AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027340 MtrunA17_Chr7g0245631 99.301 286 2 0 1 286 41 326 0.0 582
Msa1027340 MtrunA17_Chr7g0245741 68.531 286 90 0 1 286 41 326 1.93e-148 419
Msa1027340 MtrunA17_Chr7g0245691 65.625 288 96 1 2 286 43 330 7.87e-143 404
Msa1027340 MtrunA17_Chr7g0245711 66.084 286 97 0 1 286 3 288 1.98e-142 402
Msa1027340 MtrunA17_Chr7g0245731 66.084 286 97 0 1 286 91 376 1.39e-140 400
Msa1027340 MtrunA17_Chr7g0245671 65.278 288 97 1 2 286 42 329 1.99e-140 398
Msa1027340 MtrunA17_Chr7g0245641 65.157 287 98 1 2 286 80 366 5.26e-140 399
Msa1027340 MtrunA17_Chr4g0010991 48.958 288 145 2 1 286 42 329 1.80e-90 271
Msa1027340 MtrunA17_Chr1g0155411 42.215 289 155 3 4 286 43 325 3.52e-78 240
Msa1027340 MtrunA17_Chr1g0155431 42.466 292 156 3 1 286 40 325 1.96e-77 238
Msa1027340 MtrunA17_Chr4g0048961 36.101 277 165 3 18 284 62 336 3.56e-59 192
Msa1027340 MtrunA17_Chr4g0042101 32.660 297 177 5 9 286 61 353 1.66e-53 177
Msa1027340 MtrunA17_Chr2g0331211 37.113 291 168 7 2 286 38 319 3.96e-50 168
Msa1027340 MtrunA17_Chr8g0364051 34.138 290 173 6 4 286 43 321 3.43e-43 150
Msa1027340 MtrunA17_Chr8g0363831 34.629 283 171 6 6 283 46 319 4.58e-42 147
Msa1027340 MtrunA17_Chr5g0423551 32.394 284 184 5 6 286 41 319 1.98e-41 145
Msa1027340 MtrunA17_Chr4g0039321 36.752 234 141 3 6 236 46 275 4.61e-41 144
Msa1027340 MtrunA17_Chr2g0281991 32.558 301 178 8 6 286 45 340 1.21e-39 141
Msa1027340 MtrunA17_Chr3g0077231 35.169 236 146 3 4 236 41 272 1.82e-39 140
Msa1027340 MtrunA17_Chr3g0077221 35.593 236 145 4 4 236 45 276 6.58e-38 136
Msa1027340 MtrunA17_Chr5g0431311 33.449 287 182 6 3 286 39 319 8.28e-37 133
Msa1027340 MtrunA17_Chr3g0106111 31.142 289 190 6 1 286 37 319 1.40e-36 132
Msa1027340 MtrunA17_Chr4g0039311 34.188 234 147 3 6 236 48 277 6.70e-36 131
Msa1027340 MtrunA17_Chr2g0282001 29.333 300 185 6 6 284 44 337 2.27e-34 127
Msa1027340 MtrunA17_Chr7g0275521 31.333 300 184 9 6 286 44 340 1.39e-32 122
Msa1027340 MtrunA17_Chr2g0282011 31.104 299 181 8 6 284 45 338 5.64e-31 118
Msa1027340 MtrunA17_Chr4g0002661 31.206 282 180 10 9 286 52 323 1.11e-30 117
Msa1027340 MtrunA17_Chr2g0291541 31.944 288 183 9 5 286 46 326 3.40e-30 115
Msa1027340 MtrunA17_Chr2g0333781 32.624 282 175 11 9 286 59 329 1.09e-29 114
Msa1027340 MtrunA17_Chr4g0001321 30.249 281 183 9 9 286 56 326 2.40e-28 111
Msa1027340 MtrunA17_Chr4g0002961 31.119 286 175 9 9 286 52 323 9.23e-26 103
Msa1027340 MtrunA17_Chr5g0411071 26.818 220 142 5 16 230 55 260 5.63e-16 76.6
Msa1027340 MtrunA17_Chr6g0450211 25.514 243 155 6 6 228 79 315 2.78e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027340 AT2G45400.3 47.931 290 144 4 3 286 19 307 8.61e-89 267
Msa1027340 AT2G45400.1 47.931 290 144 4 3 286 76 364 7.30e-88 266
Msa1027340 AT5G42800.1 42.907 289 153 4 4 286 43 325 2.45e-76 238
Msa1027340 AT2G45400.2 48.361 244 120 3 3 240 76 319 7.46e-74 229
Msa1027340 AT1G61720.1 36.913 298 171 7 1 286 45 337 3.20e-62 200
Msa1027340 AT4G35420.1 40.278 288 160 7 3 286 42 321 5.68e-58 189
Msa1027340 AT2G45400.4 50.279 179 84 2 3 176 76 254 1.27e-53 175
Msa1027340 AT2G02400.1 34.266 286 177 7 5 286 40 318 2.58e-43 150
Msa1027340 AT4G27250.2 30.403 273 177 4 16 277 57 327 4.05e-41 145
Msa1027340 AT1G09510.1 35.915 284 173 5 3 283 42 319 2.25e-40 143
Msa1027340 AT1G09480.2 35.192 287 177 6 3 286 42 322 3.30e-40 142
Msa1027340 AT1G09480.1 35.192 287 177 6 3 286 89 369 8.48e-40 142
Msa1027340 AT4G27250.1 29.537 281 179 4 16 277 57 337 1.09e-39 142
Msa1027340 AT1G66800.1 33.569 283 181 6 4 286 43 318 1.43e-39 140
