Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204140 | XP_024632340.1 | 96.273 | 161 | 6 | 0 | 1 | 161 | 1 | 161 | 1.44e-110 | 321 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204140 | sp|Q9SX65|DNAT1_ARATH | 62.821 | 156 | 56 | 1 | 6 | 161 | 3 | 156 | 2.65e-67 | 204 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204140 | I3S426 | 96.273 | 161 | 6 | 0 | 1 | 161 | 1 | 161 | 6.87e-111 | 321 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0042520 | Msa0204140 | -0.804809 | 1.807184e-49 | -8.615850e-47 |
| Msa0052780 | Msa0204140 | 0.834066 | 3.716293e-56 | -8.615850e-47 |
| Msa0070120 | Msa0204140 | 0.805284 | 1.437634e-49 | -8.615850e-47 |
| Msa0097570 | Msa0204140 | 0.836489 | 9.080398e-57 | -8.615850e-47 |
| Msa0107830 | Msa0204140 | 0.810254 | 1.262718e-50 | -8.615850e-47 |
| Msa0129770 | Msa0204140 | 0.818861 | 1.571408e-52 | -8.615850e-47 |
| Msa0161230 | Msa0204140 | 0.827351 | 1.641325e-54 | -8.615850e-47 |
| Msa0185040 | Msa0204140 | 0.805461 | 1.320030e-49 | -8.615850e-47 |
| Msa0186240 | Msa0204140 | 0.807241 | 5.564508e-50 | -8.615850e-47 |
| Msa0203090 | Msa0204140 | 0.804427 | 2.171694e-49 | -8.615850e-47 |
| Msa0204140 | Msa0257760 | 0.832201 | 1.082164e-55 | -8.615850e-47 |
| Msa0204140 | Msa0264520 | 0.845091 | 5.041927e-59 | -8.615850e-47 |
| Msa0204140 | Msa0267900 | 0.805485 | 1.304995e-49 | -8.615850e-47 |
| Msa0204140 | Msa0268660 | -0.801796 | 7.603286e-49 | -8.615850e-47 |
| Msa0204140 | Msa0271700 | 0.800446 | 1.435821e-48 | -8.615850e-47 |
| Msa0204140 | Msa0275730 | 0.809217 | 2.110765e-50 | -8.615850e-47 |
| Msa0204140 | Msa0285890 | 0.897235 | 1.711035e-76 | -8.615850e-47 |
| Msa0204140 | Msa0287480 | 0.805511 | 1.288355e-49 | -8.615850e-47 |
| Msa0204140 | Msa0319680 | 0.801537 | 8.591412e-49 | -8.615850e-47 |
| Msa0204140 | Msa0320170 | 0.833609 | 4.834781e-56 | -8.615850e-47 |
| Msa0204140 | Msa0324810 | 0.832118 | 1.134569e-55 | -8.615850e-47 |
| Msa0204140 | Msa0345050 | 0.802655 | 5.061347e-49 | -8.615850e-47 |
| Msa0204140 | Msa0345890 | 0.839240 | 1.784106e-57 | -8.615850e-47 |
| Msa0204140 | Msa0345980 | 0.805577 | 1.248095e-49 | -8.615850e-47 |
| Msa0204140 | Msa0378320 | 0.822560 | 2.219033e-53 | -8.615850e-47 |
| Msa0204140 | Msa0390200 | 0.815521 | 8.857416e-52 | -8.615850e-47 |
| Msa0204140 | Msa0393100 | 0.815333 | 9.755627e-52 | -8.615850e-47 |
| Msa0204140 | Msa0402800 | 0.820316 | 7.314012e-53 | -8.615850e-47 |
| Msa0204140 | Msa0405200 | 0.806632 | 7.486929e-50 | -8.615850e-47 |
| Msa0204140 | Msa0405210 | 0.804424 | 2.174238e-49 | -8.615850e-47 |
| Msa0204140 | Msa0415100 | 0.802572 | 5.263746e-49 | -8.615850e-47 |
| Msa0204140 | Msa0415640 | 0.808037 | 3.770761e-50 | -8.615850e-47 |
| Msa0204140 | Msa0427660 | 0.811827 | 5.761188e-51 | -8.615850e-47 |
| Msa0204140 | Msa0434300 | 0.814513 | 1.482685e-51 | -8.615850e-47 |
| Msa0204140 | Msa0434400 | 0.802191 | 6.305912e-49 | -8.615850e-47 |
| Msa0204140 | Msa0441260 | 0.809546 | 1.793379e-50 | -8.615850e-47 |
| Msa0204140 | Msa0449490 | 0.807162 | 5.782321e-50 | -8.615850e-47 |
| Msa0204140 | Msa0449500 | 0.813127 | 2.995662e-51 | -8.615850e-47 |
| Msa0204140 | Msa0460600 | 0.820918 | 5.320397e-53 | -8.615850e-47 |
| Msa0204140 | Msa0480540 | 0.808086 | 3.681262e-50 | -8.615850e-47 |
| Msa0204140 | Msa0488580 | 0.823284 | 1.504824e-53 | -8.615850e-47 |
| Msa0204140 | Msa0490320 | 0.822748 | 2.006829e-53 | -8.615850e-47 |
| Msa0204140 | Msa0493870 | 0.836734 | 7.868038e-57 | -8.615850e-47 |
| Msa0204140 | Msa0497680 | 0.822139 | 2.779292e-53 | -8.615850e-47 |
| Msa0204140 | Msa0497690 | 0.809309 | 2.017156e-50 | -8.615850e-47 |
