Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804690 | XP_003613080.1 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 1.96e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804690 | sp|Q8LDD3|CUT1D_ARATH | 41.919 | 198 | 93 | 3 | 1 | 183 | 1 | 191 | 1.75e-43 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804690 | G7JXQ3 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 9.36e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0027250 | Msa0804690 | 0.813549 | 2.420180e-51 | -8.615850e-47 |
| Msa0051960 | Msa0804690 | -0.810984 | 8.782720e-51 | -8.615850e-47 |
| Msa0075160 | Msa0804690 | 0.812528 | 4.051287e-51 | -8.615850e-47 |
| Msa0101960 | Msa0804690 | -0.819179 | 1.330711e-52 | -8.615850e-47 |
| Msa0645800 | Msa0804690 | 0.856744 | 2.615444e-62 | -8.615850e-47 |
| Msa0685110 | Msa0804690 | 0.850065 | 2.160883e-60 | -8.615850e-47 |
| Msa0685500 | Msa0804690 | 0.856097 | 4.050539e-62 | -8.615850e-47 |
| Msa0691320 | Msa0804690 | 0.817820 | 2.704977e-52 | -8.615850e-47 |
| Msa0719900 | Msa0804690 | 0.963830 | 1.442395e-122 | -8.615850e-47 |
| Msa0804690 | Msa1030420 | 0.808665 | 2.770637e-50 | -8.615850e-47 |
| Msa0804690 | Msa1163190 | 0.843924 | 1.038511e-58 | -8.615850e-47 |
| Msa0804690 | Msa1164720 | 0.836840 | 7.391950e-57 | -8.615850e-47 |
| Msa0804690 | Msa1173800 | -0.806296 | 8.810842e-50 | -8.615850e-47 |
| Msa0138680 | Msa0804690 | 0.833885 | 4.123515e-56 | -8.615850e-47 |
| Msa0167500 | Msa0804690 | 0.805754 | 1.145662e-49 | -8.615850e-47 |
| Msa0168410 | Msa0804690 | 0.851990 | 6.191005e-61 | -8.615850e-47 |
| Msa0172380 | Msa0804690 | -0.811027 | 8.594983e-51 | -8.615850e-47 |
| Msa0542060 | Msa0804690 | 0.844255 | 8.466966e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804690 | MtrunA17_Chr5g0412411 | 95.652 | 184 | 6 | 1 | 1 | 182 | 1 | 184 | 1.54e-128 | 358 |
| Msa0804690 | MtrunA17_Chr7g0275281 | 52.128 | 94 | 44 | 1 | 90 | 183 | 69 | 161 | 2.73e-27 | 100 |
| Msa0804690 | MtrunA17_Chr4g0004811 | 45.946 | 74 | 40 | 0 | 108 | 181 | 72 | 145 | 6.52e-17 | 73.6 |
| Msa0804690 | MtrunA17_Chr7g0276381 | 35.897 | 117 | 69 | 3 | 67 | 181 | 65 | 177 | 5.87e-15 | 69.3 |
| Msa0804690 | MtrunA17_Chr8g0345861 | 40.000 | 65 | 39 | 0 | 118 | 182 | 105 | 169 | 3.63e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0804690 | AT4G38100.1 | 41.919 | 198 | 93 | 3 | 1 | 183 | 1 | 191 | 1.78e-44 | 146 |
| Msa0804690 | AT4G38100.2 | 50.360 | 139 | 62 | 1 | 45 | 183 | 20 | 151 | 1.30e-41 | 137 |
| Msa0804690 | AT4G01150.1 | 57.447 | 94 | 39 | 1 | 90 | 183 | 72 | 164 | 5.17e-30 | 108 |
| Msa0804690 | AT1G52220.2 | 45.946 | 74 | 40 | 0 | 108 | 181 | 81 | 154 | 1.45e-15 | 70.9 |
| Msa0804690 | AT1G52220.1 | 45.946 | 74 | 40 | 0 | 108 | 181 | 82 | 155 | 1.54e-15 | 70.9 |
| Msa0804690 | AT2G46820.2 | 37.179 | 78 | 49 | 0 | 106 | 183 | 97 | 174 | 3.03e-15 | 70.5 |
| Msa0804690 | AT2G46820.1 | 37.179 | 78 | 49 | 0 | 106 | 183 | 97 | 174 | 3.03e-15 | 70.5 |
| Msa0804690 | AT1G52220.3 | 52.000 | 50 | 24 | 0 | 132 | 181 | 77 | 126 | 6.75e-12 | 60.5 |
Find 70 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTGCTCTGTTACATATT+TGG | 0.127385 | 5_3:-20645905 | Msa0804690:three_prime_UTR |
| ACCACTTCTCTTGCTGTTTA+TGG | 0.133297 | 5_3:-20646434 | Msa0804690:CDS |
| TCGGAGGAAAAGAGGGTTTA+TGG | 0.185997 | 5_3:+20650828 | None:intergenic |
| CCATCAGGCAACACTTCCTT+TGG | 0.237654 | 5_3:+20649937 | None:intergenic |
| AGCGAAGGAATTGGGAAGTT+TGG | 0.246871 | 5_3:+20650856 | None:intergenic |
| CTGTTGCCCTTACATTTCTA+AGG | 0.263690 | 5_3:+20650073 | None:intergenic |
| CTAGCCCTTTATATACAAAA+TGG | 0.285092 | 5_3:+20650959 | None:intergenic |
| TAGGGCTTGGATATTCATTA+TGG | 0.318225 | 5_3:-20646231 | Msa0804690:CDS |
| CCCTACAACTTCGAACAGTT+TGG | 0.332383 | 5_3:+20646249 | None:intergenic |
| GAACTAAAGGAACAAGTTCT+TGG | 0.337121 | 5_3:-20646063 | Msa0804690:CDS |
| GTTACATTTCGTCTAGTTAA+GGG | 0.339090 | 5_3:-20645965 | Msa0804690:three_prime_UTR |
| CTTCCTTCACAATTCACAAA+TGG | 0.354354 | 5_3:-20650909 | Msa0804690:exon |
| AGTTACATTTCGTCTAGTTA+AGG | 0.363304 | 5_3:-20645966 | Msa0804690:three_prime_UTR |
| TGGTGAAAAGCGAAGGAATT+GGG | 0.370089 | 5_3:+20650848 | None:intergenic |
| TTCCTTCACAATTCACAAAT+GGG | 0.396725 | 5_3:-20650908 | Msa0804690:exon |
| TGGTTAACTTCGGCCGTTGT+TGG | 0.408848 | 5_3:-20646389 | Msa0804690:CDS |