Msa1027340 AT1G51410.1 32.639 288 181 6 4 286 44 323 1.76e-39 140
Msa1027340 AT5G19440.1 33.449 287 178 5 4 285 45 323 2.20e-39 140
Msa1027340 AT1G25460.1 32.281 285 184 5 6 286 40 319 1.07e-38 138
Msa1027340 AT5G58490.1 33.448 290 182 7 1 286 41 323 2.19e-38 137
Msa1027340 AT1G09490.2 33.910 289 182 6 1 286 9 291 2.20e-38 137
Msa1027340 AT1G68540.1 31.818 286 185 6 6 286 41 321 9.54e-38 136
Msa1027340 AT1G09490.1 33.798 287 181 6 3 286 42 322 2.34e-37 135
Msa1027340 AT1G09500.2 34.583 240 149 5 1 236 6 241 1.17e-32 122
Msa1027340 AT1G09500.3 34.034 238 149 4 3 236 42 275 4.64e-32 120
Msa1027340 AT1G09500.1 34.034 238 149 4 3 236 42 275 1.06e-31 120
Msa1027340 AT1G15950.3 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1027340 AT1G15950.1 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1027340 AT2G33590.1 33.571 280 165 10 7 278 46 312 7.18e-30 115
Msa1027340 AT1G76470.1 31.365 271 181 4 9 277 46 313 2.31e-29 114
Msa1027340 AT1G80820.1 32.056 287 174 11 7 286 45 317 4.03e-29 113
Msa1027340 AT1G15950.2 32.222 270 173 6 7 274 50 311 1.08e-28 112
Msa1027340 AT2G33600.1 38.559 236 129 7 7 234 46 273 6.82e-28 110
Msa1027340 AT1G68540.2 31.507 219 141 5 72 286 1 214 9.73e-26 101
Msa1027340 AT1G15950.6 33.761 234 145 6 7 238 50 275 2.95e-25 102
Msa1027340 AT1G15950.4 33.761 234 145 6 7 238 50 275 3.81e-25 102
Msa1027340 AT1G15950.5 33.761 234 145 6 7 238 50 275 4.21e-25 101
Msa1027340 AT1G80820.2 33.054 239 140 9 7 238 45 270 3.67e-24 99.0
Msa1027340 AT1G15950.7 30.357 224 149 5 65 286 6 224 4.24e-17 79.3
Msa1027340 AT5G14700.1 28.571 224 135 7 26 236 115 326 7.10e-16 77.4
Msa1027340 AT2G23910.1 26.592 267 170 9 9 263 50 302 3.63e-15 74.7
Msa1027340 AT2G23910.4 26.592 267 170 9 9 263 16 268 3.64e-15 74.3

Find 57 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACTTCTGTATATTAA+AGG 0.167507 7_1:-59680114 None:intergenic
TATTTGATATTCTGGATATT+TGG 0.178162 7_1:-59679766 None:intergenic
GAGAAAGCTGTTCTTGAATT+TGG 0.206019 7_1:+59679108 Msa1027340:CDS
ACTGTTAGTATTTGATATTC+TGG 0.207664 7_1:-59679774 None:intergenic
CTTGAATTTGGTGAACAAAA+TGG 0.220583 7_1:+59679120 Msa1027340:CDS
ACAAAACGACCAACAATAAA+AGG 0.257121 7_1:-59679168 None:intergenic
GATGAGTTGAAGGAAATTAA+AGG 0.307837 7_1:+59679798 Msa1027340:CDS
GGTTCTGCTGTTTCATTCAA+TGG 0.327787 7_1:+59678982 Msa1027340:CDS
AGTTTCTTCGTGTTTAAATC+TGG 0.331608 7_1:-59679831 None:intergenic
CTTAGAAGTGTTAAACCATT+TGG 0.332594 7_1:+59679054 Msa1027340:CDS
TTGAACTTCTGTATATTAAA+GGG 0.339097 7_1:-59680113 None:intergenic
AGAACCGTCGATGGCGCATT+AGG 0.342006 7_1:+59678901 Msa1027340:CDS
TCTACTTGAGAATTCTGTTC+CGG 0.350560 7_1:+59679680 Msa1027340:CDS
TTATGCTGTTTCTAAGACTT+TGG 0.354833 7_1:+59679083 Msa1027340:CDS
TATTGAGAAAGCCCTTGTTT+TGG 0.381480 7_1:+59679212 Msa1027340:CDS
TTGAATTTGGTGAACAAAAT+GGG 0.381597 7_1:+59679121 Msa1027340:CDS
ATTGCTGCAGCAAAACTGTC+TGG 0.389083 7_1:-59678799 None:intergenic
CATTAGCCATCATTGATCTT+AGG 0.400690 7_1:-59680007 None:intergenic
TGACATTAACAGAACGTAAG+AGG 0.420276 7_1:+59678704 None:intergenic
CTACTTGAGAATTCTGTTCC+GGG 0.432102 7_1:+59679681 Msa1027340:CDS
TCACTCACGGCGAAGTCAAT+TGG 0.434477 7_1:-59678856 None:intergenic
AGTTGAGACATCTCTTCAAT+AGG 0.440279 7_1:-59679735 None:intergenic
TCAATAGAATCAGGAAGCTT+AGG 0.441975 7_1:-59679195 None:intergenic
AGGGCTTTCTCAATAGAATC+AGG 0.454202 7_1:-59679204 None:intergenic
ACTAACAGTAGATGAGTTGA+AGG 0.472358 7_1:+59679788 Msa1027340:CDS
ATGTGTTGGATGAGAGTGAT+TGG 0.477053 7_1:+59679016 Msa1027340:CDS
ACAGCATAATTCCAACCAAA+TGG 0.484910 7_1:-59679069 None:intergenic
