Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723770 | XP_003613392.1 | 71.827 | 323 | 26 | 4 | 1 | 259 | 1 | 322 | 4.80e-150 | 431 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723770 | sp|O04529|2MMP_ARATH | 44.444 | 216 | 84 | 9 | 73 | 258 | 117 | 326 | 8.25e-44 | 155 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723770 | G7K5I7 | 71.827 | 323 | 26 | 4 | 1 | 259 | 1 | 322 | 2.29e-150 | 431 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014280 | Msa0723770 | 0.811771 | 5.926787e-51 | -8.615850e-47 |
| Msa0034540 | Msa0723770 | 0.810853 | 9.374647e-51 | -8.615850e-47 |
| Msa0052580 | Msa0723770 | 0.806902 | 6.562977e-50 | -8.615850e-47 |
| Msa0078700 | Msa0723770 | 0.822613 | 2.157187e-53 | -8.615850e-47 |
| Msa0095940 | Msa0723770 | 0.843730 | 1.170768e-58 | -8.615850e-47 |
| Msa0107830 | Msa0723770 | 0.810600 | 1.063574e-50 | -8.615850e-47 |
| Msa0603300 | Msa0723770 | 0.833285 | 5.821876e-56 | -8.615850e-47 |
| Msa0631130 | Msa0723770 | 0.810388 | 1.181710e-50 | -8.615850e-47 |
| Msa0637590 | Msa0723770 | 0.833854 | 4.197601e-56 | -8.615850e-47 |
| Msa0652590 | Msa0723770 | 0.801982 | 6.963559e-49 | -8.615850e-47 |
| Msa0657340 | Msa0723770 | 0.800428 | 1.447658e-48 | -8.615850e-47 |
| Msa0669350 | Msa0723770 | 0.817228 | 3.676718e-52 | -8.615850e-47 |
| Msa0684130 | Msa0723770 | 0.824562 | 7.547796e-54 | -8.615850e-47 |
| Msa0701430 | Msa0723770 | 0.805778 | 1.132471e-49 | -8.615850e-47 |
| Msa0703030 | Msa0723770 | 0.800151 | 1.648655e-48 | -8.615850e-47 |
| Msa0717860 | Msa0723770 | 0.822185 | 2.712015e-53 | -8.615850e-47 |
| Msa0723770 | Msa0731580 | 0.826445 | 2.702409e-54 | -8.615850e-47 |
| Msa0723770 | Msa0744640 | 0.820638 | 6.169611e-53 | -8.615850e-47 |
| Msa0723770 | Msa0744710 | 0.819836 | 9.423160e-53 | -8.615850e-47 |
| Msa0723770 | Msa0745730 | 0.832803 | 7.674963e-56 | -8.615850e-47 |
| Msa0723770 | Msa0753930 | 0.825260 | 5.163762e-54 | -8.615850e-47 |
| Msa0723770 | Msa0754480 | 0.812819 | 3.498885e-51 | -8.615850e-47 |
| Msa0723770 | Msa0758520 | 0.834716 | 2.551318e-56 | -8.615850e-47 |
| Msa0723770 | Msa0758570 | 0.839145 | 1.887239e-57 | -8.615850e-47 |
| Msa0723770 | Msa0765140 | 0.836399 | 9.576596e-57 | -8.615850e-47 |
| Msa0723770 | Msa0771810 | 0.801792 | 7.616094e-49 | -8.615850e-47 |
| Msa0723770 | Msa0809920 | 0.816667 | 4.914672e-52 | -8.615850e-47 |
| Msa0723770 | Msa0826240 | 0.820839 | 5.548277e-53 | -8.615850e-47 |
| Msa0723770 | Msa0826980 | 0.805643 | 1.209273e-49 | -8.615850e-47 |
| Msa0723770 | Msa0832950 | 0.840206 | 9.999508e-58 | -8.615850e-47 |
| Msa0723770 | Msa0833270 | 0.839479 | 1.546162e-57 | -8.615850e-47 |
| Msa0723770 | Msa0838870 | 0.853229 | 2.742781e-61 | -8.615850e-47 |
| Msa0723770 | Msa0841730 | 0.818382 | 2.017932e-52 | -8.615850e-47 |
| Msa0723770 | Msa0843950 | 0.851247 | 1.005007e-60 | -8.615850e-47 |
| Msa0723770 | Msa0905570 | 0.810995 | 8.736732e-51 | -8.615850e-47 |
| Msa0723770 | Msa0966580 | 0.835616 | 1.512852e-56 | -8.615850e-47 |
| Msa0723770 | Msa1016100 | 0.808782 | 2.614699e-50 | -8.615850e-47 |
| Msa0723770 | Msa1021300 | 0.815901 | 7.290290e-52 | -8.615850e-47 |
| Msa0723770 | Msa1026890 | 0.801800 | 7.590839e-49 | -8.615850e-47 |
| Msa0723770 | Msa1027340 | 0.810134 | 1.340731e-50 | -8.615850e-47 |
| Msa0723770 | Msa1027400 | 0.811266 | 7.627631e-51 | -8.615850e-47 |
| Msa0723770 | Msa1030200 | 0.824329 | 8.560380e-54 | -8.615850e-47 |