| TCTCTTGCTGTTTATGGTGG+TGG | 0.413364 | 5_3:-20646428 | Msa0804690:CDS |
| CTGTTCGAAGTTGTAGGGCT+TGG | 0.415379 | 5_3:-20646244 | Msa0804690:CDS |
| CCTACAACTTCGAACAGTTT+GGG | 0.418578 | 5_3:+20646250 | None:intergenic |
| CATCAGGCAACACTTCCTTT+GGG | 0.427132 | 5_3:+20649938 | None:intergenic |
| AACGGCAGGCCTTCTCCATC+AGG | 0.429232 | 5_3:+20649922 | None:intergenic |
| CGAGATAAGAGTGCATGTTT+CGG | 0.450142 | 5_3:+20650809 | None:intergenic |
| ATGGTGAAAAGCGAAGGAAT+TGG | 0.452245 | 5_3:+20650847 | None:intergenic |
| AGTTAACCACAGGGCCACTA+TGG | 0.453404 | 5_3:+20646403 | None:intergenic |
| CCCAAACTGTTCGAAGTTGT+AGG | 0.459632 | 5_3:-20646250 | Msa0804690:CDS |
| CCAAACTGTTCGAAGTTGTA+GGG | 0.475613 | 5_3:-20646249 | Msa0804690:CDS |
| TGATGGTGTGATAACTTTAG+AGG | 0.485413 | 5_3:-20650001 | Msa0804690:CDS |
| TGCATGTTTCGGAGGAAAAG+AGG | 0.495492 | 5_3:+20650820 | None:intergenic |
| GCAGAGGAAAGGAGCTGTGA+GGG | 0.501063 | 5_3:+20645921 | None:intergenic |
| GCAGAGAAACAGAGAGGAGC+TGG | 0.506142 | 5_3:-20646100 | Msa0804690:intron |
| GAGGAGAATTCAAGCGGTGC+TGG | 0.507621 | 5_3:-20650045 | Msa0804690:CDS |
| GAGGTGGTGAGTTGAAGTGA+AGG | 0.521316 | 5_3:+20650931 | None:intergenic |
| CAATAAAATAGAGGAACTAA+AGG | 0.526055 | 5_3:-20646076 | Msa0804690:CDS |
| CAATGAAACTGTGGAGAATG+AGG | 0.527662 | 5_3:-20649962 | Msa0804690:CDS |
| GCAACACACGATAAAAGAAA+AGG | 0.539181 | 5_3:+20645856 | None:intergenic |
| AGGAAAGGAGCTGTGAGGGA+TGG | 0.539206 | 5_3:+20645925 | None:intergenic |
| CCAAAGGAAGTGTTGCCTGA+TGG | 0.551553 | 5_3:-20649937 | Msa0804690:CDS |
| GGAGCTGGCCAATAAAATAG+AGG | 0.555400 | 5_3:-20646085 | Msa0804690:CDS |
| TATCGAGCAAATCCAACGGC+AGG | 0.560415 | 5_3:+20649908 | None:intergenic |
| ACTTCTCTTGCTGTTTATGG+TGG | 0.569238 | 5_3:-20646431 | Msa0804690:CDS |
| AGTGGCCCTGTGGTTAACTT+CGG | 0.569289 | 5_3:-20646399 | Msa0804690:CDS |
| GGAAGTTTGGAAAGAGTGAG+AGG | 0.573274 | 5_3:+20650869 | None:intergenic |
| AGGTGGTGAGTTGAAGTGAA+GGG | 0.582287 | 5_3:+20650932 | None:intergenic |
| GCATGTTTCGGAGGAAAAGA+GGG | 0.584713 | 5_3:+20650821 | None:intergenic |
| TATGTAACAGAGCAGAGGAA+AGG | 0.585404 | 5_3:+20645910 | None:intergenic |
| ACCATAAACAGCAAGAGAAG+TGG | 0.590884 | 5_3:+20646433 | None:intergenic |
| TGCTATTGATTCTATCCCAG+TGG | 0.595990 | 5_3:-20646366 | Msa0804690:intron |
| GATAAGAGTGCATGTTTCGG+AGG | 0.597339 | 5_3:+20650812 | None:intergenic |
| CAACGGCCGAAGTTAACCAC+AGG | 0.598421 | 5_3:+20646393 | None:intergenic |
| TCCTTCACAATTCACAAATG+GGG | 0.599223 | 5_3:-20650907 | Msa0804690:exon |
| TGATGGAGAAGGCCTGCCGT+TGG | 0.606276 | 5_3:-20649920 | Msa0804690:CDS |
| GCCCCATTTGTGAATTGTGA+AGG | 0.606694 | 5_3:+20650906 | None:intergenic |
| GGGTTTATGGTGAAAAGCGA+AGG | 0.612257 | 5_3:+20650841 | None:intergenic |
| TTATGGTGGTGGTGCCATAG+TGG | 0.612837 | 5_3:-20646417 | Msa0804690:CDS |
| AGCACCGCTTGAATTCTCCT+CGG | 0.618327 | 5_3:+20650047 | None:intergenic |
| TGTAAGGGCAACAGCATCCG+AGG | 0.621783 | 5_3:-20650064 | Msa0804690:CDS |
| CCAAATATGTAACAGAGCAG+AGG | 0.627879 | 5_3:+20645905 | None:intergenic |
| TGTGGAGAATGAGGACCCAA+AGG | 0.634542 | 5_3:-20649953 | Msa0804690:CDS |
| AGCAGAGGAAAGGAGCTGTG+AGG | 0.635491 | 5_3:+20645920 | None:intergenic |
| GAAGTGTTGCCTGATGGAGA+AGG | 0.638111 | 5_3:-20649931 | Msa0804690:CDS |
| ATACCTTGAAAAGCAAGTAA+CGG | 0.655475 | 5_3:+20646200 | None:intergenic |
| AAATGGATACAATGAAACTG+TGG | 0.659004 | 5_3:-20649971 | Msa0804690:CDS |
| AGAATCAATAGCACCAACAA+CGG | 0.660305 | 5_3:+20646376 | None:intergenic |
| AGCTTATCGAGCAAATCCAA+CGG | 0.662252 | 5_3:+20649904 | None:intergenic |
| TAAACTGCAGAGAAACAGAG+AGG | 0.668243 | 5_3:-20646106 | Msa0804690:intron |
| GTGAATTGTGAAGGAAGAGG+TGG | 0.672859 | 5_3:+20650915 | None:intergenic |
| TTTGTGAATTGTGAAGGAAG+AGG | 0.677503 | 5_3:+20650912 | None:intergenic |
| GTGGTGCCATAGTGGCCCTG+TGG | 0.698214 | 5_3:-20646409 | Msa0804690:CDS |
| GCATCCGAGGAGAATTCAAG+CGG | 0.703423 | 5_3:-20650051 | Msa0804690:CDS |
| AACGGCCGAAGTTAACCACA+GGG | 0.725785 | 5_3:+20646394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAAAATTTCATTTTTAAT+TGG | - | chr5_3:20646493-20646512 | Msa0804690:intron | 10.0% |
| !!! | TTTTTAATTGGATAAAATTA+AGG | - | chr5_3:20646505-20646524 | Msa0804690:intron | 10.0% |
| !!! | TTTTAATTGGATAAAATTAA+GGG | - | chr5_3:20646506-20646525 | Msa0804690:intron | 10.0% |
