATATTGTCAATTGATAAAT+AGG | - | chr3_1:13273027-13273046 | None:intergenic | 20.0% |
| !! | CTATTTATCAATTGACAATA+TGG | + | chr3_1:13273025-13273044 | Msa0349540:intron | 20.0% |
| !! | CTTGTATATGAAATGTTATT+TGG | + | chr3_1:13273435-13273454 | Msa0349540:intron | 20.0% |
| !!! | CAATTTGATTTTTTTAAGTG+TGG | - | chr3_1:13273962-13273981 | None:intergenic | 20.0% |
| !! | TATGCTTAGAAAAAAAAACT+TGG | - | chr3_1:13274126-13274145 | None:intergenic | 20.0% |
| !! | ACTACATTGAAATAATTACT+TGG | - | chr3_1:13274154-13274173 | None:intergenic | 20.0% |
| !! | GTAATTATTTCAATGTAGTT+TGG | + | chr3_1:13274155-13274174 | Msa0349540:intron | 20.0% |
| ! | AAATTGAAGTTATATGTGGT+AGG | + | chr3_1:13270910-13270929 | Msa0349540:intron | 25.0% |
| !!! | TTTTTCTTTTTAAGTCAGGT+GGG | - | chr3_1:13271090-13271109 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTTTAAGTCAGG+TGG | - | chr3_1:13271091-13271110 | None:intergenic | 25.0% |
| ! | ATTCATAGATTTCCAAATCT+AGG | + | chr3_1:13271325-13271344 | Msa0349540:intron | 25.0% |
| ! | TTCATAGATTTCCAAATCTA+GGG | + | chr3_1:13271326-13271345 | Msa0349540:intron | 25.0% |
| ! | AATTAGATAAGAGGATGAAA+AGG | - | chr3_1:13271424-13271443 | None:intergenic | 25.0% |
| !! | TCTACGTTTGATTCAATTTT+AGG | + | chr3_1:13271860-13271879 | Msa0349540:intron | 25.0% |
| ! | TGTAAAACAACAACATTGAA+AGG | - | chr3_1:13271915-13271934 | None:intergenic | 25.0% |
| !!! | CTTTTATTTACTTGCTTTGT+AGG | + | chr3_1:13272072-13272091 | Msa0349540:intron | 25.0% |
| !!! | TAGTTTGTTTCTTCTTACTA+AGG | + | chr3_1:13272280-13272299 | Msa0349540:intron | 25.0% |
| ! | ATAGCTTAATACACAAGTAA+TGG | - | chr3_1:13272498-13272517 | None:intergenic | 25.0% |
| ! | GGAAACAATATAAACCATAT+AGG | - | chr3_1:13272871-13272890 | None:intergenic | 25.0% |
| ! | AAACTTACAATGTTTATGTC+TGG | - | chr3_1:13272982-13273001 | None:intergenic | 25.0% |
| ! | TTAATTAAAATGGGGAATTG+TGG | - | chr3_1:13273223-13273242 | None:intergenic | 25.0% |
| !! | AATTCTTTTTCTTACGTTTC+AGG | + | chr3_1:13273258-13273277 | Msa0349540:intron | 25.0% |
| !! | ATTCTTTTTCTTACGTTTCA+GGG | + | chr3_1:13273259-13273278 | Msa0349540:intron | 25.0% |
| ! | TTATTTGGACTTGCATAATT+TGG | + | chr3_1:13273450-13273469 | Msa0349540:intron | 25.0% |
| !! | AGTAATGATTCTTTTCAGTT+CGG | - | chr3_1:13273626-13273645 | None:intergenic | 25.0% |
| ! | AAATTGAACAAAACTGTTGA+TGG | + | chr3_1:13273661-13273680 | Msa0349540:intron | 25.0% |
| ! | TGTAATAGTATTTGTAGTTC+TGG | - | chr3_1:13273751-13273770 | None:intergenic | 25.0% |
| ! | AGGTTAACAAATAAACAGTT+CGG | - | chr3_1:13273818-13273837 | None:intergenic | 25.0% |
