AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1154570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154570 MtrunA17_Chr7g0245631 99.301 286 2 0 1 286 41 326 0.0 582
Msa1154570 MtrunA17_Chr7g0245741 68.531 286 90 0 1 286 41 326 1.93e-148 419
Msa1154570 MtrunA17_Chr7g0245691 65.625 288 96 1 2 286 43 330 7.87e-143 404
Msa1154570 MtrunA17_Chr7g0245711 66.084 286 97 0 1 286 3 288 1.98e-142 402
Msa1154570 MtrunA17_Chr7g0245731 66.084 286 97 0 1 286 91 376 1.39e-140 400
Msa1154570 MtrunA17_Chr7g0245671 65.278 288 97 1 2 286 42 329 1.99e-140 398
Msa1154570 MtrunA17_Chr7g0245641 65.157 287 98 1 2 286 80 366 5.26e-140 399
Msa1154570 MtrunA17_Chr4g0010991 48.958 288 145 2 1 286 42 329 1.80e-90 271
Msa1154570 MtrunA17_Chr1g0155411 42.215 289 155 3 4 286 43 325 3.52e-78 240
Msa1154570 MtrunA17_Chr1g0155431 42.466 292 156 3 1 286 40 325 1.96e-77 238
Msa1154570 MtrunA17_Chr4g0048961 36.101 277 165 3 18 284 62 336 3.56e-59 192
Msa1154570 MtrunA17_Chr4g0042101 32.660 297 177 5 9 286 61 353 1.66e-53 177
Msa1154570 MtrunA17_Chr2g0331211 37.113 291 168 7 2 286 38 319 3.96e-50 168
Msa1154570 MtrunA17_Chr8g0364051 34.138 290 173 6 4 286 43 321 3.43e-43 150
Msa1154570 MtrunA17_Chr8g0363831 34.629 283 171 6 6 283 46 319 4.58e-42 147
Msa1154570 MtrunA17_Chr5g0423551 32.394 284 184 5 6 286 41 319 1.98e-41 145
Msa1154570 MtrunA17_Chr4g0039321 36.752 234 141 3 6 236 46 275 4.61e-41 144
Msa1154570 MtrunA17_Chr2g0281991 32.558 301 178 8 6 286 45 340 1.21e-39 141
Msa1154570 MtrunA17_Chr3g0077231 35.169 236 146 3 4 236 41 272 1.82e-39 140
Msa1154570 MtrunA17_Chr3g0077221 35.593 236 145 4 4 236 45 276 6.58e-38 136
Msa1154570 MtrunA17_Chr5g0431311 33.449 287 182 6 3 286 39 319 8.28e-37 133
Msa1154570 MtrunA17_Chr3g0106111 31.142 289 190 6 1 286 37 319 1.40e-36 132
Msa1154570 MtrunA17_Chr4g0039311 34.188 234 147 3 6 236 48 277 6.70e-36 131
Msa1154570 MtrunA17_Chr2g0282001 29.333 300 185 6 6 284 44 337 2.27e-34 127
Msa1154570 MtrunA17_Chr7g0275521 31.333 300 184 9 6 286 44 340 1.39e-32 122
Msa1154570 MtrunA17_Chr2g0282011 31.104 299 181 8 6 284 45 338 5.64e-31 118
Msa1154570 MtrunA17_Chr4g0002661 31.206 282 180 10 9 286 52 323 1.11e-30 117
Msa1154570 MtrunA17_Chr2g0291541 31.944 288 183 9 5 286 46 326 3.40e-30 115
Msa1154570 MtrunA17_Chr2g0333781 32.624 282 175 11 9 286 59 329 1.09e-29 114
Msa1154570 MtrunA17_Chr4g0001321 30.249 281 183 9 9 286 56 326 2.40e-28 111
Msa1154570 MtrunA17_Chr4g0002961 31.119 286 175 9 9 286 52 323 9.23e-26 103
Msa1154570 MtrunA17_Chr5g0411071 26.818 220 142 5 16 230 55 260 5.63e-16 76.6
Msa1154570 MtrunA17_Chr6g0450211 25.514 243 155 6 6 228 79 315 2.78e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1154570 AT2G45400.3 47.931 290 144 4 3 286 19 307 8.61e-89 267
Msa1154570 AT2G45400.1 47.931 290 144 4 3 286 76 364 7.30e-88 266
Msa1154570 AT5G42800.1 42.907 289 153 4 4 286 43 325 2.45e-76 238
Msa1154570 AT2G45400.2 48.361 244 120 3 3 240 76 319 7.46e-74 229
Msa1154570 AT1G61720.1 36.913 298 171 7 1 286 45 337 3.20e-62 200
Msa1154570 AT4G35420.1 40.278 288 160 7 3 286 42 321 5.68e-58 189