| !!! | TTTTAAAATAAAGTCAATTT+AGG | + | chr5_3:20648571-20648590 | None:intergenic | 10.0% |
| !!! | ATATAATAAAATTTAGAGTT+TGG | + | chr5_3:20649476-20649495 | None:intergenic | 10.0% |
| !! | ATAATATAGCATCTTTAAAT+TGG | - | chr5_3:20647318-20647337 | Msa0804690:intron | 15.0% |
| !! | TACAAAACAATCAAAAAAAA+TGG | + | chr5_3:20647952-20647971 | None:intergenic | 15.0% |
| !!! | ACAAAATTTAATTTAGGTTT+TGG | - | chr5_3:20648914-20648933 | Msa0804690:intron | 15.0% |
| !! | AAATACAAACAAATCTAAAA+TGG | + | chr5_3:20649372-20649391 | None:intergenic | 15.0% |
| !!! | TTTTATTATATTCATGTGTT+TGG | - | chr5_3:20649485-20649504 | Msa0804690:intron | 15.0% |
| !!! | GAGTCAAAAATATATTTTTT+GGG | + | chr5_3:20650051-20650070 | None:intergenic | 15.0% |
| !!! | AATTTTTATTTGATAAGGTG+TGG | - | chr5_3:20646212-20646231 | Msa0804690:CDS | 20.0% |
| !!! | TTTTAACTTCATAGAAATGA+AGG | - | chr5_3:20646319-20646338 | Msa0804690:intron | 20.0% |
| !!! | TTTAACTTCATAGAAATGAA+GGG | - | chr5_3:20646320-20646339 | Msa0804690:intron | 20.0% |
| !!! | AATCTTGTTAATTTAGCTTT+TGG | - | chr5_3:20646438-20646457 | Msa0804690:CDS | 20.0% |
| !! | AATAAAAAATTCATGTGCAA+TGG | - | chr5_3:20646566-20646585 | Msa0804690:intron | 20.0% |
| !!! | TTTTAACTGCTTAAAAATGT+AGG | - | chr5_3:20646679-20646698 | Msa0804690:intron | 20.0% |
| !! | TTTAACTGCTTAAAAATGTA+GGG | - | chr5_3:20646680-20646699 | Msa0804690:intron | 20.0% |
| !!! | TTATTTCCACTGTTTTAAAT+TGG | - | chr5_3:20647511-20647530 | Msa0804690:intron | 20.0% |
| !!! | TGTATTAATTTTCATGTGTT+TGG | - | chr5_3:20647654-20647673 | Msa0804690:intron | 20.0% |
| !!! | TTTATTTTTGTGTGTTTGAT+TGG | - | chr5_3:20648090-20648109 | Msa0804690:intron | 20.0% |
| !! | TATATGGTTGAAATTTGAAT+TGG | + | chr5_3:20648465-20648484 | None:intergenic | 20.0% |
| !!! | AATAAAGTCAATTTAGGTTT+TGG | + | chr5_3:20648565-20648584 | None:intergenic | 20.0% |
| !!! | AATAAAGTGAATTTAGGTTT+TGG | + | chr5_3:20648625-20648644 | None:intergenic | 20.0% |
| !! | GTATACAATAAAGTGAATTT+AGG | + | chr5_3:20648631-20648650 | None:intergenic | 20.0% |
| !!! | GTACAGACAAAATTTAATTT+AGG | - | chr5_3:20648908-20648927 | Msa0804690:intron | 20.0% |
| !!! | TTTGTTTTTGTTTTTGAAGA+AGG | - | chr5_3:20649002-20649021 | Msa0804690:intron | 20.0% |
| !! | AACAGATTACAAATACTAAA+AGG | + | chr5_3:20649283-20649302 | None:intergenic | 20.0% |
| !!! | CATTAAATTTTTCATGTGTT+TGG | - | chr5_3:20649558-20649577 | Msa0804690:intron | 20.0% |
| !!! | TTTATTCAATTTTGTGTGTT+TGG | - | chr5_3:20649753-20649772 | Msa0804690:intron | 20.0% |
| !!! | AAAAATATATTTTTTGGGCT+CGG | + | chr5_3:20650046-20650065 | None:intergenic | 20.0% |
| !!! | GGAGTCAAAAATATATTTTT+TGG | + | chr5_3:20650052-20650071 | None:intergenic | 20.0% |
| !! | ACTTAATTCACAATCATATT+AGG | + | chr5_3:20650164-20650183 | None:intergenic | 20.0% |
| !!! | CATTTATGTTTGGTTATTTT+GGG | + | chr5_3:20650276-20650295 | None:intergenic | 20.0% |
| !!! | ACATTTATGTTTGGTTATTT+TGG | + | chr5_3:20650277-20650296 | None:intergenic | 20.0% |
| !! | AATAACAAATATATACCACT+GGG | + | chr5_3:20650477-20650496 | None:intergenic | 20.0% |
| !! | AAATAACAAATATATACCAC+TGG | + | chr5_3:20650478-20650497 | None:intergenic | 20.0% |
| !!! | TAATAACAAAAGTTGGTTTT+TGG | + | chr5_3:20650520-20650539 | None:intergenic | 20.0% |
| ! | TTCAATCTTTACCAAAAACT+AGG | - | chr5_3:20646046-20646065 | Msa0804690:exon | 25.0% |
| ! | TCAATCTTTACCAAAAACTA+GGG | - | chr5_3:20646047-20646066 | Msa0804690:exon | 25.0% |
| ! | AACAAGAAAAACAAGCAAAA+GGG | + | chr5_3:20646134-20646153 | None:intergenic | 25.0% |
| !! | CTTGTTAATTAAGCTTTTTG+AGG | - | chr5_3:20646262-20646281 | Msa0804690:intron | 25.0% |
| ! | TATAAAATATTCATGTGCTG+TGG | - | chr5_3:20646384-20646403 | Msa0804690:CDS | 25.0% |
| !! | AATTAAGCTTTTGTAGCTTA+TGG | - | chr5_3:20646628-20646647 | Msa0804690:intron | 25.0% |
| !! | ATTAAGCTTTTGTAGCTTAT+GGG | - | chr5_3:20646629-20646648 | Msa0804690:intron | 25.0% |
| !!! | TTTGCGTTTTATGTTATTTC+AGG | - | chr5_3:20646720-20646739 | Msa0804690:intron | 25.0% |
| !! | AGTTTTCCTTAGAAATGTAA+GGG | - | chr5_3:20646746-20646765 | Msa0804690:intron | 25.0% |
| ! | TCAGATTAGGAATACTAAAA+GGG | + | chr5_3:20646971-20646990 | None:intergenic | 25.0% |
| ! | ATGATACTACAGTTTATTGA+TGG | - | chr5_3:20647118-20647137 | Msa0804690:intron | 25.0% |