| !!! | TTTTTAAGTGTGGTTTGATT+CGG | - | chr3_1:13273952-13273971 | None:intergenic | 25.0% |
| !!! | AGTGTTTTTTTCTACTAGTG+TGG | - | chr3_1:13270974-13270993 | None:intergenic | 30.0% |
| !! | GATTGTGTTTTTAAATCTGG+TGG | - | chr3_1:13271029-13271048 | None:intergenic | 30.0% |
| CCAGATTTAAAAACACAATC+CGG | + | chr3_1:13271029-13271048 | Msa0349540:intron | 30.0% | |
| TATAGTTAAAACCTTACCAC+CGG | - | chr3_1:13271051-13271070 | None:intergenic | 30.0% | |
| ATCACACATGATGAGAATAT+GGG | - | chr3_1:13271273-13271292 | None:intergenic | 30.0% | |
| AATCACACATGATGAGAATA+TGG | - | chr3_1:13271274-13271293 | None:intergenic | 30.0% | |
| AATTTACTCTTTGACGATGT+CGG | - | chr3_1:13271400-13271419 | None:intergenic | 30.0% | |
| AACAGAAACTACAGAATGAT+AGG | - | chr3_1:13271468-13271487 | None:intergenic | 30.0% | |
| TAGTTTCTGTTGTGGATTTA+GGG | + | chr3_1:13271477-13271496 | Msa0349540:intron | 30.0% | |
| ! | ATTCAATTTTAGGCCACTAA+AGG | + | chr3_1:13271870-13271889 | Msa0349540:intron | 30.0% |
| !!! | GTTGTTGTTTTACATGAAGA+TGG | + | chr3_1:13271921-13271940 | Msa0349540:intron | 30.0% |
| TTGCACAAACTAGATATGAT+AGG | - | chr3_1:13271983-13272002 | None:intergenic | 30.0% | |
| CAATAATTGCTTAGCTACAA+GGG | + | chr3_1:13272312-13272331 | Msa0349540:intron | 30.0% | |
| GTCATTAGATGATAGAATGA+CGG | + | chr3_1:13272359-13272378 | Msa0349540:intron | 30.0% | |
| TTTCAACATCATGGTCTAAT+AGG | + | chr3_1:13272531-13272550 | Msa0349540:intron | 30.0% | |
| TATTGTAGCATGCGTATAAA+AGG | + | chr3_1:13272692-13272711 | Msa0349540:intron | 30.0% | |
| ATACTTGTATGCATGTTGTT+TGG | + | chr3_1:13272767-13272786 | Msa0349540:intron | 30.0% | |
| TACAATGTTTATGTCTGGAT+TGG | - | chr3_1:13272977-13272996 | None:intergenic | 30.0% | |
| !!! | CTGAATGAGAGTTTTGTTTT+TGG | + | chr3_1:13273109-13273128 | Msa0349540:intron | 30.0% |
| ! | TTTATAGTGATAGCTTGTGA+TGG | + | chr3_1:13273169-13273188 | Msa0349540:CDS | 30.0% |
| GTACAAAATCTACCAATTGT+TGG | - | chr3_1:13273298-13273317 | None:intergenic | 30.0% | |
| TTCATATACAAGACAGTACT+AGG | - | chr3_1:13273427-13273446 | None:intergenic | 30.0% | |
| !! | GTTGTGTTACTTGAATAACA+AGG | + | chr3_1:13273565-13273584 | Msa0349540:intron | 30.0% |
| TGAATAACAAGGACTGTTTA+TGG | + | chr3_1:13273576-13273595 | Msa0349540:intron | 30.0% | |
| ! | TTAAATTTGGCTCAAATTGC+TGG | + | chr3_1:13273864-13273883 | Msa0349540:intron | 30.0% |
| ! | GTTCACAGTTCTTTTCTTTT+TGG | + | chr3_1:13274044-13274063 | Msa0349540:intron | 30.0% |
| GTTCGGTTTAACATTCAATT+TGG | + | chr3_1:13274071-13274090 | Msa0349540:intron | 30.0% | |
| !!! | ATACACTTTTTTCATCTCAC+AGG | + | chr3_1:13274207-13274226 | Msa0349540:intron | 30.0% |
