Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021300 | XP_003622943.1 | 94.359 | 195 | 11 | 0 | 1 | 195 | 1 | 195 | 7.28e-135 | 387 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021300 | sp|P47192|VA722_ARATH | 72.308 | 195 | 54 | 0 | 1 | 195 | 1 | 195 | 3.18e-106 | 307 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021300 | G7L1A5 | 94.359 | 195 | 11 | 0 | 1 | 195 | 1 | 195 | 3.48e-135 | 387 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0723770 | Msa1021300 | 0.815901 | 7.290290e-52 | -8.615850e-47 |
| Msa0204140 | Msa1021300 | 0.827743 | 1.321538e-54 | -8.615850e-47 |
| Msa0442860 | Msa1021300 | 0.821124 | 4.771210e-53 | -8.615850e-47 |
| Msa1021300 | Msa1027340 | 0.806755 | 7.051997e-50 | -8.615850e-47 |
| Msa1021300 | Msa1027400 | 0.807487 | 4.934557e-50 | -8.615850e-47 |
| Msa1021300 | Msa1154570 | 0.805030 | 1.624728e-49 | -8.615850e-47 |
| Msa1021300 | Msa1157110 | 0.826431 | 2.723675e-54 | -8.615850e-47 |
| Msa1021300 | Msa1187490 | 0.807154 | 5.805081e-50 | -8.615850e-47 |
| Msa1021300 | Msa1405530 | 0.830866 | 2.307134e-55 | -8.615850e-47 |
| Msa0285890 | Msa1021300 | 0.828843 | 7.174478e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021300 | MtrunA17_Chr7g0237521 | 94.359 | 195 | 11 | 0 | 1 | 195 | 1 | 195 | 6.70e-139 | 387 |
| Msa1021300 | MtrunA17_Chr4g0010271 | 74.872 | 195 | 49 | 0 | 1 | 195 | 1 | 195 | 7.27e-111 | 316 |
| Msa1021300 | MtrunA17_Chr1g0169861 | 66.825 | 211 | 70 | 0 | 1 | 211 | 51 | 261 | 1.84e-109 | 315 |
| Msa1021300 | MtrunA17_Chr7g0237561 | 70.769 | 195 | 57 | 0 | 1 | 195 | 1 | 195 | 4.94e-104 | 299 |
| Msa1021300 | MtrunA17_Chr4g0043521 | 67.358 | 193 | 63 | 0 | 3 | 195 | 5 | 197 | 5.81e-101 | 291 |
| Msa1021300 | MtrunA17_Chr2g0296021 | 61.033 | 213 | 83 | 0 | 1 | 213 | 1 | 213 | 3.39e-100 | 289 |
| Msa1021300 | MtrunA17_Chr2g0291651 | 65.803 | 193 | 66 | 0 | 3 | 195 | 7 | 199 | 2.00e-97 | 282 |
| Msa1021300 | MtrunA17_Chr1g0210521 | 47.619 | 231 | 102 | 2 | 1 | 212 | 1 | 231 | 9.47e-80 | 238 |
| Msa1021300 | MtrunA17_Chr1g0169851 | 54.110 | 146 | 52 | 1 | 57 | 187 | 8 | 153 | 7.20e-53 | 167 |
| Msa1021300 | MtrunA17_Chr4g0010211 | 71.028 | 107 | 31 | 0 | 64 | 170 | 3 | 109 | 8.11e-53 | 165 |
| Msa1021300 | MtrunA17_Chr5g0441741 | 36.649 | 191 | 118 | 3 | 5 | 194 | 2 | 190 | 2.36e-38 | 132 |
| Msa1021300 | MtrunA17_Chr4g0026121 | 32.461 | 191 | 126 | 3 | 5 | 194 | 2 | 190 | 1.30e-36 | 127 |
| Msa1021300 | MtrunA17_Chr4g0064371 | 29.524 | 210 | 141 | 4 | 6 | 210 | 3 | 210 | 2.45e-29 | 108 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1021300 | AT2G33120.1 | 72.308 | 195 | 54 | 0 | 1 | 195 | 1 | 195 | 3.23e-107 | 307 |
| Msa1021300 | AT1G04760.2 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 3.33e-107 | 307 |
| Msa1021300 | AT1G04760.1 | 69.000 | 200 | 62 | 0 | 1 | 200 | 1 | 200 | 3.33e-107 | 307 |
| Msa1021300 | AT1G04750.1 | 71.795 | 195 | 55 | 0 | 1 | 195 | 1 | 195 | 1.17e-106 | 306 |