GAAGTGTTAAACCATTTGGT+TGG 0.489175 7_1:+59679058 Msa1027340:CDS
ATGCACCGGGTAGATTTGTC+AGG 0.495956 7_1:-59678738 None:intergenic
TCTTCAATAGGTACAATGAA+TGG 0.521628 7_1:-59679723 None:intergenic
ATTCAATGTTGCAAGGAGAA+AGG 0.530160 7_1:+59679909 Msa1027340:CDS
ACGAAGAAACTCGTGGATGC+TGG 0.539479 7_1:+59679843 Msa1027340:CDS
TATTTCTTCTGGTTCACTCA+CGG 0.542470 7_1:-59678869 None:intergenic
ACTGTCTGGGTTGCTTAGAT+CGG 0.544855 7_1:-59678785 None:intergenic
CAGCAATCGAAGGATGTGTC+GGG 0.548077 7_1:+59678815 Msa1027340:CDS
AATGTGCCTAAGATCAATGA+TGG 0.549030 7_1:+59680001 Msa1027340:three_prime_UTR
TGGAAAAGACAATGATGTGT+TGG 0.554067 7_1:+59679002 Msa1027340:CDS
TGAAGGAAATTAAAGGTGCA+AGG 0.554380 7_1:+59679805 Msa1027340:CDS
AATGCCTAATGCGCCATCGA+CGG 0.565238 7_1:-59678905 None:intergenic
GACATTAACAGAACGTAAGA+GGG 0.566904 7_1:+59678705 None:intergenic
GCAGCAATCGAAGGATGTGT+CGG 0.579142 7_1:+59678814 Msa1027340:CDS
GAGCAATTGTATCTACCTCC+CGG 0.580073 7_1:-59679699 None:intergenic
TTGCTGCAGCAAAACTGTCT+GGG 0.581343 7_1:-59678798 None:intergenic
AGGTTTATATACACTTCAAG+TGG 0.594598 7_1:+59678961 Msa1027340:CDS
TCATACCTAATACCAAAACA+AGG 0.596808 7_1:-59679224 None:intergenic
GGCGAAGTCAATTGGTGAAG+CGG 0.597111 7_1:-59678848 None:intergenic
TGGTGTGACACGTTTCCACA+TGG 0.600639 7_1:+59679623 Msa1027340:CDS
TGAATTCAAAGACAGTGAAG+AGG 0.602314 7_1:+59678941 Msa1027340:CDS
CGATGCAATTCAATGTTGCA+AGG 0.602642 7_1:+59679902 Msa1027340:CDS
AGTCAATTGGTGAAGCGGTG+TGG 0.629454 7_1:-59678843 None:intergenic
ACATGTTGATGATGTAGCTA+GGG 0.630546 7_1:+59679647 Msa1027340:CDS
AGCTTCCTGACAAATCTACC+CGG 0.636776 7_1:+59678733 Msa1027340:CDS
TACATGTTGATGATGTAGCT+AGG 0.648760 7_1:+59679646 Msa1027340:CDS
TTTAAACACGAAGAAACTCG+TGG 0.659776 7_1:+59679836 Msa1027340:CDS
CATACCTAATACCAAAACAA+GGG 0.680642 7_1:-59679223 None:intergenic
CATCATCAACATGTACCATG+TGG 0.691154 7_1:-59679638 None:intergenic
CTTGAGAATTCTGTTCCGGG+AGG 0.698317 7_1:+59679684 Msa1027340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTGATATTCTGGATATT+TGG - chr7_1:59679769-59679788 None:intergenic 20.0%
!! TTGAACTTCTGTATATTAAA+GGG - chr7_1:59680116-59680135 None:intergenic 20.0%
!! TATTTGATATTCTGGATATT+TGG - chr7_1:59679769-59679788 None:intergenic 20.0%
!! TTGAACTTCTGTATATTAAA+GGG - chr7_1:59680116-59680135 None:intergenic 20.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_1:59679121-59679140 Msa1027340:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_1:59679159-59679178 Msa1027340:CDS 25.0%
!! AAAGAAACATGAGTTGAATA+AGG - chr7_1:59679258-59679277 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_1:59679542-59679561 Msa1027340:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_1:59679777-59679796 None:intergenic 25.0%
! CTTGAACTTCTGTATATTAA+AGG - chr7_1:59680117-59680136 None:intergenic 25.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_1:59679121-59679140 Msa1027340:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_1:59679159-59679178 Msa1027340:CDS 25.0%
!! AAAGAAACATGAGTTGAATA+AGG - chr7_1:59679258-59679277 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_1:59679542-59679561 Msa1027340:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_1:59679777-59679796 None:intergenic 25.0%
