Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019550 | XP_039683735.1 | 82.073 | 463 | 33 | 1 | 1 | 413 | 1 | 463 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019550 | G7L060 | 80.169 | 474 | 33 | 2 | 1 | 413 | 1 | 474 | 0.0 | 763 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604290 | Msa1019550 | 0.801850 | 7.413083e-49 | -8.615850e-47 |
| Msa1019550 | Msa1029050 | 0.802561 | 5.291378e-49 | -8.615850e-47 |
| Msa1019550 | Msa1059150 | 0.870650 | 1.243119e-66 | -8.615850e-47 |
| Msa1019550 | Msa1150090 | 0.985991 | 2.550057e-165 | -8.615850e-47 |
| Msa1019550 | Msa1171210 | 0.995230 | 3.033177e-214 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019550 | MtrunA17_Chr7g0235041 | 80.169 | 474 | 33 | 2 | 1 | 413 | 1 | 474 | 0.0 | 763 |
| Msa1019550 | MtrunA17_Chr7g0235031 | 64.565 | 460 | 105 | 4 | 1 | 403 | 1 | 459 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1019550 | AT4G13030.2 | 39.481 | 385 | 183 | 14 | 68 | 413 | 103 | 476 | 7.47e-73 | 236 |
| Msa1019550 | AT4G13030.1 | 39.481 | 385 | 183 | 14 | 68 | 413 | 105 | 478 | 8.92e-73 | 236 |
| Msa1019550 | AT4G13030.3 | 39.481 | 385 | 183 | 14 | 68 | 413 | 106 | 479 | 9.15e-73 | 236 |
Find 96 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCTTGGGTTCATTTAT+AGG | 0.161868 | 7_1:+41305795 | None:intergenic |
| CTTTATCTTGGGTTCCCTTT+TGG | 0.172518 | 7_1:+41305752 | None:intergenic |
| AGCTCGTGTCCGTGTATATT+TGG | 0.194089 | 7_1:-41306513 | Msa1019550:CDS |
| TCTTATTAGGTAAGTTCTTT+AGG | 0.238635 | 7_1:-41305437 | Msa1019550:three_prime_UTR |
| GAAAAGCAATGTTATGAATA+AGG | 0.244087 | 7_1:-41306265 | Msa1019550:intron |
| TCTGCTACTGATTCTGTTGT+TGG | 0.274024 | 7_1:-41309487 | Msa1019550:CDS |
| CATCATTGTTATAATGTAAA+TGG | 0.280008 | 7_1:+41305229 | None:intergenic |
| ATGTAACCCAGTTCTTTAAA+AGG | 0.290049 | 7_1:+41305395 | None:intergenic |
| GAGAAGAATGAATTAGATTT+CGG | 0.306369 | 7_1:-41309541 | Msa1019550:CDS |
| GCTCGTGTCCGTGTATATTT+GGG | 0.308632 | 7_1:-41306512 | Msa1019550:CDS |
| ATTTAATATAATACACATAA+TGG | 0.316117 | 7_1:+41305192 | None:intergenic |
| CTGGTTGGTCCAAGTGGATC+TGG | 0.322073 | 7_1:-41308593 | Msa1019550:CDS |
| CTGAATGTGATTGAAAATTC+TGG | 0.329930 | 7_1:-41307994 | Msa1019550:CDS |
| AAAACTGAAAGTTCCTAAAA+AGG | 0.336316 | 7_1:-41305724 | Msa1019550:CDS |
| TATGTTATATGTGTCCTTAA+TGG | 0.342707 | 7_1:-41308027 | Msa1019550:CDS |
| TTTATAGGACCTTCCACATT+TGG | 0.344558 | 7_1:+41305810 | None:intergenic |
| CAGATTTGGACACTCTATCT+TGG | 0.345258 | 7_1:+41305782 | None:intergenic |
| AGGTGAAAAGAGTTGTAATT+AGG | 0.349852 | 7_1:-41305612 | Msa1019550:three_prime_UTR |
| ATAATAAAATGCTCAAGAAT+TGG | 0.359391 | 7_1:-41308256 | Msa1019550:CDS |
| TGAAAATTCTGGTGGTGCTT+TGG | 0.359422 | 7_1:-41307983 | Msa1019550:CDS |
| CAAGATAGAGTGTCCAAATC+TGG | 0.362124 | 7_1:-41305781 | Msa1019550:CDS |
| CAGATAGAATTTGAGTCTCT+TGG | 0.362225 | 7_1:+41308320 | None:intergenic |
| CATGATACTTGTGCTCTTGC+AGG | 0.364244 | 7_1:+41308515 | None:intergenic |
| CAGGGATAGTCGAGGTTTGC+AGG | 0.366338 | 7_1:-41309584 | Msa1019550:CDS |
| ATGTGTCCTTAATGGTGTTT+CGG | 0.368074 | 7_1:-41308019 | Msa1019550:CDS |
| TCAGAACCGAAACACCATTA+AGG | 0.375881 | 7_1:+41308013 | None:intergenic |
| AGATTTGGACACTCTATCTT+GGG | 0.383689 | 7_1:+41305783 | None:intergenic |
| CTAGTATATGATCTCTGTTA+TGG | 0.413746 | 7_1:-41305639 | Msa1019550:three_prime_UTR |
| GAGCTCGGTCAGAGAGTGAT+AGG | 0.419869 | 7_1:+41306531 | None:intergenic |
| TACCTTTAAAAGACAGGAAT+GGG | 0.433374 | 7_1:+41307920 | None:intergenic |
| CAAATTCTCTATCAGGGGTA+TGG | 0.434045 | 7_1:-41308130 | Msa1019550:intron |
| CTAGCAATAGGATTTGTCAT+TGG | 0.434697 | 7_1:-41305921 | Msa1019550:CDS |
| AGATAGAGTGGCATAAAATT+CGG | 0.438343 | 7_1:-41305695 | Msa1019550:CDS |
| GTATCAGCAAAATCATGAAT+AGG | 0.443249 | 7_1:+41305943 | None:intergenic |
| CTACTGCAAGTGTGCGGTTG+AGG | 0.446262 | 7_1:+41305852 | None:intergenic |
| GGCATAAAATTCGGCACATA+TGG | 0.446865 | 7_1:-41305686 | Msa1019550:CDS |
| TCCACTGATTCTAACCATAC+TGG | 0.457218 | 7_1:-41310660 | Msa1019550:intron |
| CTCAAGAATTGGATGACAAA+AGG | 0.457854 | 7_1:-41308245 | Msa1019550:CDS |
| CTTCTTCTCCACCCACTCCC+AGG | 0.466904 | 7_1:-41310529 | Msa1019550:intron |
| TGAGAGTGATGGTGGATTGT+AGG | 0.470316 | 7_1:-41305357 | Msa1019550:three_prime_UTR |
| ATCATCATCATCATTCATCA+TGG | 0.473117 | 7_1:-41310691 | Msa1019550:exon |
| CTGGGAGTGGGTGGAGAAGA+AGG | 0.473521 | 7_1:+41310530 | None:intergenic |
| AGAAAATACCTTTAAAAGAC+AGG | 0.478362 | 7_1:+41307914 | None:intergenic |
| GTGACTGAATCTGCCGTAGT+TGG | 0.478664 | 7_1:-41306333 | Msa1019550:CDS |
| CAAATCTGGAAGTTCCCAAA+AGG | 0.478710 | 7_1:-41305767 | Msa1019550:CDS |
| GAGTTGTAATTAGGAGTACT+TGG | 0.485433 | 7_1:-41305603 | Msa1019550:three_prime_UTR |
| AAGCTTAAAGGTGACAAGAA+AGG | 0.490372 | 7_1:-41308081 | Msa1019550:CDS |
| AAATTCTGGTGGTGCTTTGG+AGG | 0.492221 | 7_1:-41307980 | Msa1019550:CDS |
| AGAGACAACATGCCTCATAC+TGG | 0.492904 | 7_1:-41308612 | Msa1019550:CDS |
| CCATGAGTTAAAACAAGTAC+AGG | 0.493295 | 7_1:+41306560 | None:intergenic |
| GATAATTCACTTGGAGGGAG+TGG | 0.495377 | 7_1:-41308371 | Msa1019550:CDS |
| GTCATGGAGAGCTTGTTGCC+AGG | 0.504453 | 7_1:-41308217 | Msa1019550:intron |