| Msa1021300 | AT2G33120.2 | 68.966 | 203 | 55 | 1 | 1 | 195 | 1 | 203 | 4.70e-104 | 300 |
| Msa1021300 | AT2G32670.1 | 69.744 | 195 | 59 | 0 | 1 | 195 | 66 | 260 | 9.20e-104 | 301 |
| Msa1021300 | AT4G15780.1 | 61.202 | 183 | 70 | 1 | 1 | 182 | 1 | 183 | 8.50e-83 | 244 |
| Msa1021300 | AT2G33110.1 | 60.000 | 195 | 74 | 1 | 1 | 195 | 1 | 191 | 2.58e-82 | 244 |
| Msa1021300 | AT3G54300.3 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 9.02e-79 | 236 |
| Msa1021300 | AT3G54300.2 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 9.02e-79 | 236 |
| Msa1021300 | AT3G54300.1 | 48.069 | 233 | 98 | 2 | 1 | 212 | 1 | 231 | 9.02e-79 | 236 |
| Msa1021300 | AT2G33110.2 | 62.500 | 168 | 63 | 0 | 1 | 168 | 1 | 168 | 9.82e-76 | 226 |
| Msa1021300 | AT1G04750.2 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.46e-58 | 181 |
| Msa1021300 | AT1G04750.4 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.46e-58 | 181 |
| Msa1021300 | AT1G04750.3 | 70.940 | 117 | 34 | 0 | 79 | 195 | 1 | 117 | 1.46e-58 | 181 |
| Msa1021300 | AT5G11150.1 | 33.649 | 211 | 133 | 4 | 5 | 213 | 2 | 207 | 3.78e-39 | 134 |
| Msa1021300 | AT5G22360.1 | 32.536 | 209 | 136 | 4 | 5 | 211 | 2 | 207 | 4.12e-39 | 134 |
| Msa1021300 | AT5G11150.2 | 33.649 | 211 | 133 | 4 | 5 | 213 | 2 | 207 | 6.72e-39 | 134 |
| Msa1021300 | AT4G32150.1 | 34.211 | 190 | 122 | 3 | 5 | 193 | 2 | 189 | 9.28e-35 | 123 |
| Msa1021300 | AT2G25340.1 | 32.105 | 190 | 126 | 3 | 5 | 193 | 2 | 189 | 3.99e-32 | 116 |
| Msa1021300 | AT2G33120.3 | 67.742 | 62 | 20 | 0 | 134 | 195 | 52 | 113 | 4.77e-22 | 88.2 |
| Msa1021300 | AT3G24890.2 | 45.745 | 94 | 45 | 2 | 113 | 200 | 14 | 107 | 2.78e-18 | 77.8 |
Find 41 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAAGCTTGAATAAAGAATT+TGG | 0.138378 | 7_1:-45604020 | Msa1021300:CDS |
| CTTTGCAGGCACAAGATTTA+AGG | 0.164312 | 7_1:-45603326 | Msa1021300:intron |
| GCAAGTTTGCTAACCTCTTC+TGG | 0.229459 | 7_1:+45603853 | None:intergenic |
| CAATCTTCACTTGACGATTA+AGG | 0.242055 | 7_1:+45603678 | None:intergenic |
| AGCTATTTCAGCAAAGTTTC+CGG | 0.255031 | 7_1:+45604525 | None:intergenic |
| TGCATATGCTCCTTCAATTT+CGG | 0.281591 | 7_1:+45603892 | None:intergenic |
| GGCGCGTGGCACGGTGATTC+TGG | 0.320729 | 7_1:-45604566 | Msa1021300:CDS |
| TGGTTGCTGGGAGTCTTTGC+AGG | 0.323885 | 7_1:+45604494 | None:intergenic |
| AAAGCTTGAATAAAGAATTT+GGG | 0.394970 | 7_1:-45604019 | Msa1021300:intron |
| TCCGGTGAAGTTGGTGTGCT+CGG | 0.407070 | 7_1:+45604543 | None:intergenic |
| AACTGTCAACCTTCGTGATC+AGG | 0.421098 | 7_1:-45603639 | Msa1021300:intron |
| TTTGCAGGCACAAGATTTAA+GGG | 0.423640 | 7_1:-45603325 | Msa1021300:intron |
| CAAGAAAGGCCATAGCAATA+TGG | 0.430285 | 7_1:+45604105 | None:intergenic |
| ATCACTTATATACAGCTTTG+TGG | 0.443785 | 7_1:-45604587 | Msa1021300:CDS |
| TATGTTGGAAAATATTGATC+AGG | 0.458760 | 7_1:-45603794 | Msa1021300:intron |
| CTCCTTGATGTGATCAAGAA+AGG | 0.487927 | 7_1:+45604091 | None:intergenic |
| AGCTTACTGCCTTGTTGCTG+TGG | 0.489435 | 7_1:-45604141 | Msa1021300:CDS |