| Msa0204140 | Msa0497860 | 0.839683 | 1.368703e-57 | -8.615850e-47 |
| Msa0204140 | Msa0510870 | 0.832185 | 1.092176e-55 | -8.615850e-47 |
| Msa0204140 | Msa0522140 | 0.818020 | 2.437465e-52 | -8.615850e-47 |
| Msa0204140 | Msa0522170 | 0.814535 | 1.466430e-51 | -8.615850e-47 |
| Msa0204140 | Msa0531050 | 0.819472 | 1.140850e-52 | -8.615850e-47 |
| Msa0204140 | Msa0534610 | 0.830588 | 2.698771e-55 | -8.615850e-47 |
| Msa0204140 | Msa0541030 | 0.808837 | 2.544971e-50 | -8.615850e-47 |
| Msa0204140 | Msa0556270 | 0.820980 | 5.148708e-53 | -8.615850e-47 |
| Msa0204140 | Msa0557240 | 0.837551 | 4.861564e-57 | -8.615850e-47 |
| Msa0204140 | Msa0563860 | 0.809616 | 1.732829e-50 | -8.615850e-47 |
| Msa0204140 | Msa0565180 | 0.838309 | 3.104747e-57 | -8.615850e-47 |
| Msa0204140 | Msa0566530 | 0.819147 | 1.352816e-52 | -8.615850e-47 |
| Msa0204140 | Msa0567480 | 0.808403 | 3.150547e-50 | -8.615850e-47 |
| Msa0204140 | Msa0577490 | 0.802957 | 4.383607e-49 | -8.615850e-47 |
| Msa0204140 | Msa0588040 | 0.823642 | 1.241025e-53 | -8.615850e-47 |
| Msa0204140 | Msa0590810 | 0.843876 | 1.070107e-58 | -8.615850e-47 |
| Msa0204140 | Msa0597180 | 0.834537 | 2.830751e-56 | -8.615850e-47 |
| Msa0204140 | Msa0611060 | 0.828348 | 9.453376e-55 | -8.615850e-47 |
| Msa0204140 | Msa0628200 | 0.804074 | 2.572472e-49 | -8.615850e-47 |
| Msa0204140 | Msa0631130 | 0.838693 | 2.470497e-57 | -8.615850e-47 |
| Msa0204140 | Msa0637590 | 0.800189 | 1.619985e-48 | -8.615850e-47 |
| Msa0204140 | Msa0644330 | 0.834724 | 2.540753e-56 | -8.615850e-47 |
| Msa0204140 | Msa0644340 | 0.805515 | 1.285999e-49 | -8.615850e-47 |
| Msa0204140 | Msa0650560 | 0.809196 | 2.132635e-50 | -8.615850e-47 |
| Msa0204140 | Msa0657340 | 0.822990 | 1.762475e-53 | -8.615850e-47 |
| Msa0204140 | Msa0669350 | 0.821803 | 3.325601e-53 | -8.615850e-47 |
| Msa0204140 | Msa0701430 | 0.825507 | 4.513312e-54 | -8.615850e-47 |
| Msa0204140 | Msa0723770 | 0.803160 | 3.980013e-49 | -8.615850e-47 |
| Msa0204140 | Msa0731690 | 0.814036 | 1.890426e-51 | -8.615850e-47 |
| Msa0204140 | Msa0744640 | 0.850472 | 1.661517e-60 | -8.615850e-47 |
| Msa0204140 | Msa0744710 | 0.805077 | 1.588412e-49 | -8.615850e-47 |
| Msa0204140 | Msa0810330 | 0.804996 | 1.652046e-49 | -8.615850e-47 |
| Msa0204140 | Msa0816630 | 0.800748 | 1.245991e-48 | -8.615850e-47 |
| Msa0204140 | Msa0826240 | 0.806748 | 7.076394e-50 | -8.615850e-47 |
| Msa0204140 | Msa0833270 | 0.807596 | 4.679091e-50 | -8.615850e-47 |
| Msa0204140 | Msa0841730 | 0.850782 | 1.358720e-60 | -8.615850e-47 |
| Msa0204140 | Msa0843950 | 0.803077 | 4.141408e-49 | -8.615850e-47 |
| Msa0204140 | Msa0850640 | 0.802768 | 4.795492e-49 | -8.615850e-47 |
| Msa0204140 | Msa0859040 | 0.813086 | 3.058133e-51 | -8.615850e-47 |
| Msa0204140 | Msa0863940 | 0.807827 | 4.179038e-50 | -8.615850e-47 |
| Msa0204140 | Msa0870510 | 0.816167 | 6.356868e-52 | -8.615850e-47 |
| Msa0204140 | Msa0873910 | 0.808254 | 3.389568e-50 | -8.615850e-47 |
| Msa0204140 | Msa0901270 | 0.828956 | 6.737795e-55 | -8.615850e-47 |
| Msa0204140 | Msa0901290 | 0.802400 | 5.711970e-49 | -8.615850e-47 |
| Msa0204140 | Msa0905570 | 0.842471 | 2.533743e-58 | -8.615850e-47 |
| Msa0204140 | Msa0966580 | 0.838058 | 3.603374e-57 | -8.615850e-47 |
| Msa0204140 | Msa0966590 | 0.824663 | 7.142889e-54 | -8.615850e-47 |
| Msa0204140 | Msa1001120 | 0.827813 | 1.271226e-54 | -8.615850e-47 |
| Msa0204140 | Msa1015360 | 0.816321 | 5.874484e-52 | -8.615850e-47 |
| Msa0204140 | Msa1021300 | 0.827743 | 1.321538e-54 | -8.615850e-47 |
| Msa0204140 | Msa1030210 | 0.827465 | 1.541005e-54 | -8.615850e-47 |
