Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171210 | XP_039683735.1 | 82.073 | 463 | 33 | 1 | 1 | 413 | 1 | 463 | 0.0 | 771 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0604290 | Msa1171210 | 0.815828 | 7.567214e-52 | -8.615850e-47 |
| Msa0757610 | Msa1171210 | 0.803332 | 3.666809e-49 | -8.615850e-47 |
| Msa0385500 | Msa1171210 | 0.805818 | 1.110829e-49 | -8.615850e-47 |
| Msa1019550 | Msa1171210 | 0.995230 | 3.033177e-214 | -8.615850e-47 |
| Msa1029050 | Msa1171210 | 0.814493 | 1.497816e-51 | -8.615850e-47 |
| Msa1059150 | Msa1171210 | 0.883056 | 6.197304e-71 | -8.615850e-47 |
| Msa0257490 | Msa1171210 | 0.811119 | 8.209562e-51 | -8.615850e-47 |
| Msa0296790 | Msa1171210 | 0.811672 | 6.226817e-51 | -8.615850e-47 |
| Msa1150090 | Msa1171210 | 0.992125 | 1.907574e-191 | -8.615850e-47 |
| Msa0542290 | Msa1171210 | 0.801036 | 1.088030e-48 | -8.615850e-47 |
| Msa0542560 | Msa1171210 | 0.801327 | 9.487997e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171210 | MtrunA17_Chr7g0235041 | 80.169 | 474 | 33 | 2 | 1 | 413 | 1 | 474 | 0.0 | 763 |
| Msa1171210 | MtrunA17_Chr7g0235031 | 64.565 | 460 | 105 | 4 | 1 | 403 | 1 | 459 | 0.0 | 562 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1171210 | AT4G13030.2 | 39.481 | 385 | 183 | 14 | 68 | 413 | 103 | 476 | 7.47e-73 | 236 |
| Msa1171210 | AT4G13030.1 | 39.481 | 385 | 183 | 14 | 68 | 413 | 105 | 478 | 8.92e-73 | 236 |
| Msa1171210 | AT4G13030.3 | 39.481 | 385 | 183 | 14 | 68 | 413 | 106 | 479 | 9.15e-73 | 236 |
Find 96 sgRNAs with CRISPR-Local
Find 327 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTATCTTGGGTTCATTTAT+AGG | 0.161868 | 8_1:+831430 | None:intergenic |
| CTTTATCTTGGGTTCCCTTT+TGG | 0.172518 | 8_1:+831387 | None:intergenic |
| AGCTCGTGTCCGTGTATATT+TGG | 0.194089 | 8_1:-832148 | Msa1171210:CDS |
| TCTTATTAGGTAAGTTCTTT+AGG | 0.238635 | 8_1:-831072 | Msa1171210:three_prime_UTR |
| GAAAAGCAATGTTATGAATA+AGG | 0.244087 | 8_1:-831900 | Msa1171210:intron |
| TCTGCTACTGATTCTGTTGT+TGG | 0.274024 | 8_1:-835122 | Msa1171210:CDS |
| CATCATTGTTATAATGTAAA+TGG | 0.280008 | 8_1:+830864 | None:intergenic |
| ATGTAACCCAGTTCTTTAAA+AGG | 0.290049 | 8_1:+831030 | None:intergenic |
| GAGAAGAATGAATTAGATTT+CGG | 0.306369 | 8_1:-835176 | Msa1171210:CDS |
| GCTCGTGTCCGTGTATATTT+GGG | 0.308632 | 8_1:-832147 | Msa1171210:CDS |
| ATTTAATATAATACACATAA+TGG | 0.316117 | 8_1:+830827 | None:intergenic |
| CTGGTTGGTCCAAGTGGATC+TGG | 0.322073 | 8_1:-834228 | Msa1171210:CDS |
| CTGAATGTGATTGAAAATTC+TGG | 0.329930 | 8_1:-833629 | Msa1171210:CDS |
| AAAACTGAAAGTTCCTAAAA+AGG | 0.336316 | 8_1:-831359 | Msa1171210:CDS |
| TATGTTATATGTGTCCTTAA+TGG | 0.342707 | 8_1:-833662 | Msa1171210:CDS |
| TTTATAGGACCTTCCACATT+TGG | 0.344558 | 8_1:+831445 | None:intergenic |
| CAGATTTGGACACTCTATCT+TGG | 0.345258 | 8_1:+831417 | None:intergenic |
| AGGTGAAAAGAGTTGTAATT+AGG | 0.349852 | 8_1:-831247 | Msa1171210:three_prime_UTR |
| ATAATAAAATGCTCAAGAAT+TGG | 0.359391 | 8_1:-833891 | Msa1171210:CDS |
| TGAAAATTCTGGTGGTGCTT+TGG | 0.359422 | 8_1:-833618 | Msa1171210:CDS |
| CAAGATAGAGTGTCCAAATC+TGG | 0.362124 | 8_1:-831416 | Msa1171210:CDS |
| CAGATAGAATTTGAGTCTCT+TGG | 0.362225 | 8_1:+833955 | None:intergenic |
| CATGATACTTGTGCTCTTGC+AGG | 0.364244 | 8_1:+834150 | None:intergenic |
| CAGGGATAGTCGAGGTTTGC+AGG | 0.366338 | 8_1:-835219 | Msa1171210:CDS |
| ATGTGTCCTTAATGGTGTTT+CGG | 0.368074 | 8_1:-833654 | Msa1171210:CDS |
| TCAGAACCGAAACACCATTA+AGG | 0.375881 | 8_1:+833648 | None:intergenic |
| AGATTTGGACACTCTATCTT+GGG | 0.383689 | 8_1:+831418 | None:intergenic |
| CTAGTATATGATCTCTGTTA+TGG | 0.413746 | 8_1:-831274 | Msa1171210:three_prime_UTR |
| GAGCTCGGTCAGAGAGTGAT+AGG | 0.419869 | 8_1:+832166 | None:intergenic |
| TACCTTTAAAAGACAGGAAT+GGG | 0.433374 | 8_1:+833555 | None:intergenic |
| CAAATTCTCTATCAGGGGTA+TGG | 0.434045 | 8_1:-833765 | Msa1171210:intron |
| CTAGCAATAGGATTTGTCAT+TGG | 0.434697 | 8_1:-831556 | Msa1171210:CDS |
| AGATAGAGTGGCATAAAATT+CGG | 0.438343 | 8_1:-831330 | Msa1171210:CDS |
| GTATCAGCAAAATCATGAAT+AGG | 0.443249 | 8_1:+831578 | None:intergenic |
| CTACTGCAAGTGTGCGGTTG+AGG | 0.446262 | 8_1:+831487 | None:intergenic |
| GGCATAAAATTCGGCACATA+TGG | 0.446865 | 8_1:-831321 | Msa1171210:CDS |
| TCCACTGATTCTAACCATAC+TGG | 0.457218 | 8_1:-836295 | Msa1171210:intron |
| CTCAAGAATTGGATGACAAA+AGG | 0.457854 | 8_1:-833880 | Msa1171210:CDS |
| CTTCTTCTCCACCCACTCCC+AGG | 0.466904 | 8_1:-836164 | Msa1171210:intron |
| TGAGAGTGATGGTGGATTGT+AGG | 0.470316 | 8_1:-830992 | Msa1171210:three_prime_UTR |
| ATCATCATCATCATTCATCA+TGG | 0.473117 | 8_1:-836326 | Msa1171210:exon |
| CTGGGAGTGGGTGGAGAAGA+AGG | 0.473521 | 8_1:+836165 | None:intergenic |
| AGAAAATACCTTTAAAAGAC+AGG | 0.478362 | 8_1:+833549 | None:intergenic |
| GTGACTGAATCTGCCGTAGT+TGG | 0.478664 | 8_1:-831968 | Msa1171210:CDS |
| CAAATCTGGAAGTTCCCAAA+AGG | 0.478710 | 8_1:-831402 | Msa1171210:CDS |
| GAGTTGTAATTAGGAGTACT+TGG | 0.485433 | 8_1:-831238 | Msa1171210:three_prime_UTR |