Msa1154570 AT2G45400.4 50.279 179 84 2 3 176 76 254 1.27e-53 175
Msa1154570 AT2G02400.1 34.266 286 177 7 5 286 40 318 2.58e-43 150
Msa1154570 AT4G27250.2 30.403 273 177 4 16 277 57 327 4.05e-41 145
Msa1154570 AT1G09510.1 35.915 284 173 5 3 283 42 319 2.25e-40 143
Msa1154570 AT1G09480.2 35.192 287 177 6 3 286 42 322 3.30e-40 142
Msa1154570 AT1G09480.1 35.192 287 177 6 3 286 89 369 8.48e-40 142
Msa1154570 AT4G27250.1 29.537 281 179 4 16 277 57 337 1.09e-39 142
Msa1154570 AT1G66800.1 33.569 283 181 6 4 286 43 318 1.43e-39 140
Msa1154570 AT1G51410.1 32.639 288 181 6 4 286 44 323 1.76e-39 140
Msa1154570 AT5G19440.1 33.449 287 178 5 4 285 45 323 2.20e-39 140
Msa1154570 AT1G25460.1 32.281 285 184 5 6 286 40 319 1.07e-38 138
Msa1154570 AT5G58490.1 33.448 290 182 7 1 286 41 323 2.19e-38 137
Msa1154570 AT1G09490.2 33.910 289 182 6 1 286 9 291 2.20e-38 137
Msa1154570 AT1G68540.1 31.818 286 185 6 6 286 41 321 9.54e-38 136
Msa1154570 AT1G09490.1 33.798 287 181 6 3 286 42 322 2.34e-37 135
Msa1154570 AT1G09500.2 34.583 240 149 5 1 236 6 241 1.17e-32 122
Msa1154570 AT1G09500.3 34.034 238 149 4 3 236 42 275 4.64e-32 120
Msa1154570 AT1G09500.1 34.034 238 149 4 3 236 42 275 1.06e-31 120
Msa1154570 AT1G15950.3 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1154570 AT1G15950.1 32.270 282 180 7 7 286 50 322 1.49e-30 117
Msa1154570 AT2G33590.1 33.571 280 165 10 7 278 46 312 7.18e-30 115
Msa1154570 AT1G76470.1 31.365 271 181 4 9 277 46 313 2.31e-29 114
Msa1154570 AT1G80820.1 32.056 287 174 11 7 286 45 317 4.03e-29 113
Msa1154570 AT1G15950.2 32.222 270 173 6 7 274 50 311 1.08e-28 112
Msa1154570 AT2G33600.1 38.559 236 129 7 7 234 46 273 6.82e-28 110
Msa1154570 AT1G68540.2 31.507 219 141 5 72 286 1 214 9.73e-26 101
Msa1154570 AT1G15950.6 33.761 234 145 6 7 238 50 275 2.95e-25 102
Msa1154570 AT1G15950.4 33.761 234 145 6 7 238 50 275 3.81e-25 102
Msa1154570 AT1G15950.5 33.761 234 145 6 7 238 50 275 4.21e-25 101
Msa1154570 AT1G80820.2 33.054 239 140 9 7 238 45 270 3.67e-24 99.0
Msa1154570 AT1G15950.7 30.357 224 149 5 65 286 6 224 4.24e-17 79.3
Msa1154570 AT5G14700.1 28.571 224 135 7 26 236 115 326 7.10e-16 77.4
Msa1154570 AT2G23910.1 26.592 267 170 9 9 263 50 302 3.63e-15 74.7
Msa1154570 AT2G23910.4 26.592 267 170 9 9 263 16 268 3.64e-15 74.3

Find 57 sgRNAs with CRISPR-Local

Find 173 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGAACTTCTGTATATTAA+AGG 0.167507 7_4:-42077149 None:intergenic
TATTTGATATTCTGGATATT+TGG 0.178162 7_4:-42076801 None:intergenic
GAGAAAGCTGTTCTTGAATT+TGG 0.206019 7_4:+42076143 Msa1154570:CDS
ACTGTTAGTATTTGATATTC+TGG 0.207664 7_4:-42076809 None:intergenic
CTTGAATTTGGTGAACAAAA+TGG 0.220583 7_4:+42076155 Msa1154570:CDS
ACAAAACGACCAACAATAAA+AGG 0.257121 7_4:-42076203 None:intergenic
GATGAGTTGAAGGAAATTAA+AGG 0.307837 7_4:+42076833 Msa1154570:CDS
GGTTCTGCTGTTTCATTCAA+TGG 0.327787 7_4:+42076017 Msa1154570:CDS
AGTTTCTTCGTGTTTAAATC+TGG 0.331608 7_4:-42076866 None:intergenic
CTTAGAAGTGTTAAACCATT+TGG 0.332594 7_4:+42076089 Msa1154570:CDS
TTGAACTTCTGTATATTAAA+GGG 0.339097 7_4:-42077148 None:intergenic
AGAACCGTCGATGGCGCATT+AGG 0.342006 7_4:+42075936 Msa1154570:CDS