| TGATAACATGACAATGATCT+TGG | + | chr3_1:13274306-13274325 | Msa0349540:CDS | 30.0% | |
| TACATGTATGCATTTAGTGT+TGG | - | chr3_1:13274450-13274469 | None:intergenic | 30.0% | |
| !! | CCGGATTGTGTTTTTAAATC+TGG | - | chr3_1:13271032-13271051 | None:intergenic | 35.0% |
| GATTTAAAAACACAATCCGG+TGG | + | chr3_1:13271032-13271051 | Msa0349540:intron | 35.0% | |
| TCTCATCATGTGTGATTCTT+CGG | + | chr3_1:13271277-13271296 | Msa0349540:intron | 35.0% | |
| TCATTCTGTAGTTTCTGTTG+TGG | + | chr3_1:13271469-13271488 | Msa0349540:intron | 35.0% | |
| GTAGTTTCTGTTGTGGATTT+AGG | + | chr3_1:13271476-13271495 | Msa0349540:intron | 35.0% | |
| TGTTGTGGATTTAGGGATTT+AGG | + | chr3_1:13271484-13271503 | Msa0349540:intron | 35.0% | |
| GTTGTGGATTTAGGGATTTA+GGG | + | chr3_1:13271485-13271504 | Msa0349540:intron | 35.0% | |
| ! | TTAGGGATTTAGGGATTTTG+TGG | + | chr3_1:13271494-13271513 | Msa0349540:intron | 35.0% |
| ACATTAACCATGACCTTTAG+TGG | - | chr3_1:13271886-13271905 | None:intergenic | 35.0% | |
| TAGGATGATGAAAAGTTACC+AGG | + | chr3_1:13272144-13272163 | Msa0349540:intron | 35.0% | |
| !! | TGTTAATTTTGTTGGGTTGC+CGG | + | chr3_1:13272238-13272257 | Msa0349540:intron | 35.0% |
| CCTTGTAGCTAAGCAATTAT+TGG | - | chr3_1:13272314-13272333 | None:intergenic | 35.0% | |
| CCAATAATTGCTTAGCTACA+AGG | + | chr3_1:13272311-13272330 | Msa0349540:intron | 35.0% | |
| TAGATGATAGAATGACGGTA+TGG | + | chr3_1:13272364-13272383 | Msa0349540:intron | 35.0% | |
| !!! | TGCTTTATTTTAGAGGCAAG+AGG | + | chr3_1:13272740-13272759 | Msa0349540:intron | 35.0% |
| !!! | TTTATTTTAGAGGCAAGAGG+AGG | + | chr3_1:13272743-13272762 | Msa0349540:intron | 35.0% |
| ! | AATGTTTATGTCTGGATTGG+CGG | - | chr3_1:13272974-13272993 | None:intergenic | 35.0% |
| TAAACTCATCTTCGTCATGA+AGG | - | chr3_1:13273153-13273172 | None:intergenic | 35.0% | |
| AACAAGGACTGTTTATGGTT+TGG | + | chr3_1:13273581-13273600 | Msa0349540:intron | 35.0% | |
| ! | TGATTCTTTTCAGTTCGGTT+TGG | - | chr3_1:13273621-13273640 | None:intergenic | 35.0% |
| CAATTTGGTACACAAAGCAA+AGG | - | chr3_1:13273838-13273857 | None:intergenic | 35.0% | |
| !! | CAGTTCTTTTCTTTTTGGTG+TGG | + | chr3_1:13274049-13274068 | Msa0349540:intron | 35.0% |
| !! | CTTTTCTTTTTGGTGTGGTT+CGG | + | chr3_1:13274054-13274073 | Msa0349540:intron | 35.0% |
| TTCACAAACTTCAGAGAGTT+TGG | - | chr3_1:13274236-13274255 | None:intergenic | 35.0% | |
| CTTCAATTGTTCTCCAATGT+TGG | - | chr3_1:13274409-13274428 | None:intergenic | 35.0% | |
| CATTGGAGAACAATTGAAGT+TGG | + | chr3_1:13274410-13274429 | Msa0349540:exon | 35.0% | |