| AAGCTTAAAGGTGACAAGAA+AGG | 0.490372 | 8_1:-833716 | Msa1171210:CDS |
| AAATTCTGGTGGTGCTTTGG+AGG | 0.492221 | 8_1:-833615 | Msa1171210:CDS |
| AGAGACAACATGCCTCATAC+TGG | 0.492904 | 8_1:-834247 | Msa1171210:CDS |
| CCATGAGTTAAAACAAGTAC+AGG | 0.493295 | 8_1:+832195 | None:intergenic |
| GATAATTCACTTGGAGGGAG+TGG | 0.495377 | 8_1:-834006 | Msa1171210:CDS |
| GTCATGGAGAGCTTGTTGCC+AGG | 0.504453 | 8_1:-833852 | Msa1171210:intron |
| ATGATCTCTGTTATGGAGCT+AGG | 0.505275 | 8_1:-831267 | Msa1171210:three_prime_UTR |
| CTGGTGGTGCTTTGGAGGCA+CGG | 0.508561 | 8_1:-833610 | Msa1171210:CDS |
| ACCAGTATGGTTAGAATCAG+TGG | 0.509955 | 8_1:+836294 | None:intergenic |
| GTATGATACACGTAGTTTGT+CGG | 0.510788 | 8_1:-833929 | Msa1171210:CDS |
| TGGTGGATTGTAGGACTCCT+TGG | 0.519757 | 8_1:-830983 | Msa1171210:three_prime_UTR |
| CTGATTCTGTTGTTGGTGAA+AGG | 0.519978 | 8_1:-835115 | Msa1171210:CDS |
| CACTTGGACCAACCAGTATG+AGG | 0.522542 | 8_1:+834235 | None:intergenic |
| ATGGCAGATAATTCACTTGG+AGG | 0.534040 | 8_1:-834012 | Msa1171210:intron |
| TCACGACACGCGTCCAAATG+TGG | 0.541487 | 8_1:-831458 | Msa1171210:CDS |
| AATATACACGGACACGAGCT+CGG | 0.542671 | 8_1:+832151 | None:intergenic |
| ATACCTTTAAAAGACAGGAA+TGG | 0.550299 | 8_1:+833554 | None:intergenic |
| TTGATGGCAGATAATTCACT+TGG | 0.556082 | 8_1:-834015 | Msa1171210:intron |
| AAATCTGGAAGTTCCCAAAA+GGG | 0.558483 | 8_1:-831401 | Msa1171210:CDS |
| TGCTTTGGTAGTTCTGTACA+CGG | 0.562614 | 8_1:-831162 | Msa1171210:three_prime_UTR |
| TGGTTGGTCCAAGTGGATCT+GGG | 0.569380 | 8_1:-834227 | Msa1171210:CDS |
| CTGCAGTGTTGTCAATTCAA+TGG | 0.574835 | 8_1:+831212 | None:intergenic |
| CTACGGCAGATTCAGTCACT+AGG | 0.577978 | 8_1:+831972 | None:intergenic |
| TGGCAGATAATTCACTTGGA+GGG | 0.579251 | 8_1:-834011 | Msa1171210:intron |
| CTCATACTGGTTGGTCCAAG+TGG | 0.588327 | 8_1:-834234 | Msa1171210:CDS |
| ATGACAAAAGGTGTTCGTCA+TGG | 0.590159 | 8_1:-833868 | Msa1171210:CDS |
| TGAGTATATGAGAGTGATGG+TGG | 0.592459 | 8_1:-831000 | Msa1171210:three_prime_UTR |
| TCATCATCATCATTCATCAT+GGG | 0.597108 | 8_1:-836325 | Msa1171210:exon |
| AAAAGGAAGCCAAGATAGAG+TGG | 0.597198 | 8_1:-831342 | Msa1171210:CDS |
| TGATGATATATACCTGGGAG+TGG | 0.598814 | 8_1:+836152 | None:intergenic |
| TCATCATTCATCATGGGCGG+TGG | 0.599969 | 8_1:-836319 | Msa1171210:exon |
| ATATCTTAACATTCCAACTA+CGG | 0.604056 | 8_1:+831955 | None:intergenic |
| GAGGATTCTGTTTGTGATCG+TGG | 0.609511 | 8_1:+836441 | None:intergenic |
| GATATATACCTGGGAGTGGG+TGG | 0.609726 | 8_1:+836156 | None:intergenic |
| CTCGTGTCCGTGTATATTTG+GGG | 0.610233 | 8_1:-832146 | Msa1171210:CDS |
| CTGTTGAGCGACATAAGTGA+TGG | 0.622726 | 8_1:+831516 | None:intergenic |
| ACAACATGCCTCATACTGGT+TGG | 0.629494 | 8_1:-834243 | Msa1171210:CDS |
| TAATGTTTCAGGGATAGTCG+AGG | 0.642098 | 8_1:-835227 | Msa1171210:intron |
| AGACGTTAGTGAAGAAAGTG+TGG | 0.650856 | 8_1:-835153 | Msa1171210:CDS |
| CTAGTAAGTACTGGTAACCA+AGG | 0.651341 | 8_1:+830966 | None:intergenic |
| GACACGCGTCCAAATGTGGA+AGG | 0.661616 | 8_1:-831454 | Msa1171210:CDS |
| TCATCATCATTCATCATGGG+CGG | 0.664119 | 8_1:-836322 | Msa1171210:exon |
| TGTACAGAACTACCAAAGCA+AGG | 0.665366 | 8_1:+831165 | None:intergenic |
| GTTGGTGAAAGGAAGAGACT+TGG | 0.667250 | 8_1:-835104 | Msa1171210:intron |
| TCGTGTCCGTGTATATTTGG+GGG | 0.675383 | 8_1:-832145 | Msa1171210:CDS |
| AACTGAGTATATGAGAGTGA+TGG | 0.683513 | 8_1:-831003 | Msa1171210:three_prime_UTR |
| ACTTCTCTACTGCAAGTGTG+CGG | 0.699580 | 8_1:+831481 | None:intergenic |
| TTGGAATCATATACTCACGA+AGG | 0.702077 | 8_1:+833974 | None:intergenic |
| AATGTGATTGAAAATTCTGG+TGG | 0.703440 | 8_1:-833626 | Msa1171210:CDS |
| GATGATATATACCTGGGAGT+GGG | 0.703785 | 8_1:+836153 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAAAAAAGAGTTAT+CGG | - | chr8_1:830822-830841 | Msa1171210:three_prime_UTR | 10.0% |
| !! | ATAAGATTCAATATAATTAT+GGG | - | chr8_1:831340-831359 | Msa1171210:CDS | 10.0% |
| !! | TTAATTGAAAAAATGAATTT+AGG | - | chr8_1:832562-832581 | Msa1171210:intron | 10.0% |
| !!! | AACTTTTAAATTAAAGTTAT+AGG | - | chr8_1:833974-833993 | Msa1171210:CDS | 10.0% |
| !! | ATTTAATATAATACACATAA+TGG | + | chr8_1:836490-836509 | None:intergenic | 10.0% |
| !!! | GATAACTCTTTTTTATTTTT+TGG | + | chr8_1:830823-830842 | None:intergenic | 15.0% |
| !!! | AAATATTTTTGGAAAAAGAA+AGG | + | chr8_1:831219-831238 | None:intergenic | 15.0% |
| !!! | TGATTTTTTCAAATTATAAG+CGG | + | chr8_1:831300-831319 | None:intergenic | 15.0% |
| !! | CATAAGATTCAATATAATTA+TGG | - | chr8_1:831339-831358 | Msa1171210:CDS | 15.0% |
| !!! | TATTTTTGCACAAATTTATT+TGG | + | chr8_1:831431-831450 | None:intergenic | 15.0% |
| !! | ATACATTAAAAAACAGAAAT+AGG | + | chr8_1:831475-831494 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTTTATTGTCA+TGG | - | chr8_1:832677-832696 | Msa1171210:intron | 15.0% |
| !!! | TGATATTAACTTGAATAATT+AGG | - | chr8_1:833210-833229 | Msa1171210:intron | 15.0% |
| !! | ACTAGTTATCATAAAATAAA+CGG | + | chr8_1:833893-833912 | None:intergenic | 15.0% |