TCTACTTGAGAATTCTGTTC+CGG 0.350560 7_4:+42076715 Msa1154570:CDS
TTATGCTGTTTCTAAGACTT+TGG 0.354833 7_4:+42076118 Msa1154570:CDS
TATTGAGAAAGCCCTTGTTT+TGG 0.381480 7_4:+42076247 Msa1154570:CDS
TTGAATTTGGTGAACAAAAT+GGG 0.381597 7_4:+42076156 Msa1154570:CDS
ATTGCTGCAGCAAAACTGTC+TGG 0.389083 7_4:-42075834 None:intergenic
CATTAGCCATCATTGATCTT+AGG 0.400690 7_4:-42077042 None:intergenic
TGACATTAACAGAACGTAAG+AGG 0.420276 7_4:+42075739 None:intergenic
CTACTTGAGAATTCTGTTCC+GGG 0.432102 7_4:+42076716 Msa1154570:CDS
TCACTCACGGCGAAGTCAAT+TGG 0.434477 7_4:-42075891 None:intergenic
AGTTGAGACATCTCTTCAAT+AGG 0.440279 7_4:-42076770 None:intergenic
TCAATAGAATCAGGAAGCTT+AGG 0.441975 7_4:-42076230 None:intergenic
AGGGCTTTCTCAATAGAATC+AGG 0.454202 7_4:-42076239 None:intergenic
ACTAACAGTAGATGAGTTGA+AGG 0.472358 7_4:+42076823 Msa1154570:CDS
ATGTGTTGGATGAGAGTGAT+TGG 0.477053 7_4:+42076051 Msa1154570:CDS
ACAGCATAATTCCAACCAAA+TGG 0.484910 7_4:-42076104 None:intergenic
GAAGTGTTAAACCATTTGGT+TGG 0.489175 7_4:+42076093 Msa1154570:CDS
ATGCACCGGGTAGATTTGTC+AGG 0.495956 7_4:-42075773 None:intergenic
TCTTCAATAGGTACAATGAA+TGG 0.521628 7_4:-42076758 None:intergenic
ATTCAATGTTGCAAGGAGAA+AGG 0.530160 7_4:+42076944 Msa1154570:CDS
ACGAAGAAACTCGTGGATGC+TGG 0.539479 7_4:+42076878 Msa1154570:CDS
TATTTCTTCTGGTTCACTCA+CGG 0.542470 7_4:-42075904 None:intergenic
ACTGTCTGGGTTGCTTAGAT+CGG 0.544855 7_4:-42075820 None:intergenic
CAGCAATCGAAGGATGTGTC+GGG 0.548077 7_4:+42075850 Msa1154570:CDS
AATGTGCCTAAGATCAATGA+TGG 0.549030 7_4:+42077036 Msa1154570:three_prime_UTR
TGGAAAAGACAATGATGTGT+TGG 0.554067 7_4:+42076037 Msa1154570:CDS
TGAAGGAAATTAAAGGTGCA+AGG 0.554380 7_4:+42076840 Msa1154570:CDS
AATGCCTAATGCGCCATCGA+CGG 0.565238 7_4:-42075940 None:intergenic
GACATTAACAGAACGTAAGA+GGG 0.566904 7_4:+42075740 None:intergenic
GCAGCAATCGAAGGATGTGT+CGG 0.579142 7_4:+42075849 Msa1154570:CDS
GAGCAATTGTATCTACCTCC+CGG 0.580073 7_4:-42076734 None:intergenic
TTGCTGCAGCAAAACTGTCT+GGG 0.581343 7_4:-42075833 None:intergenic
AGGTTTATATACACTTCAAG+TGG 0.594598 7_4:+42075996 Msa1154570:CDS
TCATACCTAATACCAAAACA+AGG 0.596808 7_4:-42076259 None:intergenic
GGCGAAGTCAATTGGTGAAG+CGG 0.597111 7_4:-42075883 None:intergenic
TGGTGTGACACGTTTCCACA+TGG 0.600639 7_4:+42076658 Msa1154570:CDS
TGAATTCAAAGACAGTGAAG+AGG 0.602314 7_4:+42075976 Msa1154570:CDS
CGATGCAATTCAATGTTGCA+AGG 0.602642 7_4:+42076937 Msa1154570:CDS
AGTCAATTGGTGAAGCGGTG+TGG 0.629454 7_4:-42075878 None:intergenic
ACATGTTGATGATGTAGCTA+GGG 0.630546 7_4:+42076682 Msa1154570:CDS
AGCTTCCTGACAAATCTACC+CGG 0.636776 7_4:+42075768 Msa1154570:CDS
TACATGTTGATGATGTAGCT+AGG 0.648760 7_4:+42076681 Msa1154570:CDS
TTTAAACACGAAGAAACTCG+TGG 0.659776 7_4:+42076871 Msa1154570:CDS
CATACCTAATACCAAAACAA+GGG 0.680642 7_4:-42076258 None:intergenic
CATCATCAACATGTACCATG+TGG 0.691154 7_4:-42076673 None:intergenic
CTTGAGAATTCTGTTCCGGG+AGG 0.698317 7_4:+42076719 Msa1154570:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTTGATATTCTGGATATT+TGG - chr7_4:42076804-42076823 None:intergenic 20.0%
!! TTGAACTTCTGTATATTAAA+GGG - chr7_4:42077151-42077170 None:intergenic 20.0%