| Msa0204140 | Msa1035050 | 0.827411 | 1.588289e-54 | -8.615850e-47 |
| Msa0204140 | Msa1069250 | 0.824001 | 1.022198e-53 | -8.615850e-47 |
| Msa0204140 | Msa1069340 | 0.834016 | 3.824261e-56 | -8.615850e-47 |
| Msa0204140 | Msa1075090 | 0.833063 | 6.612659e-56 | -8.615850e-47 |
| Msa0204140 | Msa1077970 | 0.806385 | 8.438489e-50 | -8.615850e-47 |
| Msa0204140 | Msa1086490 | -0.802349 | 5.852939e-49 | -8.615850e-47 |
| Msa0204140 | Msa1086670 | -0.801379 | 9.259398e-49 | -8.615850e-47 |
| Msa0204140 | Msa1092310 | 0.807008 | 6.233881e-50 | -8.615850e-47 |
| Msa0204140 | Msa1107220 | 0.812216 | 4.740464e-51 | -8.615850e-47 |
| Msa0204140 | Msa1111860 | 0.810028 | 1.412929e-50 | -8.615850e-47 |
| Msa0204140 | Msa1114670 | 0.819536 | 1.103153e-52 | -8.615850e-47 |
| Msa0204140 | Msa1115980 | 0.831835 | 1.332402e-55 | -8.615850e-47 |
| Msa0204140 | Msa1120580 | 0.817119 | 3.890350e-52 | -8.615850e-47 |
| Msa0204140 | Msa1131120 | 0.800090 | 1.696735e-48 | -8.615850e-47 |
| Msa0204140 | Msa1133700 | 0.813185 | 2.908707e-51 | -8.615850e-47 |
| Msa0204140 | Msa1136760 | 0.814493 | 1.498337e-51 | -8.615850e-47 |
| Msa0204140 | Msa1150760 | 0.812484 | 4.142045e-51 | -8.615850e-47 |
| Msa0204140 | Msa1157110 | 0.839115 | 1.921292e-57 | -8.615850e-47 |
| Msa0204140 | Msa1157670 | 0.819667 | 1.029629e-52 | -8.615850e-47 |
| Msa0204140 | Msa1159170 | 0.819682 | 1.021788e-52 | -8.615850e-47 |
| Msa0204140 | Msa1162430 | 0.824531 | 7.674807e-54 | -8.615850e-47 |
| Msa0204140 | Msa1167310 | 0.805906 | 1.064435e-49 | -8.615850e-47 |
| Msa0204140 | Msa1173150 | 0.832514 | 9.052721e-56 | -8.615850e-47 |
| Msa0204140 | Msa1185270 | 0.813577 | 2.385317e-51 | -8.615850e-47 |
| Msa0204140 | Msa1187490 | 0.825739 | 3.977939e-54 | -8.615850e-47 |
| Msa0204140 | Msa1202110 | 0.830779 | 2.422636e-55 | -8.615850e-47 |
| Msa0204140 | Msa1202800 | 0.822834 | 1.916415e-53 | -8.615850e-47 |
| Msa0204140 | Msa1203810 | 0.802468 | 5.529515e-49 | -8.615850e-47 |
| Msa0204140 | Msa1211610 | 0.830776 | 2.427929e-55 | -8.615850e-47 |
| Msa0204140 | Msa1239210 | 0.817566 | 3.085023e-52 | -8.615850e-47 |
| Msa0204140 | Msa1254870 | 0.829059 | 6.361815e-55 | -8.615850e-47 |
| Msa0204140 | Msa1255210 | 0.815614 | 8.445059e-52 | -8.615850e-47 |
| Msa0204140 | Msa1257920 | 0.835943 | 1.250251e-56 | -8.615850e-47 |
| Msa0204140 | Msa1262540 | 0.833761 | 4.428468e-56 | -8.615850e-47 |
| Msa0204140 | Msa1269200 | 0.833487 | 5.184933e-56 | -8.615850e-47 |
| Msa0204140 | Msa1295650 | 0.812002 | 5.276962e-51 | -8.615850e-47 |
| Msa0204140 | Msa1296240 | 0.805440 | 1.333898e-49 | -8.615850e-47 |
| Msa0204140 | Msa1299480 | 0.829355 | 5.392066e-55 | -8.615850e-47 |
| Msa0204140 | Msa1328430 | 0.830073 | 3.606460e-55 | -8.615850e-47 |
| Msa0204140 | Msa1357570 | 0.805949 | 1.042600e-49 | -8.615850e-47 |
| Msa0204140 | Msa1367790 | 0.803464 | 3.443217e-49 | -8.615850e-47 |
| Msa0204140 | Msa1395110 | 0.808771 | 2.629653e-50 | -8.615850e-47 |
| Msa0204140 | Msa1395250 | 0.808567 | 2.907147e-50 | -8.615850e-47 |
| Msa0204140 | Msa1404050 | 0.800306 | 1.533075e-48 | -8.615850e-47 |
| Msa0204140 | Msa1405530 | 0.922558 | 8.414202e-89 | -8.615850e-47 |
| Msa0204140 | Msa1415410 | 0.801028 | 1.092346e-48 | -8.615850e-47 |
| Msa0204140 | Msa1439930 | 0.802603 | 5.188279e-49 | -8.615850e-47 |
| Msa0204140 | Msa1455200 | 0.816803 | 4.580504e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204140 | MtrunA17_Chr2g0302161 | 92.547 | 161 | 6 | 1 | 1 | 161 | 1 | 155 | 1.55e-107 | 303 |
| Msa0204140 | MtrunA17_Chr2g0302101 | 75.155 | 161 | 40 | 0 | 1 | 161 | 1 | 161 | 6.04e-91 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0204140 | AT1G48320.1 | 62.821 | 156 | 56 | 1 | 6 | 161 | 3 | 156 | 2.70e-68 | 204 |