| !! | TTAAATTAAAGTTATAGGAA+TGG | - | chr8_1:833979-833998 | Msa1171210:CDS | 15.0% |
| !!! | TATATTAAACGTTGTATTTT+AGG | + | chr8_1:834009-834028 | None:intergenic | 15.0% |
| !!! | AATCTAAAATCTTATTAGTT+TGG | - | chr8_1:834126-834145 | Msa1171210:intron | 15.0% |
| !! | TTAATGTATATGTATGTATT+AGG | - | chr8_1:834526-834545 | Msa1171210:intron | 15.0% |
| !! | TATATAAATGTAAACAATTC+CGG | - | chr8_1:834782-834801 | Msa1171210:intron | 15.0% |
| !!! | AGTAAAATTTGCTTATATTT+TGG | - | chr8_1:835555-835574 | Msa1171210:intron | 15.0% |
| !! | AACAATTAAAAAAATCAATG+AGG | + | chr8_1:835685-835704 | None:intergenic | 15.0% |
| !!! | TCAATTAACTTTTTCTTATT+AGG | - | chr8_1:836229-836248 | Msa1171210:intron | 15.0% |
| !! | TCTTTCAAAAAAAAAAAAGT+TGG | + | chr8_1:836376-836395 | None:intergenic | 15.0% |
| !!! | TATTTTGAACTGAATTCAAT+GGG | + | chr8_1:830953-830972 | None:intergenic | 20.0% |
| !! | AGAGTATATGATTAATCATT+AGG | + | chr8_1:831110-831129 | None:intergenic | 20.0% |
| !!! | TGATAGGTTGAAAATATTTT+TGG | + | chr8_1:831230-831249 | None:intergenic | 20.0% |
| !! | AAAAATAGATTGTATTTGGA+GGG | - | chr8_1:831444-831463 | Msa1171210:CDS | 20.0% |
| !!! | TTTTTAAGATTTTTTGCTAC+TGG | - | chr8_1:831505-831524 | Msa1171210:CDS | 20.0% |
| !! | TTGCAATAAAAATAGGTTTA+GGG | + | chr8_1:831725-831744 | None:intergenic | 20.0% |
| !! | TTTGCAATAAAAATAGGTTT+AGG | + | chr8_1:831726-831745 | None:intergenic | 20.0% |
| !! | ATGATGATTTATAATGTTTC+AGG | - | chr8_1:832076-832095 | Msa1171210:intron | 20.0% |
| !! | TGATGATTTATAATGTTTCA+GGG | - | chr8_1:832077-832096 | Msa1171210:intron | 20.0% |
| !! | GCTTAATATTAAGACATATA+TGG | + | chr8_1:832363-832382 | None:intergenic | 20.0% |
| !! | AATGAACAAAGATATATAGA+TGG | + | chr8_1:833249-833268 | None:intergenic | 20.0% |
| !! | ATAATAAAATGCTCAAGAAT+TGG | - | chr8_1:833423-833442 | Msa1171210:intron | 20.0% |
| !! | AGTACTTAAATATATAAACC+TGG | + | chr8_1:833483-833502 | None:intergenic | 20.0% |
| !!! | ATTTTACAAATTCTCTATCA+GGG | - | chr8_1:833543-833562 | Msa1171210:intron | 20.0% |
| !!! | AGTAAAAATTTGAAGCTTAA+AGG | - | chr8_1:833586-833605 | Msa1171210:CDS | 20.0% |
| !! | TTAAAAACTTTCATGAAGAA+TGG | + | chr8_1:834365-834384 | None:intergenic | 20.0% |
| !! | GGAATTGTTTACATTTATAT+AGG | + | chr8_1:834783-834802 | None:intergenic | 20.0% |
| !! | CATTGAAATAATTGAAAGAA+GGG | + | chr8_1:834832-834851 | None:intergenic | 20.0% |
| !! | ACATTGAAATAATTGAAAGA+AGG | + | chr8_1:834833-834852 | None:intergenic | 20.0% |
| !! | TAAAAGAATGTTCAATGAAA+GGG | + | chr8_1:835265-835284 | None:intergenic | 20.0% |
| !! | ATAAAAGAATGTTCAATGAA+AGG | + | chr8_1:835266-835285 | None:intergenic | 20.0% |
| !! | AGCTTGTAACTATAAATTTA+AGG | + | chr8_1:835452-835471 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAGAACTTACT+AGG | - | chr8_1:836383-836402 | Msa1171210:five_prime_UTR | 20.0% |
| !!! | TTTTTTGAAAGAACTTACTA+GGG | - | chr8_1:836384-836403 | Msa1171210:five_prime_UTR | 20.0% |
| !!! | AACAAATAACTACTTTTAGT+TGG | + | chr8_1:836410-836429 | None:intergenic | 20.0% |
| !! | CATCATTGTTATAATGTAAA+TGG | + | chr8_1:836453-836472 | None:intergenic | 20.0% |
| ! | TAAGAACGAACAAAAAAATG+AGG | + | chr8_1:830895-830914 | None:intergenic | 25.0% |
| !!! | CTATTTTGAACTGAATTCAA+TGG | + | chr8_1:830954-830973 | None:intergenic | 25.0% |
| ! | AAGAAAAACAAATACCAGTA+TGG | + | chr8_1:831036-831055 | None:intergenic | 25.0% |
| ! | AATTTATTTGGTTGAAAGCA+CGG | + | chr8_1:831419-831438 | None:intergenic | 25.0% |
| ! | GTGCAAAAATAGATTGTATT+TGG | - | chr8_1:831440-831459 | Msa1171210:CDS | 25.0% |
| ! | CAAAAATAGATTGTATTTGG+AGG | - | chr8_1:831443-831462 | Msa1171210:CDS | 25.0% |
| !! | TGGCTTTTATATTCTTAGTT+TGG | - | chr8_1:831529-831548 | Msa1171210:CDS | 25.0% |
| ! | TCTAAACTTTAGTATACGTT+TGG | - | chr8_1:831768-831787 | Msa1171210:intron | 25.0% |
| !! | TTATGTGAAACATGTTTTGT+AGG | - | chr8_1:831967-831986 | Msa1171210:CDS | 25.0% |
| ! | ACTATAGGATCAAGAAATAA+AGG | + | chr8_1:832029-832048 | None:intergenic | 25.0% |
| ! | GAGAAGAATGAATTAGATTT+CGG | - | chr8_1:832138-832157 | Msa1171210:CDS | 25.0% |
| ! | AAACCAAAGAAAAAATCTTG+AGG | - | chr8_1:832295-832314 | Msa1171210:intron | 25.0% |
| !! | AAAGGGTATATTATTATCTG+AGG | - | chr8_1:832434-832453 | Msa1171210:intron | 25.0% |
| !! | AAAAAATGAATTTAGGACTC+AGG | - | chr8_1:832569-832588 | Msa1171210:intron | 25.0% |
| !!! | GCTTTTTCTTACATAAATCA+AGG | + | chr8_1:832626-832645 | None:intergenic | 25.0% |
| ! | AAGTCATCAAAACTAATCTA+GGG | + | chr8_1:832752-832771 | None:intergenic | 25.0% |
| ! | TAAGTCATCAAAACTAATCT+AGG | + | chr8_1:832753-832772 | None:intergenic | 25.0% |
| ! | TCAGTGTGTAATTGAAATTA+TGG | - | chr8_1:832876-832895 | Msa1171210:intron | 25.0% |
| ! | AACAAAGATATATAGATGGA+AGG | + | chr8_1:833245-833264 | None:intergenic | 25.0% |
| ! | CCATCAAAAGATAAATGTAA+TGG | + | chr8_1:833286-833305 | None:intergenic | 25.0% |
| !! | CCATTACATTTATCTTTTGA+TGG | - | chr8_1:833283-833302 | Msa1171210:intron | 25.0% |