!! TATTTGATATTCTGGATATT+TGG - chr7_4:42076804-42076823 None:intergenic 20.0%
!! TTGAACTTCTGTATATTAAA+GGG - chr7_4:42077151-42077170 None:intergenic 20.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_4:42076156-42076175 Msa1154570:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_4:42076194-42076213 Msa1154570:CDS 25.0%
!! AAAGAAACATGAGTTGAATA+AGG - chr7_4:42076293-42076312 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_4:42076577-42076596 Msa1154570:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_4:42076812-42076831 None:intergenic 25.0%
! CTTGAACTTCTGTATATTAA+AGG - chr7_4:42077152-42077171 None:intergenic 25.0%
!! TTGAATTTGGTGAACAAAAT+GGG + chr7_4:42076156-42076175 Msa1154570:CDS 25.0%
!! TTGATTCTTCCTTTTATTGT+TGG + chr7_4:42076194-42076213 Msa1154570:CDS 25.0%
!! AAAGAAACATGAGTTGAATA+AGG - chr7_4:42076293-42076312 None:intergenic 25.0%
!! GTCAATTTAAAACCTAAACT+CGG + chr7_4:42076577-42076596 Msa1154570:intron 25.0%
! ACTGTTAGTATTTGATATTC+TGG - chr7_4:42076812-42076831 None:intergenic 25.0%
! CTTGAACTTCTGTATATTAA+AGG - chr7_4:42077152-42077171 None:intergenic 25.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_4:42075799-42075818 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_4:42075918-42075937 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_4:42075996-42076015 Msa1154570:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_4:42076089-42076108 Msa1154570:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_4:42076118-42076137 Msa1154570:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_4:42076155-42076174 Msa1154570:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_4:42076206-42076225 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_4:42076261-42076280 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_4:42076262-42076281 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG + chr7_4:42076332-42076351 Msa1154570:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG + chr7_4:42076410-42076429 Msa1154570:intron 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_4:42076529-42076548 Msa1154570:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_4:42076761-42076780 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_4:42076833-42076852 Msa1154570:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_4:42076869-42076888 None:intergenic 30.0%
! GTTGAAGAAATGTAGCTTTT+CGG - chr7_4:42075799-42075818 None:intergenic 30.0%
!! CTTTTTGTCACTATTTCTTC+TGG - chr7_4:42075918-42075937 None:intergenic 30.0%
AGGTTTATATACACTTCAAG+TGG + chr7_4:42075996-42076015 Msa1154570:CDS 30.0%
!! CTTAGAAGTGTTAAACCATT+TGG + chr7_4:42076089-42076108 Msa1154570:CDS 30.0%
!! TTATGCTGTTTCTAAGACTT+TGG + chr7_4:42076118-42076137 Msa1154570:CDS 30.0%
! CTTGAATTTGGTGAACAAAA+TGG + chr7_4:42076155-42076174 Msa1154570:CDS 30.0%
ACAAAACGACCAACAATAAA+AGG - chr7_4:42076206-42076225 None:intergenic 30.0%
CATACCTAATACCAAAACAA+GGG - chr7_4:42076261-42076280 None:intergenic 30.0%
TCATACCTAATACCAAAACA+AGG - chr7_4:42076262-42076281 None:intergenic 30.0%