| ATGATCTCTGTTATGGAGCT+AGG | 0.505275 | 7_1:-41305632 | Msa1019550:three_prime_UTR |
| CTGGTGGTGCTTTGGAGGCA+CGG | 0.508561 | 7_1:-41307975 | Msa1019550:CDS |
| ACCAGTATGGTTAGAATCAG+TGG | 0.509955 | 7_1:+41310659 | None:intergenic |
| GTATGATACACGTAGTTTGT+CGG | 0.510788 | 7_1:-41308294 | Msa1019550:CDS |
| TGGTGGATTGTAGGACTCCT+TGG | 0.519757 | 7_1:-41305348 | Msa1019550:three_prime_UTR |
| CTGATTCTGTTGTTGGTGAA+AGG | 0.519978 | 7_1:-41309480 | Msa1019550:CDS |
| CACTTGGACCAACCAGTATG+AGG | 0.522542 | 7_1:+41308600 | None:intergenic |
| ATGGCAGATAATTCACTTGG+AGG | 0.534040 | 7_1:-41308377 | Msa1019550:intron |
| TCACGACACGCGTCCAAATG+TGG | 0.541487 | 7_1:-41305823 | Msa1019550:CDS |
| AATATACACGGACACGAGCT+CGG | 0.542671 | 7_1:+41306516 | None:intergenic |
| ATACCTTTAAAAGACAGGAA+TGG | 0.550299 | 7_1:+41307919 | None:intergenic |
| TTGATGGCAGATAATTCACT+TGG | 0.556082 | 7_1:-41308380 | Msa1019550:intron |
| AAATCTGGAAGTTCCCAAAA+GGG | 0.558483 | 7_1:-41305766 | Msa1019550:CDS |
| TGCTTTGGTAGTTCTGTACA+CGG | 0.562614 | 7_1:-41305527 | Msa1019550:three_prime_UTR |
| TGGTTGGTCCAAGTGGATCT+GGG | 0.569380 | 7_1:-41308592 | Msa1019550:CDS |
| CTGCAGTGTTGTCAATTCAA+TGG | 0.574835 | 7_1:+41305577 | None:intergenic |
| CTACGGCAGATTCAGTCACT+AGG | 0.577978 | 7_1:+41306337 | None:intergenic |
| TGGCAGATAATTCACTTGGA+GGG | 0.579251 | 7_1:-41308376 | Msa1019550:intron |
| CTCATACTGGTTGGTCCAAG+TGG | 0.588327 | 7_1:-41308599 | Msa1019550:CDS |
| ATGACAAAAGGTGTTCGTCA+TGG | 0.590159 | 7_1:-41308233 | Msa1019550:CDS |
| TGAGTATATGAGAGTGATGG+TGG | 0.592459 | 7_1:-41305365 | Msa1019550:three_prime_UTR |
| TCATCATCATCATTCATCAT+GGG | 0.597108 | 7_1:-41310690 | Msa1019550:exon |
| AAAAGGAAGCCAAGATAGAG+TGG | 0.597198 | 7_1:-41305707 | Msa1019550:CDS |
| TGATGATATATACCTGGGAG+TGG | 0.598814 | 7_1:+41310517 | None:intergenic |
| TCATCATTCATCATGGGCGG+TGG | 0.599969 | 7_1:-41310684 | Msa1019550:exon |
| ATATCTTAACATTCCAACTA+CGG | 0.604056 | 7_1:+41306320 | None:intergenic |
| GAGGATTCTGTTTGTGATCG+TGG | 0.609511 | 7_1:+41310806 | None:intergenic |
| GATATATACCTGGGAGTGGG+TGG | 0.609726 | 7_1:+41310521 | None:intergenic |
| CTCGTGTCCGTGTATATTTG+GGG | 0.610233 | 7_1:-41306511 | Msa1019550:CDS |
| CTGTTGAGCGACATAAGTGA+TGG | 0.622726 | 7_1:+41305881 | None:intergenic |
| ACAACATGCCTCATACTGGT+TGG | 0.629494 | 7_1:-41308608 | Msa1019550:CDS |
| TAATGTTTCAGGGATAGTCG+AGG | 0.642098 | 7_1:-41309592 | Msa1019550:intron |
| AGACGTTAGTGAAGAAAGTG+TGG | 0.650856 | 7_1:-41309518 | Msa1019550:CDS |
| CTAGTAAGTACTGGTAACCA+AGG | 0.651341 | 7_1:+41305331 | None:intergenic |
| GACACGCGTCCAAATGTGGA+AGG | 0.661616 | 7_1:-41305819 | Msa1019550:CDS |
| TCATCATCATTCATCATGGG+CGG | 0.664119 | 7_1:-41310687 | Msa1019550:exon |
| TGTACAGAACTACCAAAGCA+AGG | 0.665366 | 7_1:+41305530 | None:intergenic |
| GTTGGTGAAAGGAAGAGACT+TGG | 0.667250 | 7_1:-41309469 | Msa1019550:intron |
| TCGTGTCCGTGTATATTTGG+GGG | 0.675383 | 7_1:-41306510 | Msa1019550:CDS |
| AACTGAGTATATGAGAGTGA+TGG | 0.683513 | 7_1:-41305368 | Msa1019550:three_prime_UTR |
| ACTTCTCTACTGCAAGTGTG+CGG | 0.699580 | 7_1:+41305846 | None:intergenic |
| TTGGAATCATATACTCACGA+AGG | 0.702077 | 7_1:+41308339 | None:intergenic |
| AATGTGATTGAAAATTCTGG+TGG | 0.703440 | 7_1:-41307991 | Msa1019550:CDS |
| GATGATATATACCTGGGAGT+GGG | 0.703785 | 7_1:+41310518 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAGAGTTAT+CGG | - | chr7_1:41305187-41305206 | Msa1019550:three_prime_UTR | 10.0% |
| !! | ATAAGATTCAATATAATTAT+GGG | - | chr7_1:41305705-41305724 | Msa1019550:CDS | 10.0% |
| !! | TTAATTGAAAAAATGAATTT+AGG | - | chr7_1:41306927-41306946 | Msa1019550:intron | 10.0% |
| !!! | AACTTTTAAATTAAAGTTAT+AGG | - | chr7_1:41308339-41308358 | Msa1019550:CDS | 10.0% |
| !! | ATTTAATATAATACACATAA+TGG | + | chr7_1:41310855-41310874 | None:intergenic | 10.0% |
| !!! | GATAACTCTTTTTTATTTTT+TGG | + | chr7_1:41305188-41305207 | None:intergenic | 15.0% |
| !!! | AAATATTTTTGGAAAAAGAA+AGG | + | chr7_1:41305584-41305603 | None:intergenic | 15.0% |
| !!! | TGATTTTTTCAAATTATAAG+CGG | + | chr7_1:41305665-41305684 | None:intergenic | 15.0% |
| !! | CATAAGATTCAATATAATTA+TGG | - | chr7_1:41305704-41305723 | Msa1019550:CDS | 15.0% |
| !!! | TATTTTTGCACAAATTTATT+TGG | + | chr7_1:41305796-41305815 | None:intergenic | 15.0% |
| !! | ATACATTAAAAAACAGAAAT+AGG | + | chr7_1:41305840-41305859 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTTTATTGTCA+TGG | - | chr7_1:41307042-41307061 | Msa1019550:intron | 15.0% |
| !!! | TGATATTAACTTGAATAATT+AGG | - | chr7_1:41307575-41307594 | Msa1019550:intron | 15.0% |
| !! | ACTAGTTATCATAAAATAAA+CGG | + | chr7_1:41308258-41308277 | None:intergenic | 15.0% |
| !! | TTAAATTAAAGTTATAGGAA+TGG | - | chr7_1:41308344-41308363 | Msa1019550:CDS | 15.0% |
| !!! | TATATTAAACGTTGTATTTT+AGG | + | chr7_1:41308374-41308393 | None:intergenic | 15.0% |
| !!! | AATCTAAAATCTTATTAGTT+TGG | - | chr7_1:41308491-41308510 | Msa1019550:intron | 15.0% |
| !! | TTAATGTATATGTATGTATT+AGG | - | chr7_1:41308891-41308910 | Msa1019550:intron | 15.0% |
| !! | TATATAAATGTAAACAATTC+CGG | - | chr7_1:41309147-41309166 | Msa1019550:intron | 15.0% |