| Msa0723770 | Msa1030210 | 0.840637 | 7.712287e-58 | -8.615850e-47 |
| Msa0723770 | Msa1030240 | 0.808437 | 3.098183e-50 | -8.615850e-47 |
| Msa0723770 | Msa1034950 | 0.800814 | 1.208196e-48 | -8.615850e-47 |
| Msa0723770 | Msa1035050 | 0.820332 | 7.252215e-53 | -8.615850e-47 |
| Msa0723770 | Msa1069250 | 0.809605 | 1.742023e-50 | -8.615850e-47 |
| Msa0723770 | Msa1075010 | 0.800521 | 1.385901e-48 | -8.615850e-47 |
| Msa0723770 | Msa1075090 | 0.834071 | 3.704153e-56 | -8.615850e-47 |
| Msa0723770 | Msa1077970 | 0.841036 | 6.062617e-58 | -8.615850e-47 |
| Msa0723770 | Msa1102210 | 0.829652 | 4.565665e-55 | -8.615850e-47 |
| Msa0723770 | Msa1115980 | 0.804149 | 2.480735e-49 | -8.615850e-47 |
| Msa0723770 | Msa1120580 | 0.831943 | 1.253219e-55 | -8.615850e-47 |
| Msa0723770 | Msa1131120 | 0.814664 | 1.373199e-51 | -8.615850e-47 |
| Msa0723770 | Msa1154570 | 0.810131 | 1.342590e-50 | -8.615850e-47 |
| Msa0723770 | Msa1157110 | 0.831756 | 1.393298e-55 | -8.615850e-47 |
| Msa0723770 | Msa1187490 | 0.811522 | 6.713022e-51 | -8.615850e-47 |
| Msa0723770 | Msa1202110 | 0.806320 | 8.711219e-50 | -8.615850e-47 |
| Msa0723770 | Msa1211610 | 0.800410 | 1.459975e-48 | -8.615850e-47 |
| Msa0723770 | Msa1254870 | 0.804665 | 1.936867e-49 | -8.615850e-47 |
| Msa0723770 | Msa1280960 | 0.814068 | 1.859949e-51 | -8.615850e-47 |
| Msa0723770 | Msa1322150 | 0.803393 | 3.561627e-49 | -8.615850e-47 |
| Msa0723770 | Msa1328430 | 0.803993 | 2.673567e-49 | -8.615850e-47 |
| Msa0723770 | Msa1395110 | 0.812022 | 5.225804e-51 | -8.615850e-47 |
| Msa0723770 | Msa1395250 | 0.818543 | 1.855915e-52 | -8.615850e-47 |
| Msa0723770 | Msa1404050 | 0.841008 | 6.163410e-58 | -8.615850e-47 |
| Msa0723770 | Msa1405530 | 0.838920 | 2.158658e-57 | -8.615850e-47 |
| Msa0723770 | Msa1413800 | 0.808078 | 3.695307e-50 | -8.615850e-47 |
| Msa0723770 | Msa1435320 | 0.831453 | 1.655388e-55 | -8.615850e-47 |
| Msa0723770 | Msa1436090 | 0.805513 | 1.287287e-49 | -8.615850e-47 |
| Msa0723770 | Msa1443400 | 0.831606 | 1.517547e-55 | -8.615850e-47 |
| Msa0723770 | Msa1448040 | 0.831689 | 1.447974e-55 | -8.615850e-47 |
| Msa0723770 | Msa1455200 | 0.803623 | 3.191127e-49 | -8.615850e-47 |
| Msa0129770 | Msa0723770 | 0.811746 | 5.999675e-51 | -8.615850e-47 |
| Msa0150640 | Msa0723770 | 0.811027 | 8.597724e-51 | -8.615850e-47 |
| Msa0185040 | Msa0723770 | 0.801852 | 7.404064e-49 | -8.615850e-47 |
| Msa0193950 | Msa0723770 | 0.804771 | 1.841004e-49 | -8.615850e-47 |
| Msa0203090 | Msa0723770 | 0.800019 | 1.754069e-48 | -8.615850e-47 |
| Msa0204140 | Msa0723770 | 0.803160 | 3.980013e-49 | -8.615850e-47 |
| Msa0383900 | Msa0723770 | 0.824188 | 9.240263e-54 | -8.615850e-47 |
| Msa0390200 | Msa0723770 | 0.811356 | 7.294977e-51 | -8.615850e-47 |
| Msa0405210 | Msa0723770 | 0.807199 | 5.679824e-50 | -8.615850e-47 |
| Msa0434300 | Msa0723770 | 0.809219 | 2.108285e-50 | -8.615850e-47 |
| Msa0434400 | Msa0723770 | 0.822777 | 1.975722e-53 | -8.615850e-47 |
| Msa0441260 | Msa0723770 | 0.809793 | 1.587693e-50 | -8.615850e-47 |
| Msa0442860 | Msa0723770 | 0.819134 | 1.362084e-52 | -8.615850e-47 |
| Msa0459860 | Msa0723770 | 0.806175 | 9.347645e-50 | -8.615850e-47 |
| Msa0271720 | Msa0723770 | 0.800641 | 1.310140e-48 | -8.615850e-47 |
| Msa0285890 | Msa0723770 | 0.813357 | 2.667025e-51 | -8.615850e-47 |
| Msa0296900 | Msa0723770 | 0.804041 | 2.612613e-49 | -8.615850e-47 |