| !! | AAATTGGTTTATATGTGACA+TGG | - | chr5_3:20647334-20647353 | Msa0804690:intron | 25.0% |
| !! | TACAAACCAATTTAAAACAG+TGG | + | chr5_3:20647520-20647539 | None:intergenic | 25.0% |
| !! | ATTAATTTTCATGTGTTTGG+TGG | - | chr5_3:20647657-20647676 | Msa0804690:intron | 25.0% |
| !! | TTTGAATCTTGATGATACTT+CGG | - | chr5_3:20647784-20647803 | Msa0804690:intron | 25.0% |
| ! | AAATAGTCAAAAGACAAACA+CGG | + | chr5_3:20648129-20648148 | None:intergenic | 25.0% |
| ! | ATAGCATCAATAAATGTATG+CGG | - | chr5_3:20648407-20648426 | Msa0804690:intron | 25.0% |
| ! | CAACCATATAATTAATCCAA+TGG | - | chr5_3:20648475-20648494 | Msa0804690:intron | 25.0% |
| ! | CAACCATTGGATTAATTATA+TGG | + | chr5_3:20648481-20648500 | None:intergenic | 25.0% |
| ! | ATTATCAATCTTTCAACCAT+TGG | + | chr5_3:20648494-20648513 | None:intergenic | 25.0% |
| !!! | AAATGTCTGAGATTTTGAAT+AGG | - | chr5_3:20648692-20648711 | Msa0804690:intron | 25.0% |
| ! | CTGAAAGAGAAAAATGATAA+TGG | - | chr5_3:20648837-20648856 | Msa0804690:intron | 25.0% |
| !!! | AGAAAAAACTGATTTGTAGA+GGG | - | chr5_3:20648941-20648960 | Msa0804690:intron | 25.0% |
| ! | AATGTCACATATGAAGAATA+TGG | + | chr5_3:20649161-20649180 | None:intergenic | 25.0% |
| ! | TATTATATTCATGTGTTTGG+TGG | - | chr5_3:20649488-20649507 | Msa0804690:intron | 25.0% |
| !! | ATTTGTATTTCCATGTTTTG+TGG | - | chr5_3:20649632-20649651 | Msa0804690:intron | 25.0% |
| !! | TAAAGTGCTTAATGATACTT+CGG | - | chr5_3:20649688-20649707 | Msa0804690:intron | 25.0% |
| !!! | AAAATATATTTTTTGGGCTC+GGG | + | chr5_3:20650045-20650064 | None:intergenic | 25.0% |
| !! | TGGTTTGTAACATTTATGTT+TGG | + | chr5_3:20650286-20650305 | None:intergenic | 25.0% |
| ! | AAATCATAAATGTTGCAAAC+TGG | + | chr5_3:20650306-20650325 | None:intergenic | 25.0% |
| ! | AGGTTAGTAATAACAAAAGT+TGG | + | chr5_3:20650527-20650546 | None:intergenic | 25.0% |
| !! | GTTATTACTAACCTTTTTGT+CGG | - | chr5_3:20650533-20650552 | Msa0804690:intron | 25.0% |
| !!! | CTTTAGTTCCTCTATTTTAT+TGG | + | chr5_3:20650751-20650770 | None:intergenic | 25.0% |
| ! | CAATAAAATAGAGGAACTAA+AGG | - | chr5_3:20650749-20650768 | Msa0804690:intron | 25.0% |
| TTCCTTCACAATTCACAAAT+GGG | - | chr5_3:20645917-20645936 | Msa0804690:three_prime_UTR | 30.0% | |
| !! | AGAATGAAAACCCTAGTTTT+TGG | + | chr5_3:20646060-20646079 | None:intergenic | 30.0% |
| CAACAAGAAAAACAAGCAAA+AGG | + | chr5_3:20646135-20646154 | None:intergenic | 30.0% | |
| !! | CTTTTGCTTGTTTTTCTTGT+TGG | - | chr5_3:20646133-20646152 | Msa0804690:intron | 30.0% |
| !!! | AATTTAGCTTTTGGAGCAAA+TGG | - | chr5_3:20646447-20646466 | Msa0804690:CDS | 30.0% |
| !!! | ATTTAGCTTTTGGAGCAAAT+GGG | - | chr5_3:20646448-20646467 | Msa0804690:CDS | 30.0% |
| ! | CAGTTTTCCTTAGAAATGTA+AGG | - | chr5_3:20646745-20646764 | Msa0804690:intron | 30.0% |
| TTGTTCAATGAAAAACGTGA+TGG | - | chr5_3:20646807-20646826 | Msa0804690:intron | 30.0% | |
| ! | ACTTTAGAGGCTGATAAAAA+TGG | - | chr5_3:20646837-20646856 | Msa0804690:intron | 30.0% |
| AAATGGATACAATGAAACTG+TGG | - | chr5_3:20646854-20646873 | Msa0804690:intron | 30.0% | |
| TTAGGAATACTAAAAGGGAA+AGG | + | chr5_3:20646966-20646985 | None:intergenic | 30.0% | |
| CTCAGATTAGGAATACTAAA+AGG | + | chr5_3:20646972-20646991 | None:intergenic | 30.0% | |
| TAGAATGCTTTGTGATACTT+CGG | - | chr5_3:20647147-20647166 | Msa0804690:intron | 30.0% | |
| TGTTTGTAGTTATGACTAGT+TGG | - | chr5_3:20647230-20647249 | Msa0804690:intron | 30.0% | |
| TACATATACTGCATAGTACA+GGG | + | chr5_3:20647273-20647292 | None:intergenic | 30.0% | |
| GATGAAACTCAGTTTATTGA+TGG | - | chr5_3:20647560-20647579 | Msa0804690:intron | 30.0% | |
| !!! | GATGAAACTCAGTTTTTTGA+CGG | - | chr5_3:20647755-20647774 | Msa0804690:intron | 30.0% |
| TTAGTTATGACATGTTAGTG+TGG | - | chr5_3:20647882-20647901 | Msa0804690:intron | 30.0% | |
| TTCATCACAGCAAAACAAAA+TGG | + | chr5_3:20647978-20647997 | None:intergenic | 30.0% | |
| GATGAAACTCAGTTTATTGA+TGG | - | chr5_3:20647560-20647579 | Msa0804690:intron | 30.0% | |
| AATAGTCAAAAGACAAACAC+GGG | + | chr5_3:20648128-20648147 | None:intergenic | 30.0% | |
| GATGATACTCAGTTTATTGA+TGG | - | chr5_3:20648183-20648202 | Msa0804690:intron | 30.0% | |
| CCAATACTTTCAAGGAAAAA+TGG | + | chr5_3:20648304-20648323 | None:intergenic | 30.0% | |
| !! | CCATTTTTCCTTGAAAGTAT+TGG | - | chr5_3:20648301-20648320 | Msa0804690:intron | 30.0% |