| !!! | AGTAAAATTTGCTTATATTT+TGG | - | chr7_1:41309920-41309939 | Msa1019550:intron | 15.0% |
| !! | AACAATTAAAAAAATCAATG+AGG | + | chr7_1:41310050-41310069 | None:intergenic | 15.0% |
| !!! | TCAATTAACTTTTTCTTATT+AGG | - | chr7_1:41310594-41310613 | Msa1019550:intron | 15.0% |
| !! | TCTTTCAAAAAAAAAAAAGT+TGG | + | chr7_1:41310741-41310760 | None:intergenic | 15.0% |
| !!! | TATTTTGAACTGAATTCAAT+GGG | + | chr7_1:41305318-41305337 | None:intergenic | 20.0% |
| !! | AGAGTATATGATTAATCATT+AGG | + | chr7_1:41305475-41305494 | None:intergenic | 20.0% |
| !!! | TGATAGGTTGAAAATATTTT+TGG | + | chr7_1:41305595-41305614 | None:intergenic | 20.0% |
| !! | AAAAATAGATTGTATTTGGA+GGG | - | chr7_1:41305809-41305828 | Msa1019550:CDS | 20.0% |
| !!! | TTTTTAAGATTTTTTGCTAC+TGG | - | chr7_1:41305870-41305889 | Msa1019550:CDS | 20.0% |
| !! | TTGCAATAAAAATAGGTTTA+GGG | + | chr7_1:41306090-41306109 | None:intergenic | 20.0% |
| !! | TTTGCAATAAAAATAGGTTT+AGG | + | chr7_1:41306091-41306110 | None:intergenic | 20.0% |
| !! | ATGATGATTTATAATGTTTC+AGG | - | chr7_1:41306441-41306460 | Msa1019550:intron | 20.0% |
| !! | TGATGATTTATAATGTTTCA+GGG | - | chr7_1:41306442-41306461 | Msa1019550:intron | 20.0% |
| !! | GCTTAATATTAAGACATATA+TGG | + | chr7_1:41306728-41306747 | None:intergenic | 20.0% |
| !! | AATGAACAAAGATATATAGA+TGG | + | chr7_1:41307614-41307633 | None:intergenic | 20.0% |
| !! | ATAATAAAATGCTCAAGAAT+TGG | - | chr7_1:41307788-41307807 | Msa1019550:intron | 20.0% |
| !! | AGTACTTAAATATATAAACC+TGG | + | chr7_1:41307848-41307867 | None:intergenic | 20.0% |
| !!! | ATTTTACAAATTCTCTATCA+GGG | - | chr7_1:41307908-41307927 | Msa1019550:intron | 20.0% |
| !!! | AGTAAAAATTTGAAGCTTAA+AGG | - | chr7_1:41307951-41307970 | Msa1019550:CDS | 20.0% |
| !! | TTAAAAACTTTCATGAAGAA+TGG | + | chr7_1:41308730-41308749 | None:intergenic | 20.0% |
| !! | GGAATTGTTTACATTTATAT+AGG | + | chr7_1:41309148-41309167 | None:intergenic | 20.0% |
| !! | CATTGAAATAATTGAAAGAA+GGG | + | chr7_1:41309197-41309216 | None:intergenic | 20.0% |
| !! | ACATTGAAATAATTGAAAGA+AGG | + | chr7_1:41309198-41309217 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTTCAATGAAA+GGG | + | chr7_1:41309630-41309649 | None:intergenic | 20.0% |
| !! | ATAAAAGAATGTTCAATGAA+AGG | + | chr7_1:41309631-41309650 | None:intergenic | 20.0% |
| !! | AGCTTGTAACTATAAATTTA+AGG | + | chr7_1:41309817-41309836 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAGAACTTACT+AGG | - | chr7_1:41310748-41310767 | Msa1019550:five_prime_UTR | 20.0% |
| !!! | TTTTTTGAAAGAACTTACTA+GGG | - | chr7_1:41310749-41310768 | Msa1019550:five_prime_UTR | 20.0% |
| !!! | AACAAATAACTACTTTTAGT+TGG | + | chr7_1:41310775-41310794 | None:intergenic | 20.0% |
| !! | CATCATTGTTATAATGTAAA+TGG | + | chr7_1:41310818-41310837 | None:intergenic | 20.0% |
| ! | TAAGAACGAACAAAAAAATG+AGG | + | chr7_1:41305260-41305279 | None:intergenic | 25.0% |
| !!! | CTATTTTGAACTGAATTCAA+TGG | + | chr7_1:41305319-41305338 | None:intergenic | 25.0% |
| ! | AAGAAAAACAAATACCAGTA+TGG | + | chr7_1:41305401-41305420 | None:intergenic | 25.0% |
| ! | AATTTATTTGGTTGAAAGCA+CGG | + | chr7_1:41305784-41305803 | None:intergenic | 25.0% |
| ! | GTGCAAAAATAGATTGTATT+TGG | - | chr7_1:41305805-41305824 | Msa1019550:CDS | 25.0% |
| ! | CAAAAATAGATTGTATTTGG+AGG | - | chr7_1:41305808-41305827 | Msa1019550:CDS | 25.0% |
| !! | TGGCTTTTATATTCTTAGTT+TGG | - | chr7_1:41305894-41305913 | Msa1019550:CDS | 25.0% |
| ! | TCTAAACTTTAGTATACGTT+TGG | - | chr7_1:41306133-41306152 | Msa1019550:intron | 25.0% |
| !! | TTATGTGAAACATGTTTTGT+AGG | - | chr7_1:41306332-41306351 | Msa1019550:CDS | 25.0% |
| ! | ACTATAGGATCAAGAAATAA+AGG | + | chr7_1:41306394-41306413 | None:intergenic | 25.0% |
| ! | GAGAAGAATGAATTAGATTT+CGG | - | chr7_1:41306503-41306522 | Msa1019550:CDS | 25.0% |
| ! | AAACCAAAGAAAAAATCTTG+AGG | - | chr7_1:41306660-41306679 | Msa1019550:intron | 25.0% |
| !! | AAAGGGTATATTATTATCTG+AGG | - | chr7_1:41306799-41306818 | Msa1019550:intron | 25.0% |
| !! | AAAAAATGAATTTAGGACTC+AGG | - | chr7_1:41306934-41306953 | Msa1019550:intron | 25.0% |
| !!! | GCTTTTTCTTACATAAATCA+AGG | + | chr7_1:41306991-41307010 | None:intergenic | 25.0% |
| ! | AAGTCATCAAAACTAATCTA+GGG | + | chr7_1:41307117-41307136 | None:intergenic | 25.0% |
| ! | TAAGTCATCAAAACTAATCT+AGG | + | chr7_1:41307118-41307137 | None:intergenic | 25.0% |
| ! | TCAGTGTGTAATTGAAATTA+TGG | - | chr7_1:41307241-41307260 | Msa1019550:intron | 25.0% |
| ! | AACAAAGATATATAGATGGA+AGG | + | chr7_1:41307610-41307629 | None:intergenic | 25.0% |
| ! | CCATCAAAAGATAAATGTAA+TGG | + | chr7_1:41307651-41307670 | None:intergenic | 25.0% |
| !! | CCATTACATTTATCTTTTGA+TGG | - | chr7_1:41307648-41307667 | Msa1019550:intron | 25.0% |
| !! | CATTTTACAAATTCTCTATC+AGG | - | chr7_1:41307907-41307926 | Msa1019550:intron | 25.0% |
| !! | TTTTACAAATTCTCTATCAG+GGG | - | chr7_1:41307909-41307928 | Msa1019550:intron | 25.0% |
| !! | ATTAACTTTTCTTCGTTTAC+TGG | + | chr7_1:41307997-41308016 | None:intergenic | 25.0% |
| ! | TATGTTATATGTGTCCTTAA+TGG | - | chr7_1:41308017-41308036 | Msa1019550:CDS | 25.0% |