| !! | CATTTTACAAATTCTCTATC+AGG | - | chr8_1:833542-833561 | Msa1171210:intron | 25.0% |
| !! | TTTTACAAATTCTCTATCAG+GGG | - | chr8_1:833544-833563 | Msa1171210:intron | 25.0% |
| !! | ATTAACTTTTCTTCGTTTAC+TGG | + | chr8_1:833632-833651 | None:intergenic | 25.0% |
| ! | TATGTTATATGTGTCCTTAA+TGG | - | chr8_1:833652-833671 | Msa1171210:CDS | 25.0% |
| !! | AGAAAATACCTTTAAAAGAC+AGG | + | chr8_1:833768-833787 | None:intergenic | 25.0% |
| !!! | TGTCTTTTAAAGGTATTTTC+TGG | - | chr8_1:833767-833786 | Msa1171210:intron | 25.0% |
| ! | GCAAATGAAAAAGAAAAAAG+TGG | + | chr8_1:833845-833864 | None:intergenic | 25.0% |
| !! | TTTTCTCTTTCACATTTTTC+AGG | + | chr8_1:834559-834578 | None:intergenic | 25.0% |
| ! | ACGTTTAATTAACAGAATGT+TGG | - | chr8_1:834589-834608 | Msa1171210:intron | 25.0% |
| ! | CGTTTAATTAACAGAATGTT+GGG | - | chr8_1:834590-834609 | Msa1171210:intron | 25.0% |
| ! | ATGAGAAAGATAGAAATACA+GGG | + | chr8_1:834640-834659 | None:intergenic | 25.0% |
| ! | AATGAGAAAGATAGAAATAC+AGG | + | chr8_1:834641-834660 | None:intergenic | 25.0% |
| ! | TTTACAGTATAACTATCGAA+AGG | + | chr8_1:834670-834689 | None:intergenic | 25.0% |
| ! | ACCAAAATTCACTCTATTAT+CGG | + | chr8_1:834725-834744 | None:intergenic | 25.0% |
| ! | AATATTCATGTCAAAGAAAC+TGG | + | chr8_1:834754-834773 | None:intergenic | 25.0% |
| ! | AGAGACTCAATTAGATAAAT+TGG | - | chr8_1:834930-834949 | Msa1171210:intron | 25.0% |
| ! | GAGACTCAATTAGATAAATT+GGG | - | chr8_1:834931-834950 | Msa1171210:intron | 25.0% |
| ! | AATTGGGAGAAATAGTAAAA+AGG | - | chr8_1:834947-834966 | Msa1171210:intron | 25.0% |
| ! | AAATTCAGAAGTTTGTATGA+AGG | - | chr8_1:834981-835000 | Msa1171210:intron | 25.0% |
| ! | AATTCAGAAGTTTGTATGAA+GGG | - | chr8_1:834982-835001 | Msa1171210:intron | 25.0% |
| ! | ATATCTTAACATTCCAACTA+CGG | + | chr8_1:835362-835381 | None:intergenic | 25.0% |
| ! | GAAAAGCAATGTTATGAATA+AGG | - | chr8_1:835414-835433 | Msa1171210:intron | 25.0% |
| ! | AAGCAAAAAATGTAGTTTGA+TGG | + | chr8_1:835582-835601 | None:intergenic | 25.0% |
| !!! | TTTTTAGGAACTTTCAGTTT+TGG | + | chr8_1:835956-835975 | None:intergenic | 25.0% |
| ! | AAAACTGAAAGTTCCTAAAA+AGG | - | chr8_1:835955-835974 | Msa1171210:intron | 25.0% |
| ! | TCTAAAAAGACTTTCTACTT+TGG | + | chr8_1:836185-836204 | None:intergenic | 25.0% |
| ! | TCTTATTAGGTAAGTTCTTT+AGG | - | chr8_1:836242-836261 | Msa1171210:intron | 25.0% |
| ATCATCATCATCATTCATCA+TGG | - | chr8_1:830988-831007 | Msa1171210:three_prime_UTR | 30.0% | |
| TCATCATCATCATTCATCAT+GGG | - | chr8_1:830989-831008 | Msa1171210:three_prime_UTR | 30.0% | |
| AACACAAGAATTCATCAAAG+AGG | + | chr8_1:831084-831103 | None:intergenic | 30.0% | |
| AAGGAAAGTGAAAATCTTCA+TGG | + | chr8_1:831133-831152 | None:intergenic | 30.0% | |
| ATCAACACTAAGTTTCTGTT+AGG | + | chr8_1:831915-831934 | None:intergenic | 30.0% | |
| !! | CTTAGTGTTGATATAATGCA+TGG | - | chr8_1:831923-831942 | Msa1171210:CDS | 30.0% |
| ! | TGATATAATGCATGGCATTT+TGG | - | chr8_1:831931-831950 | Msa1171210:CDS | 30.0% |
| TCAATTCATCATAACTTTGC+AGG | + | chr8_1:832251-832270 | None:intergenic | 30.0% | |
| ! | TGAATTGAAGATTGATAGCA+AGG | - | chr8_1:832263-832282 | Msa1171210:intron | 30.0% |
| !!! | ACACCTCAAGATTTTTTCTT+TGG | + | chr8_1:832301-832320 | None:intergenic | 30.0% |
| ATATTAAGCGAAAGCTTCAA+AGG | - | chr8_1:832374-832393 | Msa1171210:intron | 30.0% | |
| TTCAGCTTTCAAACATTGAA+AGG | - | chr8_1:832416-832435 | Msa1171210:intron | 30.0% | |
| TCAGCTTTCAAACATTGAAA+GGG | - | chr8_1:832417-832436 | Msa1171210:intron | 30.0% | |
| AGGTCAAAAACATGAATTTC+AGG | - | chr8_1:832589-832608 | Msa1171210:intron | 30.0% | |
| TGTCATGGAAATAGTATTAC+AGG | - | chr8_1:832692-832711 | Msa1171210:intron | 30.0% | |
| GTCATGGAAATAGTATTACA+GGG | - | chr8_1:832693-832712 | Msa1171210:intron | 30.0% | |
| TCATGGAAATAGTATTACAG+GGG | - | chr8_1:832694-832713 | Msa1171210:intron | 30.0% | |
| ! | AAATTTTGTATGTGAGCATG+TGG | - | chr8_1:832933-832952 | Msa1171210:intron | 30.0% |
| AGAATATGAAGTTTATCGTG+TGG | - | chr8_1:832967-832986 | Msa1171210:intron | 30.0% | |
| TATCTTTGTTCATTGACCTA+AGG | - | chr8_1:833255-833274 | Msa1171210:intron | 30.0% | |
| !! | AAATGTAATGGATACTCCTT+AGG | + | chr8_1:833274-833293 | None:intergenic | 30.0% |
| CTGAATGTGATTGAAAATTC+TGG | - | chr8_1:833685-833704 | Msa1171210:CDS | 30.0% | |
| AATGTGATTGAAAATTCTGG+TGG | - | chr8_1:833688-833707 | Msa1171210:CDS | 30.0% | |
| ! | TACCTTTAAAAGACAGGAAT+GGG | + | chr8_1:833762-833781 | None:intergenic | 30.0% |
| ! | ATACCTTTAAAAGACAGGAA+TGG | + | chr8_1:833763-833782 | None:intergenic | 30.0% |
| CAGATATAATGTGACACATA+TGG | - | chr8_1:833940-833959 | Msa1171210:CDS | 30.0% | |
| ATATAATGTGACACATATGG+AGG | - | chr8_1:833943-833962 | Msa1171210:CDS | 30.0% | |
| TATAATGTGACACATATGGA+GGG | - | chr8_1:833944-833963 | Msa1171210:CDS | 30.0% | |
| TTGTATAATTGACCTATGCT+TGG | - | chr8_1:834192-834211 | Msa1171210:CDS | 30.0% | |
| ATCTTAGTGTTAACGTTGAA+CGG | - | chr8_1:834215-834234 | Msa1171210:CDS | 30.0% | |