| !!! | TTTTTCCTTGAAAGTATTGG+TGG | - | chr5_3:20648304-20648323 | Msa0804690:intron | 30.0% |
| ATAACATACAATCACCTACA+GGG | + | chr5_3:20648372-20648391 | None:intergenic | 30.0% | |
| GTTGAAATTTGAATTGGTAG+CGG | + | chr5_3:20648459-20648478 | None:intergenic | 30.0% | |
| TTCAAAATCTCAGACATTTG+CGG | + | chr5_3:20648691-20648710 | None:intergenic | 30.0% | |
| ! | AGATTTTGAATAGGAAGACA+TGG | - | chr5_3:20648701-20648720 | Msa0804690:intron | 30.0% |
| ! | GATTTTGAATAGGAAGACAT+GGG | - | chr5_3:20648702-20648721 | Msa0804690:intron | 30.0% |
| ! | TGGTATATGATAGAGCATTA+TGG | - | chr5_3:20648733-20648752 | Msa0804690:intron | 30.0% |
| !! | TCATTTTTCTCTTTCAGCTT+CGG | + | chr5_3:20648834-20648853 | None:intergenic | 30.0% |
| !! | CAGAAAAAACTGATTTGTAG+AGG | - | chr5_3:20648940-20648959 | Msa0804690:intron | 30.0% |
| !!! | TGATTTGTAGAGGGTTTTTT+TGG | - | chr5_3:20648950-20648969 | Msa0804690:intron | 30.0% |
| !! | ACTGCTTTTATTTCCATTCA+TGG | - | chr5_3:20649191-20649210 | Msa0804690:intron | 30.0% |
| TTCATCATAGCAACAAAACA+TGG | + | chr5_3:20649395-20649414 | None:intergenic | 30.0% | |
| ! | TGTTTATGTTTCCACTGTTT+TGG | - | chr5_3:20649605-20649624 | Msa0804690:intron | 30.0% |
| TACAAATCAATCCAAAACAG+TGG | + | chr5_3:20649619-20649638 | None:intergenic | 30.0% | |
| AATAAAATGTAGAGTTGCTC+AGG | + | chr5_3:20649739-20649758 | None:intergenic | 30.0% | |
| ! | ATTCAATTTTGTGTGTTTGG+TGG | - | chr5_3:20649756-20649775 | Msa0804690:intron | 30.0% |
| ! | TACAAACCAATCTAAAACAG+TGG | + | chr5_3:20649812-20649831 | None:intergenic | 30.0% |
| TAGATTGCTTGATGAAACTT+CGG | - | chr5_3:20649882-20649901 | Msa0804690:intron | 30.0% | |
| !! | TGTTTTCATTTTTGCGCTTT+TGG | - | chr5_3:20649947-20649966 | Msa0804690:CDS | 30.0% |
| TGTATAGCAGTTAACTAAAC+AGG | + | chr5_3:20650238-20650257 | None:intergenic | 30.0% | |
| ATAAGAATGAACCGACAAAA+AGG | + | chr5_3:20650547-20650566 | None:intergenic | 30.0% | |
| ATACCTTGAAAAGCAAGTAA+CGG | + | chr5_3:20650628-20650647 | None:intergenic | 30.0% | |
| AGTTACATTTCGTCTAGTTA+AGG | - | chr5_3:20650859-20650878 | Msa0804690:CDS | 30.0% | |
| GTTACATTTCGTCTAGTTAA+GGG | - | chr5_3:20650860-20650879 | Msa0804690:CDS | 30.0% | |
| TTTGTGAATTGTGAAGGAAG+AGG | + | chr5_3:20645916-20645935 | None:intergenic | 35.0% | |
| CTTCCTTCACAATTCACAAA+TGG | - | chr5_3:20645916-20645935 | Msa0804690:three_prime_UTR | 35.0% | |
| TCCTTCACAATTCACAAATG+GGG | - | chr5_3:20645918-20645937 | Msa0804690:three_prime_UTR | 35.0% | |
| !!! | AATTAAGCTTTTTGAGGCGA+TGG | - | chr5_3:20646268-20646287 | Msa0804690:intron | 35.0% |
| !!! | ATTAAGCTTTTTGAGGCGAT+GGG | - | chr5_3:20646269-20646288 | Msa0804690:intron | 35.0% |
| ACTTCATAGAAATGAAGGGA+AGG | - | chr5_3:20646324-20646343 | Msa0804690:intron | 35.0% | |
| AAAATTCATGTGCAATGGTG+TGG | - | chr5_3:20646571-20646590 | Msa0804690:intron | 35.0% | |
| ! | TGATGGTGTGATAACTTTAG+AGG | - | chr5_3:20646824-20646843 | Msa0804690:intron | 35.0% |
| ATATACACGCTACTCAGATT+AGG | + | chr5_3:20646984-20647003 | None:intergenic | 35.0% | |
| ATCATCATAGCAACTCAACA+TGG | + | chr5_3:20647103-20647122 | None:intergenic | 35.0% | |
| CTACATATACTGCATAGTAC+AGG | + | chr5_3:20647274-20647293 | None:intergenic | 35.0% | |
| CTGTACTATGCAGTATATGT+AGG | - | chr5_3:20647272-20647291 | Msa0804690:intron | 35.0% | |
| ATGCAGTATATGTAGGTGAT+TGG | - | chr5_3:20647279-20647298 | Msa0804690:intron | 35.0% | |
| ! | TTGAGTGCTTGATGATACTT+CGG | - | chr5_3:20647589-20647608 | Msa0804690:intron | 35.0% |
| AATACAATGTAGAGTTGCTC+AGG | + | chr5_3:20647640-20647659 | None:intergenic | 35.0% | |
| !! | GTCTTTTGACTGTTTTGCAT+TGG | - | chr5_3:20647706-20647725 | Msa0804690:intron | 35.0% |
| ! | TTGAGTGCTTGATGATACTT+CGG | - | chr5_3:20647589-20647608 | Msa0804690:intron | 35.0% |
| ATCATCATAGCAACACAACA+TGG | + | chr5_3:20648169-20648188 | None:intergenic | 35.0% | |
| ! | TAGAGTGCTTGATGATACTT+CGG | - | chr5_3:20648212-20648231 | Msa0804690:intron | 35.0% |
| TAATCAATGAAGAGTTGCTC+AGG | + | chr5_3:20648263-20648282 | None:intergenic | 35.0% | |
| CATAACCACCAATACTTTCA+AGG | + | chr5_3:20648312-20648331 | None:intergenic | 35.0% | |
| CATAACATACAATCACCTAC+AGG | + | chr5_3:20648373-20648392 | None:intergenic | 35.0% | |
| AATCACTACTGCTAAGTTGT+CGG | - | chr5_3:20648658-20648677 | Msa0804690:intron | 35.0% | |