| Msa0306310 | Msa0723770 | 0.830096 | 3.559833e-55 | -8.615850e-47 |
| Msa0310190 | Msa0723770 | 0.808619 | 2.833292e-50 | -8.615850e-47 |
| Msa0319680 | Msa0723770 | 0.812228 | 4.711499e-51 | -8.615850e-47 |
| Msa0320170 | Msa0723770 | 0.861228 | 1.189033e-63 | -8.615850e-47 |
| Msa0335080 | Msa0723770 | 0.810000 | 1.432677e-50 | -8.615850e-47 |
| Msa0345890 | Msa0723770 | 0.842335 | 2.754084e-58 | -8.615850e-47 |
| Msa0488580 | Msa0723770 | 0.811587 | 6.496568e-51 | -8.615850e-47 |
| Msa0488660 | Msa0723770 | 0.812325 | 4.487123e-51 | -8.615850e-47 |
| Msa0497690 | Msa0723770 | 0.842889 | 1.962023e-58 | -8.615850e-47 |
| Msa0522140 | Msa0723770 | 0.806292 | 8.830799e-50 | -8.615850e-47 |
| Msa0522170 | Msa0723770 | 0.800675 | 1.289622e-48 | -8.615850e-47 |
| Msa0534610 | Msa0723770 | 0.830225 | 3.310013e-55 | -8.615850e-47 |
| Msa0548410 | Msa0723770 | 0.820868 | 5.462596e-53 | -8.615850e-47 |
| Msa0557240 | Msa0723770 | 0.811181 | 7.961050e-51 | -8.615850e-47 |
| Msa0565180 | Msa0723770 | 0.801746 | 7.784183e-49 | -8.615850e-47 |
| Msa0566530 | Msa0723770 | 0.810973 | 8.831039e-51 | -8.615850e-47 |
| Msa0590810 | Msa0723770 | 0.828532 | 8.532863e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723770 | MtrunA17_Chr5g0414641 | 71.827 | 323 | 26 | 4 | 1 | 259 | 1 | 322 | 4.41e-154 | 431 |
| Msa0723770 | MtrunA17_Chr5g0414891 | 43.541 | 209 | 88 | 9 | 74 | 258 | 126 | 328 | 1.29e-43 | 151 |
| Msa0723770 | MtrunA17_Chr8g0364281 | 41.589 | 214 | 93 | 5 | 73 | 258 | 156 | 365 | 1.91e-43 | 152 |
| Msa0723770 | MtrunA17_Chr5g0414657 | 37.681 | 207 | 107 | 8 | 65 | 255 | 112 | 312 | 1.23e-33 | 124 |
| Msa0723770 | MtrunA17_Chr5g0414791 | 37.255 | 204 | 109 | 8 | 66 | 259 | 139 | 333 | 3.19e-33 | 124 |
| Msa0723770 | MtrunA17_Chr5g0414821 | 34.545 | 220 | 123 | 8 | 51 | 259 | 147 | 356 | 7.82e-32 | 120 |
| Msa0723770 | MtrunA17_Chr8g0334661 | 34.483 | 203 | 113 | 5 | 74 | 258 | 109 | 309 | 1.54e-30 | 116 |
| Msa0723770 | MtrunA17_Chr5g0399301 | 36.548 | 197 | 109 | 7 | 74 | 258 | 123 | 315 | 1.04e-29 | 114 |
| Msa0723770 | MtrunA17_Chr5g0414661 | 32.394 | 213 | 117 | 8 | 66 | 259 | 84 | 288 | 1.01e-27 | 108 |
| Msa0723770 | MtrunA17_Chr5g0414654 | 35.233 | 193 | 101 | 8 | 73 | 259 | 103 | 277 | 9.17e-27 | 105 |
| Msa0723770 | MtrunA17_Chr5g0414771 | 36.139 | 202 | 98 | 10 | 73 | 255 | 63 | 252 | 2.93e-25 | 101 |
| Msa0723770 | MtrunA17_Chr5g0414831 | 36.641 | 131 | 70 | 4 | 125 | 242 | 1 | 131 | 2.14e-20 | 84.3 |
| Msa0723770 | MtrunA17_Chr6g0451671 | 26.667 | 225 | 120 | 9 | 68 | 255 | 113 | 329 | 3.47e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723770 | AT1G70170.1 | 44.444 | 216 | 84 | 9 | 73 | 258 | 117 | 326 | 8.38e-45 | 155 |
| Msa0723770 | AT1G59970.1 | 41.584 | 202 | 93 | 8 | 74 | 255 | 117 | 313 | 2.88e-40 | 142 |
| Msa0723770 | AT1G24140.1 | 38.249 | 217 | 98 | 6 | 73 | 258 | 120 | 331 | 3.58e-40 | 143 |
| Msa0723770 | AT2G45040.1 | 35.678 | 199 | 112 | 6 | 73 | 258 | 103 | 298 | 9.44e-29 | 112 |
| Msa0723770 | AT4G16640.1 | 35.922 | 206 | 101 | 10 | 73 | 258 | 127 | 321 | 1.22e-28 | 112 |
Find 52 sgRNAs with CRISPR-Local
Find 142 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAGGATTCAGGAAATTTA+TGG | 0.175194 | 5_1:+21743377 | Msa0723770:CDS |
| ATTGAGACAACGTCGTTTAA+TGG | 0.197767 | 5_1:+21743065 | Msa0723770:CDS |
| CATCAGGTTGGTCATTTACT+AGG | 0.272161 | 5_1:+21743266 | Msa0723770:CDS |