AAATTATGACCTATGAAGCA+CGG + chr7_4:42076332-42076351 Msa1154570:intron 30.0%
TTCAGTGTAATTACATGTGT+CGG + chr7_4:42076410-42076429 Msa1154570:intron 30.0%
! ATGAGATCGTTGATAAAGAT+TGG + chr7_4:42076529-42076548 Msa1154570:intron 30.0%
TCTTCAATAGGTACAATGAA+TGG - chr7_4:42076761-42076780 None:intergenic 30.0%
! GATGAGTTGAAGGAAATTAA+AGG + chr7_4:42076833-42076852 Msa1154570:CDS 30.0%
AGTTTCTTCGTGTTTAAATC+TGG - chr7_4:42076869-42076888 None:intergenic 30.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_4:42075907-42075926 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_4:42075976-42075995 Msa1154570:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_4:42076037-42076056 Msa1154570:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_4:42076093-42076112 Msa1154570:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_4:42076107-42076126 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_4:42076143-42076162 Msa1154570:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_4:42076233-42076252 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_4:42076247-42076266 Msa1154570:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_4:42076254-42076273 Msa1154570:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_4:42076465-42076484 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_4:42076521-42076540 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_4:42076638-42076657 Msa1154570:intron 35.0%
!! TACATGTTGATGATGTAGCT+AGG + chr7_4:42076681-42076700 Msa1154570:CDS 35.0%
!! ACATGTTGATGATGTAGCTA+GGG + chr7_4:42076682-42076701 Msa1154570:CDS 35.0%
TCTACTTGAGAATTCTGTTC+CGG + chr7_4:42076715-42076734 Msa1154570:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_4:42076773-42076792 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_4:42076823-42076842 Msa1154570:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_4:42076840-42076859 Msa1154570:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_4:42076871-42076890 Msa1154570:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_4:42076944-42076963 Msa1154570:CDS 35.0%
AATGTGCCTAAGATCAATGA+TGG + chr7_4:42077036-42077055 Msa1154570:three_prime_UTR 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_4:42077045-42077064 None:intergenic 35.0%
! GAAGTTCAAGTTATTACTCG+TGG + chr7_4:42077162-42077181 Msa1154570:three_prime_UTR 35.0%
!! TATTTCTTCTGGTTCACTCA+CGG - chr7_4:42075907-42075926 None:intergenic 35.0%
TGAATTCAAAGACAGTGAAG+AGG + chr7_4:42075976-42075995 Msa1154570:CDS 35.0%
TGGAAAAGACAATGATGTGT+TGG + chr7_4:42076037-42076056 Msa1154570:CDS 35.0%
! GAAGTGTTAAACCATTTGGT+TGG + chr7_4:42076093-42076112 Msa1154570:CDS 35.0%
ACAGCATAATTCCAACCAAA+TGG - chr7_4:42076107-42076126 None:intergenic 35.0%
GAGAAAGCTGTTCTTGAATT+TGG + chr7_4:42076143-42076162 Msa1154570:CDS 35.0%
TCAATAGAATCAGGAAGCTT+AGG - chr7_4:42076233-42076252 None:intergenic 35.0%
!! TATTGAGAAAGCCCTTGTTT+TGG + chr7_4:42076247-42076266 Msa1154570:CDS 35.0%
!!! AAAGCCCTTGTTTTGGTATT+AGG + chr7_4:42076254-42076273 Msa1154570:CDS 35.0%
CAGTCATAATCTATGAAGCA+CGG - chr7_4:42076465-42076484 None:intergenic 35.0%