! CTTGAACTTCTGTATATTAA+AGG - chr7_1:59680117-59680136 None:intergenic 25.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_1:59678764-59678783 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_1:59678883-59678902 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_1:59678961-59678980 Msa1027340:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_1:59679054-59679073 Msa1027340:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_1:59679083-59679102 Msa1027340:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_1:59679120-59679139 Msa1027340:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_1:59679171-59679190 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_1:59679226-59679245 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_1:59679227-59679246 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG + chr7_1:59679297-59679316 Msa1027340:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG + chr7_1:59679375-59679394 Msa1027340:intron 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_1:59679494-59679513 Msa1027340:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_1:59679726-59679745 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_1:59679798-59679817 Msa1027340:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_1:59679834-59679853 None:intergenic 30.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_1:59678764-59678783 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_1:59678883-59678902 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_1:59678961-59678980 Msa1027340:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_1:59679054-59679073 Msa1027340:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_1:59679083-59679102 Msa1027340:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_1:59679120-59679139 Msa1027340:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_1:59679171-59679190 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_1:59679226-59679245 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_1:59679227-59679246 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG + chr7_1:59679297-59679316 Msa1027340:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG + chr7_1:59679375-59679394 Msa1027340:intron 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_1:59679494-59679513 Msa1027340:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_1:59679726-59679745 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_1:59679798-59679817 Msa1027340:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_1:59679834-59679853 None:intergenic 30.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_1:59678872-59678891 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_1:59678941-59678960 Msa1027340:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_1:59679002-59679021 Msa1027340:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_1:59679058-59679077 Msa1027340:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_1:59679072-59679091 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_1:59679108-59679127 Msa1027340:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_1:59679198-59679217 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_1:59679212-59679231 Msa1027340:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_1:59679219-59679238 Msa1027340:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_1:59679430-59679449 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_1:59679486-59679505 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_1:59679603-59679622 Msa1027340:intron 35.0%
!! TACATGTTGATGATGTAGCT+AGG + chr7_1:59679646-59679665 Msa1027340:CDS 35.0%
!! ACATGTTGATGATGTAGCTA+GGG + chr7_1:59679647-59679666 Msa1027340:CDS 35.0%