| !! | AGAAAATACCTTTAAAAGAC+AGG | + | chr7_1:41308133-41308152 | None:intergenic | 25.0% |
| !!! | TGTCTTTTAAAGGTATTTTC+TGG | - | chr7_1:41308132-41308151 | Msa1019550:intron | 25.0% |
| ! | GCAAATGAAAAAGAAAAAAG+TGG | + | chr7_1:41308210-41308229 | None:intergenic | 25.0% |
| !! | TTTTCTCTTTCACATTTTTC+AGG | + | chr7_1:41308924-41308943 | None:intergenic | 25.0% |
| ! | ACGTTTAATTAACAGAATGT+TGG | - | chr7_1:41308954-41308973 | Msa1019550:intron | 25.0% |
| ! | CGTTTAATTAACAGAATGTT+GGG | - | chr7_1:41308955-41308974 | Msa1019550:intron | 25.0% |
| ! | ATGAGAAAGATAGAAATACA+GGG | + | chr7_1:41309005-41309024 | None:intergenic | 25.0% |
| ! | AATGAGAAAGATAGAAATAC+AGG | + | chr7_1:41309006-41309025 | None:intergenic | 25.0% |
| ! | TTTACAGTATAACTATCGAA+AGG | + | chr7_1:41309035-41309054 | None:intergenic | 25.0% |
| ! | ACCAAAATTCACTCTATTAT+CGG | + | chr7_1:41309090-41309109 | None:intergenic | 25.0% |
| ! | AATATTCATGTCAAAGAAAC+TGG | + | chr7_1:41309119-41309138 | None:intergenic | 25.0% |
| ! | AGAGACTCAATTAGATAAAT+TGG | - | chr7_1:41309295-41309314 | Msa1019550:intron | 25.0% |
| ! | GAGACTCAATTAGATAAATT+GGG | - | chr7_1:41309296-41309315 | Msa1019550:intron | 25.0% |
| ! | AATTGGGAGAAATAGTAAAA+AGG | - | chr7_1:41309312-41309331 | Msa1019550:intron | 25.0% |
| ! | AAATTCAGAAGTTTGTATGA+AGG | - | chr7_1:41309346-41309365 | Msa1019550:intron | 25.0% |
| ! | AATTCAGAAGTTTGTATGAA+GGG | - | chr7_1:41309347-41309366 | Msa1019550:intron | 25.0% |
| ! | ATATCTTAACATTCCAACTA+CGG | + | chr7_1:41309727-41309746 | None:intergenic | 25.0% |
| ! | GAAAAGCAATGTTATGAATA+AGG | - | chr7_1:41309779-41309798 | Msa1019550:intron | 25.0% |
| ! | AAGCAAAAAATGTAGTTTGA+TGG | + | chr7_1:41309947-41309966 | None:intergenic | 25.0% |
| !!! | TTTTTAGGAACTTTCAGTTT+TGG | + | chr7_1:41310321-41310340 | None:intergenic | 25.0% |
| ! | AAAACTGAAAGTTCCTAAAA+AGG | - | chr7_1:41310320-41310339 | Msa1019550:intron | 25.0% |
| ! | TCTAAAAAGACTTTCTACTT+TGG | + | chr7_1:41310550-41310569 | None:intergenic | 25.0% |
| ! | TCTTATTAGGTAAGTTCTTT+AGG | - | chr7_1:41310607-41310626 | Msa1019550:intron | 25.0% |
| ATCATCATCATCATTCATCA+TGG | - | chr7_1:41305353-41305372 | Msa1019550:three_prime_UTR | 30.0% | |
| TCATCATCATCATTCATCAT+GGG | - | chr7_1:41305354-41305373 | Msa1019550:three_prime_UTR | 30.0% | |
| AACACAAGAATTCATCAAAG+AGG | + | chr7_1:41305449-41305468 | None:intergenic | 30.0% | |
| AAGGAAAGTGAAAATCTTCA+TGG | + | chr7_1:41305498-41305517 | None:intergenic | 30.0% | |
| ATCAACACTAAGTTTCTGTT+AGG | + | chr7_1:41306280-41306299 | None:intergenic | 30.0% | |
| !! | CTTAGTGTTGATATAATGCA+TGG | - | chr7_1:41306288-41306307 | Msa1019550:CDS | 30.0% |
| ! | TGATATAATGCATGGCATTT+TGG | - | chr7_1:41306296-41306315 | Msa1019550:CDS | 30.0% |
| TCAATTCATCATAACTTTGC+AGG | + | chr7_1:41306616-41306635 | None:intergenic | 30.0% | |
| ! | TGAATTGAAGATTGATAGCA+AGG | - | chr7_1:41306628-41306647 | Msa1019550:intron | 30.0% |
| !!! | ACACCTCAAGATTTTTTCTT+TGG | + | chr7_1:41306666-41306685 | None:intergenic | 30.0% |
| ATATTAAGCGAAAGCTTCAA+AGG | - | chr7_1:41306739-41306758 | Msa1019550:intron | 30.0% | |
| TTCAGCTTTCAAACATTGAA+AGG | - | chr7_1:41306781-41306800 | Msa1019550:intron | 30.0% | |
| TCAGCTTTCAAACATTGAAA+GGG | - | chr7_1:41306782-41306801 | Msa1019550:intron | 30.0% | |
| AGGTCAAAAACATGAATTTC+AGG | - | chr7_1:41306954-41306973 | Msa1019550:intron | 30.0% | |
| TGTCATGGAAATAGTATTAC+AGG | - | chr7_1:41307057-41307076 | Msa1019550:intron | 30.0% | |
| GTCATGGAAATAGTATTACA+GGG | - | chr7_1:41307058-41307077 | Msa1019550:intron | 30.0% | |
| TCATGGAAATAGTATTACAG+GGG | - | chr7_1:41307059-41307078 | Msa1019550:intron | 30.0% | |
| ! | AAATTTTGTATGTGAGCATG+TGG | - | chr7_1:41307298-41307317 | Msa1019550:intron | 30.0% |
| AGAATATGAAGTTTATCGTG+TGG | - | chr7_1:41307332-41307351 | Msa1019550:intron | 30.0% | |
| TATCTTTGTTCATTGACCTA+AGG | - | chr7_1:41307620-41307639 | Msa1019550:intron | 30.0% | |
| !! | AAATGTAATGGATACTCCTT+AGG | + | chr7_1:41307639-41307658 | None:intergenic | 30.0% |
| CTGAATGTGATTGAAAATTC+TGG | - | chr7_1:41308050-41308069 | Msa1019550:CDS | 30.0% | |
| AATGTGATTGAAAATTCTGG+TGG | - | chr7_1:41308053-41308072 | Msa1019550:CDS | 30.0% | |
| ! | TACCTTTAAAAGACAGGAAT+GGG | + | chr7_1:41308127-41308146 | None:intergenic | 30.0% |
| ! | ATACCTTTAAAAGACAGGAA+TGG | + | chr7_1:41308128-41308147 | None:intergenic | 30.0% |
| CAGATATAATGTGACACATA+TGG | - | chr7_1:41308305-41308324 | Msa1019550:CDS | 30.0% | |
| ATATAATGTGACACATATGG+AGG | - | chr7_1:41308308-41308327 | Msa1019550:CDS | 30.0% | |
| TATAATGTGACACATATGGA+GGG | - | chr7_1:41308309-41308328 | Msa1019550:CDS | 30.0% | |
| TTGTATAATTGACCTATGCT+TGG | - | chr7_1:41308557-41308576 | Msa1019550:CDS | 30.0% | |
| ATCTTAGTGTTAACGTTGAA+CGG | - | chr7_1:41308580-41308599 | Msa1019550:CDS | 30.0% | |
| AAACTATCCTACCTTGTATT+CGG | - | chr7_1:41308674-41308693 | Msa1019550:intron | 30.0% | |
| AAGGAAATAACACAAGTGTA+TGG | + | chr7_1:41308783-41308802 | None:intergenic | 30.0% | |
| !!! | CACTTGTGTTATTTCCTTTT+AGG | - | chr7_1:41308785-41308804 | Msa1019550:intron | 30.0% |