CAACGATCTCATGATTGAAA+TGG - chr7_4:42076521-42076540 None:intergenic 35.0%
GCAGGCAAAAAAGAACAAAT+TGG + chr7_4:42076638-42076657 Msa1154570:intron 35.0%
!! TACATGTTGATGATGTAGCT+AGG + chr7_4:42076681-42076700 Msa1154570:CDS 35.0%
!! ACATGTTGATGATGTAGCTA+GGG + chr7_4:42076682-42076701 Msa1154570:CDS 35.0%
TCTACTTGAGAATTCTGTTC+CGG + chr7_4:42076715-42076734 Msa1154570:CDS 35.0%
AGTTGAGACATCTCTTCAAT+AGG - chr7_4:42076773-42076792 None:intergenic 35.0%
! ACTAACAGTAGATGAGTTGA+AGG + chr7_4:42076823-42076842 Msa1154570:CDS 35.0%
! TGAAGGAAATTAAAGGTGCA+AGG + chr7_4:42076840-42076859 Msa1154570:CDS 35.0%
TTTAAACACGAAGAAACTCG+TGG + chr7_4:42076871-42076890 Msa1154570:CDS 35.0%
ATTCAATGTTGCAAGGAGAA+AGG + chr7_4:42076944-42076963 Msa1154570:CDS 35.0%
AATGTGCCTAAGATCAATGA+TGG + chr7_4:42077036-42077055 Msa1154570:three_prime_UTR 35.0%
CATTAGCCATCATTGATCTT+AGG - chr7_4:42077045-42077064 None:intergenic 35.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_4:42076017-42076036 Msa1154570:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_4:42076051-42076070 Msa1154570:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_4:42076242-42076261 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG - chr7_4:42076499-42076518 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_4:42076518-42076537 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_4:42076592-42076611 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_4:42076610-42076629 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_4:42076676-42076695 None:intergenic 40.0%
CTACTTGAGAATTCTGTTCC+GGG + chr7_4:42076716-42076735 Msa1154570:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_4:42076937-42076956 Msa1154570:CDS 40.0%
!! GGTTCTGCTGTTTCATTCAA+TGG + chr7_4:42076017-42076036 Msa1154570:CDS 40.0%
ATGTGTTGGATGAGAGTGAT+TGG + chr7_4:42076051-42076070 Msa1154570:CDS 40.0%
AGGGCTTTCTCAATAGAATC+AGG - chr7_4:42076242-42076261 None:intergenic 40.0%
GCGGTATCATATTCTGACTT+GGG - chr7_4:42076499-42076518 None:intergenic 40.0%
CGATCTCATGATTGAAATGG+CGG - chr7_4:42076518-42076537 None:intergenic 40.0%
AACGGTCATATACCGAGTTT+AGG - chr7_4:42076592-42076611 None:intergenic 40.0%
GTCAATGGGTAAAGATCGAA+CGG - chr7_4:42076610-42076629 None:intergenic 40.0%
CATCATCAACATGTACCATG+TGG - chr7_4:42076676-42076695 None:intergenic 40.0%
CTACTTGAGAATTCTGTTCC+GGG + chr7_4:42076716-42076735 Msa1154570:CDS 40.0%
CGATGCAATTCAATGTTGCA+AGG + chr7_4:42076937-42076956 Msa1154570:CDS 40.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_4:42075768-42075787 Msa1154570:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_4:42075790-42075809 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_4:42075823-42075842 None:intergenic 45.0%
TTGCTGCAGCAAAACTGTCT+GGG - chr7_4:42075836-42075855 None:intergenic 45.0%
ATTGCTGCAGCAAAACTGTC+TGG - chr7_4:42075837-42075856 None:intergenic 45.0%
! AGTTTTGCTGCAGCAATCGA+AGG + chr7_4:42075840-42075859 Msa1154570:CDS 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_4:42075927-42075946 Msa1154570:CDS 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr7_4:42076344-42076363 None:intergenic 45.0%