| AAACTATCCTACCTTGTATT+CGG | - | chr8_1:834309-834328 | Msa1171210:intron | 30.0% | |
| AAGGAAATAACACAAGTGTA+TGG | + | chr8_1:834418-834437 | None:intergenic | 30.0% | |
| !!! | CACTTGTGTTATTTCCTTTT+AGG | - | chr8_1:834420-834439 | Msa1171210:intron | 30.0% |
| TAATTAACAGAATGTTGGGA+TGG | - | chr8_1:834594-834613 | Msa1171210:intron | 30.0% | |
| AATTAACAGAATGTTGGGAT+GGG | - | chr8_1:834595-834614 | Msa1171210:intron | 30.0% | |
| ! | TAGAAATACAGGGTTTTCAA+GGG | + | chr8_1:834630-834649 | None:intergenic | 30.0% |
| ! | ATAGAAATACAGGGTTTTCA+AGG | + | chr8_1:834631-834650 | None:intergenic | 30.0% |
| ! | ACCGATAATAGAGTGAATTT+TGG | - | chr8_1:834721-834740 | Msa1171210:intron | 30.0% |
| ! | ATGTCAAAAATTTGCTCTGT+CGG | + | chr8_1:835212-835231 | None:intergenic | 30.0% |
| !! | TTCATAACATTGCTTTTCTG+AGG | + | chr8_1:835412-835431 | None:intergenic | 30.0% |
| TTGATATAACTGAGTGCAAT+GGG | - | chr8_1:835493-835512 | Msa1171210:intron | 30.0% | |
| ATTTCTCAAACAGTGACTAA+AGG | - | chr8_1:835644-835663 | Msa1171210:intron | 30.0% | |
| !! | TTTTAATTGTTCATGCTTGC+AGG | - | chr8_1:835694-835713 | Msa1171210:intron | 30.0% |
| GTATCAGCAAAATCATGAAT+AGG | + | chr8_1:835739-835758 | None:intergenic | 30.0% | |
| ! | ATTTTGCTGATACTAGCAAT+AGG | - | chr8_1:835746-835765 | Msa1171210:intron | 30.0% |
| TCTATCTTGGGTTCATTTAT+AGG | + | chr8_1:835887-835906 | None:intergenic | 30.0% | |
| ! | AATTTTATGCCACTCTATCT+TGG | + | chr8_1:835984-836003 | None:intergenic | 30.0% |
| AGATAGAGTGGCATAAAATT+CGG | - | chr8_1:835984-836003 | Msa1171210:intron | 30.0% | |
| CTAGTATATGATCTCTGTTA+TGG | - | chr8_1:836040-836059 | Msa1171210:intron | 30.0% | |
| AGGTGAAAAGAGTTGTAATT+AGG | - | chr8_1:836067-836086 | Msa1171210:intron | 30.0% | |
| ATGTAACCCAGTTCTTTAAA+AGG | + | chr8_1:836287-836306 | None:intergenic | 30.0% | |
| AGCAGTGATGATATATACCT+GGG | + | chr8_1:831170-831189 | None:intergenic | 35.0% | |
| AAGCAGTGATGATATATACC+TGG | + | chr8_1:831171-831190 | None:intergenic | 35.0% | |
| ! | GTCTAGTTTCTGTACTTGAT+AGG | + | chr8_1:831246-831265 | None:intergenic | 35.0% |
| !!! | TAAGATTTTTTGCTACTGGC+TGG | - | chr8_1:831509-831528 | Msa1171210:CDS | 35.0% |
| ! | GGTTTAGGGTTATTAAGTTG+AGG | + | chr8_1:831711-831730 | None:intergenic | 35.0% |
| GGGAGGTTTGCAATAAAAAT+AGG | + | chr8_1:831732-831751 | None:intergenic | 35.0% | |
| !! | TAGACTAGCTTCTTGCTTAA+GGG | + | chr8_1:831752-831771 | None:intergenic | 35.0% |
| !! | TTAGACTAGCTTCTTGCTTA+AGG | + | chr8_1:831753-831772 | None:intergenic | 35.0% |
| ! | TTGTAGGATCAGTGCTTTTA+AGG | - | chr8_1:831983-832002 | Msa1171210:CDS | 35.0% |
| CGAATGCTAATGTCAACTAT+AGG | + | chr8_1:832044-832063 | None:intergenic | 35.0% | |
| CATAACTTTGCAGGATTTCT+TGG | + | chr8_1:832242-832261 | None:intergenic | 35.0% | |
| TCATCCAATGAAGCATGTAA+GGG | + | chr8_1:832842-832861 | None:intergenic | 35.0% | |
| TTCATCCAATGAAGCATGTA+AGG | + | chr8_1:832843-832862 | None:intergenic | 35.0% | |
| ! | AAGAGCACAAGTATCATGTA+CGG | - | chr8_1:833169-833188 | Msa1171210:intron | 35.0% |
| ! | TTGATGGCAGATAATTCACT+TGG | - | chr8_1:833299-833318 | Msa1171210:intron | 35.0% |
| TTGGAATCATATACTCACGA+AGG | + | chr8_1:833343-833362 | None:intergenic | 35.0% | |
| CAGATAGAATTTGAGTCTCT+TGG | + | chr8_1:833362-833381 | None:intergenic | 35.0% | |
| ! | GTATGATACACGTAGTTTGT+CGG | - | chr8_1:833385-833404 | Msa1171210:intron | 35.0% |
| CTCAAGAATTGGATGACAAA+AGG | - | chr8_1:833434-833453 | Msa1171210:intron | 35.0% | |
| AAGCTTAAAGGTGACAAGAA+AGG | - | chr8_1:833598-833617 | Msa1171210:CDS | 35.0% | |
| ATGTGTCCTTAATGGTGTTT+CGG | - | chr8_1:833660-833679 | Msa1171210:CDS | 35.0% | |
| TATTTAGCCTCAACTATTGG+TGG | + | chr8_1:834084-834103 | None:intergenic | 35.0% | |
| CAGTATTTAGCCTCAACTAT+TGG | + | chr8_1:834087-834106 | None:intergenic | 35.0% | |
| GGCTAAATACTGTGATGATA+CGG | - | chr8_1:834095-834114 | Msa1171210:intron | 35.0% | |
| TAGTTTGGATGCTACGTAAT+TGG | - | chr8_1:834141-834160 | Msa1171210:intron | 35.0% | |
| TAACACTAAGATCCAAGCAT+AGG | + | chr8_1:834207-834226 | None:intergenic | 35.0% | |
| ACGTTGAACGGTGATTTATA+AGG | - | chr8_1:834227-834246 | Msa1171210:CDS | 35.0% | |
| ! | TATAAGGCCTTTTGATATGC+TGG | - | chr8_1:834243-834262 | Msa1171210:CDS | 35.0% |
| GTAATCACCAGCATATCAAA+AGG | + | chr8_1:834253-834272 | None:intergenic | 35.0% | |
| TTCCAATCATTAAATGCTGC+AGG | - | chr8_1:834274-834293 | Msa1171210:intron | 35.0% | |
| AACCTGCAGCATTTAATGAT+TGG | + | chr8_1:834279-834298 | None:intergenic | 35.0% | |
| TCATTAAATGCTGCAGGTTT+AGG | - | chr8_1:834280-834299 | Msa1171210:intron | 35.0% | |
| TAACAGTCATTGTGACAATG+TGG | - | chr8_1:834382-834401 | Msa1171210:intron | 35.0% | |
| AACAGTCATTGTGACAATGT+GGG | - | chr8_1:834383-834402 | Msa1171210:intron | 35.0% | |
| CTCAAATAGTAGCACCTAAA+AGG | + | chr8_1:834437-834456 | None:intergenic | 35.0% | |
| ! | ATGCATGTTGAAAGTGTATC+AGG | - | chr8_1:834469-834488 | Msa1171210:intron | 35.0% |
| !!! | TCTTTCACATTTTTCAGGCA+TGG | + | chr8_1:834554-834573 | None:intergenic | 35.0% |