| TGATGATTTGCAGAGGATTC+AGG | 0.285562 | 5_1:+21743367 | Msa0723770:CDS |
| AGTTATGCGTTTAAGATAGA+AGG | 0.301172 | 5_1:-21742344 | None:intergenic |
| GTTGGTCATTTACTAGGGTT+GGG | 0.310483 | 5_1:+21743272 | Msa0723770:CDS |
| GTTGGTAAAATTGTTCTTCA+TGG | 0.354896 | 5_1:-21742892 | None:intergenic |
| TGAAGAGGATGATGTGGATT+TGG | 0.356149 | 5_1:+21743229 | Msa0723770:CDS |
| GGTTGGTCATTTACTAGGGT+TGG | 0.365107 | 5_1:+21743271 | Msa0723770:CDS |
| CTAACTATTAATCCAATTGC+TGG | 0.408047 | 5_1:-21742310 | None:intergenic |
| AGAGGATTCAGGAAATTTAT+GGG | 0.409371 | 5_1:+21743378 | Msa0723770:CDS |
| CTTGAGTTTATTCCAGATGC+TGG | 0.411033 | 5_1:-21742383 | None:intergenic |
| TTCAACAAAGCTCTAGAGAT+TGG | 0.411452 | 5_1:+21742412 | Msa0723770:CDS |
| AATTGCTGGTGCAAAAGAAA+TGG | 0.419697 | 5_1:-21742296 | None:intergenic |
| TTGTCTGTGACATTATTCTC+TGG | 0.424910 | 5_1:-21742981 | None:intergenic |
| TAATGTTGGCAGTGTATACT+TGG | 0.438145 | 5_1:+21743166 | Msa0723770:CDS |
| GTGGTTCCATTGATTATGTC+GGG | 0.454466 | 5_1:-21742867 | None:intergenic |
| GATGGAAAAGGTGGAACGGT+TGG | 0.463287 | 5_1:+21743119 | Msa0723770:CDS |
| GGAATCTGTTGTGATGCATC+AGG | 0.478591 | 5_1:+21743250 | Msa0723770:CDS |
| GTTGGGGCATTCTTCTGTTG+AGG | 0.484015 | 5_1:+21743289 | Msa0723770:CDS |
| AAAATTGTTCTTCATGGTGG+TGG | 0.486740 | 5_1:-21742886 | None:intergenic |
| TAATACTAAGAGAAACATAT+AGG | 0.496205 | 5_1:-21742245 | None:intergenic |
| GGAAAAGGTGGAACGGTTGG+AGG | 0.500795 | 5_1:+21743122 | Msa0723770:CDS |
| TTGGTCATTTACTAGGGTTG+GGG | 0.511212 | 5_1:+21743273 | Msa0723770:CDS |
| GGGGCATTCTTCTGTTGAGG+AGG | 0.515125 | 5_1:+21743292 | Msa0723770:CDS |
| GTTATGCGTTTAAGATAGAA+GGG | 0.525080 | 5_1:-21742343 | None:intergenic |
| ATCAGGTTGGTCATTTACTA+GGG | 0.525281 | 5_1:+21743267 | Msa0723770:CDS |
| TGGTGCAAAAGAAATGGATT+CGG | 0.529226 | 5_1:-21742290 | None:intergenic |
| ATAAACAATAGTGTTAATGT+TGG | 0.540054 | 5_1:+21743152 | Msa0723770:CDS |
| TGTCTGTGACATTATTCTCT+GGG | 0.544259 | 5_1:-21742980 | None:intergenic |
| TTCTCCACGTTCCTCCACCA+CGG | 0.547332 | 5_1:-21742933 | None:intergenic |
| CTTGGATGCAGATGAACAAT+GGG | 0.548416 | 5_1:+21743184 | Msa0723770:CDS |
| TTCAAGACGCGTTTAACCGT+TGG | 0.554534 | 5_1:+21743018 | Msa0723770:CDS |
| ATGCAGTTGCATTTGACCAA+CGG | 0.555946 | 5_1:-21743034 | None:intergenic |
| GGTGTTCCCGACATAATCAA+TGG | 0.556418 | 5_1:+21742861 | Msa0723770:CDS |
| GGTGGTTCCATTGATTATGT+CGG | 0.558548 | 5_1:-21742868 | None:intergenic |
| GGTAAAATTGTTCTTCATGG+TGG | 0.565995 | 5_1:-21742889 | None:intergenic |
| TTAACGTTGGATGGAAAAGG+TGG | 0.570801 | 5_1:+21743110 | Msa0723770:CDS |
| TAGTGAAAATGTTGTTGAAG+AGG | 0.578234 | 5_1:+21743214 | Msa0723770:CDS |
| GCAAGAAAAGAAGATTGAGT+TGG | 0.588378 | 5_1:+21743337 | Msa0723770:CDS |
| TGTTGTTGAAGAGGATGATG+TGG | 0.588380 | 5_1:+21743223 | Msa0723770:CDS |
| CGTCGTTTAAACCGTGGTGG+AGG | 0.600911 | 5_1:+21742922 | Msa0723770:CDS |
| TAAACCGTGGTGGAGGAACG+TGG | 0.611698 | 5_1:+21742929 | Msa0723770:CDS |
| ATTATTTCAAAGCCACGTTG+TGG | 0.619324 | 5_1:+21742840 | Msa0723770:intron |
| ACTTGGATGCAGATGAACAA+TGG | 0.620398 | 5_1:+21743183 | Msa0723770:CDS |
| GAGGATTCAGGAAATTTATG+GGG | 0.645357 | 5_1:+21743379 | Msa0723770:CDS |
| TCTGTTGTGATGCATCAGGT+TGG | 0.665536 | 5_1:+21743254 | Msa0723770:CDS |
| CAGCGTCGTTTAAACCGTGG+TGG | 0.668848 | 5_1:+21742919 | Msa0723770:CDS |
| TGAATGATGATGATTTGCAG+AGG | 0.675761 | 5_1:+21743360 | Msa0723770:CDS |