| TAATTAACAGAATGTTGGGA+TGG | - | chr7_1:41308959-41308978 | Msa1019550:intron | 30.0% | |
| AATTAACAGAATGTTGGGAT+GGG | - | chr7_1:41308960-41308979 | Msa1019550:intron | 30.0% | |
| ! | TAGAAATACAGGGTTTTCAA+GGG | + | chr7_1:41308995-41309014 | None:intergenic | 30.0% |
| ! | ATAGAAATACAGGGTTTTCA+AGG | + | chr7_1:41308996-41309015 | None:intergenic | 30.0% |
| ! | ACCGATAATAGAGTGAATTT+TGG | - | chr7_1:41309086-41309105 | Msa1019550:intron | 30.0% |
| ! | ATGTCAAAAATTTGCTCTGT+CGG | + | chr7_1:41309577-41309596 | None:intergenic | 30.0% |
| !! | TTCATAACATTGCTTTTCTG+AGG | + | chr7_1:41309777-41309796 | None:intergenic | 30.0% |
| TTGATATAACTGAGTGCAAT+GGG | - | chr7_1:41309858-41309877 | Msa1019550:intron | 30.0% | |
| ATTTCTCAAACAGTGACTAA+AGG | - | chr7_1:41310009-41310028 | Msa1019550:intron | 30.0% | |
| !! | TTTTAATTGTTCATGCTTGC+AGG | - | chr7_1:41310059-41310078 | Msa1019550:intron | 30.0% |
| GTATCAGCAAAATCATGAAT+AGG | + | chr7_1:41310104-41310123 | None:intergenic | 30.0% | |
| ! | ATTTTGCTGATACTAGCAAT+AGG | - | chr7_1:41310111-41310130 | Msa1019550:intron | 30.0% |
| TCTATCTTGGGTTCATTTAT+AGG | + | chr7_1:41310252-41310271 | None:intergenic | 30.0% | |
| ! | AATTTTATGCCACTCTATCT+TGG | + | chr7_1:41310349-41310368 | None:intergenic | 30.0% |
| AGATAGAGTGGCATAAAATT+CGG | - | chr7_1:41310349-41310368 | Msa1019550:intron | 30.0% | |
| CTAGTATATGATCTCTGTTA+TGG | - | chr7_1:41310405-41310424 | Msa1019550:intron | 30.0% | |
| AGGTGAAAAGAGTTGTAATT+AGG | - | chr7_1:41310432-41310451 | Msa1019550:intron | 30.0% | |
| ATGTAACCCAGTTCTTTAAA+AGG | + | chr7_1:41310652-41310671 | None:intergenic | 30.0% | |
| AGCAGTGATGATATATACCT+GGG | + | chr7_1:41305535-41305554 | None:intergenic | 35.0% | |
| AAGCAGTGATGATATATACC+TGG | + | chr7_1:41305536-41305555 | None:intergenic | 35.0% | |
| ! | GTCTAGTTTCTGTACTTGAT+AGG | + | chr7_1:41305611-41305630 | None:intergenic | 35.0% |
| !!! | TAAGATTTTTTGCTACTGGC+TGG | - | chr7_1:41305874-41305893 | Msa1019550:CDS | 35.0% |
| ! | GGTTTAGGGTTATTAAGTTG+AGG | + | chr7_1:41306076-41306095 | None:intergenic | 35.0% |
| GGGAGGTTTGCAATAAAAAT+AGG | + | chr7_1:41306097-41306116 | None:intergenic | 35.0% | |
| !! | TAGACTAGCTTCTTGCTTAA+GGG | + | chr7_1:41306117-41306136 | None:intergenic | 35.0% |
| !! | TTAGACTAGCTTCTTGCTTA+AGG | + | chr7_1:41306118-41306137 | None:intergenic | 35.0% |
| ! | TTGTAGGATCAGTGCTTTTA+AGG | - | chr7_1:41306348-41306367 | Msa1019550:CDS | 35.0% |
| CGAATGCTAATGTCAACTAT+AGG | + | chr7_1:41306409-41306428 | None:intergenic | 35.0% | |
| CATAACTTTGCAGGATTTCT+TGG | + | chr7_1:41306607-41306626 | None:intergenic | 35.0% | |
| TCATCCAATGAAGCATGTAA+GGG | + | chr7_1:41307207-41307226 | None:intergenic | 35.0% | |
| TTCATCCAATGAAGCATGTA+AGG | + | chr7_1:41307208-41307227 | None:intergenic | 35.0% | |
| ! | AAGAGCACAAGTATCATGTA+CGG | - | chr7_1:41307534-41307553 | Msa1019550:intron | 35.0% |
| ! | TTGATGGCAGATAATTCACT+TGG | - | chr7_1:41307664-41307683 | Msa1019550:intron | 35.0% |
| TTGGAATCATATACTCACGA+AGG | + | chr7_1:41307708-41307727 | None:intergenic | 35.0% | |
| CAGATAGAATTTGAGTCTCT+TGG | + | chr7_1:41307727-41307746 | None:intergenic | 35.0% | |
| ! | GTATGATACACGTAGTTTGT+CGG | - | chr7_1:41307750-41307769 | Msa1019550:intron | 35.0% |
| CTCAAGAATTGGATGACAAA+AGG | - | chr7_1:41307799-41307818 | Msa1019550:intron | 35.0% | |
| AAGCTTAAAGGTGACAAGAA+AGG | - | chr7_1:41307963-41307982 | Msa1019550:CDS | 35.0% | |
| ATGTGTCCTTAATGGTGTTT+CGG | - | chr7_1:41308025-41308044 | Msa1019550:CDS | 35.0% | |
| TATTTAGCCTCAACTATTGG+TGG | + | chr7_1:41308449-41308468 | None:intergenic | 35.0% | |
| CAGTATTTAGCCTCAACTAT+TGG | + | chr7_1:41308452-41308471 | None:intergenic | 35.0% | |
| GGCTAAATACTGTGATGATA+CGG | - | chr7_1:41308460-41308479 | Msa1019550:intron | 35.0% | |
| TAGTTTGGATGCTACGTAAT+TGG | - | chr7_1:41308506-41308525 | Msa1019550:intron | 35.0% | |
| TAACACTAAGATCCAAGCAT+AGG | + | chr7_1:41308572-41308591 | None:intergenic | 35.0% | |
| ACGTTGAACGGTGATTTATA+AGG | - | chr7_1:41308592-41308611 | Msa1019550:CDS | 35.0% | |
| ! | TATAAGGCCTTTTGATATGC+TGG | - | chr7_1:41308608-41308627 | Msa1019550:CDS | 35.0% |
| GTAATCACCAGCATATCAAA+AGG | + | chr7_1:41308618-41308637 | None:intergenic | 35.0% | |
| TTCCAATCATTAAATGCTGC+AGG | - | chr7_1:41308639-41308658 | Msa1019550:intron | 35.0% | |
| AACCTGCAGCATTTAATGAT+TGG | + | chr7_1:41308644-41308663 | None:intergenic | 35.0% | |
| TCATTAAATGCTGCAGGTTT+AGG | - | chr7_1:41308645-41308664 | Msa1019550:intron | 35.0% | |
| TAACAGTCATTGTGACAATG+TGG | - | chr7_1:41308747-41308766 | Msa1019550:intron | 35.0% | |
| AACAGTCATTGTGACAATGT+GGG | - | chr7_1:41308748-41308767 | Msa1019550:intron | 35.0% | |
| CTCAAATAGTAGCACCTAAA+AGG | + | chr7_1:41308802-41308821 | None:intergenic | 35.0% | |
| ! | ATGCATGTTGAAAGTGTATC+AGG | - | chr7_1:41308834-41308853 | Msa1019550:intron | 35.0% |
| !!! | TCTTTCACATTTTTCAGGCA+TGG | + | chr7_1:41308919-41308938 | None:intergenic | 35.0% |
| AAATGTAAACAATTCCGGTG+TGG | - | chr7_1:41309152-41309171 | Msa1019550:intron | 35.0% | |
| TATGCCGCAAAAATAGTTTC+TGG | - | chr7_1:41309219-41309238 | Msa1019550:intron | 35.0% | |