TCTACTTGAGAATTCTGTTC+CGG + chr7_1:59679680-59679699 Msa1027340:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_1:59679738-59679757 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_1:59679788-59679807 Msa1027340:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_1:59679805-59679824 Msa1027340:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_1:59679836-59679855 Msa1027340:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_1:59679909-59679928 Msa1027340:CDS 35.0%
AATGTGCCTAAGATCAATGA+TGG + chr7_1:59680001-59680020 Msa1027340:three_prime_UTR 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_1:59680010-59680029 None:intergenic 35.0%
! GAAGTTCAAGTTATTACTCG+TGG + chr7_1:59680127-59680146 Msa1027340:three_prime_UTR 35.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_1:59678872-59678891 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_1:59678941-59678960 Msa1027340:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_1:59679002-59679021 Msa1027340:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_1:59679058-59679077 Msa1027340:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_1:59679072-59679091 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_1:59679108-59679127 Msa1027340:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_1:59679198-59679217 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_1:59679212-59679231 Msa1027340:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_1:59679219-59679238 Msa1027340:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_1:59679430-59679449 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_1:59679486-59679505 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_1:59679603-59679622 Msa1027340:intron 35.0%
!! TACATGTTGATGATGTAGCT+AGG + chr7_1:59679646-59679665 Msa1027340:CDS 35.0%
!! ACATGTTGATGATGTAGCTA+GGG + chr7_1:59679647-59679666 Msa1027340:CDS 35.0%
TCTACTTGAGAATTCTGTTC+CGG + chr7_1:59679680-59679699 Msa1027340:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_1:59679738-59679757 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_1:59679788-59679807 Msa1027340:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_1:59679805-59679824 Msa1027340:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_1:59679836-59679855 Msa1027340:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_1:59679909-59679928 Msa1027340:CDS 35.0%
AATGTGCCTAAGATCAATGA+TGG + chr7_1:59680001-59680020 Msa1027340:three_prime_UTR 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_1:59680010-59680029 None:intergenic 35.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_1:59678982-59679001 Msa1027340:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_1:59679016-59679035 Msa1027340:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_1:59679207-59679226 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG - chr7_1:59679464-59679483 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_1:59679483-59679502 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_1:59679557-59679576 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_1:59679575-59679594 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_1:59679641-59679660 None:intergenic 40.0%
CTACTTGAGAATTCTGTTCC+GGG + chr7_1:59679681-59679700 Msa1027340:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_1:59679902-59679921 Msa1027340:CDS 40.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_1:59678982-59679001 Msa1027340:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_1:59679016-59679035 Msa1027340:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_1:59679207-59679226 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG - chr7_1:59679464-59679483 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_1:59679483-59679502 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_1:59679557-59679576 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_1:59679575-59679594 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_1:59679641-59679660 None:intergenic 40.0%