| GTTGGATGGAAAAGGTGGAA+CGG | 0.688325 | 5_1:+21743115 | Msa0723770:CDS |
| AAACAGCGTCGTTTAAACCG+TGG | 0.715782 | 5_1:+21742916 | Msa0723770:CDS |
| ATGTCGGGAACACCACAACG+TGG | 0.747885 | 5_1:-21742852 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGTAAATATTCTTTCAAAT+CGG | - | chr5_1:21742458-21742477 | None:intergenic | 15.0% |
| !! | AAAGAATATTTACAATTCTT+CGG | + | chr5_1:21742463-21742482 | Msa0723770:intron | 15.0% |
| !! | TTGTAAATATTCTTTCAAAT+CGG | - | chr5_1:21742458-21742477 | None:intergenic | 15.0% |
| !! | AAAGAATATTTACAATTCTT+CGG | + | chr5_1:21742463-21742482 | Msa0723770:intron | 15.0% |
| !! | TAATACTAAGAGAAACATAT+AGG | - | chr5_1:21742248-21742267 | None:intergenic | 20.0% |
| !! | GGTAAGATAAATACTTATAT+AGG | + | chr5_1:21742592-21742611 | Msa0723770:intron | 20.0% |
| !!! | CGTATCTAAATGATTTTTTT+TGG | - | chr5_1:21742625-21742644 | None:intergenic | 20.0% |
| !! | ACAATCCAAATGAAATTTAT+TGG | - | chr5_1:21742770-21742789 | None:intergenic | 20.0% |
| !! | ATAAACAATAGTGTTAATGT+TGG | + | chr5_1:21743152-21743171 | Msa0723770:CDS | 20.0% |
| !! | TAATACTAAGAGAAACATAT+AGG | - | chr5_1:21742248-21742267 | None:intergenic | 20.0% |
| !! | GGTAAGATAAATACTTATAT+AGG | + | chr5_1:21742592-21742611 | Msa0723770:intron | 20.0% |
| !!! | CGTATCTAAATGATTTTTTT+TGG | - | chr5_1:21742625-21742644 | None:intergenic | 20.0% |
| !! | ACAATCCAAATGAAATTTAT+TGG | - | chr5_1:21742770-21742789 | None:intergenic | 20.0% |
| !! | ATAAACAATAGTGTTAATGT+TGG | + | chr5_1:21743152-21743171 | Msa0723770:CDS | 20.0% |
| ! | AATTTCAATCTCAATACTAC+AGG | + | chr5_1:21742571-21742590 | Msa0723770:intron | 25.0% |
| ! | ATAAATACTTATATAGGCAC+CGG | + | chr5_1:21742598-21742617 | Msa0723770:intron | 25.0% |
| !!! | CTAAATGATTTTTTTTGGAC+CGG | - | chr5_1:21742620-21742639 | None:intergenic | 25.0% |
| ! | AATTTCAATCTCAATACTAC+AGG | + | chr5_1:21742571-21742590 | Msa0723770:intron | 25.0% |
| ! | ATAAATACTTATATAGGCAC+CGG | + | chr5_1:21742598-21742617 | Msa0723770:intron | 25.0% |
| !!! | CTAAATGATTTTTTTTGGAC+CGG | - | chr5_1:21742620-21742639 | None:intergenic | 25.0% |
| CTAACTATTAATCCAATTGC+TGG | - | chr5_1:21742313-21742332 | None:intergenic | 30.0% | |
| ! | GTTATGCGTTTAAGATAGAA+GGG | - | chr5_1:21742346-21742365 | None:intergenic | 30.0% |
| ! | AGTTATGCGTTTAAGATAGA+AGG | - | chr5_1:21742347-21742366 | None:intergenic | 30.0% |
| ! | GTAAATTATTTTCCAGCATC+TGG | + | chr5_1:21742371-21742390 | Msa0723770:CDS | 30.0% |
| AATGCAAAGTTGAAGAGTTT+AGG | - | chr5_1:21742492-21742511 | None:intergenic | 30.0% | |
| CGTGTCCAATAAATTTCATT+TGG | + | chr5_1:21742762-21742781 | Msa0723770:intron | 30.0% | |
| ! | GTTGGTAAAATTGTTCTTCA+TGG | - | chr5_1:21742895-21742914 | None:intergenic | 30.0% |
| ! | TTTTTAACGTTGGATGGAAA+AGG | + | chr5_1:21743107-21743126 | Msa0723770:CDS | 30.0% |
| TAGTGAAAATGTTGTTGAAG+AGG | + | chr5_1:21743214-21743233 | Msa0723770:CDS | 30.0% | |
| ! | TTCTTTTCTTGCAACACAAT+CGG | - | chr5_1:21743329-21743348 | None:intergenic | 30.0% |
| AGAGGATTCAGGAAATTTAT+GGG | + | chr5_1:21743378-21743397 | Msa0723770:CDS | 30.0% | |
| CTAACTATTAATCCAATTGC+TGG | - | chr5_1:21742313-21742332 | None:intergenic | 30.0% | |
| ! | GTTATGCGTTTAAGATAGAA+GGG | - | chr5_1:21742346-21742365 | None:intergenic | 30.0% |
| ! | AGTTATGCGTTTAAGATAGA+AGG | - | chr5_1:21742347-21742366 | None:intergenic | 30.0% |
| ! | GTAAATTATTTTCCAGCATC+TGG | + | chr5_1:21742371-21742390 | Msa0723770:CDS | 30.0% |
