AlfalfaGEDB | Msa0168410

M. sativa cultivar zhongmu-4 / Msa0168410

KEGG: -
GO: GO:0000002 GO:0000018 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006996 GO:0007005 GO:0008150 GO:0009892 GO:0009987 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045910 GO:0045934 GO:0048046 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:1901363
PFAM: PF00436.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168410	RHN80119.1	92.096	291	3	1	1	271	39	329	0.0	548

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168410	sp\|Q9SX99\|OSB1_ARATH	34.722	216	122	5	60	257	39	253	4.44e-31	119

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168410	A0A396JPA6	92.096	291	3	1	1	271	39	329	0.0	548

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005380	Msa0168410	-0.810033	1.409337e-50	-8.615850e-47
Msa0027250	Msa0168410	0.875726	2.455455e-68	-8.615850e-47
Msa0038290	Msa0168410	0.845907	3.030383e-59	-8.615850e-47
Msa0057770	Msa0168410	0.813573	2.390865e-51	-8.615850e-47
Msa0075160	Msa0168410	0.870339	1.572322e-66	-8.615850e-47
Msa0089700	Msa0168410	0.819594	1.069953e-52	-8.615850e-47
Msa0093950	Msa0168410	0.825219	5.281878e-54	-8.615850e-47
Msa0112550	Msa0168410	0.827307	1.681720e-54	-8.615850e-47
Msa0123000	Msa0168410	0.875126	3.938875e-68	-8.615850e-47
Msa0126000	Msa0168410	0.824289	8.747917e-54	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168410	MtrunA17_Chr1g0184811	92.096	291	3	1	1	271	39	329	0.0	548
Msa0168410	MtrunA17_Chr1g0153971	38.403	263	135	9	14	258	8	261	1.13e-45	154
Msa0168410	MtrunA17_Chr6g0488631	62.500	48	16	1	190	237	422	467	4.25e-14	71.6
Msa0168410	MtrunA17_Chr6g0488631	44.118	68	36	1	190	257	351	416	1.29e-12	67.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0168410	AT1G47720.1	34.722	216	122	5	60	257	39	253	4.52e-32	119
Msa0168410	AT4G20010.1	33.032	221	117	5	54	246	76	293	1.49e-26	107
Msa0168410	AT4G20010.1	57.692	52	20	1	190	241	310	359	1.67e-12	67.0
Msa0168410	AT4G20010.2	33.937	221	115	6	54	246	76	293	5.17e-26	105
Msa0168410	AT4G20010.2	57.692	52	20	1	190	241	310	359	1.61e-12	67.4
Msa0168410	AT5G44785.2	33.971	209	101	6	66	244	71	272	2.38e-22	95.9
Msa0168410	AT5G44785.2	58.182	55	21	1	190	244	380	432	4.90e-14	72.0
Msa0168410	AT5G44785.1	33.971	209	101	6	66	244	71	272	2.69e-22	95.9
Msa0168410	AT5G44785.1	58.182	55	21	1	190	244	378	430	5.36e-14	71.6
Msa0168410	AT1G31010.1	25.957	235	132	5	60	254	56	288	3.44e-18	83.6