| Msa0204140 | AT5G48950.1 | 54.667 | 150 | 65 | 2 | 11 | 157 | 3 | 152 | 9.82e-57 | 175 |
| Msa0204140 | AT5G48950.2 | 60.185 | 108 | 41 | 1 | 11 | 116 | 3 | 110 | 1.08e-42 | 138 |
Find 25 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATGGTCCTCCATGATAATT+TGG | 0.172360 | 2_1:-28983023 | None:intergenic |
| GATTTACCCCTTCATACATT+TGG | 0.265244 | 2_1:+28983081 | Msa0204140:CDS |
| GTGTCATCACACAAAGTTTC+TGG | 0.275018 | 2_1:+28983120 | Msa0204140:CDS |
| AGCATTCACCTGAATGGTTT+TGG | 0.290561 | 2_1:-28983666 | None:intergenic |
| AAAACCAAAAGCTGCTGATT+TGG | 0.309085 | 2_1:+28983059 | Msa0204140:CDS |
| CCTCCATGAAGCACACTAAA+AGG | 0.309265 | 2_1:-28983488 | None:intergenic |
| AAGTGTTGCCAAAACCATTC+AGG | 0.313827 | 2_1:+28983658 | Msa0204140:CDS |
| AAATCCAAATCAGCAGCTTT+TGG | 0.333199 | 2_1:-28983063 | None:intergenic |
| ATTTACCCCTTCATACATTT+GGG | 0.334094 | 2_1:+28983082 | Msa0204140:CDS |
| TGCATACTTCTTTAGCATAT+TGG | 0.339467 | 2_1:-28984328 | None:intergenic |
| ATGGTCCTCCATGATAATTT+GGG | 0.345074 | 2_1:-28983022 | None:intergenic |
| TGTGGGTATAAAAGAGTTGC+TGG | 0.445165 | 2_1:+28983563 | Msa0204140:CDS |
| AAGAGGAGCATTCACCTGAA+TGG | 0.482948 | 2_1:-28983672 | None:intergenic |
| GCTGAAGCTCTTGCAAGTAT+TGG | 0.487992 | 2_1:+28983527 | Msa0204140:CDS |
| ATAGAAACCCCAAATTATCA+TGG | 0.493931 | 2_1:+28983014 | None:intergenic |
| AGGTGTGGGATGTGAAAATC+TGG | 0.507075 | 2_1:+28984205 | Msa0204140:intron |
| ACTCAAACCCAAATGTATGA+AGG | 0.525757 | 2_1:-28983089 | None:intergenic |
| TTGGAGCACATGTTGCTTGT+GGG | 0.528993 | 2_1:+28983546 | Msa0204140:CDS |
| CTCAAACCCAAATGTATGAA+GGG | 0.530132 | 2_1:-28983088 | None:intergenic |
| CATTTGAAATCAGCAATGCT+TGG | 0.536764 | 2_1:+28983605 | Msa0204140:CDS |
| AGTCACTGAAAAGTGTTGCC+AGG | 0.553880 | 2_1:+28983152 | Msa0204140:CDS |
| GGAGGACCATCAATCATCAT+CGG | 0.605735 | 2_1:+28983035 | Msa0204140:CDS |
| ATTGGAGCACATGTTGCTTG+TGG | 0.616187 | 2_1:+28983545 | Msa0204140:CDS |
| TCAAACCCAAATGTATGAAG+GGG | 0.634737 | 2_1:-28983087 | None:intergenic |
| GAAACCCCAAATTATCATGG+AGG | 0.700985 | 2_1:+28983017 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAGAGAATTTATATAAA+TGG | - | chr2_1:28983825-28983844 | None:intergenic | 10.0% |
| !! | ATTTATATAAATTCTCTTAT+TGG | + | chr2_1:28983824-28983843 | Msa0204140:intron | 10.0% |
| !! | AATAAGAGAATTTATATAAA+TGG | - | chr2_1:28983825-28983844 | None:intergenic | 10.0% |
| !! | ATTTATATAAATTCTCTTAT+TGG | + | chr2_1:28983824-28983843 | Msa0204140:intron | 10.0% |
| !!! | ATATCATCTCATATTTATTT+TGG | + | chr2_1:28983915-28983934 | Msa0204140:intron | 15.0% |
| !!! | ATATCATCTCATATTTATTT+TGG | + | chr2_1:28983915-28983934 | Msa0204140:intron | 15.0% |
| !! | ATATATGAACAAGAAAAAGT+AGG | + | chr2_1:28983432-28983451 | Msa0204140:intron | 20.0% |
| !!! | ACTTTGAGAAAAATATAAAG+AGG | - | chr2_1:28983692-28983711 | None:intergenic | 20.0% |
| !! | CGAATTCTGATTTAAATAAT+TGG | - | chr2_1:28983719-28983738 | None:intergenic | 20.0% |
| !!! | TGTTTTACTTACTTTATAGT+CGG | - | chr2_1:28983971-28983990 | None:intergenic | 20.0% |
| !! | ACTATAAAGTAAGTAAAACA+AGG | + | chr2_1:28983971-28983990 | Msa0204140:intron | 20.0% |
| !! | AAAAATTTCAACACAACATT+CGG | - | chr2_1:28984112-28984131 | None:intergenic | 20.0% |
| !!! | TTTTACTTGCTTACATTTTT+TGG | + | chr2_1:28984128-28984147 | Msa0204140:intron | 20.0% |
| !!! | TTTACTTGCTTACATTTTTT+GGG | + | chr2_1:28984129-28984148 | Msa0204140:intron | 20.0% |
| !!! | AGTTTTTGAATAACAAATCA+AGG | + | chr2_1:28984395-28984414 | Msa0204140:three_prime_UTR | 20.0% |