| AATGCAAAGTTGAAGAGTTT+AGG | - | chr5_1:21742492-21742511 | None:intergenic | 30.0% | |
| CGTGTCCAATAAATTTCATT+TGG | + | chr5_1:21742762-21742781 | Msa0723770:intron | 30.0% | |
| ! | GTTGGTAAAATTGTTCTTCA+TGG | - | chr5_1:21742895-21742914 | None:intergenic | 30.0% |
| ! | TTTTTAACGTTGGATGGAAA+AGG | + | chr5_1:21743107-21743126 | Msa0723770:CDS | 30.0% |
| TAGTGAAAATGTTGTTGAAG+AGG | + | chr5_1:21743214-21743233 | Msa0723770:CDS | 30.0% | |
| ! | TTCTTTTCTTGCAACACAAT+CGG | - | chr5_1:21743329-21743348 | None:intergenic | 30.0% |
| AGAGGATTCAGGAAATTTAT+GGG | + | chr5_1:21743378-21743397 | Msa0723770:CDS | 30.0% | |
| ! | TGGTGCAAAAGAAATGGATT+CGG | - | chr5_1:21742293-21742312 | None:intergenic | 35.0% |
| AATTGCTGGTGCAAAAGAAA+TGG | - | chr5_1:21742299-21742318 | None:intergenic | 35.0% | |
| ! | ATTTCTTTTGCACCAGCAAT+TGG | + | chr5_1:21742298-21742317 | Msa0723770:CDS | 35.0% |
| !! | TTCAACAAAGCTCTAGAGAT+TGG | + | chr5_1:21742412-21742431 | Msa0723770:CDS | 35.0% |
| TCAAACAAATTGTTCTCTGC+AGG | + | chr5_1:21742792-21742811 | Msa0723770:intron | 35.0% | |
| ATTATTTCAAAGCCACGTTG+TGG | + | chr5_1:21742840-21742859 | Msa0723770:intron | 35.0% | |
| AAAATTGTTCTTCATGGTGG+TGG | - | chr5_1:21742889-21742908 | None:intergenic | 35.0% | |
| GGTAAAATTGTTCTTCATGG+TGG | - | chr5_1:21742892-21742911 | None:intergenic | 35.0% | |
| !! | TTTAAACGACGCTGTTTTGT+TGG | - | chr5_1:21742913-21742932 | None:intergenic | 35.0% |
| TGTCTGTGACATTATTCTCT+GGG | - | chr5_1:21742983-21743002 | None:intergenic | 35.0% | |
| TTGTCTGTGACATTATTCTC+TGG | - | chr5_1:21742984-21743003 | None:intergenic | 35.0% | |
| ATTGAGACAACGTCGTTTAA+TGG | + | chr5_1:21743065-21743084 | Msa0723770:CDS | 35.0% | |
| ! | TCGTATAGCGTTTTTAACGT+TGG | + | chr5_1:21743097-21743116 | Msa0723770:CDS | 35.0% |
| ! | ATAGCGTTTTTAACGTTGGA+TGG | + | chr5_1:21743101-21743120 | Msa0723770:CDS | 35.0% |
| TAATGTTGGCAGTGTATACT+TGG | + | chr5_1:21743166-21743185 | Msa0723770:CDS | 35.0% | |
| !! | ATCAGGTTGGTCATTTACTA+GGG | + | chr5_1:21743267-21743286 | Msa0723770:CDS | 35.0% |
| GCAAGAAAAGAAGATTGAGT+TGG | + | chr5_1:21743337-21743356 | Msa0723770:CDS | 35.0% | |
| ! | TGAATGATGATGATTTGCAG+AGG | + | chr5_1:21743360-21743379 | Msa0723770:CDS | 35.0% |
| CAGAGGATTCAGGAAATTTA+TGG | + | chr5_1:21743377-21743396 | Msa0723770:CDS | 35.0% | |
| GAGGATTCAGGAAATTTATG+GGG | + | chr5_1:21743379-21743398 | Msa0723770:CDS | 35.0% | |
| ! | TGGTGCAAAAGAAATGGATT+CGG | - | chr5_1:21742293-21742312 | None:intergenic | 35.0% |
| AATTGCTGGTGCAAAAGAAA+TGG | - | chr5_1:21742299-21742318 | None:intergenic | 35.0% | |
| ! | ATTTCTTTTGCACCAGCAAT+TGG | + | chr5_1:21742298-21742317 | Msa0723770:CDS | 35.0% |
| !! | TTCAACAAAGCTCTAGAGAT+TGG | + | chr5_1:21742412-21742431 | Msa0723770:CDS | 35.0% |
| TCAAACAAATTGTTCTCTGC+AGG | + | chr5_1:21742792-21742811 | Msa0723770:intron | 35.0% | |
| ATTATTTCAAAGCCACGTTG+TGG | + | chr5_1:21742840-21742859 | Msa0723770:intron | 35.0% | |
| AAAATTGTTCTTCATGGTGG+TGG | - | chr5_1:21742889-21742908 | None:intergenic | 35.0% | |
| GGTAAAATTGTTCTTCATGG+TGG | - | chr5_1:21742892-21742911 | None:intergenic | 35.0% | |
| !! | TTTAAACGACGCTGTTTTGT+TGG | - | chr5_1:21742913-21742932 | None:intergenic | 35.0% |
| TGTCTGTGACATTATTCTCT+GGG | - | chr5_1:21742983-21743002 | None:intergenic | 35.0% | |
| TTGTCTGTGACATTATTCTC+TGG | - | chr5_1:21742984-21743003 | None:intergenic | 35.0% | |