| AAAAACACAATCCGGTGGTA+AGG | + | chr3_1:13271037-13271056 | Msa0349540:intron | 40.0% | |
| TGAAACCTGAAGAGAGAGTT+GGG | - | chr3_1:13271151-13271170 | None:intergenic | 40.0% | |
| AGAACGCAGTGAAGAAAGTT+TGG | - | chr3_1:13271199-13271218 | None:intergenic | 40.0% | |
| ACACATGATGAGAATATGGG+AGG | - | chr3_1:13271270-13271289 | None:intergenic | 40.0% | |
| CAAATCGCAAACCCTAGATT+TGG | - | chr3_1:13271340-13271359 | None:intergenic | 40.0% | |
| ! | TTAGGGATTTTGTGGATCTC+AGG | + | chr3_1:13271502-13271521 | Msa0349540:intron | 40.0% |
| GGTGAAAATGACAAGCTTAG+TGG | + | chr3_1:13271751-13271770 | Msa0349540:intron | 40.0% | |
| AAATGACAAGCTTAGTGGAG+AGG | + | chr3_1:13271756-13271775 | Msa0349540:CDS | 40.0% | |
| TTATTGGAGCTACGTACTTC+AGG | + | chr3_1:13271823-13271842 | Msa0349540:CDS | 40.0% | |
| ! | TTTTAGGCCACTAAAGGTCA+TGG | + | chr3_1:13271876-13271895 | Msa0349540:intron | 40.0% |
| ! | TTTTCATCATCCTACCTCGA+AGG | - | chr3_1:13272138-13272157 | None:intergenic | 40.0% |
| AGCAAAAACAGATCCTGTAC+CGG | - | chr3_1:13272260-13272279 | None:intergenic | 40.0% | |
| GCGAAGAAATTGCACCTATA+TGG | + | chr3_1:13272854-13272873 | Msa0349540:intron | 40.0% | |
| TTAATATTCTGCAGGTGACG+TGG | + | chr3_1:13272903-13272922 | Msa0349540:intron | 40.0% | |
| ! | TAGGGTAATCTGACTTGCAA+TGG | - | chr3_1:13273008-13273027 | None:intergenic | 40.0% |
| ! | TGATAGCTTGTGATGGCATT+TGG | + | chr3_1:13273176-13273195 | Msa0349540:CDS | 40.0% |
| TTGCCTATCAAGCCAACAAT+TGG | + | chr3_1:13273283-13273302 | Msa0349540:CDS | 40.0% | |
| !! | CTACCAATTGTTGGCTTGAT+AGG | - | chr3_1:13273289-13273308 | None:intergenic | 40.0% |
| TGTACGTCAAGAACTTCTCT+TGG | + | chr3_1:13273313-13273332 | Msa0349540:CDS | 40.0% | |
| ! | CCTTTATACCAGTTCTGGTT+CGG | - | chr3_1:13273692-13273711 | None:intergenic | 40.0% |
| TGGAACCTTTATACCAGTTC+TGG | - | chr3_1:13273697-13273716 | None:intergenic | 40.0% | |
| ACACAGACAGAACTGATGAT+TGG | - | chr3_1:13273717-13273736 | None:intergenic | 40.0% | |
| TCTGCGCATTAACTGATGTT+AGG | + | chr3_1:13273911-13273930 | Msa0349540:intron | 40.0% | |
| !! | TTTGTGAAAGAGTGCTAGAC+CGG | + | chr3_1:13274248-13274267 | Msa0349540:CDS | 40.0% |
| TCAAAAAACCAGTGCAGACT+AGG | + | chr3_1:13274335-13274354 | Msa0349540:CDS | 40.0% | |
| CAAAAAACCAGTGCAGACTA+GGG | + | chr3_1:13274336-13274355 | Msa0349540:CDS | 40.0% | |
| GAAGATGATTGTTCTTGAGC+CGG | - | chr3_1:13274364-13274383 | None:intergenic | 40.0% | |
| AGATGCATCTGAACCAACAT+TGG | + | chr3_1:13274393-13274412 | Msa0349540:CDS | 40.0% | |
| GTTTACATGACGAGACATTG+TGG | + | chr3_1:13274489-13274508 | Msa0349540:three_prime_UTR | 40.0% | |