| AAATGTAAACAATTCCGGTG+TGG | - | chr8_1:834787-834806 | Msa1171210:intron | 35.0% | |
| TATGCCGCAAAAATAGTTTC+TGG | - | chr8_1:834854-834873 | Msa1171210:intron | 35.0% | |
| ATGCCGCAAAAATAGTTTCT+GGG | - | chr8_1:834855-834874 | Msa1171210:intron | 35.0% | |
| !!! | AGTCCCAGAAACTATTTTTG+CGG | + | chr8_1:834861-834880 | None:intergenic | 35.0% |
| !! | CAAAAATAGTTTCTGGGACT+TGG | - | chr8_1:834861-834880 | Msa1171210:intron | 35.0% |
| GTTTCTGTTCCTTTCATCAA+CGG | - | chr8_1:834895-834914 | Msa1171210:intron | 35.0% | |
| ! | AACTAAACACCGTTGATGAA+AGG | + | chr8_1:834907-834926 | None:intergenic | 35.0% |
| CTATTATGAACACATGCAAG+AGG | + | chr8_1:835056-835075 | None:intergenic | 35.0% | |
| CCATGAGTTAAAACAAGTAC+AGG | + | chr8_1:835122-835141 | None:intergenic | 35.0% | |
| !!! | CCTGTACTTGTTTTAACTCA+TGG | - | chr8_1:835119-835138 | Msa1171210:CDS | 35.0% |
| ATAACTCCCCCAAATATACA+CGG | + | chr8_1:835178-835197 | None:intergenic | 35.0% | |
| TGTATATTTGGGGGAGTTAT+TGG | - | chr8_1:835178-835197 | Msa1171210:CDS | 35.0% | |
| GTATATTTGGGGGAGTTATT+GGG | - | chr8_1:835179-835198 | Msa1171210:CDS | 35.0% | |
| AGAATGTTCAATGAAAGGGA+TGG | + | chr8_1:835261-835280 | None:intergenic | 35.0% | |
| GTTGATATAACTGAGTGCAA+TGG | - | chr8_1:835492-835511 | Msa1171210:intron | 35.0% | |
| ! | TCGAGATAGAGTGTTTGATT+TGG | + | chr8_1:835618-835637 | None:intergenic | 35.0% |
| CTAGCAATAGGATTTGTCAT+TGG | - | chr8_1:835758-835777 | Msa1171210:intron | 35.0% | |
| TTTATAGGACCTTCCACATT+TGG | + | chr8_1:835872-835891 | None:intergenic | 35.0% | |
| AGATTTGGACACTCTATCTT+GGG | + | chr8_1:835899-835918 | None:intergenic | 35.0% | |
| AAATCTGGAAGTTCCCAAAA+GGG | - | chr8_1:835913-835932 | Msa1171210:intron | 35.0% | |
| ! | TTTATCTTGGGTTCCCTTTT+GGG | + | chr8_1:835929-835948 | None:intergenic | 35.0% |
| !!! | AGTTTTGGACGCTTTATCTT+GGG | + | chr8_1:835941-835960 | None:intergenic | 35.0% |
| ! | TCTATCTTGGCTTCCTTTTT+AGG | + | chr8_1:835971-835990 | None:intergenic | 35.0% |
| !! | GAGTTGTAATTAGGAGTACT+TGG | - | chr8_1:836076-836095 | Msa1171210:intron | 35.0% |
| !! | ATCACTTTTGTTCCTTGCTT+TGG | - | chr8_1:836137-836156 | Msa1171210:intron | 35.0% |
| AACTGAGTATATGAGAGTGA+TGG | - | chr8_1:836311-836330 | Msa1171210:exon | 35.0% | |
| TTGGTTACCAGTACTTACTA+GGG | - | chr8_1:836350-836369 | Msa1171210:five_prime_UTR | 35.0% | |
| TCATCATCATTCATCATGGG+CGG | - | chr8_1:830992-831011 | Msa1171210:three_prime_UTR | 40.0% | |
| !! | TCCACTGATTCTAACCATAC+TGG | - | chr8_1:831019-831038 | Msa1171210:three_prime_UTR | 40.0% |
| ACCAGTATGGTTAGAATCAG+TGG | + | chr8_1:831023-831042 | None:intergenic | 40.0% | |
| GATGATATATACCTGGGAGT+GGG | + | chr8_1:831164-831183 | None:intergenic | 40.0% | |
| TGATGATATATACCTGGGAG+TGG | + | chr8_1:831165-831184 | None:intergenic | 40.0% | |
| ATAATTATGGGTGTCCGTGT+CGG | - | chr8_1:831352-831371 | Msa1171210:CDS | 40.0% | |
| TGCTTCTGAACAAGCACTTA+TGG | - | chr8_1:831679-831698 | Msa1171210:intron | 40.0% | |
| ! | GTTTGGAACCATGTTGATGT+TGG | - | chr8_1:831785-831804 | Msa1171210:intron | 40.0% |
| TGGGAAAACCAACATCAACA+TGG | + | chr8_1:831796-831815 | None:intergenic | 40.0% | |
| ! | CTGATTTTCGTGCATTCGAT+GGG | + | chr8_1:831815-831834 | None:intergenic | 40.0% |
| ! | TCTGATTTTCGTGCATTCGA+TGG | + | chr8_1:831816-831835 | None:intergenic | 40.0% |
| ACGCTTCAATTTGTAGCTTC+AGG | - | chr8_1:831835-831854 | Msa1171210:intron | 40.0% | |
| !! | ATTTTGCTGTGGAAACGCAT+CGG | - | chr8_1:831858-831877 | Msa1171210:intron | 40.0% |
| TAATGTTTCAGGGATAGTCG+AGG | - | chr8_1:832087-832106 | Msa1171210:intron | 40.0% | |
| AGACGTTAGTGAAGAAAGTG+TGG | - | chr8_1:832161-832180 | Msa1171210:CDS | 40.0% | |
| !! | TCTGCTACTGATTCTGTTGT+TGG | - | chr8_1:832192-832211 | Msa1171210:CDS | 40.0% |
| ! | CTGATTCTGTTGTTGGTGAA+AGG | - | chr8_1:832199-832218 | Msa1171210:CDS | 40.0% |
| AAACGGTCTAGTCAAAGTGA+AGG | - | chr8_1:832506-832525 | Msa1171210:intron | 40.0% | |
| CATTCACTATGGAACAGAGT+CGG | + | chr8_1:832787-832806 | None:intergenic | 40.0% | |
| TGTGGCAGTAACATTCACTA+TGG | + | chr8_1:832798-832817 | None:intergenic | 40.0% | |
| AGTGAATGTTACTGCCACAT+TGG | - | chr8_1:832799-832818 | Msa1171210:intron | 40.0% | |
| GAAAGAAGAATGTGCCAATG+TGG | + | chr8_1:832816-832835 | None:intergenic | 40.0% | |
| GGTTTGATTGTCACAGCTAT+AGG | - | chr8_1:832988-833007 | Msa1171210:intron | 40.0% | |
| ! | ACATGGACTGAAAAGGCTAA+AGG | - | chr8_1:833017-833036 | Msa1171210:intron | 40.0% |
| ATGGCAGATAATTCACTTGG+AGG | - | chr8_1:833302-833321 | Msa1171210:intron | 40.0% | |
| TGGCAGATAATTCACTTGGA+GGG | - | chr8_1:833303-833322 | Msa1171210:intron | 40.0% | |
| !! | ATGACAAAAGGTGTTCGTCA+TGG | - | chr8_1:833446-833465 | Msa1171210:intron | 40.0% |
| CAAATTCTCTATCAGGGGTA+TGG | - | chr8_1:833549-833568 | Msa1171210:intron | 40.0% | |
| TCAGAACCGAAACACCATTA+AGG | + | chr8_1:833669-833688 | None:intergenic | 40.0% | |
| ! | TGAAAATTCTGGTGGTGCTT+TGG | - | chr8_1:833696-833715 | Msa1171210:CDS | 40.0% |