| TCAAGTTCAAGATGTTATGT+TGG | 0.490196 | 7_1:-45603809 | Msa1021300:CDS |
| AGCAAAGTTTCCGGTGAAGT+TGG | 0.500993 | 7_1:+45604534 | None:intergenic |
| CAGCTTTGTGGCGCGTGGCA+CGG | 0.506415 | 7_1:-45604575 | Msa1021300:CDS |
| GTAATTTAGACCGAAATTGA+AGG | 0.508592 | 7_1:-45603902 | Msa1021300:intron |
| GGCAAGTACTGAATCCATCA+TGG | 0.518155 | 7_1:+45604422 | None:intergenic |
| GCCGAGCACACCAACTTCAC+CGG | 0.518367 | 7_1:-45604544 | Msa1021300:CDS |
| GGCCTTTCTTGATCACATCA+AGG | 0.528346 | 7_1:-45604093 | Msa1021300:CDS |
| TTCAACTACCTCGCCCATGA+TGG | 0.533919 | 7_1:-45604436 | Msa1021300:CDS |
| ATCATGGGCGAGGTAGTTGA+AGG | 0.542753 | 7_1:+45604438 | None:intergenic |
| ACTTGCGAAAGTAAAAGCTC+AGG | 0.550493 | 7_1:-45603836 | Msa1021300:CDS |
| TACTGAATCCATCATGGGCG+AGG | 0.571090 | 7_1:+45604428 | None:intergenic |
| ATATACAGCTTTGTGGCGCG+TGG | 0.589934 | 7_1:-45604580 | Msa1021300:CDS |
| TTTACCAAAAGATATGGTGG+AGG | 0.594903 | 7_1:-45604065 | Msa1021300:CDS |
| TGCAGGCACAAGATTTAAGG+GGG | 0.606935 | 7_1:-45603323 | Msa1021300:intron |
| TTGCAGGCACAAGATTTAAG+GGG | 0.610788 | 7_1:-45603324 | Msa1021300:intron |
| GGCAATTAAGGAGAAAGATG+TGG | 0.621585 | 7_1:-45603293 | Msa1021300:CDS |
| CAAAAGACTCCACAGCAACA+AGG | 0.623781 | 7_1:+45604132 | None:intergenic |
| GTAGTTGAAGGTATGACCAT+CGG | 0.631667 | 7_1:+45604450 | None:intergenic |
| GCAAGTACTGAATCCATCAT+GGG | 0.632742 | 7_1:+45604423 | None:intergenic |
| TTGTGTGGAACATCCAGAAG+AGG | 0.637264 | 7_1:-45603866 | Msa1021300:CDS |
| AAATTCACTTACAACACCGA+TGG | 0.653817 | 7_1:-45604466 | Msa1021300:CDS |
| CTTTCTTGATCACATCAAGG+AGG | 0.668827 | 7_1:-45604090 | Msa1021300:CDS |
| GGAGCATATGCAATATTGTG+TGG | 0.672159 | 7_1:-45603881 | Msa1021300:CDS |
| ATAAAAGGACCTGATCACGA+AGG | 0.753478 | 7_1:+45603630 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTATTGTATATGCA+TGG | - | chr7_1:45603886-45603905 | Msa1021300:CDS | 15.0% |
| !! | CAATGTAATTTAGTTATTTA+TGG | + | chr7_1:45604380-45604399 | None:intergenic | 15.0% |
| !!! | TTTTTTTTATTGTATATGCA+TGG | - | chr7_1:45603886-45603905 | Msa1021300:CDS | 15.0% |
| !! | CAATGTAATTTAGTTATTTA+TGG | + | chr7_1:45604380-45604399 | None:intergenic | 15.0% |
| !! | TAAAAGAAAAAGATAAAACG+AGG | + | chr7_1:45603412-45603431 | None:intergenic | 20.0% |
| !!! | TCTTTTACATAATCTAATTG+TGG | - | chr7_1:45603425-45603444 | Msa1021300:intron | 20.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | - | chr7_1:45603790-45603809 | Msa1021300:intron | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | - | chr7_1:45603791-45603810 | Msa1021300:intron | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | - | chr7_1:45604036-45604055 | Msa1021300:CDS | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | + | chr7_1:45604198-45604217 | None:intergenic | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr7_1:45604450-45604469 | Msa1021300:CDS | 20.0% |
| !! | TAAAAGAAAAAGATAAAACG+AGG | + | chr7_1:45603412-45603431 | None:intergenic | 20.0% |