| GAAGTTGAGACAATATTCTG+TGG | - | chr5_3:20649128-20649147 | Msa0804690:intron | 35.0% | |
| TATTTCCATTCATGGAGAGA+AGG | - | chr5_3:20649199-20649218 | Msa0804690:intron | 35.0% | |
| ! | AGGTTCAGTGTAATTTTTGC+TGG | - | chr5_3:20647393-20647412 | Msa0804690:intron | 35.0% |
| GGATGATAAGCTTAATGCAA+AGG | - | chr5_3:20649240-20649259 | Msa0804690:intron | 35.0% | |
| CAAACTCAGAATTACTACAC+TGG | + | chr5_3:20649320-20649339 | None:intergenic | 35.0% | |
| !! | TTCATGTGTTTGGTGTATTC+AGG | - | chr5_3:20649568-20649587 | Msa0804690:intron | 35.0% |
| TTCATCATAGCCACAAAACA+TGG | + | chr5_3:20649645-20649664 | None:intergenic | 35.0% | |
| GATGAAACTCAGTTTCTTGA+CGG | - | chr5_3:20649659-20649678 | Msa0804690:intron | 35.0% | |
| !! | GTCTTTCCACTGTTTTAGAT+TGG | - | chr5_3:20649803-20649822 | Msa0804690:intron | 35.0% |
| GATGAAACTCAGTGTATTGA+TGG | - | chr5_3:20649853-20649872 | Msa0804690:intron | 35.0% | |
| AAAACAATGTAGAGTTGCTC+AGG | + | chr5_3:20649933-20649952 | None:intergenic | 35.0% | |
| ATGCTATCTGTCTCAAACTT+TGG | - | chr5_3:20650080-20650099 | Msa0804690:CDS | 35.0% | |
| AAGAACATCAAACGAACACA+GGG | + | chr5_3:20650107-20650126 | None:intergenic | 35.0% | |
| AGAATCAATAGCACCAACAA+CGG | + | chr5_3:20650452-20650471 | None:intergenic | 35.0% | |
| TAGGGCTTGGATATTCATTA+TGG | - | chr5_3:20650594-20650613 | Msa0804690:intron | 35.0% | |
| !! | TTACCGTTACTTGCTTTTCA+AGG | - | chr5_3:20650622-20650641 | Msa0804690:intron | 35.0% |
| CATATACCATAACCGACATT+AGG | + | chr5_3:20650654-20650673 | None:intergenic | 35.0% | |
| ATATGCTGATATGTGCATGT+TGG | - | chr5_3:20650669-20650688 | Msa0804690:intron | 35.0% | |
| GAACTAAAGGAACAAGTTCT+TGG | - | chr5_3:20650762-20650781 | Msa0804690:intron | 35.0% | |
| TGGTGAAAAGCGAAGGAATT+GGG | + | chr5_3:20645980-20645999 | None:intergenic | 40.0% | |
| ATGGTGAAAAGCGAAGGAAT+TGG | + | chr5_3:20645981-20646000 | None:intergenic | 40.0% | |
| ! | CGAGATAAGAGTGCATGTTT+CGG | + | chr5_3:20646019-20646038 | None:intergenic | 40.0% |
| AATATTCATGTGCTGTGGTG+TGG | - | chr5_3:20646389-20646408 | Msa0804690:CDS | 40.0% | |
| CTGTTGCCCTTACATTTCTA+AGG | + | chr5_3:20646755-20646774 | None:intergenic | 40.0% | |
| CAATGAAACTGTGGAGAATG+AGG | - | chr5_3:20646863-20646882 | Msa0804690:intron | 40.0% | |
| AGCTTATCGAGCAAATCCAA+CGG | + | chr5_3:20646924-20646943 | None:intergenic | 40.0% | |
| ! | CGTGTATATGATGATGCATG+TGG | - | chr5_3:20646995-20647014 | Msa0804690:intron | 40.0% |
| ACTATCACTGTCACTCAACA+TGG | + | chr5_3:20647042-20647061 | None:intergenic | 40.0% | |
| CACACAATACACACACGAAA+AGG | + | chr5_3:20647457-20647476 | None:intergenic | 40.0% | |
| TCGTGTGTGTATTGTGTGTT+TGG | - | chr5_3:20647459-20647478 | Msa0804690:intron | 40.0% | |
| TGTGTGTATTGTGTGTTTGG+TGG | - | chr5_3:20647462-20647481 | Msa0804690:intron | 40.0% | |
| TTCATCATAGCAACACGACA+TGG | + | chr5_3:20647546-20647565 | None:intergenic | 40.0% | |
| TTCATCATAGCAACACAGCA+TGG | + | chr5_3:20647741-20647760 | None:intergenic | 40.0% | |
| !! | GAAATTTGAATTGGTAGCGG+TGG | + | chr5_3:20648456-20648475 | None:intergenic | 40.0% |
| GGAAGACATGGGTAGAAATA+TGG | - | chr5_3:20648713-20648732 | Msa0804690:intron | 40.0% | |
| GCATTATGGAGTCGTTTGTT+AGG | - | chr5_3:20648747-20648766 | Msa0804690:intron | 40.0% | |
| !! | ACTGAGCATGATTTGCTATG+TGG | - | chr5_3:20648864-20648883 | Msa0804690:intron | 40.0% |
| TGAGACAATATTCTGTGGAG+AGG | - | chr5_3:20649133-20649152 | Msa0804690:intron | 40.0% | |
| GAGACAATATTCTGTGGAGA+GGG | - | chr5_3:20649134-20649153 | Msa0804690:intron | 40.0% | |
| !! | TTCATGTGTTTGGTGGATTC+AGG | - | chr5_3:20649495-20649514 | Msa0804690:intron | 40.0% |
| TCATCATAGCGAACACAACA+TGG | + | chr5_3:20649838-20649857 | None:intergenic | 40.0% | |
| !!! | TATATTTTTTGGGCTCGGGA+AGG | + | chr5_3:20650041-20650060 | None:intergenic | 40.0% |
| GAAGAACATCAAACGAACAC+AGG | + | chr5_3:20650108-20650127 | None:intergenic | 40.0% | |
| AACTGCTATACAGTGCACTT+TGG | - | chr5_3:20650246-20650265 | Msa0804690:intron | 40.0% | |
| !! | ACCACTTCTCTTGCTGTTTA+TGG | - | chr5_3:20650391-20650410 | Msa0804690:intron | 40.0% |
| ACCATAAACAGCAAGAGAAG+TGG | + | chr5_3:20650395-20650414 | None:intergenic | 40.0% | |
| !! | ACTTCTCTTGCTGTTTATGG+TGG | - | chr5_3:20650394-20650413 | Msa0804690:intron | 40.0% |
| !! | TGCTATTGATTCTATCCCAG+TGG | - | chr5_3:20650459-20650478 | Msa0804690:intron | 40.0% |