| ATTGAGACAACGTCGTTTAA+TGG | + | chr5_1:21743065-21743084 | Msa0723770:CDS | 35.0% | |
| ! | TCGTATAGCGTTTTTAACGT+TGG | + | chr5_1:21743097-21743116 | Msa0723770:CDS | 35.0% |
| ! | ATAGCGTTTTTAACGTTGGA+TGG | + | chr5_1:21743101-21743120 | Msa0723770:CDS | 35.0% |
| TAATGTTGGCAGTGTATACT+TGG | + | chr5_1:21743166-21743185 | Msa0723770:CDS | 35.0% | |
| !! | ATCAGGTTGGTCATTTACTA+GGG | + | chr5_1:21743267-21743286 | Msa0723770:CDS | 35.0% |
| GCAAGAAAAGAAGATTGAGT+TGG | + | chr5_1:21743337-21743356 | Msa0723770:CDS | 35.0% | |
| ! | TGAATGATGATGATTTGCAG+AGG | + | chr5_1:21743360-21743379 | Msa0723770:CDS | 35.0% |
| CAGAGGATTCAGGAAATTTA+TGG | + | chr5_1:21743377-21743396 | Msa0723770:CDS | 35.0% | |
| GAGGATTCAGGAAATTTATG+GGG | + | chr5_1:21743379-21743398 | Msa0723770:CDS | 35.0% | |
| CTTGAGTTTATTCCAGATGC+TGG | - | chr5_1:21742386-21742405 | None:intergenic | 40.0% | |
| ! | GTGGTTCCATTGATTATGTC+GGG | - | chr5_1:21742870-21742889 | None:intergenic | 40.0% |
| ! | GGTGGTTCCATTGATTATGT+CGG | - | chr5_1:21742871-21742890 | None:intergenic | 40.0% |
| ATGCAGTTGCATTTGACCAA+CGG | - | chr5_1:21743037-21743056 | None:intergenic | 40.0% | |
| TTAACGTTGGATGGAAAAGG+TGG | + | chr5_1:21743110-21743129 | Msa0723770:CDS | 40.0% | |
| ACTTGGATGCAGATGAACAA+TGG | + | chr5_1:21743183-21743202 | Msa0723770:CDS | 40.0% | |
| CTTGGATGCAGATGAACAAT+GGG | + | chr5_1:21743184-21743203 | Msa0723770:CDS | 40.0% | |
| TGTTGTTGAAGAGGATGATG+TGG | + | chr5_1:21743223-21743242 | Msa0723770:CDS | 40.0% | |
| TGAAGAGGATGATGTGGATT+TGG | + | chr5_1:21743229-21743248 | Msa0723770:CDS | 40.0% | |
| !! | CATCAGGTTGGTCATTTACT+AGG | + | chr5_1:21743266-21743285 | Msa0723770:CDS | 40.0% |
| GTTGGTCATTTACTAGGGTT+GGG | + | chr5_1:21743272-21743291 | Msa0723770:CDS | 40.0% | |
| TTGGTCATTTACTAGGGTTG+GGG | + | chr5_1:21743273-21743292 | Msa0723770:CDS | 40.0% | |
| ! | TGATGATTTGCAGAGGATTC+AGG | + | chr5_1:21743367-21743386 | Msa0723770:CDS | 40.0% |
| CTTGAGTTTATTCCAGATGC+TGG | - | chr5_1:21742386-21742405 | None:intergenic | 40.0% | |
| ! | GTGGTTCCATTGATTATGTC+GGG | - | chr5_1:21742870-21742889 | None:intergenic | 40.0% |
| ! | GGTGGTTCCATTGATTATGT+CGG | - | chr5_1:21742871-21742890 | None:intergenic | 40.0% |
| ATGCAGTTGCATTTGACCAA+CGG | - | chr5_1:21743037-21743056 | None:intergenic | 40.0% | |
| TTAACGTTGGATGGAAAAGG+TGG | + | chr5_1:21743110-21743129 | Msa0723770:CDS | 40.0% | |
| ACTTGGATGCAGATGAACAA+TGG | + | chr5_1:21743183-21743202 | Msa0723770:CDS | 40.0% | |
| CTTGGATGCAGATGAACAAT+GGG | + | chr5_1:21743184-21743203 | Msa0723770:CDS | 40.0% | |
| TGTTGTTGAAGAGGATGATG+TGG | + | chr5_1:21743223-21743242 | Msa0723770:CDS | 40.0% | |
| TGAAGAGGATGATGTGGATT+TGG | + | chr5_1:21743229-21743248 | Msa0723770:CDS | 40.0% | |
| !! | CATCAGGTTGGTCATTTACT+AGG | + | chr5_1:21743266-21743285 | Msa0723770:CDS | 40.0% |
| GTTGGTCATTTACTAGGGTT+GGG | + | chr5_1:21743272-21743291 | Msa0723770:CDS | 40.0% | |
| TTGGTCATTTACTAGGGTTG+GGG | + | chr5_1:21743273-21743292 | Msa0723770:CDS | 40.0% | |
| ! | TGATGATTTGCAGAGGATTC+AGG | + | chr5_1:21743367-21743386 | Msa0723770:CDS | 40.0% |
| GAGATTGGAGACATCGTTAG+CGG | + | chr5_1:21742427-21742446 | Msa0723770:intron | 45.0% | |
| GGTGTTCCCGACATAATCAA+TGG | + | chr5_1:21742861-21742880 | Msa0723770:CDS | 45.0% | |
| AAACAGCGTCGTTTAAACCG+TGG | + | chr5_1:21742916-21742935 | Msa0723770:CDS | 45.0% | |
| TTCAAGACGCGTTTAACCGT+TGG | + | chr5_1:21743018-21743037 | Msa0723770:CDS | 45.0% | |