| !! | ATATATGAACAAGAAAAAGT+AGG | + | chr2_1:28983432-28983451 | Msa0204140:intron | 20.0% |
| !!! | ACTTTGAGAAAAATATAAAG+AGG | - | chr2_1:28983692-28983711 | None:intergenic | 20.0% |
| !! | CGAATTCTGATTTAAATAAT+TGG | - | chr2_1:28983719-28983738 | None:intergenic | 20.0% |
| !!! | TGTTTTACTTACTTTATAGT+CGG | - | chr2_1:28983971-28983990 | None:intergenic | 20.0% |
| !! | ACTATAAAGTAAGTAAAACA+AGG | + | chr2_1:28983971-28983990 | Msa0204140:intron | 20.0% |
| !! | AAAAATTTCAACACAACATT+CGG | - | chr2_1:28984112-28984131 | None:intergenic | 20.0% |
| !!! | TTTTACTTGCTTACATTTTT+TGG | + | chr2_1:28984128-28984147 | Msa0204140:intron | 20.0% |
| !!! | TTTACTTGCTTACATTTTTT+GGG | + | chr2_1:28984129-28984148 | Msa0204140:intron | 20.0% |
| !!! | AGTTTTTGAATAACAAATCA+AGG | + | chr2_1:28984395-28984414 | Msa0204140:three_prime_UTR | 20.0% |
| ! | CAAAAAACTATGCAAACAAA+GGG | - | chr2_1:28983188-28983207 | None:intergenic | 25.0% |
| ! | ACAAAAAACTATGCAAACAA+AGG | - | chr2_1:28983189-28983208 | None:intergenic | 25.0% |
| !! | GTATACATGCTTAATTTTTC+AGG | - | chr2_1:28983246-28983265 | None:intergenic | 25.0% |
| ! | ACAAGAAAAAGTAGGTAATT+AGG | + | chr2_1:28983440-28983459 | Msa0204140:intron | 25.0% |
| !!! | AATTAGGAGTGATTTGATTT+TGG | + | chr2_1:28983456-28983475 | Msa0204140:intron | 25.0% |
| ! | CACATAAAGATAAATCGTTT+GGG | - | chr2_1:28983754-28983773 | None:intergenic | 25.0% |
| ! | TCACATAAAGATAAATCGTT+TGG | - | chr2_1:28983755-28983774 | None:intergenic | 25.0% |
| ! | TTGAAGACAATATCACTAAT+TGG | + | chr2_1:28983790-28983809 | Msa0204140:intron | 25.0% |
| !! | AAATTCTCTTATTGGTGATT+TGG | + | chr2_1:28983832-28983851 | Msa0204140:intron | 25.0% |
| !!! | CTCATATTTATTTTGGTACT+TGG | + | chr2_1:28983922-28983941 | Msa0204140:intron | 25.0% |
| ! | ATCATGATTGGTATAATCAT+TGG | - | chr2_1:28983997-28984016 | None:intergenic | 25.0% |
| !!! | TTACTTGCTTACATTTTTTG+GGG | + | chr2_1:28984130-28984149 | Msa0204140:intron | 25.0% |
| ! | CAAAAAACTATGCAAACAAA+GGG | - | chr2_1:28983188-28983207 | None:intergenic | 25.0% |
| ! | ACAAAAAACTATGCAAACAA+AGG | - | chr2_1:28983189-28983208 | None:intergenic | 25.0% |
| !! | GTATACATGCTTAATTTTTC+AGG | - | chr2_1:28983246-28983265 | None:intergenic | 25.0% |
| ! | ACAAGAAAAAGTAGGTAATT+AGG | + | chr2_1:28983440-28983459 | Msa0204140:intron | 25.0% |
| !!! | AATTAGGAGTGATTTGATTT+TGG | + | chr2_1:28983456-28983475 | Msa0204140:intron | 25.0% |
| ! | CACATAAAGATAAATCGTTT+GGG | - | chr2_1:28983754-28983773 | None:intergenic | 25.0% |
| ! | TCACATAAAGATAAATCGTT+TGG | - | chr2_1:28983755-28983774 | None:intergenic | 25.0% |
| ! | TTGAAGACAATATCACTAAT+TGG | + | chr2_1:28983790-28983809 | Msa0204140:intron | 25.0% |
| !! | AAATTCTCTTATTGGTGATT+TGG | + | chr2_1:28983832-28983851 | Msa0204140:intron | 25.0% |
| !!! | CTCATATTTATTTTGGTACT+TGG | + | chr2_1:28983922-28983941 | Msa0204140:intron | 25.0% |
| ! | ATCATGATTGGTATAATCAT+TGG | - | chr2_1:28983997-28984016 | None:intergenic | 25.0% |
| !!! | TTACTTGCTTACATTTTTTG+GGG | + | chr2_1:28984130-28984149 | Msa0204140:intron | 25.0% |
| ATTTACCCCTTCATACATTT+GGG | + | chr2_1:28983082-28983101 | Msa0204140:CDS | 30.0% | |
| AATTAAGCATGTATACTCCT+TGG | + | chr2_1:28983250-28983269 | Msa0204140:intron | 30.0% | |
| GATATATGTTAATATCGCGT+TGG | - | chr2_1:28983317-28983336 | None:intergenic | 30.0% | |
| ACAATATCACTAATTGGCTA+TGG | + | chr2_1:28983796-28983815 | Msa0204140:intron | 30.0% | |
| !!! | GATCTGTTTTTTGAGTTTGA+AGG | - | chr2_1:28984240-28984259 | None:intergenic | 30.0% |
| TGCATACTTCTTTAGCATAT+TGG | - | chr2_1:28984331-28984350 | None:intergenic | 30.0% | |