| ! | TGCCCATTCCTGTCTTTTAA+AGG | - | chr8_1:833757-833776 | Msa1171210:intron | 40.0% |
| TGTCATTCCACCAATAGTTG+AGG | - | chr8_1:834074-834093 | Msa1171210:intron | 40.0% | |
| ! | TATCAGAGTGTCCGAATACA+AGG | + | chr8_1:834323-834342 | None:intergenic | 40.0% |
| AAACTAAAAAGCAGCCACAC+CGG | + | chr8_1:834804-834823 | None:intergenic | 40.0% | |
| !! | AATAGTTTCTGGGACTTGGA+AGG | - | chr8_1:834865-834884 | Msa1171210:intron | 40.0% |
| ! | TCAAAAATTTGCTCTGTCGG+TGG | + | chr8_1:835209-835228 | None:intergenic | 40.0% |
| ! | GAGCAAATTTTTGACATCCC+AGG | - | chr8_1:835215-835234 | Msa1171210:CDS | 40.0% |
| ! | CATAAGTTGAAAGGCTACCT+GGG | + | chr8_1:835235-835254 | None:intergenic | 40.0% |
| ! | ACATAAGTTGAAAGGCTACC+TGG | + | chr8_1:835236-835255 | None:intergenic | 40.0% |
| ! | GGATGGTGACATAAGTTGAA+AGG | + | chr8_1:835244-835263 | None:intergenic | 40.0% |
| CAGATTTGGACACTCTATCT+TGG | + | chr8_1:835900-835919 | None:intergenic | 40.0% | |
| ! | CAAGATAGAGTGTCCAAATC+TGG | - | chr8_1:835898-835917 | Msa1171210:intron | 40.0% |
| !! | CTTTTGGGAACTTCCAGATT+TGG | + | chr8_1:835914-835933 | None:intergenic | 40.0% |
| CAAATCTGGAAGTTCCCAAA+AGG | - | chr8_1:835912-835931 | Msa1171210:intron | 40.0% | |
| ! | CTTTATCTTGGGTTCCCTTT+TGG | + | chr8_1:835930-835949 | None:intergenic | 40.0% |
| !!! | CAGTTTTGGACGCTTTATCT+TGG | + | chr8_1:835942-835961 | None:intergenic | 40.0% |
| AAAAGGAAGCCAAGATAGAG+TGG | - | chr8_1:835972-835991 | Msa1171210:intron | 40.0% | |
| GGCATAAAATTCGGCACATA+TGG | - | chr8_1:835993-836012 | Msa1171210:intron | 40.0% | |
| ATGATCTCTGTTATGGAGCT+AGG | - | chr8_1:836047-836066 | Msa1171210:intron | 40.0% | |
| CTGCAGTGTTGTCAATTCAA+TGG | + | chr8_1:836105-836124 | None:intergenic | 40.0% | |
| TGTACAGAACTACCAAAGCA+AGG | + | chr8_1:836152-836171 | None:intergenic | 40.0% | |
| ! | TGCTTTGGTAGTTCTGTACA+CGG | - | chr8_1:836152-836171 | Msa1171210:intron | 40.0% |
| !! | TGACACGCCTTTTAAAGAAC+TGG | - | chr8_1:836277-836296 | Msa1171210:intron | 40.0% |
| !! | GACACGCCTTTTAAAGAACT+GGG | - | chr8_1:836278-836297 | Msa1171210:intron | 40.0% |
| TGAGTATATGAGAGTGATGG+TGG | - | chr8_1:836314-836333 | Msa1171210:exon | 40.0% | |
| !! | CTAGTAAGTACTGGTAACCA+AGG | + | chr8_1:836351-836370 | None:intergenic | 40.0% |
| CTTGGTTACCAGTACTTACT+AGG | - | chr8_1:836349-836368 | Msa1171210:five_prime_UTR | 40.0% | |
| GAGGATTCTGTTTGTGATCG+TGG | + | chr8_1:830876-830895 | None:intergenic | 45.0% | |
| GTCAGTGTCCGTGTCATATT+CGG | + | chr8_1:831276-831295 | None:intergenic | 45.0% | |
| ! | ACTAGCTTCTTGCTTAAGGG+AGG | + | chr8_1:831749-831768 | None:intergenic | 45.0% |
| ! | GTAGCTTCAGGATTTTGCTG+TGG | - | chr8_1:831847-831866 | Msa1171210:intron | 45.0% |
| TGAGTCTGTGGGTAGCAATT+GGG | - | chr8_1:831886-831905 | Msa1171210:intron | 45.0% | |
| ! | GTTGGTGAAAGGAAGAGACT+TGG | - | chr8_1:832210-832229 | Msa1171210:intron | 45.0% |
| CGTACCCTTACATGCTTCAT+TGG | - | chr8_1:832835-832854 | Msa1171210:intron | 45.0% | |
| AGTATGAGGCATGTTGTCTC+TGG | + | chr8_1:833068-833087 | None:intergenic | 45.0% | |
| AGAGACAACATGCCTCATAC+TGG | - | chr8_1:833067-833086 | Msa1171210:intron | 45.0% | |
| ACAACATGCCTCATACTGGT+TGG | - | chr8_1:833071-833090 | Msa1171210:intron | 45.0% | |
| CATGATACTTGTGCTCTTGC+AGG | + | chr8_1:833167-833186 | None:intergenic | 45.0% | |
| GATAATTCACTTGGAGGGAG+TGG | - | chr8_1:833308-833327 | Msa1171210:intron | 45.0% | |
| ! | AAATTCTGGTGGTGCTTTGG+AGG | - | chr8_1:833699-833718 | Msa1171210:CDS | 45.0% |
| ! | AGAGTGTCCGAATACAAGGT+AGG | + | chr8_1:834319-834338 | None:intergenic | 45.0% |
| AATGTTGGGATGGGATAGCA+GGG | - | chr8_1:834604-834623 | Msa1171210:intron | 45.0% | |
| AATATACACGGACACGAGCT+CGG | + | chr8_1:835166-835185 | None:intergenic | 45.0% | |
| AGCTCGTGTCCGTGTATATT+TGG | - | chr8_1:835166-835185 | Msa1171210:CDS | 45.0% | |
| GCTCGTGTCCGTGTATATTT+GGG | - | chr8_1:835167-835186 | Msa1171210:CDS | 45.0% | |
| CTCGTGTCCGTGTATATTTG+GGG | - | chr8_1:835168-835187 | Msa1171210:CDS | 45.0% | |
| TCGTGTCCGTGTATATTTGG+GGG | - | chr8_1:835169-835188 | Msa1171210:CDS | 45.0% | |
| ACTAGGTCATCACAGTCTGA+AGG | + | chr8_1:835328-835347 | None:intergenic | 45.0% | |
| ACTTCTCTACTGCAAGTGTG+CGG | + | chr8_1:835836-835855 | None:intergenic | 45.0% | |
| !! | TGAGAGTGATGGTGGATTGT+AGG | - | chr8_1:836322-836341 | Msa1171210:exon | 45.0% |
| AAGTTGGCCCTAGTAAGTAC+TGG | + | chr8_1:836360-836379 | None:intergenic | 45.0% | |
| !! | ATAGAAAAATAAAATAAAAA+CGG | - | chr8_1:832489-832508 | Msa1171210:intron | 5.0% |
| TCATCATTCATCATGGGCGG+TGG | - | chr8_1:830995-831014 | Msa1171210:three_prime_UTR | 50.0% | |
| GATATATACCTGGGAGTGGG+TGG | + | chr8_1:831161-831180 | None:intergenic | 50.0% | |
| CACCGACACCGAATATGACA+CGG | - | chr8_1:831265-831284 | Msa1171210:three_prime_UTR | 50.0% | |
| !! | GTCCGTGTCATATTCGGTGT+CGG | + | chr8_1:831270-831289 | None:intergenic | 50.0% |
| ! | TCCTCAGATTAGCCGTGTCT+CGG | + | chr8_1:831392-831411 | None:intergenic | 50.0% |