| !!! | TCTTTTACATAATCTAATTG+TGG | - | chr7_1:45603425-45603444 | Msa1021300:intron | 20.0% |
| !! | AAAAGCTTGAATAAAGAATT+TGG | - | chr7_1:45603790-45603809 | Msa1021300:intron | 20.0% |
| !! | AAAGCTTGAATAAAGAATTT+GGG | - | chr7_1:45603791-45603810 | Msa1021300:intron | 20.0% |
| !! | AGGTATATATATGTCTATAT+TGG | - | chr7_1:45604036-45604055 | Msa1021300:CDS | 20.0% |
| !! | TTTATGGATGAACAAATAAA+AGG | + | chr7_1:45604198-45604217 | None:intergenic | 20.0% |
| !! | TTATAGTTATGTAACTGATA+TGG | - | chr7_1:45604450-45604469 | Msa1021300:CDS | 20.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr7_1:45603578-45603597 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | - | chr7_1:45604016-45604035 | Msa1021300:intron | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | - | chr7_1:45604108-45604127 | Msa1021300:CDS | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | - | chr7_1:45604334-45604353 | Msa1021300:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | - | chr7_1:45604335-45604354 | Msa1021300:intron | 25.0% |
| ! | CAAATCATAAATTTCCTTAG+AGG | + | chr7_1:45603578-45603597 | None:intergenic | 25.0% |
| ! | TATGTTGGAAAATATTGATC+AGG | - | chr7_1:45604016-45604035 | Msa1021300:intron | 25.0% |
| !!! | ATTTTATTTGTTTTGTCTGC+AGG | - | chr7_1:45604108-45604127 | Msa1021300:CDS | 25.0% |
| !! | ATTTTTACACACACATGAAT+AGG | - | chr7_1:45604334-45604353 | Msa1021300:intron | 25.0% |
| !! | TTTTTACACACACATGAATA+GGG | - | chr7_1:45604335-45604354 | Msa1021300:intron | 25.0% |
| ATCACTTATATACAGCTTTG+TGG | - | chr7_1:45603223-45603242 | Msa1021300:CDS | 30.0% | |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr7_1:45603339-45603358 | None:intergenic | 30.0% |
| TCAAATGCATTTACATGTAC+TGG | - | chr7_1:45603531-45603550 | Msa1021300:intron | 30.0% | |
| ! | GAGGATTTTACCAAAAGATA+TGG | - | chr7_1:45603739-45603758 | Msa1021300:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGG+TGG | - | chr7_1:45603742-45603761 | Msa1021300:intron | 30.0% |
| GTAATTTAGACCGAAATTGA+AGG | - | chr7_1:45603908-45603927 | Msa1021300:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | - | chr7_1:45604001-45604020 | Msa1021300:intron | 30.0% | |
| !! | AGTGAAGATTGATGTTTTGA+TGG | - | chr7_1:45604144-45604163 | Msa1021300:intron | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | - | chr7_1:45604336-45604355 | Msa1021300:intron | 30.0% |
| TAACTGATATGGTTTGAATG+TGG | - | chr7_1:45604461-45604480 | Msa1021300:CDS | 30.0% | |
| ATCACTTATATACAGCTTTG+TGG | - | chr7_1:45603223-45603242 | Msa1021300:CDS | 30.0% | |
| ! | GTTGTAAGTGAATTTTGTGT+TGG | + | chr7_1:45603339-45603358 | None:intergenic | 30.0% |
| TCAAATGCATTTACATGTAC+TGG | - | chr7_1:45603531-45603550 | Msa1021300:intron | 30.0% | |
| ! | GAGGATTTTACCAAAAGATA+TGG | - | chr7_1:45603739-45603758 | Msa1021300:intron | 30.0% |
| ! | GATTTTACCAAAAGATATGG+TGG | - | chr7_1:45603742-45603761 | Msa1021300:intron | 30.0% |
| GTAATTTAGACCGAAATTGA+AGG | - | chr7_1:45603908-45603927 | Msa1021300:intron | 30.0% | |