| ATGCCGCAAAAATAGTTTCT+GGG | - | chr7_1:41309220-41309239 | Msa1019550:intron | 35.0% | |
| !!! | AGTCCCAGAAACTATTTTTG+CGG | + | chr7_1:41309226-41309245 | None:intergenic | 35.0% |
| !! | CAAAAATAGTTTCTGGGACT+TGG | - | chr7_1:41309226-41309245 | Msa1019550:intron | 35.0% |
| GTTTCTGTTCCTTTCATCAA+CGG | - | chr7_1:41309260-41309279 | Msa1019550:intron | 35.0% | |
| ! | AACTAAACACCGTTGATGAA+AGG | + | chr7_1:41309272-41309291 | None:intergenic | 35.0% |
| CTATTATGAACACATGCAAG+AGG | + | chr7_1:41309421-41309440 | None:intergenic | 35.0% | |
| CCATGAGTTAAAACAAGTAC+AGG | + | chr7_1:41309487-41309506 | None:intergenic | 35.0% | |
| !!! | CCTGTACTTGTTTTAACTCA+TGG | - | chr7_1:41309484-41309503 | Msa1019550:CDS | 35.0% |
| ATAACTCCCCCAAATATACA+CGG | + | chr7_1:41309543-41309562 | None:intergenic | 35.0% | |
| TGTATATTTGGGGGAGTTAT+TGG | - | chr7_1:41309543-41309562 | Msa1019550:CDS | 35.0% | |
| GTATATTTGGGGGAGTTATT+GGG | - | chr7_1:41309544-41309563 | Msa1019550:CDS | 35.0% | |
| AGAATGTTCAATGAAAGGGA+TGG | + | chr7_1:41309626-41309645 | None:intergenic | 35.0% | |
| GTTGATATAACTGAGTGCAA+TGG | - | chr7_1:41309857-41309876 | Msa1019550:intron | 35.0% | |
| ! | TCGAGATAGAGTGTTTGATT+TGG | + | chr7_1:41309983-41310002 | None:intergenic | 35.0% |
| CTAGCAATAGGATTTGTCAT+TGG | - | chr7_1:41310123-41310142 | Msa1019550:intron | 35.0% | |
| TTTATAGGACCTTCCACATT+TGG | + | chr7_1:41310237-41310256 | None:intergenic | 35.0% | |
| AGATTTGGACACTCTATCTT+GGG | + | chr7_1:41310264-41310283 | None:intergenic | 35.0% | |
| AAATCTGGAAGTTCCCAAAA+GGG | - | chr7_1:41310278-41310297 | Msa1019550:intron | 35.0% | |
| ! | TTTATCTTGGGTTCCCTTTT+GGG | + | chr7_1:41310294-41310313 | None:intergenic | 35.0% |
| !!! | AGTTTTGGACGCTTTATCTT+GGG | + | chr7_1:41310306-41310325 | None:intergenic | 35.0% |
| ! | TCTATCTTGGCTTCCTTTTT+AGG | + | chr7_1:41310336-41310355 | None:intergenic | 35.0% |
| !! | GAGTTGTAATTAGGAGTACT+TGG | - | chr7_1:41310441-41310460 | Msa1019550:intron | 35.0% |
| !! | ATCACTTTTGTTCCTTGCTT+TGG | - | chr7_1:41310502-41310521 | Msa1019550:intron | 35.0% |
| AACTGAGTATATGAGAGTGA+TGG | - | chr7_1:41310676-41310695 | Msa1019550:exon | 35.0% | |
| TTGGTTACCAGTACTTACTA+GGG | - | chr7_1:41310715-41310734 | Msa1019550:five_prime_UTR | 35.0% | |
| TCATCATCATTCATCATGGG+CGG | - | chr7_1:41305357-41305376 | Msa1019550:three_prime_UTR | 40.0% | |
| !! | TCCACTGATTCTAACCATAC+TGG | - | chr7_1:41305384-41305403 | Msa1019550:three_prime_UTR | 40.0% |
| ACCAGTATGGTTAGAATCAG+TGG | + | chr7_1:41305388-41305407 | None:intergenic | 40.0% | |
| GATGATATATACCTGGGAGT+GGG | + | chr7_1:41305529-41305548 | None:intergenic | 40.0% | |
| TGATGATATATACCTGGGAG+TGG | + | chr7_1:41305530-41305549 | None:intergenic | 40.0% | |
| ATAATTATGGGTGTCCGTGT+CGG | - | chr7_1:41305717-41305736 | Msa1019550:CDS | 40.0% | |
| TGCTTCTGAACAAGCACTTA+TGG | - | chr7_1:41306044-41306063 | Msa1019550:intron | 40.0% | |
| ! | GTTTGGAACCATGTTGATGT+TGG | - | chr7_1:41306150-41306169 | Msa1019550:intron | 40.0% |
| TGGGAAAACCAACATCAACA+TGG | + | chr7_1:41306161-41306180 | None:intergenic | 40.0% | |
| ! | CTGATTTTCGTGCATTCGAT+GGG | + | chr7_1:41306180-41306199 | None:intergenic | 40.0% |
| ! | TCTGATTTTCGTGCATTCGA+TGG | + | chr7_1:41306181-41306200 | None:intergenic | 40.0% |
| ACGCTTCAATTTGTAGCTTC+AGG | - | chr7_1:41306200-41306219 | Msa1019550:intron | 40.0% | |
| !! | ATTTTGCTGTGGAAACGCAT+CGG | - | chr7_1:41306223-41306242 | Msa1019550:intron | 40.0% |
| TAATGTTTCAGGGATAGTCG+AGG | - | chr7_1:41306452-41306471 | Msa1019550:intron | 40.0% | |
| AGACGTTAGTGAAGAAAGTG+TGG | - | chr7_1:41306526-41306545 | Msa1019550:CDS | 40.0% | |
| !! | TCTGCTACTGATTCTGTTGT+TGG | - | chr7_1:41306557-41306576 | Msa1019550:CDS | 40.0% |
| ! | CTGATTCTGTTGTTGGTGAA+AGG | - | chr7_1:41306564-41306583 | Msa1019550:CDS | 40.0% |
| AAACGGTCTAGTCAAAGTGA+AGG | - | chr7_1:41306871-41306890 | Msa1019550:intron | 40.0% | |
| CATTCACTATGGAACAGAGT+CGG | + | chr7_1:41307152-41307171 | None:intergenic | 40.0% | |
| TGTGGCAGTAACATTCACTA+TGG | + | chr7_1:41307163-41307182 | None:intergenic | 40.0% | |
| AGTGAATGTTACTGCCACAT+TGG | - | chr7_1:41307164-41307183 | Msa1019550:intron | 40.0% | |
| GAAAGAAGAATGTGCCAATG+TGG | + | chr7_1:41307181-41307200 | None:intergenic | 40.0% | |
| GGTTTGATTGTCACAGCTAT+AGG | - | chr7_1:41307353-41307372 | Msa1019550:intron | 40.0% | |
| ! | ACATGGACTGAAAAGGCTAA+AGG | - | chr7_1:41307382-41307401 | Msa1019550:intron | 40.0% |
| ATGGCAGATAATTCACTTGG+AGG | - | chr7_1:41307667-41307686 | Msa1019550:intron | 40.0% | |
| TGGCAGATAATTCACTTGGA+GGG | - | chr7_1:41307668-41307687 | Msa1019550:intron | 40.0% | |
| !! | ATGACAAAAGGTGTTCGTCA+TGG | - | chr7_1:41307811-41307830 | Msa1019550:intron | 40.0% |
| CAAATTCTCTATCAGGGGTA+TGG | - | chr7_1:41307914-41307933 | Msa1019550:intron | 40.0% | |
| TCAGAACCGAAACACCATTA+AGG | + | chr7_1:41308034-41308053 | None:intergenic | 40.0% | |
| ! | TGAAAATTCTGGTGGTGCTT+TGG | - | chr7_1:41308061-41308080 | Msa1019550:CDS | 40.0% |
| ! | TGCCCATTCCTGTCTTTTAA+AGG | - | chr7_1:41308122-41308141 | Msa1019550:intron | 40.0% |
| TGTCATTCCACCAATAGTTG+AGG | - | chr7_1:41308439-41308458 | Msa1019550:intron | 40.0% | |