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Find 104 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGCTTCGCAAATGTCG+TGG	0.597891	1_4:-51006372	Msa0168410:CDS
AAAATGGGAGTTTGAATTTG+GGG	0.572671	1_4:+51006617	None:intergenic
AAATATTAGACATGAGGATG+GGG	0.613312	1_4:-51002023	Msa0168410:CDS
AAATCAAACACCTTCCTTCC+GGG	0.356650	1_4:-51006429	Msa0168410:CDS
AAATGGTACGACTGGTTCTG+TGG	0.623810	1_4:-51005605	Msa0168410:CDS
AACGAAACCGATTAAATTGA+CGG	0.477207	1_4:+51006465	None:intergenic
AACTGCACAAAGAAGTTTCT+AGG	0.297736	1_4:+51001890	None:intergenic
AACTGGAAATATTAGACATG+AGG	0.632652	1_4:-51002029	Msa0168410:CDS
AAGAAGTTTCTAGGTTGAAA+TGG	0.372283	1_4:+51001899	None:intergenic
AAGAGAGTGTTGTGGAAAAT+GGG	0.490916	1_4:+51006602	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATTTGGGGATGAAATTA+GGG	+	chr1_4:51001765-51001784	None:intergenic	30.0%
TTGAATTTGGGGATGAAATT+AGG	+	chr1_4:51001766-51001785	None:intergenic	30.0%
AAAATGGGAGTTTGAATTTG+GGG	+	chr1_4:51001777-51001796	None:intergenic	30.0%
GAAAATGGGAGTTTGAATTT+GGG	+	chr1_4:51001778-51001797	None:intergenic	30.0%
AAGTTGAAATTTCTGTGGAT+TGG	+	chr1_4:51001820-51001839	None:intergenic	30.0%
AACGAAACCGATTAAATTGA+CGG	+	chr1_4:51001929-51001948	None:intergenic	30.0%
AATTGAATGTCAATGTGTTG+TGG	-	chr1_4:51002253-51002272	Msa0168410:intron	30.0%
TTCATTATGTCTGATGACAA+TGG	-	chr1_4:51002360-51002379	Msa0168410:intron	30.0%
CTTCAAATTATCAATTCTGG+AGG	-	chr1_4:51002565-51002584	Msa0168410:intron	30.0%
ATTTGAACAGAATTTACCAG+TGG	-	chr1_4:51002661-51002680	Msa0168410:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_4	gene	51001627	51006786	51001627	ID=Msa0168410;Name=Msa0168410
chr1_4	mRNA	51001627	51006786	51001627	ID=Msa0168410-mRNA-1;Parent=Msa0168410;Name=Msa0168410-mRNA-1;_AED=0.22;_eAED=0.22;_QI=67\|0.66\|0.75\|1\|1\|1\|4\|327\|271
chr1_4	exon	51001627	51002142	51001627	ID=Msa0168410-mRNA-1:exon:15037;Parent=Msa0168410-mRNA-1
chr1_4	exon	51005543	51005649	51005543	ID=Msa0168410-mRNA-1:exon:15036;Parent=Msa0168410-mRNA-1
chr1_4	exon	51006092	51006125	51006092	ID=Msa0168410-mRNA-1:exon:15035;Parent=Msa0168410-mRNA-1
chr1_4	exon	51006234	51006786	51006234	ID=Msa0168410-mRNA-1:exon:15034;Parent=Msa0168410-mRNA-1
chr1_4	five_prime_UTR	51006720	51006786	51006720	ID=Msa0168410-mRNA-1:five_prime_utr;Parent=Msa0168410-mRNA-1
chr1_4	CDS	51006234	51006719	51006234	ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1
chr1_4	CDS	51006092	51006125	51006092	ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1
chr1_4	CDS	51005543	51005649	51005543	ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1
chr1_4	CDS	51001954	51002142	51001954	ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1
chr1_4	three_prime_UTR	51001627	51001953	51001627	ID=Msa0168410-mRNA-1:three_prime_utr;Parent=Msa0168410-mRNA-1

Gene Sequence

>Msa0168410

ATGGCGTTAGAGCAAGCAGTTTCACTTTCATCAACTCGCTTCAGAAACCTCACCACTTTCCCCCAAAACCCTAATTTCATCCCCAAATTCAAACTCCCATTTTCCACAACACTCTCTTCCAAACCAATCCACAGAAATTTCAACTTGAAGTGCTCCAATTCCATCACCAATAATGGAGCAGCATCATACCCTAAACCCCCTGAAATTTCATGGAACAAGGACCTCAGCAACTCCGTCAATTTAATCGGTTTCGTTGCGAACCCCATCGAAATCAAACACCTTCCTTCCGGGAAAGTTGTTGCTTGGACTCGTCTCTCCGTCAAGAAAAACGCTTCGCAAATGTCGTGGATTCATTTGACATTTTGGGATGAACTTGCTCATGTTGCTTCTCAGCATGTTCAGAAAGGTCATCAGATTCATGTTTCTGGTCGGCTTGTTACTGATACTGTTGATTCTGTTGATGGCAAACAACAAACTTACTATAAGGTTGTTGCTCAGCAGCTGAATTTCATTGATAGGAGCAAGAAGGCGAGTTATGCTTCAAATGGTACGACTGGTTCTGTGGTGGAATTATGGCAAGCTTTCTTTGCCAACCCAGGGGAGTGGTGGGACAATAGGAGGAACAAGAGGAACCCCAAAGCTCCTGATTTTAAGCACAAGGATACTGGAGAAGCTCTGTGGATTGATGGTAGATCCACTCCACCATGGGTCAAATCCCAACTGGAAATATTAGACATGAGGATGGGGTCTTATACCGGTCAAAATGGTAGGATGCCCGTAGATATGGTGAGCGCAGATGAAATGTTGTCTTTCTAA

Protein sequence

>Msa0168410

MALEQAVSLSSTRFRNLTTFPQNPNFIPKFKLPFSTTLSSKPIHRNFNLKCSNSITNNGAASYPKPPEISWNKDLSNSVNLIGFVANPIEIKHLPSGKVVAWTRLSVKKNASQMSWIHLTFWDELAHVASQHVQKGHQIHVSGRLVTDTVDSVDGKQQTYYKVVAQQLNFIDRSKKASYASNGTTGSVVELWQAFFANPGEWWDNRRNKRNPKAPDFKHKDTGEALWIDGRSTPPWVKSQLEILDMRMGSYTGQNGRMPVDMVSADEMLSF*