| TCAAGTTCAAGATGTTATGT+TGG | - | chr7_1:45604001-45604020 | Msa1021300:intron | 30.0% | |
| !! | AGTGAAGATTGATGTTTTGA+TGG | - | chr7_1:45604144-45604163 | Msa1021300:intron | 30.0% |
| ! | TTTTACACACACATGAATAG+GGG | - | chr7_1:45604336-45604355 | Msa1021300:intron | 30.0% |
| TAACTGATATGGTTTGAATG+TGG | - | chr7_1:45604461-45604480 | Msa1021300:CDS | 30.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+CGG | + | chr7_1:45603288-45603307 | None:intergenic | 35.0% |
| !!! | TGAATTTTGTGTTGGTTGCT+GGG | + | chr7_1:45603331-45603350 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr7_1:45603344-45603363 | Msa1021300:intron | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | - | chr7_1:45603457-45603476 | Msa1021300:intron | 35.0% | |
| !! | TACATGTACTGGTTTCATGT+CGG | - | chr7_1:45603542-45603561 | Msa1021300:intron | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | - | chr7_1:45603696-45603715 | Msa1021300:intron | 35.0% |
| TTTACCAAAAGATATGGTGG+AGG | - | chr7_1:45603745-45603764 | Msa1021300:intron | 35.0% | |
| ! | TTTTCCTCCACCATATCTTT+TGG | + | chr7_1:45603752-45603771 | None:intergenic | 35.0% |
| TGCATATGCTCCTTCAATTT+CGG | + | chr7_1:45603921-45603940 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | - | chr7_1:45604045-45604064 | Msa1021300:CDS | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | + | chr7_1:45604135-45604154 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | + | chr7_1:45604214-45604233 | None:intergenic | 35.0% | |
| ATAAACCATGTGTCATAGCT+AGG | - | chr7_1:45604213-45604232 | Msa1021300:intron | 35.0% | |
| TAAACCATGTGTCATAGCTA+GGG | - | chr7_1:45604214-45604233 | Msa1021300:intron | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | - | chr7_1:45604485-45604504 | Msa1021300:CDS | 35.0% | |
| ! | AGCTATTTCAGCAAAGTTTC+CGG | + | chr7_1:45603288-45603307 | None:intergenic | 35.0% |
| !!! | TGAATTTTGTGTTGGTTGCT+GGG | + | chr7_1:45603331-45603350 | None:intergenic | 35.0% |
| AAATTCACTTACAACACCGA+TGG | - | chr7_1:45603344-45603363 | Msa1021300:intron | 35.0% | |
| TCAATGCAATGCGATATATG+AGG | - | chr7_1:45603457-45603476 | Msa1021300:intron | 35.0% | |
| !! | TACATGTACTGGTTTCATGT+CGG | - | chr7_1:45603542-45603561 | Msa1021300:intron | 35.0% |
| ! | TTTTGATCGCCATATTGCTA+TGG | - | chr7_1:45603696-45603715 | Msa1021300:intron | 35.0% |
| TTTACCAAAAGATATGGTGG+AGG | - | chr7_1:45603745-45603764 | Msa1021300:intron | 35.0% | |
| ! | TTTTCCTCCACCATATCTTT+TGG | + | chr7_1:45603752-45603771 | None:intergenic | 35.0% |
| TGCATATGCTCCTTCAATTT+CGG | + | chr7_1:45603921-45603940 | None:intergenic | 35.0% | |
| TATGTCTATATTGGATCCTC+TGG | - | chr7_1:45604045-45604064 | Msa1021300:CDS | 35.0% | |
| CAATCTTCACTTGACGATTA+AGG | + | chr7_1:45604135-45604154 | None:intergenic | 35.0% | |
| TAGCTATGACACATGGTTTA+TGG | + | chr7_1:45604214-45604233 | None:intergenic | 35.0% | |
| ATAAACCATGTGTCATAGCT+AGG | - | chr7_1:45604213-45604232 | Msa1021300:intron | 35.0% | |