| ! | TATCAGAGTGTCCGAATACA+AGG | + | chr7_1:41308688-41308707 | None:intergenic | 40.0% |
| AAACTAAAAAGCAGCCACAC+CGG | + | chr7_1:41309169-41309188 | None:intergenic | 40.0% | |
| !! | AATAGTTTCTGGGACTTGGA+AGG | - | chr7_1:41309230-41309249 | Msa1019550:intron | 40.0% |
| ! | TCAAAAATTTGCTCTGTCGG+TGG | + | chr7_1:41309574-41309593 | None:intergenic | 40.0% |
| ! | GAGCAAATTTTTGACATCCC+AGG | - | chr7_1:41309580-41309599 | Msa1019550:CDS | 40.0% |
| ! | CATAAGTTGAAAGGCTACCT+GGG | + | chr7_1:41309600-41309619 | None:intergenic | 40.0% |
| ! | ACATAAGTTGAAAGGCTACC+TGG | + | chr7_1:41309601-41309620 | None:intergenic | 40.0% |
| ! | GGATGGTGACATAAGTTGAA+AGG | + | chr7_1:41309609-41309628 | None:intergenic | 40.0% |
| CAGATTTGGACACTCTATCT+TGG | + | chr7_1:41310265-41310284 | None:intergenic | 40.0% | |
| ! | CAAGATAGAGTGTCCAAATC+TGG | - | chr7_1:41310263-41310282 | Msa1019550:intron | 40.0% |
| !! | CTTTTGGGAACTTCCAGATT+TGG | + | chr7_1:41310279-41310298 | None:intergenic | 40.0% |
| CAAATCTGGAAGTTCCCAAA+AGG | - | chr7_1:41310277-41310296 | Msa1019550:intron | 40.0% | |
| ! | CTTTATCTTGGGTTCCCTTT+TGG | + | chr7_1:41310295-41310314 | None:intergenic | 40.0% |
| !!! | CAGTTTTGGACGCTTTATCT+TGG | + | chr7_1:41310307-41310326 | None:intergenic | 40.0% |
| AAAAGGAAGCCAAGATAGAG+TGG | - | chr7_1:41310337-41310356 | Msa1019550:intron | 40.0% | |
| GGCATAAAATTCGGCACATA+TGG | - | chr7_1:41310358-41310377 | Msa1019550:intron | 40.0% | |
| ATGATCTCTGTTATGGAGCT+AGG | - | chr7_1:41310412-41310431 | Msa1019550:intron | 40.0% | |
| CTGCAGTGTTGTCAATTCAA+TGG | + | chr7_1:41310470-41310489 | None:intergenic | 40.0% | |
| TGTACAGAACTACCAAAGCA+AGG | + | chr7_1:41310517-41310536 | None:intergenic | 40.0% | |
| ! | TGCTTTGGTAGTTCTGTACA+CGG | - | chr7_1:41310517-41310536 | Msa1019550:intron | 40.0% |
| !! | TGACACGCCTTTTAAAGAAC+TGG | - | chr7_1:41310642-41310661 | Msa1019550:intron | 40.0% |
| !! | GACACGCCTTTTAAAGAACT+GGG | - | chr7_1:41310643-41310662 | Msa1019550:intron | 40.0% |
| TGAGTATATGAGAGTGATGG+TGG | - | chr7_1:41310679-41310698 | Msa1019550:exon | 40.0% | |
| !! | CTAGTAAGTACTGGTAACCA+AGG | + | chr7_1:41310716-41310735 | None:intergenic | 40.0% |
| CTTGGTTACCAGTACTTACT+AGG | - | chr7_1:41310714-41310733 | Msa1019550:five_prime_UTR | 40.0% | |
| GAGGATTCTGTTTGTGATCG+TGG | + | chr7_1:41305241-41305260 | None:intergenic | 45.0% | |
| GTCAGTGTCCGTGTCATATT+CGG | + | chr7_1:41305641-41305660 | None:intergenic | 45.0% | |
| ! | ACTAGCTTCTTGCTTAAGGG+AGG | + | chr7_1:41306114-41306133 | None:intergenic | 45.0% |
| ! | GTAGCTTCAGGATTTTGCTG+TGG | - | chr7_1:41306212-41306231 | Msa1019550:intron | 45.0% |
| TGAGTCTGTGGGTAGCAATT+GGG | - | chr7_1:41306251-41306270 | Msa1019550:intron | 45.0% | |
| ! | GTTGGTGAAAGGAAGAGACT+TGG | - | chr7_1:41306575-41306594 | Msa1019550:intron | 45.0% |
| CGTACCCTTACATGCTTCAT+TGG | - | chr7_1:41307200-41307219 | Msa1019550:intron | 45.0% | |
| AGTATGAGGCATGTTGTCTC+TGG | + | chr7_1:41307433-41307452 | None:intergenic | 45.0% | |
| AGAGACAACATGCCTCATAC+TGG | - | chr7_1:41307432-41307451 | Msa1019550:intron | 45.0% | |
| ACAACATGCCTCATACTGGT+TGG | - | chr7_1:41307436-41307455 | Msa1019550:intron | 45.0% | |
| CATGATACTTGTGCTCTTGC+AGG | + | chr7_1:41307532-41307551 | None:intergenic | 45.0% | |
| GATAATTCACTTGGAGGGAG+TGG | - | chr7_1:41307673-41307692 | Msa1019550:intron | 45.0% | |
| ! | AAATTCTGGTGGTGCTTTGG+AGG | - | chr7_1:41308064-41308083 | Msa1019550:CDS | 45.0% |
| ! | AGAGTGTCCGAATACAAGGT+AGG | + | chr7_1:41308684-41308703 | None:intergenic | 45.0% |
| AATGTTGGGATGGGATAGCA+GGG | - | chr7_1:41308969-41308988 | Msa1019550:intron | 45.0% | |
| AATATACACGGACACGAGCT+CGG | + | chr7_1:41309531-41309550 | None:intergenic | 45.0% | |
| AGCTCGTGTCCGTGTATATT+TGG | - | chr7_1:41309531-41309550 | Msa1019550:CDS | 45.0% | |
| GCTCGTGTCCGTGTATATTT+GGG | - | chr7_1:41309532-41309551 | Msa1019550:CDS | 45.0% | |
| CTCGTGTCCGTGTATATTTG+GGG | - | chr7_1:41309533-41309552 | Msa1019550:CDS | 45.0% | |
| TCGTGTCCGTGTATATTTGG+GGG | - | chr7_1:41309534-41309553 | Msa1019550:CDS | 45.0% | |
| ACTAGGTCATCACAGTCTGA+AGG | + | chr7_1:41309693-41309712 | None:intergenic | 45.0% | |
| ACTTCTCTACTGCAAGTGTG+CGG | + | chr7_1:41310201-41310220 | None:intergenic | 45.0% | |
| !! | TGAGAGTGATGGTGGATTGT+AGG | - | chr7_1:41310687-41310706 | Msa1019550:exon | 45.0% |
| AAGTTGGCCCTAGTAAGTAC+TGG | + | chr7_1:41310725-41310744 | None:intergenic | 45.0% | |
| !! | ATAGAAAAATAAAATAAAAA+CGG | - | chr7_1:41306854-41306873 | Msa1019550:intron | 5.0% |
| TCATCATTCATCATGGGCGG+TGG | - | chr7_1:41305360-41305379 | Msa1019550:three_prime_UTR | 50.0% | |
| GATATATACCTGGGAGTGGG+TGG | + | chr7_1:41305526-41305545 | None:intergenic | 50.0% | |
| CACCGACACCGAATATGACA+CGG | - | chr7_1:41305630-41305649 | Msa1019550:three_prime_UTR | 50.0% | |
| !! | GTCCGTGTCATATTCGGTGT+CGG | + | chr7_1:41305635-41305654 | None:intergenic | 50.0% |
| ! | TCCTCAGATTAGCCGTGTCT+CGG | + | chr7_1:41305757-41305776 | None:intergenic | 50.0% |
| GTGAGTCTGTGGGTAGCAAT+TGG | - | chr7_1:41306250-41306269 | Msa1019550:intron | 50.0% | |