| GTGAGTCTGTGGGTAGCAAT+TGG | - | chr8_1:831885-831904 | Msa1171210:intron | 50.0% | |
| GATTGTCACAGCTATAGGCC+TGG | - | chr8_1:832993-833012 | Msa1171210:intron | 50.0% | |
| ACAGCTATAGGCCTGGAACA+TGG | - | chr8_1:833000-833019 | Msa1171210:intron | 50.0% | |
| ! | GCCTGGAACATGGACTGAAA+AGG | - | chr8_1:833010-833029 | Msa1171210:intron | 50.0% |
| ! | GCCTTTTCAGTCCATGTTCC+AGG | + | chr8_1:833014-833033 | None:intergenic | 50.0% |
| CACTTGGACCAACCAGTATG+AGG | + | chr8_1:833082-833101 | None:intergenic | 50.0% | |
| ! | CTCATACTGGTTGGTCCAAG+TGG | - | chr8_1:833080-833099 | Msa1171210:intron | 50.0% |
| ! | TGGTTGGTCCAAGTGGATCT+GGG | - | chr8_1:833087-833106 | Msa1171210:intron | 50.0% |
| ! | GTGCTTTTCCCAGATCCACT+TGG | + | chr8_1:833098-833117 | None:intergenic | 50.0% |
| GAATGTTGGGATGGGATAGC+AGG | - | chr8_1:834603-834622 | Msa1171210:intron | 50.0% | |
| CTACGGCAGATTCAGTCACT+AGG | + | chr8_1:835345-835364 | None:intergenic | 50.0% | |
| GTGACTGAATCTGCCGTAGT+TGG | - | chr8_1:835346-835365 | Msa1171210:intron | 50.0% | |
| !! | TGGTGGATTGTAGGACTCCT+TGG | - | chr8_1:836331-836350 | Msa1171210:five_prime_UTR | 50.0% |
| TGTCAGACACGACACCGACA+CGG | + | chr8_1:831369-831388 | None:intergenic | 55.0% | |
| TCGTGTCTGACACCGAGACA+CGG | - | chr8_1:831377-831396 | Msa1171210:CDS | 55.0% | |
| ACCGAGACACGGCTAATCTG+AGG | - | chr8_1:831388-831407 | Msa1171210:CDS | 55.0% | |
| ! | CATCGGAAGCGTGAGTCTGT+GGG | - | chr8_1:831875-831894 | Msa1171210:intron | 55.0% |
| CAGGGATAGTCGAGGTTTGC+AGG | - | chr8_1:832095-832114 | Msa1171210:intron | 55.0% | |
| ! | CTGGTTGGTCCAAGTGGATC+TGG | - | chr8_1:833086-833105 | Msa1171210:intron | 55.0% |
| !! | GTCATGGAGAGCTTGTTGCC+AGG | - | chr8_1:833462-833481 | Msa1171210:intron | 55.0% |
| GAGCTCGGTCAGAGAGTGAT+AGG | + | chr8_1:835151-835170 | None:intergenic | 55.0% | |
| CTACTGCAAGTGTGCGGTTG+AGG | + | chr8_1:835830-835849 | None:intergenic | 55.0% | |
| TCACGACACGCGTCCAAATG+TGG | - | chr8_1:835856-835875 | Msa1171210:intron | 55.0% | |
| GACACGCGTCCAAATGTGGA+AGG | - | chr8_1:835860-835879 | Msa1171210:intron | 55.0% | |
| CTGGGAGTGGGTGGAGAAGA+AGG | + | chr8_1:831152-831171 | None:intergenic | 60.0% | |
| CTTCTTCTCCACCCACTCCC+AGG | - | chr8_1:831150-831169 | Msa1171210:three_prime_UTR | 60.0% | |
| ! | GCATCGGAAGCGTGAGTCTG+TGG | - | chr8_1:831874-831893 | Msa1171210:intron | 60.0% |
| !! | CTGGTGGTGCTTTGGAGGCA+CGG | - | chr8_1:833704-833723 | Msa1171210:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 830811 | 836525 | 830811 | ID=Msa1171210;Name=Msa1171210 |
| chr8_1 | mRNA | 830811 | 836525 | 830811 | ID=Msa1171210-mRNA-1;Parent=Msa1171210;Name=Msa1171210-mRNA-1;_AED=0.08;_eAED=0.08;_QI=196|0.88|0.8|1|0.88|0.8|10|473|413 |
| chr8_1 | exon | 830811 | 830942 | 830811 | ID=Msa1171210-mRNA-1:exon:241;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 830977 | 831620 | 830977 | ID=Msa1171210-mRNA-1:exon:240;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 831901 | 832004 | 831901 | ID=Msa1171210-mRNA-1:exon:239;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 832100 | 832225 | 832100 | ID=Msa1171210-mRNA-1:exon:238;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 833558 | 833772 | 833558 | ID=Msa1171210-mRNA-1:exon:237;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 833853 | 834027 | 833853 | ID=Msa1171210-mRNA-1:exon:236;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 834151 | 834267 | 834151 | ID=Msa1171210-mRNA-1:exon:235;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 835105 | 835238 | 835105 | ID=Msa1171210-mRNA-1:exon:234;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 836165 | 836198 | 836165 | ID=Msa1171210-mRNA-1:exon:233;Parent=Msa1171210-mRNA-1 |
| chr8_1 | exon | 836296 | 836525 | 836296 | ID=Msa1171210-mRNA-1:exon:232;Parent=Msa1171210-mRNA-1 |
| chr8_1 | five_prime_UTR | 836330 | 836525 | 836330 | ID=Msa1171210-mRNA-1:five_prime_utr;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 836296 | 836329 | 836296 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 836165 | 836198 | 836165 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 835105 | 835238 | 835105 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 834151 | 834267 | 834151 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 833853 | 834027 | 833853 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 833558 | 833772 | 833558 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 832100 | 832225 | 832100 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 831901 | 832004 | 831901 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | CDS | 831318 | 831620 | 831318 | ID=Msa1171210-mRNA-1:cds;Parent=Msa1171210-mRNA-1 |
| chr8_1 | three_prime_UTR | 830977 | 831317 | 830977 | ID=Msa1171210-mRNA-1:three_prime_utr;Parent=Msa1171210-mRNA-1 |
| chr8_1 | three_prime_UTR | 830811 | 830942 | 830811 | ID=Msa1171210-mRNA-1:three_prime_utr;Parent=Msa1171210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