| TAAACCATGTGTCATAGCTA+GGG | - | chr7_1:45604214-45604233 | Msa1021300:intron | 35.0% | |
| TTTGCAGGCACAAGATTTAA+GGG | - | chr7_1:45604485-45604504 | Msa1021300:CDS | 35.0% | |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | + | chr7_1:45603332-45603351 | None:intergenic | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr7_1:45603363-45603382 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | + | chr7_1:45603390-45603409 | None:intergenic | 40.0% |
| CAAGAAAGGCCATAGCAATA+TGG | + | chr7_1:45603708-45603727 | None:intergenic | 40.0% | |
| CTCCTTGATGTGATCAAGAA+AGG | + | chr7_1:45603722-45603741 | None:intergenic | 40.0% | |
| CTTTCTTGATCACATCAAGG+AGG | - | chr7_1:45603720-45603739 | Msa1021300:intron | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | - | chr7_1:45603929-45603948 | Msa1021300:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr7_1:45603974-45603993 | Msa1021300:intron | 40.0% | |
| AACGATCTGTGCTTCAAAGT+CGG | + | chr7_1:45604073-45604092 | None:intergenic | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | + | chr7_1:45604183-45604202 | None:intergenic | 40.0% | |
| ! | CAGTACTATGTTTTCTGCGA+TGG | + | chr7_1:45604265-45604284 | None:intergenic | 40.0% |
| CTTTGCAGGCACAAGATTTA+AGG | - | chr7_1:45604484-45604503 | Msa1021300:CDS | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | - | chr7_1:45604486-45604505 | Msa1021300:CDS | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | - | chr7_1:45604496-45604515 | Msa1021300:CDS | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | - | chr7_1:45604517-45604536 | Msa1021300:CDS | 40.0% | |
| !!! | GTGAATTTTGTGTTGGTTGC+TGG | + | chr7_1:45603332-45603351 | None:intergenic | 40.0% |
| ! | GTAGTTGAAGGTATGACCAT+CGG | + | chr7_1:45603363-45603382 | None:intergenic | 40.0% |
| !! | GCAAGTACTGAATCCATCAT+GGG | + | chr7_1:45603390-45603409 | None:intergenic | 40.0% |
| CAAGAAAGGCCATAGCAATA+TGG | + | chr7_1:45603708-45603727 | None:intergenic | 40.0% | |
| CTCCTTGATGTGATCAAGAA+AGG | + | chr7_1:45603722-45603741 | None:intergenic | 40.0% | |
| CTTTCTTGATCACATCAAGG+AGG | - | chr7_1:45603720-45603739 | Msa1021300:intron | 40.0% | |
| GGAGCATATGCAATATTGTG+TGG | - | chr7_1:45603929-45603948 | Msa1021300:intron | 40.0% | |
| ACTTGCGAAAGTAAAAGCTC+AGG | - | chr7_1:45603974-45603993 | Msa1021300:intron | 40.0% | |
| AACGATCTGTGCTTCAAAGT+CGG | + | chr7_1:45604073-45604092 | None:intergenic | 40.0% | |
| ATAAAAGGACCTGATCACGA+AGG | + | chr7_1:45604183-45604202 | None:intergenic | 40.0% | |
| ! | CAGTACTATGTTTTCTGCGA+TGG | + | chr7_1:45604265-45604284 | None:intergenic | 40.0% |
| CTTTGCAGGCACAAGATTTA+AGG | - | chr7_1:45604484-45604503 | Msa1021300:CDS | 40.0% | |
| TTGCAGGCACAAGATTTAAG+GGG | - | chr7_1:45604486-45604505 | Msa1021300:CDS | 40.0% | |
| AAGATTTAAGGGGGAATGCA+GGG | - | chr7_1:45604496-45604515 | Msa1021300:CDS | 40.0% | |
| GGCAATTAAGGAGAAAGATG+TGG | - | chr7_1:45604517-45604536 | Msa1021300:CDS | 40.0% | |
| AGCAAAGTTTCCGGTGAAGT+TGG | + | chr7_1:45603279-45603298 | None:intergenic | 45.0% | |