| CCTACAACTTCGAACAGTTT+GGG | + | chr5_3:20650578-20650597 | None:intergenic | 40.0% | |
| CCAAACTGTTCGAAGTTGTA+GGG | - | chr5_3:20650576-20650595 | Msa0804690:intron | 40.0% | |
| TCAAGGTATGTGCCTAATGT+CGG | - | chr5_3:20650639-20650658 | Msa0804690:intron | 40.0% | |
| ! | TATGTGCCTAATGTCGGTTA+TGG | - | chr5_3:20650645-20650664 | Msa0804690:intron | 40.0% |
| TAAACTGCAGAGAAACAGAG+AGG | - | chr5_3:20650719-20650738 | Msa0804690:intron | 40.0% | |
| TATGTAACAGAGCAGAGGAA+AGG | + | chr5_3:20650918-20650937 | None:intergenic | 40.0% | |
| CCAAATATGTAACAGAGCAG+AGG | + | chr5_3:20650923-20650942 | None:intergenic | 40.0% | |
| CCTCTGCTCTGTTACATATT+TGG | - | chr5_3:20650920-20650939 | Msa0804690:five_prime_UTR | 40.0% | |
| ! | AGGTGGTGAGTTGAAGTGAA+GGG | + | chr5_3:20645896-20645915 | None:intergenic | 45.0% |
| GTGAATTGTGAAGGAAGAGG+TGG | + | chr5_3:20645913-20645932 | None:intergenic | 45.0% | |
| GCCCCATTTGTGAATTGTGA+AGG | + | chr5_3:20645922-20645941 | None:intergenic | 45.0% | |
| GGAAGTTTGGAAAGAGTGAG+AGG | + | chr5_3:20645959-20645978 | None:intergenic | 45.0% | |
| AGCGAAGGAATTGGGAAGTT+TGG | + | chr5_3:20645972-20645991 | None:intergenic | 45.0% | |
| GGGTTTATGGTGAAAAGCGA+AGG | + | chr5_3:20645987-20646006 | None:intergenic | 45.0% | |
| TCGGAGGAAAAGAGGGTTTA+TGG | + | chr5_3:20646000-20646019 | None:intergenic | 45.0% | |
| GCATGTTTCGGAGGAAAAGA+GGG | + | chr5_3:20646007-20646026 | None:intergenic | 45.0% | |
| TGCATGTTTCGGAGGAAAAG+AGG | + | chr5_3:20646008-20646027 | None:intergenic | 45.0% | |
| ! | GATAAGAGTGCATGTTTCGG+AGG | + | chr5_3:20646016-20646035 | None:intergenic | 45.0% |
| CATCAGGCAACACTTCCTTT+GGG | + | chr5_3:20646890-20646909 | None:intergenic | 45.0% | |
| CTGAACCTTCTCTCTACAAG+CGG | + | chr5_3:20647381-20647400 | None:intergenic | 45.0% | |
| ACACACACGAAAAGGTAACG+AGG | + | chr5_3:20647449-20647468 | None:intergenic | 45.0% | |
| GCATTCATGTCGAATCTGAG+CGG | - | chr5_3:20648234-20648253 | Msa0804690:intron | 45.0% | |
| CATACAATCACCTACAGGGA+AGG | + | chr5_3:20648368-20648387 | None:intergenic | 45.0% | |
| GGAGACAATATTCTGTGGAG+AGG | + | chr5_3:20648435-20648454 | None:intergenic | 45.0% | |
| ! | TGGAGTCGTTTGTTAGGACA+AGG | - | chr5_3:20648753-20648772 | Msa0804690:intron | 45.0% |
| CTGAACCTTCTCTCCATGAA+TGG | + | chr5_3:20649207-20649226 | None:intergenic | 45.0% | |
| !! | GTTTGGTGGATTGATGAGCA+TGG | - | chr5_3:20649770-20649789 | Msa0804690:intron | 45.0% |
| !! | TCTCTTGCTGTTTATGGTGG+TGG | - | chr5_3:20650397-20650416 | Msa0804690:intron | 45.0% |
| CTTCGAACAGTTTGGGAATC+TGG | + | chr5_3:20650571-20650590 | None:intergenic | 45.0% | |
| CCCAAACTGTTCGAAGTTGT+AGG | - | chr5_3:20650575-20650594 | Msa0804690:intron | 45.0% | |
| CCCTACAACTTCGAACAGTT+TGG | + | chr5_3:20650579-20650598 | None:intergenic | 45.0% | |
| GGAGCTGGCCAATAAAATAG+AGG | - | chr5_3:20650740-20650759 | Msa0804690:intron | 45.0% | |
| !!! | AAAATAATTTTTATTTGATA+AGG | - | chr5_3:20646207-20646226 | Msa0804690:CDS | 5.0% |
| !! | AAAATTTAATTAATAATCTT+AGG | + | chr5_3:20650698-20650717 | None:intergenic | 5.0% |
| ! | GAGGTGGTGAGTTGAAGTGA+AGG | + | chr5_3:20645897-20645916 | None:intergenic | 50.0% |
| GCATCCGAGGAGAATTCAAG+CGG | - | chr5_3:20646774-20646793 | Msa0804690:intron | 50.0% | |
| AGCACCGCTTGAATTCTCCT+CGG | + | chr5_3:20646781-20646800 | None:intergenic | 50.0% | |
| TGTGGAGAATGAGGACCCAA+AGG | - | chr5_3:20646872-20646891 | Msa0804690:intron | 50.0% | |
| CCATCAGGCAACACTTCCTT+TGG | + | chr5_3:20646891-20646910 | None:intergenic | 50.0% | |
| !! | CCAAAGGAAGTGTTGCCTGA+TGG | - | chr5_3:20646888-20646907 | Msa0804690:intron | 50.0% |
| !! | GAAGTGTTGCCTGATGGAGA+AGG | - | chr5_3:20646894-20646913 | Msa0804690:intron | 50.0% |
| TATCGAGCAAATCCAACGGC+AGG | + | chr5_3:20646920-20646939 | None:intergenic | 50.0% | |
| AGTTGCTCAGTTAACCGCTC+AGG | + | chr5_3:20647186-20647205 | None:intergenic | 50.0% | |
| TCTAGCCGCTTGTAGAGAGA+AGG | - | chr5_3:20647373-20647392 | Msa0804690:intron | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | - | chr5_3:20647611-20647630 | Msa0804690:intron | 50.0% | |
| GCATTTGTGTCGAACCTGAG+CGG | - | chr5_3:20647806-20647825 | Msa0804690:intron | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | - | chr5_3:20647611-20647630 | Msa0804690:intron | 50.0% | |
| TTTACGTGAGCCTTCCCTGT+AGG | - | chr5_3:20648355-20648374 | Msa0804690:intron | 50.0% | |