| ATTTACCCCTTCATACATTT+GGG | + | chr2_1:28983082-28983101 | Msa0204140:CDS | 30.0% | |
| AATTAAGCATGTATACTCCT+TGG | + | chr2_1:28983250-28983269 | Msa0204140:intron | 30.0% | |
| GATATATGTTAATATCGCGT+TGG | - | chr2_1:28983317-28983336 | None:intergenic | 30.0% | |
| ACAATATCACTAATTGGCTA+TGG | + | chr2_1:28983796-28983815 | Msa0204140:intron | 30.0% | |
| !!! | GATCTGTTTTTTGAGTTTGA+AGG | - | chr2_1:28984240-28984259 | None:intergenic | 30.0% |
| TGCATACTTCTTTAGCATAT+TGG | - | chr2_1:28984331-28984350 | None:intergenic | 30.0% | |
| ! | AAAACCAAAAGCTGCTGATT+TGG | + | chr2_1:28983059-28983078 | Msa0204140:CDS | 35.0% |
| ! | AAATCCAAATCAGCAGCTTT+TGG | - | chr2_1:28983066-28983085 | None:intergenic | 35.0% |
| GATTTACCCCTTCATACATT+TGG | + | chr2_1:28983081-28983100 | Msa0204140:CDS | 35.0% | |
| TCAAACCCAAATGTATGAAG+GGG | - | chr2_1:28983090-28983109 | None:intergenic | 35.0% | |
| CTCAAACCCAAATGTATGAA+GGG | - | chr2_1:28983091-28983110 | None:intergenic | 35.0% | |
| ACTCAAACCCAAATGTATGA+AGG | - | chr2_1:28983092-28983111 | None:intergenic | 35.0% | |
| ! | ACTTTTCAGTGACTTGAAGA+TGG | - | chr2_1:28983146-28983165 | None:intergenic | 35.0% |
| TATAACGAACACTGACAACA+CGG | - | chr2_1:28983398-28983417 | None:intergenic | 35.0% | |
| ! | CATTTGAAATCAGCAATGCT+TGG | + | chr2_1:28983605-28983624 | Msa0204140:CDS | 35.0% |
| !!! | TGGTTTTGGCAACACTTAAA+GGG | - | chr2_1:28983655-28983674 | None:intergenic | 35.0% |
| !!! | ATGGTTTTGGCAACACTTAA+AGG | - | chr2_1:28983656-28983675 | None:intergenic | 35.0% |
| !!! | TATTTTGGTACTTGGTTCCA+AGG | + | chr2_1:28983930-28983949 | Msa0204140:intron | 35.0% |
| !! | ATTTTGGTACTTGGTTCCAA+GGG | + | chr2_1:28983931-28983950 | Msa0204140:intron | 35.0% |
| !!! | TTGCTTACATTTTTTGGGGT+TGG | + | chr2_1:28984134-28984153 | Msa0204140:intron | 35.0% |
| !!! | TTTTTGGGGTTGGATTTGTT+TGG | + | chr2_1:28984144-28984163 | Msa0204140:intron | 35.0% |
| !!! | TTTTGGGGTTGGATTTGTTT+GGG | + | chr2_1:28984145-28984164 | Msa0204140:intron | 35.0% |
| TTACACTTTGATCCTATTGC+AGG | + | chr2_1:28984185-28984204 | Msa0204140:intron | 35.0% | |
| !! | TCTTTTGCATAATCTGGAAC+AGG | - | chr2_1:28984303-28984322 | None:intergenic | 35.0% |
| ! | AAAACCAAAAGCTGCTGATT+TGG | + | chr2_1:28983059-28983078 | Msa0204140:CDS | 35.0% |
| ! | AAATCCAAATCAGCAGCTTT+TGG | - | chr2_1:28983066-28983085 | None:intergenic | 35.0% |
| GATTTACCCCTTCATACATT+TGG | + | chr2_1:28983081-28983100 | Msa0204140:CDS | 35.0% | |
| TCAAACCCAAATGTATGAAG+GGG | - | chr2_1:28983090-28983109 | None:intergenic | 35.0% | |
| CTCAAACCCAAATGTATGAA+GGG | - | chr2_1:28983091-28983110 | None:intergenic | 35.0% | |
| ACTCAAACCCAAATGTATGA+AGG | - | chr2_1:28983092-28983111 | None:intergenic | 35.0% | |
| ! | ACTTTTCAGTGACTTGAAGA+TGG | - | chr2_1:28983146-28983165 | None:intergenic | 35.0% |
| TATAACGAACACTGACAACA+CGG | - | chr2_1:28983398-28983417 | None:intergenic | 35.0% | |
| ! | CATTTGAAATCAGCAATGCT+TGG | + | chr2_1:28983605-28983624 | Msa0204140:CDS | 35.0% |
| !!! | TGGTTTTGGCAACACTTAAA+GGG | - | chr2_1:28983655-28983674 | None:intergenic | 35.0% |
| !!! | ATGGTTTTGGCAACACTTAA+AGG | - | chr2_1:28983656-28983675 | None:intergenic | 35.0% |
| !!! | TATTTTGGTACTTGGTTCCA+AGG | + | chr2_1:28983930-28983949 | Msa0204140:intron | 35.0% |
| !! | ATTTTGGTACTTGGTTCCAA+GGG | + | chr2_1:28983931-28983950 | Msa0204140:intron | 35.0% |
| !!! | TTGCTTACATTTTTTGGGGT+TGG | + | chr2_1:28984134-28984153 | Msa0204140:intron | 35.0% |
| !!! | TTTTTGGGGTTGGATTTGTT+TGG | + | chr2_1:28984144-28984163 | Msa0204140:intron | 35.0% |
| !!! | TTTTGGGGTTGGATTTGTTT+GGG | + | chr2_1:28984145-28984164 | Msa0204140:intron | 35.0% |