GGCGGTATCATATTCTGACT+TGG - chr7_4:42076500-42076519 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_4:42076620-42076639 Msa1154570:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_4:42076624-42076643 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_4:42076625-42076644 None:intergenic 45.0%
GAGCAATTGTATCTACCTCC+CGG - chr7_4:42076737-42076756 None:intergenic 45.0%
AGCTTCCTGACAAATCTACC+CGG + chr7_4:42075768-42075787 Msa1154570:CDS 45.0%
! ATGTAGCTTTTCGGATGCAC+CGG - chr7_4:42075790-42075809 None:intergenic 45.0%
ACTGTCTGGGTTGCTTAGAT+CGG - chr7_4:42075823-42075842 None:intergenic 45.0%
TTGCTGCAGCAAAACTGTCT+GGG - chr7_4:42075836-42075855 None:intergenic 45.0%
ATTGCTGCAGCAAAACTGTC+TGG - chr7_4:42075837-42075856 None:intergenic 45.0%
! AGTTTTGCTGCAGCAATCGA+AGG + chr7_4:42075840-42075859 Msa1154570:CDS 45.0%
GTGACAAAAAGAACCGTCGA+TGG + chr7_4:42075927-42075946 Msa1154570:CDS 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - chr7_4:42076344-42076363 None:intergenic 45.0%
GGCGGTATCATATTCTGACT+TGG - chr7_4:42076500-42076519 None:intergenic 45.0%
!! ACCCATTGACTTTGATGTGC+AGG + chr7_4:42076620-42076639 Msa1154570:intron 45.0%
GCCTGCACATCAAAGTCAAT+GGG - chr7_4:42076624-42076643 None:intergenic 45.0%
TGCCTGCACATCAAAGTCAA+TGG - chr7_4:42076625-42076644 None:intergenic 45.0%
GAGCAATTGTATCTACCTCC+CGG - chr7_4:42076737-42076756 None:intergenic 45.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_4:42075776-42075795 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_4:42075789-42075808 None:intergenic 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_4:42075849-42075868 Msa1154570:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_4:42075850-42075869 Msa1154570:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_4:42075881-42075900 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_4:42075886-42075905 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_4:42075894-42075913 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_4:42075943-42075962 None:intergenic 50.0%
TGAAGCACGGATACAGACAC+TGG + chr7_4:42076345-42076364 Msa1154570:intron 50.0%
TACAGACACTGGACACGACA+CGG + chr7_4:42076356-42076375 Msa1154570:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_4:42076454-42076473 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_4:42076658-42076677 Msa1154570:CDS 50.0%
CTTGAGAATTCTGTTCCGGG+AGG + chr7_4:42076719-42076738 Msa1154570:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_4:42076878-42076897 Msa1154570:CDS 50.0%
ATGCACCGGGTAGATTTGTC+AGG - chr7_4:42075776-42075795 None:intergenic 50.0%
! TGTAGCTTTTCGGATGCACC+GGG - chr7_4:42075789-42075808 None:intergenic 50.0%
GCAGCAATCGAAGGATGTGT+CGG + chr7_4:42075849-42075868 Msa1154570:CDS 50.0%
CAGCAATCGAAGGATGTGTC+GGG + chr7_4:42075850-42075869 Msa1154570:CDS 50.0%
AGTCAATTGGTGAAGCGGTG+TGG - chr7_4:42075881-42075900 None:intergenic 50.0%
GGCGAAGTCAATTGGTGAAG+CGG - chr7_4:42075886-42075905 None:intergenic 50.0%
TCACTCACGGCGAAGTCAAT+TGG - chr7_4:42075894-42075913 None:intergenic 50.0%
AATGCCTAATGCGCCATCGA+CGG - chr7_4:42075943-42075962 None:intergenic 50.0%