CTACTTGAGAATTCTGTTCC+GGG + chr7_1:59679681-59679700 Msa1027340:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_1:59679902-59679921 Msa1027340:CDS 40.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_1:59678733-59678752 Msa1027340:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_1:59678755-59678774 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_1:59678788-59678807 None:intergenic 45.0%
TTGCTGCAGCAAAACTGTCT+GGG - chr7_1:59678801-59678820 None:intergenic 45.0%
ATTGCTGCAGCAAAACTGTC+TGG - chr7_1:59678802-59678821 None:intergenic 45.0%
! AGTTTTGCTGCAGCAATCGA+AGG + chr7_1:59678805-59678824 Msa1027340:CDS 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_1:59678892-59678911 Msa1027340:CDS 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr7_1:59679309-59679328 None:intergenic 45.0%
GGCGGTATCATATTCTGACT+TGG - chr7_1:59679465-59679484 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_1:59679585-59679604 Msa1027340:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_1:59679589-59679608 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_1:59679590-59679609 None:intergenic 45.0%
GAGCAATTGTATCTACCTCC+CGG - chr7_1:59679702-59679721 None:intergenic 45.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_1:59678733-59678752 Msa1027340:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_1:59678755-59678774 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_1:59678788-59678807 None:intergenic 45.0%
TTGCTGCAGCAAAACTGTCT+GGG - chr7_1:59678801-59678820 None:intergenic 45.0%
ATTGCTGCAGCAAAACTGTC+TGG - chr7_1:59678802-59678821 None:intergenic 45.0%
! AGTTTTGCTGCAGCAATCGA+AGG + chr7_1:59678805-59678824 Msa1027340:CDS 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_1:59678892-59678911 Msa1027340:CDS 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr7_1:59679309-59679328 None:intergenic 45.0%
GGCGGTATCATATTCTGACT+TGG - chr7_1:59679465-59679484 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_1:59679585-59679604 Msa1027340:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_1:59679589-59679608 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_1:59679590-59679609 None:intergenic 45.0%
GAGCAATTGTATCTACCTCC+CGG - chr7_1:59679702-59679721 None:intergenic 45.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_1:59678741-59678760 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_1:59678754-59678773 None:intergenic 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_1:59678814-59678833 Msa1027340:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_1:59678815-59678834 Msa1027340:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_1:59678846-59678865 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_1:59678851-59678870 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_1:59678859-59678878 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_1:59678908-59678927 None:intergenic 50.0%
TGAAGCACGGATACAGACAC+TGG + chr7_1:59679310-59679329 Msa1027340:intron 50.0%
TACAGACACTGGACACGACA+CGG + chr7_1:59679321-59679340 Msa1027340:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_1:59679419-59679438 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_1:59679623-59679642 Msa1027340:CDS 50.0%