| TTACACTTTGATCCTATTGC+AGG | + | chr2_1:28984185-28984204 | Msa0204140:intron | 35.0% | |
| !! | TCTTTTGCATAATCTGGAAC+AGG | - | chr2_1:28984303-28984322 | None:intergenic | 35.0% |
| ! | GTTTTGCCGATGATGATTGA+TGG | - | chr2_1:28983044-28983063 | None:intergenic | 40.0% |
| GTGTCATCACACAAAGTTTC+TGG | + | chr2_1:28983120-28983139 | Msa0204140:CDS | 40.0% | |
| GCATGTATACTCCTTGGATT+AGG | + | chr2_1:28983256-28983275 | Msa0204140:intron | 40.0% | |
| ! | TGTTAATATCGCGTTGGTGT+CGG | - | chr2_1:28983311-28983330 | None:intergenic | 40.0% |
| ! | CTTTTAGTGTGCTTCATGGA+GGG | + | chr2_1:28983489-28983508 | Msa0204140:CDS | 40.0% |
| ! | TTTTAGTGTGCTTCATGGAG+GGG | + | chr2_1:28983490-28983509 | Msa0204140:CDS | 40.0% |
| TGTGGGTATAAAAGAGTTGC+TGG | + | chr2_1:28983563-28983582 | Msa0204140:CDS | 40.0% | |
| !! | GGTTTTGGCAACACTTAAAG+GGG | - | chr2_1:28983654-28983673 | None:intergenic | 40.0% |
| ! | AAGTGTTGCCAAAACCATTC+AGG | + | chr2_1:28983658-28983677 | Msa0204140:CDS | 40.0% |
| ! | AGCATTCACCTGAATGGTTT+TGG | - | chr2_1:28983669-28983688 | None:intergenic | 40.0% |
| TTTGATCCTATTGCAGGTGT+GGG | + | chr2_1:28984191-28984210 | Msa0204140:intron | 40.0% | |
| ! | GCAGCTTCTTTTGCATAATC+TGG | - | chr2_1:28984309-28984328 | None:intergenic | 40.0% |
| GATGGTCCTCCATGATAATT+TGG | - | chr2_1:28983026-28983045 | None:intergenic | 40.0% | |
| ! | GTTTTGCCGATGATGATTGA+TGG | - | chr2_1:28983044-28983063 | None:intergenic | 40.0% |
| GTGTCATCACACAAAGTTTC+TGG | + | chr2_1:28983120-28983139 | Msa0204140:CDS | 40.0% | |
| GCATGTATACTCCTTGGATT+AGG | + | chr2_1:28983256-28983275 | Msa0204140:intron | 40.0% | |
| ! | TGTTAATATCGCGTTGGTGT+CGG | - | chr2_1:28983311-28983330 | None:intergenic | 40.0% |
| ! | CTTTTAGTGTGCTTCATGGA+GGG | + | chr2_1:28983489-28983508 | Msa0204140:CDS | 40.0% |
| ! | TTTTAGTGTGCTTCATGGAG+GGG | + | chr2_1:28983490-28983509 | Msa0204140:CDS | 40.0% |
| TGTGGGTATAAAAGAGTTGC+TGG | + | chr2_1:28983563-28983582 | Msa0204140:CDS | 40.0% | |
| !! | GGTTTTGGCAACACTTAAAG+GGG | - | chr2_1:28983654-28983673 | None:intergenic | 40.0% |
| ! | AAGTGTTGCCAAAACCATTC+AGG | + | chr2_1:28983658-28983677 | Msa0204140:CDS | 40.0% |
| ! | AGCATTCACCTGAATGGTTT+TGG | - | chr2_1:28983669-28983688 | None:intergenic | 40.0% |
| TTTGATCCTATTGCAGGTGT+GGG | + | chr2_1:28984191-28984210 | Msa0204140:intron | 40.0% | |
| ! | GCAGCTTCTTTTGCATAATC+TGG | - | chr2_1:28984309-28984328 | None:intergenic | 40.0% |
| GGAGGACCATCAATCATCAT+CGG | + | chr2_1:28983035-28983054 | Msa0204140:CDS | 45.0% | |
| !! | AGTCACTGAAAAGTGTTGCC+AGG | + | chr2_1:28983152-28983171 | Msa0204140:CDS | 45.0% |
| ACAGGATCATGCCTAATCCA+AGG | - | chr2_1:28983270-28983289 | None:intergenic | 45.0% | |
| ! | CAGCCTTTTAGTGTGCTTCA+TGG | + | chr2_1:28983485-28983504 | Msa0204140:intron | 45.0% |
| CCTCCATGAAGCACACTAAA+AGG | - | chr2_1:28983491-28983510 | None:intergenic | 45.0% | |
| ! | CCTTTTAGTGTGCTTCATGG+AGG | + | chr2_1:28983488-28983507 | Msa0204140:CDS | 45.0% |
| GCTGAAGCTCTTGCAAGTAT+TGG | + | chr2_1:28983527-28983546 | Msa0204140:CDS | 45.0% | |
| ! | ATTGGAGCACATGTTGCTTG+TGG | + | chr2_1:28983545-28983564 | Msa0204140:CDS | 45.0% |
| ! | TTGGAGCACATGTTGCTTGT+GGG | + | chr2_1:28983546-28983565 | Msa0204140:CDS | 45.0% |
| !! | AAGAGGAGCATTCACCTGAA+TGG | - | chr2_1:28983675-28983694 | None:intergenic | 45.0% |
| AGCTGAGCTCGAATCATGAT+TGG | - | chr2_1:28984009-28984028 | None:intergenic | 45.0% | |
| CTTTGATCCTATTGCAGGTG+TGG | + | chr2_1:28984190-28984209 | Msa0204140:intron | 45.0% | |
| AGGTGTGGGATGTGAAAATC+TGG | + | chr2_1:28984205-28984224 | Msa0204140:intron | 45.0% | |