| GCGGTGGAGACAATATTCTG+TGG | + | chr5_3:20648440-20648459 | None:intergenic | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | - | chr5_3:20647611-20647630 | Msa0804690:intron | 50.0% | |
| GCATTCATGTCGTACCTGAG+CGG | - | chr5_3:20649904-20649923 | Msa0804690:CDS | 50.0% | |
| AGACAGATAGCATGAGACGC+AGG | + | chr5_3:20650073-20650092 | None:intergenic | 50.0% | |
| !! | TTATGGTGGTGGTGCCATAG+TGG | - | chr5_3:20650408-20650427 | Msa0804690:intron | 50.0% |
| AGTTAACCACAGGGCCACTA+TGG | + | chr5_3:20650425-20650444 | None:intergenic | 50.0% | |
| AGTGGCCCTGTGGTTAACTT+CGG | - | chr5_3:20650426-20650445 | Msa0804690:intron | 50.0% | |
| AACGGCCGAAGTTAACCACA+GGG | + | chr5_3:20650434-20650453 | None:intergenic | 50.0% | |
| TGGTTAACTTCGGCCGTTGT+TGG | - | chr5_3:20650436-20650455 | Msa0804690:intron | 50.0% | |
| CTGTTCGAAGTTGTAGGGCT+TGG | - | chr5_3:20650581-20650600 | Msa0804690:intron | 50.0% | |
| TGTAAGGGCAACAGCATCCG+AGG | - | chr5_3:20646761-20646780 | Msa0804690:intron | 55.0% | |
| GAGGAGAATTCAAGCGGTGC+TGG | - | chr5_3:20646780-20646799 | Msa0804690:intron | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | + | chr5_3:20647628-20647647 | None:intergenic | 55.0% | |
| AGTTGCTCAGCTAACCGCTC+AGG | + | chr5_3:20647823-20647842 | None:intergenic | 55.0% | |
| AGTTGCTCAGCTAACCGCTC+AGG | + | chr5_3:20647823-20647842 | None:intergenic | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | + | chr5_3:20647628-20647647 | None:intergenic | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | + | chr5_3:20647628-20647647 | None:intergenic | 55.0% | |
| CAACGGCCGAAGTTAACCAC+AGG | + | chr5_3:20650435-20650454 | None:intergenic | 55.0% | |
| GCAGAGAAACAGAGAGGAGC+TGG | - | chr5_3:20650725-20650744 | Msa0804690:intron | 55.0% | |
| AGGAAAGGAGCTGTGAGGGA+TGG | + | chr5_3:20650903-20650922 | None:intergenic | 55.0% | |
| GCAGAGGAAAGGAGCTGTGA+GGG | + | chr5_3:20650907-20650926 | None:intergenic | 55.0% | |
| AGCAGAGGAAAGGAGCTGTG+AGG | + | chr5_3:20650908-20650927 | None:intergenic | 55.0% | |
| AACGGCAGGCCTTCTCCATC+AGG | + | chr5_3:20646906-20646925 | None:intergenic | 60.0% | |
| TGATGGAGAAGGCCTGCCGT+TGG | - | chr5_3:20646905-20646924 | Msa0804690:intron | 60.0% | |
| GCACTCGTGTCGAACCTGAG+CGG | - | chr5_3:20647169-20647188 | Msa0804690:intron | 60.0% | |
| !! | GTGGTGCCATAGTGGCCCTG+TGG | - | chr5_3:20650416-20650435 | Msa0804690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 20645868 | 20650979 | 20645868 | ID=Msa0804690;Name=Msa0804690 |
| chr5_3 | mRNA | 20645868 | 20650979 | 20645868 | ID=Msa0804690-mRNA-1;Parent=Msa0804690;Name=Msa0804690-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|0.8|0.66|6|160|184 |
| chr5_3 | exon | 20645868 | 20646021 | 20645868 | ID=Msa0804690-mRNA-1:exon:8340;Parent=Msa0804690-mRNA-1 |
| chr5_3 | exon | 20646044 | 20646118 | 20646044 | ID=Msa0804690-mRNA-1:exon:8339;Parent=Msa0804690-mRNA-1 |
| chr5_3 | exon | 20646204 | 20646275 | 20646204 | ID=Msa0804690-mRNA-1:exon:8338;Parent=Msa0804690-mRNA-1 |
| chr5_3 | exon | 20646367 | 20646471 | 20646367 | ID=Msa0804690-mRNA-1:exon:8337;Parent=Msa0804690-mRNA-1 |
| chr5_3 | exon | 20649900 | 20650105 | 20649900 | ID=Msa0804690-mRNA-1:exon:8336;Parent=Msa0804690-mRNA-1 |
| chr5_3 | exon | 20650810 | 20650979 | 20650810 | ID=Msa0804690-mRNA-1:exon:8335;Parent=Msa0804690-mRNA-1 |
| chr5_3 | five_prime_UTR | 20650913 | 20650979 | 20650913 | ID=Msa0804690-mRNA-1:five_prime_utr;Parent=Msa0804690-mRNA-1 |
| chr5_3 | CDS | 20650810 | 20650912 | 20650810 | ID=Msa0804690-mRNA-1:cds;Parent=Msa0804690-mRNA-1 |
| chr5_3 | CDS | 20649900 | 20650105 | 20649900 | ID=Msa0804690-mRNA-1:cds;Parent=Msa0804690-mRNA-1 |
| chr5_3 | CDS | 20646367 | 20646471 | 20646367 | ID=Msa0804690-mRNA-1:cds;Parent=Msa0804690-mRNA-1 |
| chr5_3 | CDS | 20646204 | 20646275 | 20646204 | ID=Msa0804690-mRNA-1:cds;Parent=Msa0804690-mRNA-1 |
| chr5_3 | CDS | 20646050 | 20646118 | 20646050 | ID=Msa0804690-mRNA-1:cds;Parent=Msa0804690-mRNA-1 |
| chr5_3 | three_prime_UTR | 20646044 | 20646049 | 20646044 | ID=Msa0804690-mRNA-1:three_prime_utr;Parent=Msa0804690-mRNA-1 |
| chr5_3 | three_prime_UTR | 20645868 | 20646021 | 20645868 | ID=Msa0804690-mRNA-1:three_prime_utr;Parent=Msa0804690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