| GATTGTCACAGCTATAGGCC+TGG | - | chr7_1:41307358-41307377 | Msa1019550:intron | 50.0% | |
| ACAGCTATAGGCCTGGAACA+TGG | - | chr7_1:41307365-41307384 | Msa1019550:intron | 50.0% | |
| ! | GCCTGGAACATGGACTGAAA+AGG | - | chr7_1:41307375-41307394 | Msa1019550:intron | 50.0% |
| ! | GCCTTTTCAGTCCATGTTCC+AGG | + | chr7_1:41307379-41307398 | None:intergenic | 50.0% |
| CACTTGGACCAACCAGTATG+AGG | + | chr7_1:41307447-41307466 | None:intergenic | 50.0% | |
| ! | CTCATACTGGTTGGTCCAAG+TGG | - | chr7_1:41307445-41307464 | Msa1019550:intron | 50.0% |
| ! | TGGTTGGTCCAAGTGGATCT+GGG | - | chr7_1:41307452-41307471 | Msa1019550:intron | 50.0% |
| ! | GTGCTTTTCCCAGATCCACT+TGG | + | chr7_1:41307463-41307482 | None:intergenic | 50.0% |
| GAATGTTGGGATGGGATAGC+AGG | - | chr7_1:41308968-41308987 | Msa1019550:intron | 50.0% | |
| CTACGGCAGATTCAGTCACT+AGG | + | chr7_1:41309710-41309729 | None:intergenic | 50.0% | |
| GTGACTGAATCTGCCGTAGT+TGG | - | chr7_1:41309711-41309730 | Msa1019550:intron | 50.0% | |
| !! | TGGTGGATTGTAGGACTCCT+TGG | - | chr7_1:41310696-41310715 | Msa1019550:five_prime_UTR | 50.0% |
| TGTCAGACACGACACCGACA+CGG | + | chr7_1:41305734-41305753 | None:intergenic | 55.0% | |
| TCGTGTCTGACACCGAGACA+CGG | - | chr7_1:41305742-41305761 | Msa1019550:CDS | 55.0% | |
| ACCGAGACACGGCTAATCTG+AGG | - | chr7_1:41305753-41305772 | Msa1019550:CDS | 55.0% | |
| ! | CATCGGAAGCGTGAGTCTGT+GGG | - | chr7_1:41306240-41306259 | Msa1019550:intron | 55.0% |
| CAGGGATAGTCGAGGTTTGC+AGG | - | chr7_1:41306460-41306479 | Msa1019550:intron | 55.0% | |
| ! | CTGGTTGGTCCAAGTGGATC+TGG | - | chr7_1:41307451-41307470 | Msa1019550:intron | 55.0% |
| !! | GTCATGGAGAGCTTGTTGCC+AGG | - | chr7_1:41307827-41307846 | Msa1019550:intron | 55.0% |
| GAGCTCGGTCAGAGAGTGAT+AGG | + | chr7_1:41309516-41309535 | None:intergenic | 55.0% | |
| CTACTGCAAGTGTGCGGTTG+AGG | + | chr7_1:41310195-41310214 | None:intergenic | 55.0% | |
| TCACGACACGCGTCCAAATG+TGG | - | chr7_1:41310221-41310240 | Msa1019550:intron | 55.0% | |
| GACACGCGTCCAAATGTGGA+AGG | - | chr7_1:41310225-41310244 | Msa1019550:intron | 55.0% | |
| CTGGGAGTGGGTGGAGAAGA+AGG | + | chr7_1:41305517-41305536 | None:intergenic | 60.0% | |
| CTTCTTCTCCACCCACTCCC+AGG | - | chr7_1:41305515-41305534 | Msa1019550:three_prime_UTR | 60.0% | |
| ! | GCATCGGAAGCGTGAGTCTG+TGG | - | chr7_1:41306239-41306258 | Msa1019550:intron | 60.0% |
| !! | CTGGTGGTGCTTTGGAGGCA+CGG | - | chr7_1:41308069-41308088 | Msa1019550:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 41305176 | 41310890 | 41305176 | ID=Msa1019550;Name=Msa1019550 |
| chr7_1 | mRNA | 41305176 | 41310890 | 41305176 | ID=Msa1019550-mRNA-1;Parent=Msa1019550;Name=Msa1019550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=196|0.88|0.8|1|0.88|0.8|10|473|413 |
| chr7_1 | exon | 41305176 | 41305307 | 41305176 | ID=Msa1019550-mRNA-1:exon:8078;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41305342 | 41305985 | 41305342 | ID=Msa1019550-mRNA-1:exon:8077;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41306266 | 41306369 | 41306266 | ID=Msa1019550-mRNA-1:exon:8076;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41306465 | 41306590 | 41306465 | ID=Msa1019550-mRNA-1:exon:8075;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41307923 | 41308137 | 41307923 | ID=Msa1019550-mRNA-1:exon:8074;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41308218 | 41308392 | 41308218 | ID=Msa1019550-mRNA-1:exon:8073;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41308516 | 41308632 | 41308516 | ID=Msa1019550-mRNA-1:exon:8072;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41309470 | 41309603 | 41309470 | ID=Msa1019550-mRNA-1:exon:8071;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41310530 | 41310563 | 41310530 | ID=Msa1019550-mRNA-1:exon:8070;Parent=Msa1019550-mRNA-1 |
| chr7_1 | exon | 41310661 | 41310890 | 41310661 | ID=Msa1019550-mRNA-1:exon:8069;Parent=Msa1019550-mRNA-1 |
| chr7_1 | five_prime_UTR | 41310695 | 41310890 | 41310695 | ID=Msa1019550-mRNA-1:five_prime_utr;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41310661 | 41310694 | 41310661 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41310530 | 41310563 | 41310530 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41309470 | 41309603 | 41309470 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41308516 | 41308632 | 41308516 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41308218 | 41308392 | 41308218 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41307923 | 41308137 | 41307923 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41306465 | 41306590 | 41306465 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41306266 | 41306369 | 41306266 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | CDS | 41305683 | 41305985 | 41305683 | ID=Msa1019550-mRNA-1:cds;Parent=Msa1019550-mRNA-1 |
| chr7_1 | three_prime_UTR | 41305342 | 41305682 | 41305342 | ID=Msa1019550-mRNA-1:three_prime_utr;Parent=Msa1019550-mRNA-1 |
| chr7_1 | three_prime_UTR | 41305176 | 41305307 | 41305176 | ID=Msa1019550-mRNA-1:three_prime_utr;Parent=Msa1019550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