| GGAGGACCATCAATCATCAT+CGG | + | chr2_1:28983035-28983054 | Msa0204140:CDS | 45.0% | |
| !! | AGTCACTGAAAAGTGTTGCC+AGG | + | chr2_1:28983152-28983171 | Msa0204140:CDS | 45.0% |
| ACAGGATCATGCCTAATCCA+AGG | - | chr2_1:28983270-28983289 | None:intergenic | 45.0% | |
| ! | CAGCCTTTTAGTGTGCTTCA+TGG | + | chr2_1:28983485-28983504 | Msa0204140:intron | 45.0% |
| CCTCCATGAAGCACACTAAA+AGG | - | chr2_1:28983491-28983510 | None:intergenic | 45.0% | |
| ! | CCTTTTAGTGTGCTTCATGG+AGG | + | chr2_1:28983488-28983507 | Msa0204140:CDS | 45.0% |
| GCTGAAGCTCTTGCAAGTAT+TGG | + | chr2_1:28983527-28983546 | Msa0204140:CDS | 45.0% | |
| ! | ATTGGAGCACATGTTGCTTG+TGG | + | chr2_1:28983545-28983564 | Msa0204140:CDS | 45.0% |
| ! | TTGGAGCACATGTTGCTTGT+GGG | + | chr2_1:28983546-28983565 | Msa0204140:CDS | 45.0% |
| !! | AAGAGGAGCATTCACCTGAA+TGG | - | chr2_1:28983675-28983694 | None:intergenic | 45.0% |
| AGCTGAGCTCGAATCATGAT+TGG | - | chr2_1:28984009-28984028 | None:intergenic | 45.0% | |
| CTTTGATCCTATTGCAGGTG+TGG | + | chr2_1:28984190-28984209 | Msa0204140:intron | 45.0% | |
| AGGTGTGGGATGTGAAAATC+TGG | + | chr2_1:28984205-28984224 | Msa0204140:intron | 45.0% | |
| !! | CTGAAAAGTGTTGCCAGGTC+AGG | + | chr2_1:28983157-28983176 | Msa0204140:intron | 50.0% |
| ACAAAGGGTTTGACCTGACC+TGG | - | chr2_1:28983173-28983192 | None:intergenic | 50.0% | |
| GATTAGGCATGATCCTGTGC+AGG | + | chr2_1:28983272-28983291 | Msa0204140:intron | 50.0% | |
| ACACGTTGCATATCCTGCAC+AGG | - | chr2_1:28983288-28983307 | None:intergenic | 50.0% | |
| TGGTACTTGGTTCCAAGGGA+AGG | + | chr2_1:28983935-28983954 | Msa0204140:intron | 50.0% | |
| TCACATCCCACACCTGCAAT+AGG | - | chr2_1:28984200-28984219 | None:intergenic | 50.0% | |
| !! | CTGAAAAGTGTTGCCAGGTC+AGG | + | chr2_1:28983157-28983176 | Msa0204140:intron | 50.0% |
| ACAAAGGGTTTGACCTGACC+TGG | - | chr2_1:28983173-28983192 | None:intergenic | 50.0% | |
| GATTAGGCATGATCCTGTGC+AGG | + | chr2_1:28983272-28983291 | Msa0204140:intron | 50.0% | |
| ACACGTTGCATATCCTGCAC+AGG | - | chr2_1:28983288-28983307 | None:intergenic | 50.0% | |
| TGGTACTTGGTTCCAAGGGA+AGG | + | chr2_1:28983935-28983954 | Msa0204140:intron | 50.0% | |
| TCACATCCCACACCTGCAAT+AGG | - | chr2_1:28984200-28984219 | None:intergenic | 50.0% | |
| GGACATCGAGCTCCTTCCCT+TGG | - | chr2_1:28983950-28983969 | None:intergenic | 60.0% | |
| GGACATCGAGCTCCTTCCCT+TGG | - | chr2_1:28983950-28983969 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 28983025 | 28984510 | 28983025 | ID=Msa0204140;Name=Msa0204140 |
| chr2_1 | mRNA | 28983025 | 28984510 | 28983025 | ID=Msa0204140-mRNA-1;Parent=Msa0204140;Name=Msa0204140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=8|1|1|1|1|1|3|151|161 |
| chr2_1 | exon | 28983025 | 28983173 | 28983025 | ID=Msa0204140-mRNA-1:exon:10395;Parent=Msa0204140-mRNA-1 |
| chr2_1 | exon | 28983488 | 28983679 | 28983488 | ID=Msa0204140-mRNA-1:exon:10396;Parent=Msa0204140-mRNA-1 |
| chr2_1 | exon | 28984207 | 28984510 | 28984207 | ID=Msa0204140-mRNA-1:exon:10397;Parent=Msa0204140-mRNA-1 |
| chr2_1 | five_prime_UTR | 28983025 | 28983032 | 28983025 | ID=Msa0204140-mRNA-1:five_prime_utr;Parent=Msa0204140-mRNA-1 |
| chr2_1 | CDS | 28983033 | 28983173 | 28983033 | ID=Msa0204140-mRNA-1:cds;Parent=Msa0204140-mRNA-1 |
| chr2_1 | CDS | 28983488 | 28983679 | 28983488 | ID=Msa0204140-mRNA-1:cds;Parent=Msa0204140-mRNA-1 |
| chr2_1 | CDS | 28984207 | 28984359 | 28984207 | ID=Msa0204140-mRNA-1:cds;Parent=Msa0204140-mRNA-1 |
| chr2_1 | three_prime_UTR | 28984360 | 28984510 | 28984360 | ID=Msa0204140-mRNA-1:three_prime_utr;Parent=Msa0204140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