| AAACACCCAACTCTCTCTTC+AGG | + | chr3_1:13271143-13271162 | Msa0349540:intron | 45.0% | |
| GTGAAACCTGAAGAGAGAGT+TGG | - | chr3_1:13271152-13271171 | None:intergenic | 45.0% | |
| TGGAAGGTGGAATCGAATCA+AGG | - | chr3_1:13271247-13271266 | None:intergenic | 45.0% | |
| ATGAGAATATGGGAGGTGGA+AGG | - | chr3_1:13271263-13271282 | None:intergenic | 45.0% | |
| CATGATGAGAATATGGGAGG+TGG | - | chr3_1:13271267-13271286 | None:intergenic | 45.0% | |
| !!! | GGTTTTGTTGCCATAGTTGC+AGG | + | chr3_1:13271781-13271800 | Msa0349540:CDS | 45.0% |
| ATACGCTACACCTGCAACTA+TGG | - | chr3_1:13271794-13271813 | None:intergenic | 45.0% | |
| AGCGTATGAGCCTGTGTTAT+TGG | + | chr3_1:13271807-13271826 | Msa0349540:CDS | 45.0% | |
| GTACGTAGCTCCAATAACAC+AGG | - | chr3_1:13271820-13271839 | None:intergenic | 45.0% | |
| ! | GAACAGCTCTTTTTCCTTCG+AGG | + | chr3_1:13272121-13272140 | Msa0349540:intron | 45.0% |
| ! | AGCTCTTTTTCCTTCGAGGT+AGG | + | chr3_1:13272125-13272144 | Msa0349540:intron | 45.0% |
| TGATTCTTACGCACTCTTCC+TGG | - | chr3_1:13272165-13272184 | None:intergenic | 45.0% | |
| GCTTGTGATGGCATTTGGTA+TGG | + | chr3_1:13273181-13273200 | Msa0349540:intron | 45.0% | |
| CCGAACCAGAACTGGTATAA+AGG | + | chr3_1:13273689-13273708 | Msa0349540:intron | 45.0% | |
| TGCTGGCCATCACAAGTTAA+AGG | + | chr3_1:13273881-13273900 | Msa0349540:intron | 45.0% | |
| !! | CGAGTGCCTTTAACTTGTGA+TGG | - | chr3_1:13273890-13273909 | None:intergenic | 45.0% |
| !! | GTGTGGTTTGATTCGGACTT+TGG | - | chr3_1:13273945-13273964 | None:intergenic | 45.0% |
| GTTCATGAACTGAACTGAGC+TGG | - | chr3_1:13274023-13274042 | None:intergenic | 45.0% | |
| !!! | TTTTTTAATTTTTAGATAAT+TGG | + | chr3_1:13271683-13271702 | Msa0349540:intron | 5.0% |
| GGTGGAATCGAATCAAGGTG+CGG | - | chr3_1:13271242-13271261 | None:intergenic | 50.0% | |
| AGAATATGGGAGGTGGAAGG+TGG | - | chr3_1:13271260-13271279 | None:intergenic | 50.0% | |
| TGACAAGCTTAGTGGAGAGG+AGG | + | chr3_1:13271759-13271778 | Msa0349540:CDS | 50.0% | |
| GACAAGCTTAGTGGAGAGGA+GGG | + | chr3_1:13271760-13271779 | Msa0349540:CDS | 50.0% | |
| TGGAGCTACGTACTTCAGGT+TGG | + | chr3_1:13271827-13271846 | Msa0349540:intron | 50.0% | |
| !! | TTTTGTTGGGTTGCCGGTAC+AGG | + | chr3_1:13272244-13272263 | Msa0349540:intron | 50.0% |
| ! | TGGTTTGTCCGAACCAGAAC+TGG | + | chr3_1:13273681-13273700 | Msa0349540:intron | 50.0% |
| !! | AAGAGTGCTAGACCGGTGTT+TGG | + | chr3_1:13274255-13274274 | Msa0349540:CDS | 50.0% |
| CCATCACCAACAGCCAAAGA+TGG | - | chr3_1:13274283-13274302 | None:intergenic | 50.0% | |
| ! | CCATCTTTGGCTGTTGGTGA+TGG | + | chr3_1:13274280-13274299 | Msa0349540:CDS | 50.0% |