| GTTGGATGGAAAAGGTGGAA+CGG | + | chr5_1:21743115-21743134 | Msa0723770:CDS | 45.0% | |
| GGAATCTGTTGTGATGCATC+AGG | + | chr5_1:21743250-21743269 | Msa0723770:CDS | 45.0% | |
| TCTGTTGTGATGCATCAGGT+TGG | + | chr5_1:21743254-21743273 | Msa0723770:CDS | 45.0% | |
| ! | GGTTGGTCATTTACTAGGGT+TGG | + | chr5_1:21743271-21743290 | Msa0723770:CDS | 45.0% |
| GAGATTGGAGACATCGTTAG+CGG | + | chr5_1:21742427-21742446 | Msa0723770:intron | 45.0% | |
| GGTGTTCCCGACATAATCAA+TGG | + | chr5_1:21742861-21742880 | Msa0723770:CDS | 45.0% | |
| AAACAGCGTCGTTTAAACCG+TGG | + | chr5_1:21742916-21742935 | Msa0723770:CDS | 45.0% | |
| TTCAAGACGCGTTTAACCGT+TGG | + | chr5_1:21743018-21743037 | Msa0723770:CDS | 45.0% | |
| GTTGGATGGAAAAGGTGGAA+CGG | + | chr5_1:21743115-21743134 | Msa0723770:CDS | 45.0% | |
| GGAATCTGTTGTGATGCATC+AGG | + | chr5_1:21743250-21743269 | Msa0723770:CDS | 45.0% | |
| TCTGTTGTGATGCATCAGGT+TGG | + | chr5_1:21743254-21743273 | Msa0723770:CDS | 45.0% | |
| ! | GGTTGGTCATTTACTAGGGT+TGG | + | chr5_1:21743271-21743290 | Msa0723770:CDS | 45.0% |
| GATGGAAAAGGTGGAACGGT+TGG | + | chr5_1:21743119-21743138 | Msa0723770:CDS | 50.0% | |
| ! | GTTGGGGCATTCTTCTGTTG+AGG | + | chr5_1:21743289-21743308 | Msa0723770:CDS | 50.0% |
| GATGGAAAAGGTGGAACGGT+TGG | + | chr5_1:21743119-21743138 | Msa0723770:CDS | 50.0% | |
| ! | GTTGGGGCATTCTTCTGTTG+AGG | + | chr5_1:21743289-21743308 | Msa0723770:CDS | 50.0% |
| ATGTCGGGAACACCACAACG+TGG | - | chr5_1:21742855-21742874 | None:intergenic | 55.0% | |
| CAGCGTCGTTTAAACCGTGG+TGG | + | chr5_1:21742919-21742938 | Msa0723770:CDS | 55.0% | |
| CGTCGTTTAAACCGTGGTGG+AGG | + | chr5_1:21742922-21742941 | Msa0723770:CDS | 55.0% | |
| ! | TAAACCGTGGTGGAGGAACG+TGG | + | chr5_1:21742929-21742948 | Msa0723770:CDS | 55.0% |
| TTCTCCACGTTCCTCCACCA+CGG | - | chr5_1:21742936-21742955 | None:intergenic | 55.0% | |
| GGAAAAGGTGGAACGGTTGG+AGG | + | chr5_1:21743122-21743141 | Msa0723770:CDS | 55.0% | |
| ! | GGGGCATTCTTCTGTTGAGG+AGG | + | chr5_1:21743292-21743311 | Msa0723770:CDS | 55.0% |
| ATGTCGGGAACACCACAACG+TGG | - | chr5_1:21742855-21742874 | None:intergenic | 55.0% | |
| CAGCGTCGTTTAAACCGTGG+TGG | + | chr5_1:21742919-21742938 | Msa0723770:CDS | 55.0% | |
| CGTCGTTTAAACCGTGGTGG+AGG | + | chr5_1:21742922-21742941 | Msa0723770:CDS | 55.0% | |
| ! | TAAACCGTGGTGGAGGAACG+TGG | + | chr5_1:21742929-21742948 | Msa0723770:CDS | 55.0% |
| TTCTCCACGTTCCTCCACCA+CGG | - | chr5_1:21742936-21742955 | None:intergenic | 55.0% | |
| GGAAAAGGTGGAACGGTTGG+AGG | + | chr5_1:21743122-21743141 | Msa0723770:CDS | 55.0% | |
| ! | GGGGCATTCTTCTGTTGAGG+AGG | + | chr5_1:21743292-21743311 | Msa0723770:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 21742223 | 21743412 | 21742223 | ID=Msa0723770;Name=Msa0723770 |
| chr5_1 | mRNA | 21742223 | 21743412 | 21742223 | ID=Msa0723770-mRNA-1;Parent=Msa0723770;Name=Msa0723770-mRNA-1;_AED=0.10;_eAED=0.10;_QI=0|0|0|1|0|0|2|0|259 |
| chr5_1 | exon | 21742223 | 21742441 | 21742223 | ID=Msa0723770-mRNA-1:exon:8238;Parent=Msa0723770-mRNA-1 |
| chr5_1 | exon | 21742852 | 21743412 | 21742852 | ID=Msa0723770-mRNA-1:exon:8239;Parent=Msa0723770-mRNA-1 |
| chr5_1 | CDS | 21742223 | 21742441 | 21742223 | ID=Msa0723770-mRNA-1:cds;Parent=Msa0723770-mRNA-1 |
| chr5_1 | CDS | 21742852 | 21743412 | 21742852 | ID=Msa0723770-mRNA-1:cds;Parent=Msa0723770-mRNA-1 |
| Gene Sequence |
| Protein sequence |