TGAAGCACGGATACAGACAC+TGG + chr7_4:42076345-42076364 Msa1154570:intron 50.0%
TACAGACACTGGACACGACA+CGG + chr7_4:42076356-42076375 Msa1154570:intron 50.0%
TATGAAGCACGGACACTCCT+CGG - chr7_4:42076454-42076473 None:intergenic 50.0%
TGGTGTGACACGTTTCCACA+TGG + chr7_4:42076658-42076677 Msa1154570:CDS 50.0%
CTTGAGAATTCTGTTCCGGG+AGG + chr7_4:42076719-42076738 Msa1154570:CDS 50.0%
ACGAAGAAACTCGTGGATGC+TGG + chr7_4:42076878-42076897 Msa1154570:CDS 50.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_4:42075936-42075955 Msa1154570:CDS 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_4:42076453-42076472 None:intergenic 55.0%
AGAACCGTCGATGGCGCATT+AGG + chr7_4:42075936-42075955 Msa1154570:CDS 55.0%
ATGAAGCACGGACACTCCTC+GGG - chr7_4:42076453-42076472 None:intergenic 55.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_4:42076434-42076453 Msa1154570:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_4:42076448-42076467 None:intergenic 65.0%
GTCGTGTCACGCCTAACCCG+AGG + chr7_4:42076434-42076453 Msa1154570:intron 65.0%
GCACGGACACTCCTCGGGTT+AGG - chr7_4:42076448-42076467 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 42075750 42077183 42075750 ID=Msa1154570;Name=Msa1154570
chr7_4 mRNA 42075750 42077183 42075750 ID=Msa1154570-mRNA-1;Parent=Msa1154570;Name=Msa1154570-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|1|0.5|1|1|1|2|207|286
chr7_4 exon 42075750 42076275 42075750 ID=Msa1154570-mRNA-1:exon:10280;Parent=Msa1154570-mRNA-1
chr7_4 exon 42076642 42077183 42076642 ID=Msa1154570-mRNA-1:exon:10281;Parent=Msa1154570-mRNA-1
chr7_4 CDS 42075750 42076275 42075750 ID=Msa1154570-mRNA-1:cds;Parent=Msa1154570-mRNA-1
chr7_4 CDS 42076642 42076976 42076642 ID=Msa1154570-mRNA-1:cds;Parent=Msa1154570-mRNA-1
chr7_4 three_prime_UTR 42076977 42077183 42076977 ID=Msa1154570-mRNA-1:three_prime_utr;Parent=Msa1154570-mRNA-1
Gene Sequence

>Msa1154570

GAACGTAAGAGGGATGTTAGCTTCCTGACAAATCTACCCGGTGCATCCGAAAAGCTACATTTCTTCAACGCCGATCTAAGCAACCCAGACAGTTTTGCTGCAGCAATCGAAGGATGTGTCGGGATATTCCACACCGCTTCACCAATTGACTTCGCCGTGAGTGAACCAGAAGAAATAGTGACAAAAAGAACCGTCGATGGCGCATTAGGCATTTTAAAAGCATGTGTGAATTCAAAGACAGTGAAGAGGTTTATATACACTTCAAGTGGTTCTGCTGTTTCATTCAATGGAAAAGACAATGATGTGTTGGATGAGAGTGATTGGAGTGATGTTGATTTGCTTAGAAGTGTTAAACCATTTGGTTGGAATTATGCTGTTTCTAAGACTTTGGCTGAGAAAGCTGTTCTTGAATTTGGTGAACAAAATGGGATTGATGTTGTTACTTTGATTCTTCCTTTTATTGTTGGTCGTTTTGTTTGTCCTAAGCTTCCTGATTCTATTGAGAAAGCCCTTGTTTTGGTATTAGGCAAAAAAGAACAAATTGGTGTGACACGTTTCCACATGGTACATGTTGATGATGTAGCTAGGGCACATATATATCTACTTGAGAATTCTGTTCCGGGAGGTAGATACAATTGCTCACCATTCATTGTACCTATTGAAGAGATGTCTCAACTTCTTTCAGCCAAATATCCAGAATATCAAATACTAACAGTAGATGAGTTGAAGGAAATTAAAGGTGCAAGGTTACCAGATTTAAACACGAAGAAACTCGTGGATGCTGGTTTCGAATTTAAGTACACTATCGAAGATATGTTCGACGATGCAATTCAATGTTGCAAGGAGAAAGGCTATCTCTAA

Protein sequence

>Msa1154570

ERKRDVSFLTNLPGASEKLHFFNADLSNPDSFAAAIEGCVGIFHTASPIDFAVSEPEEIVTKRTVDGALGILKACVNSKTVKRFIYTSSGSAVSFNGKDNDVLDESDWSDVDLLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKLPDSIEKALVLVLGKKEQIGVTRFHMVHVDDVARAHIYLLENSVPGGRYNCSPFIVPIEEMSQLLSAKYPEYQILTVDELKEIKGARLPDLNTKKLVDAGFEFKYTIEDMFDDAIQCCKEKGYL*