| AATCGAATCAAGGTGCGGCG+CGG | - | chr3_1:13271237-13271256 | None:intergenic | 55.0% | |
| CCAAAGATGGCGCCAAACAC+CGG | - | chr3_1:13274270-13274289 | None:intergenic | 55.0% | |
| TTGGCGCCATCTTTGGCTGT+TGG | + | chr3_1:13274274-13274293 | Msa0349540:CDS | 55.0% | |
| CCGGTGTTTGGCGCCATCTT+TGG | + | chr3_1:13274267-13274286 | Msa0349540:CDS | 60.0% | |
| ACCAGTGCAGACTAGGGCAC+CGG | + | chr3_1:13274342-13274361 | Msa0349540:CDS | 60.0% | |
| AATCAAGGTGCGGCGCGGCT+TGG | - | chr3_1:13271232-13271251 | None:intergenic | 65.0% | |
| GCCGGTGCCCTAGTCTGCAC+TGG | - | chr3_1:13274346-13274365 | None:intergenic | 70.0% | |
| ! | CAAGGTGCGGCGCGGCTTGG+TGG | - | chr3_1:13271229-13271248 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 13270865 | 13274590 | 13270865 | ID=Msa0349540;Name=Msa0349540 |
| chr3_1 | mRNA | 13270865 | 13274590 | 13270865 | ID=Msa0349540-mRNA-1;Parent=Msa0349540;Name=Msa0349540-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.66|0.85|0.85|0.83|0.71|7|164|185 |
| chr3_1 | exon | 13270865 | 13270872 | 13270865 | ID=Msa0349540-mRNA-1:exon:3362;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13271552 | 13271625 | 13271552 | ID=Msa0349540-mRNA-1:exon:3363;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13271752 | 13271844 | 13271752 | ID=Msa0349540-mRNA-1:exon:3364;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13272917 | 13272993 | 13272917 | ID=Msa0349540-mRNA-1:exon:3365;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13273145 | 13273197 | 13273145 | ID=Msa0349540-mRNA-1:exon:3366;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13273280 | 13273334 | 13273280 | ID=Msa0349540-mRNA-1:exon:3367;Parent=Msa0349540-mRNA-1 |
| chr3_1 | exon | 13274229 | 13274590 | 13274229 | ID=Msa0349540-mRNA-1:exon:3368;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13270865 | 13270872 | 13270865 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13271552 | 13271625 | 13271552 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13271752 | 13271844 | 13271752 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13272917 | 13272993 | 13272917 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13273145 | 13273197 | 13273145 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13273280 | 13273334 | 13273280 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | CDS | 13274229 | 13274426 | 13274229 | ID=Msa0349540-mRNA-1:cds;Parent=Msa0349540-mRNA-1 |
| chr3_1 | three_prime_UTR | 13274427 | 13274590 | 13274427 | ID=Msa0349540-mRNA-1:three_prime_utr;Parent=Msa0349540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