CTTGAGAATTCTGTTCCGGG+AGG + chr7_1:59679684-59679703 Msa1027340:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_1:59679843-59679862 Msa1027340:CDS 50.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_1:59678741-59678760 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_1:59678754-59678773 None:intergenic 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_1:59678814-59678833 Msa1027340:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_1:59678815-59678834 Msa1027340:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_1:59678846-59678865 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_1:59678851-59678870 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_1:59678859-59678878 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_1:59678908-59678927 None:intergenic 50.0%
TGAAGCACGGATACAGACAC+TGG + chr7_1:59679310-59679329 Msa1027340:intron 50.0%
TACAGACACTGGACACGACA+CGG + chr7_1:59679321-59679340 Msa1027340:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_1:59679419-59679438 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_1:59679623-59679642 Msa1027340:CDS 50.0%
CTTGAGAATTCTGTTCCGGG+AGG + chr7_1:59679684-59679703 Msa1027340:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_1:59679843-59679862 Msa1027340:CDS 50.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_1:59678901-59678920 Msa1027340:CDS 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_1:59679418-59679437 None:intergenic 55.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_1:59678901-59678920 Msa1027340:CDS 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_1:59679418-59679437 None:intergenic 55.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_1:59679399-59679418 Msa1027340:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_1:59679413-59679432 None:intergenic 65.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_1:59679399-59679418 Msa1027340:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_1:59679413-59679432 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 59678715 59680148 59678715 ID=Msa1027340;Name=Msa1027340
chr7_1 mRNA 59678715 59680148 59678715 ID=Msa1027340-mRNA-1;Parent=Msa1027340;Name=Msa1027340-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|207|286
chr7_1 exon 59678715 59679240 59678715 ID=Msa1027340-mRNA-1:exon:12141;Parent=Msa1027340-mRNA-1
chr7_1 exon 59679607 59680148 59679607 ID=Msa1027340-mRNA-1:exon:12142;Parent=Msa1027340-mRNA-1
chr7_1 CDS 59678715 59679240 59678715 ID=Msa1027340-mRNA-1:cds;Parent=Msa1027340-mRNA-1
chr7_1 CDS 59679607 59679941 59679607 ID=Msa1027340-mRNA-1:cds;Parent=Msa1027340-mRNA-1
chr7_1 three_prime_UTR 59679942 59680148 59679942 ID=Msa1027340-mRNA-1:three_prime_utr;Parent=Msa1027340-mRNA-1
Gene Sequence

>Msa1027340

GAACGTAAGAGGGATGTTAGCTTCCTGACAAATCTACCCGGTGCATCCGAAAAGCTACATTTCTTCAACGCCGATCTAAGCAACCCAGACAGTTTTGCTGCAGCAATCGAAGGATGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAGTGACAAAAAGAACCGTCGATGGCGCATTAGGCATTTTAAAAGCATGTGTGAATTCAAAGACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAATGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAACCATTTGGTTGGAATTATGCTGTTTCTAAGACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATTGTTGGTCGTTTTGTTTGTCCTAAGCTTCCTGATTCTATTGAGAAAGCCCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGATGATGTAGCTAGGGCACATATATATCTACTTGAGAATTCTGTTCCGGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>Msa1027340

ERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDNDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*