| !! | GGCAAGTACTGAATCCATCA+TGG | + | chr7_1:45603391-45603410 | None:intergenic | 45.0% |
| GCAATGCGATATATGAGGCA+CGG | - | chr7_1:45603462-45603481 | Msa1021300:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr7_1:45603561-45603580 | Msa1021300:intron | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | + | chr7_1:45603681-45603700 | None:intergenic | 45.0% | |
| GGCCTTTCTTGATCACATCA+AGG | - | chr7_1:45603717-45603736 | Msa1021300:intron | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr7_1:45603944-45603963 | Msa1021300:intron | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr7_1:45603960-45603979 | None:intergenic | 45.0% |
| AACTGTCAACCTTCGTGATC+AGG | - | chr7_1:45604171-45604190 | Msa1021300:intron | 45.0% | |
| TCATCCCTAGCTATGACACA+TGG | + | chr7_1:45604221-45604240 | None:intergenic | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | - | chr7_1:45604470-45604489 | Msa1021300:CDS | 45.0% |
| TGCAGGCACAAGATTTAAGG+GGG | - | chr7_1:45604487-45604506 | Msa1021300:CDS | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | - | chr7_1:45604495-45604514 | Msa1021300:CDS | 45.0% | |
| AGCAAAGTTTCCGGTGAAGT+TGG | + | chr7_1:45603279-45603298 | None:intergenic | 45.0% | |
| !! | GGCAAGTACTGAATCCATCA+TGG | + | chr7_1:45603391-45603410 | None:intergenic | 45.0% |
| GCAATGCGATATATGAGGCA+CGG | - | chr7_1:45603462-45603481 | Msa1021300:intron | 45.0% | |
| TCGGACATTGAACACCTCTA+AGG | - | chr7_1:45603561-45603580 | Msa1021300:intron | 45.0% | |
| CAAAAGACTCCACAGCAACA+AGG | + | chr7_1:45603681-45603700 | None:intergenic | 45.0% | |
| GGCCTTTCTTGATCACATCA+AGG | - | chr7_1:45603717-45603736 | Msa1021300:intron | 45.0% | |
| TTGTGTGGAACATCCAGAAG+AGG | - | chr7_1:45603944-45603963 | Msa1021300:intron | 45.0% | |
| !! | GCAAGTTTGCTAACCTCTTC+TGG | + | chr7_1:45603960-45603979 | None:intergenic | 45.0% |
| AACTGTCAACCTTCGTGATC+AGG | - | chr7_1:45604171-45604190 | Msa1021300:intron | 45.0% | |
| TCATCCCTAGCTATGACACA+TGG | + | chr7_1:45604221-45604240 | None:intergenic | 45.0% | |
| ! | TGGTTTGAATGTGGCTTTGC+AGG | - | chr7_1:45604470-45604489 | Msa1021300:CDS | 45.0% |
| TGCAGGCACAAGATTTAAGG+GGG | - | chr7_1:45604487-45604506 | Msa1021300:CDS | 45.0% | |
| CAAGATTTAAGGGGGAATGC+AGG | - | chr7_1:45604495-45604514 | Msa1021300:CDS | 45.0% | |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr7_1:45603230-45603249 | Msa1021300:CDS | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr7_1:45603375-45603394 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr7_1:45603374-45603393 | Msa1021300:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr7_1:45603385-45603404 | None:intergenic | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | - | chr7_1:45603669-45603688 | Msa1021300:CDS | 50.0% |
| ! | ATATACAGCTTTGTGGCGCG+TGG | - | chr7_1:45603230-45603249 | Msa1021300:CDS | 50.0% |
| ATCATGGGCGAGGTAGTTGA+AGG | + | chr7_1:45603375-45603394 | None:intergenic | 50.0% | |
| TTCAACTACCTCGCCCATGA+TGG | - | chr7_1:45603374-45603393 | Msa1021300:intron | 50.0% | |
| TACTGAATCCATCATGGGCG+AGG | + | chr7_1:45603385-45603404 | None:intergenic | 50.0% | |
| ! | AGCTTACTGCCTTGTTGCTG+TGG | - | chr7_1:45603669-45603688 | Msa1021300:CDS | 50.0% |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr7_1:45603270-45603289 | None:intergenic | 55.0% |
| TGGTTGCTGGGAGTCTTTGC+AGG | + | chr7_1:45603319-45603338 | None:intergenic | 55.0% | |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | + | chr7_1:45604064-45604083 | None:intergenic | 55.0% |
| GGGGGAATGCAGGGCAATTA+AGG | - | chr7_1:45604505-45604524 | Msa1021300:CDS | 55.0% | |
| !! | TCCGGTGAAGTTGGTGTGCT+CGG | + | chr7_1:45603270-45603289 | None:intergenic | 55.0% |
| TGGTTGCTGGGAGTCTTTGC+AGG | + | chr7_1:45603319-45603338 | None:intergenic | 55.0% | |
| ! | TGCTTCAAAGTCGGCTCCAG+AGG | + | chr7_1:45604064-45604083 | None:intergenic | 55.0% |
| GGGGGAATGCAGGGCAATTA+AGG | - | chr7_1:45604505-45604524 | Msa1021300:CDS | 55.0% | |
| GCCGAGCACACCAACTTCAC+CGG | - | chr7_1:45603266-45603285 | Msa1021300:CDS | 60.0% | |
| GCCGAGCACACCAACTTCAC+CGG | - | chr7_1:45603266-45603285 | Msa1021300:CDS | 60.0% | |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr7_1:45603235-45603254 | Msa1021300:CDS | 65.0% |
| ! | CAGCTTTGTGGCGCGTGGCA+CGG | - | chr7_1:45603235-45603254 | Msa1021300:CDS | 65.0% |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr7_1:45603244-45603263 | Msa1021300:CDS | 70.0% | |
| GGCGCGTGGCACGGTGATTC+TGG | - | chr7_1:45603244-45603263 | Msa1021300:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 45603212 | 45604620 | 45603212 | ID=Msa1021300;Name=Msa1021300 |
| chr7_1 | mRNA | 45603212 | 45604620 | 45603212 | ID=Msa1021300-mRNA-1;Parent=Msa1021300;Name=Msa1021300-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.5|0.2|1|1|1|5|0|214 |
| chr7_1 | exon | 45604431 | 45604620 | 45604431 | ID=Msa1021300-mRNA-1:exon:9024;Parent=Msa1021300-mRNA-1 |
| chr7_1 | exon | 45604020 | 45604161 | 45604020 | ID=Msa1021300-mRNA-1:exon:9023;Parent=Msa1021300-mRNA-1 |
| chr7_1 | exon | 45603795 | 45603915 | 45603795 | ID=Msa1021300-mRNA-1:exon:9022;Parent=Msa1021300-mRNA-1 |
| chr7_1 | exon | 45603640 | 45603702 | 45603640 | ID=Msa1021300-mRNA-1:exon:9021;Parent=Msa1021300-mRNA-1 |
| chr7_1 | exon | 45603212 | 45603340 | 45603212 | ID=Msa1021300-mRNA-1:exon:9020;Parent=Msa1021300-mRNA-1 |
| chr7_1 | CDS | 45604431 | 45604620 | 45604431 | ID=Msa1021300-mRNA-1:cds;Parent=Msa1021300-mRNA-1 |
| chr7_1 | CDS | 45604020 | 45604161 | 45604020 | ID=Msa1021300-mRNA-1:cds;Parent=Msa1021300-mRNA-1 |
| chr7_1 | CDS | 45603795 | 45603915 | 45603795 | ID=Msa1021300-mRNA-1:cds;Parent=Msa1021300-mRNA-1 |
| chr7_1 | CDS | 45603640 | 45603702 | 45603640 | ID=Msa1021300-mRNA-1:cds;Parent=Msa1021300-mRNA-1 |
| chr7_1 | CDS | 45603212 | 45603340 | 45603212 | ID=Msa1021300-mRNA-1:cds;Parent=Msa1021300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
