Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168410 | RHN80119.1 | 92.096 | 291 | 3 | 1 | 1 | 271 | 39 | 329 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168410 | sp|Q9SX99|OSB1_ARATH | 34.722 | 216 | 122 | 5 | 60 | 257 | 39 | 253 | 4.44e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168410 | A0A396JPA6 | 92.096 | 291 | 3 | 1 | 1 | 271 | 39 | 329 | 0.0 | 548 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005380 | Msa0168410 | -0.810033 | 1.409337e-50 | -8.615850e-47 |
| Msa0027250 | Msa0168410 | 0.875726 | 2.455455e-68 | -8.615850e-47 |
| Msa0038290 | Msa0168410 | 0.845907 | 3.030383e-59 | -8.615850e-47 |
| Msa0057770 | Msa0168410 | 0.813573 | 2.390865e-51 | -8.615850e-47 |
| Msa0075160 | Msa0168410 | 0.870339 | 1.572322e-66 | -8.615850e-47 |
| Msa0089700 | Msa0168410 | 0.819594 | 1.069953e-52 | -8.615850e-47 |
| Msa0093950 | Msa0168410 | 0.825219 | 5.281878e-54 | -8.615850e-47 |
| Msa0112550 | Msa0168410 | 0.827307 | 1.681720e-54 | -8.615850e-47 |
| Msa0123000 | Msa0168410 | 0.875126 | 3.938875e-68 | -8.615850e-47 |
| Msa0126000 | Msa0168410 | 0.824289 | 8.747917e-54 | -8.615850e-47 |
| Msa0132630 | Msa0168410 | 0.823570 | 1.289893e-53 | -8.615850e-47 |
| Msa0133140 | Msa0168410 | 0.803455 | 3.457078e-49 | -8.615850e-47 |
| Msa0136870 | Msa0168410 | 0.810689 | 1.017591e-50 | -8.615850e-47 |
| Msa0138680 | Msa0168410 | 0.814783 | 1.292178e-51 | -8.615850e-47 |
| Msa0167500 | Msa0168410 | 0.885317 | 9.027748e-72 | -8.615850e-47 |
| Msa0168310 | Msa0168410 | -0.819418 | 1.173776e-52 | -8.615850e-47 |
| Msa0168410 | Msa0178840 | 0.824148 | 9.441591e-54 | -8.615850e-47 |
| Msa0168410 | Msa0213620 | 0.813640 | 2.310324e-51 | -8.615850e-47 |
| Msa0168410 | Msa0220400 | 0.841598 | 4.311910e-58 | -8.615850e-47 |
| Msa0168410 | Msa0299530 | 0.823636 | 1.245165e-53 | -8.615850e-47 |
| Msa0168410 | Msa0384780 | 0.818502 | 1.895573e-52 | -8.615850e-47 |
| Msa0168410 | Msa0416510 | -0.813046 | 3.120213e-51 | -8.615850e-47 |
| Msa0168410 | Msa0480090 | 0.814497 | 1.494936e-51 | -8.615850e-47 |
| Msa0168410 | Msa0500700 | 0.817210 | 3.711206e-52 | -8.615850e-47 |
| Msa0168410 | Msa0512320 | 0.808522 | 2.971479e-50 | -8.615850e-47 |
| Msa0168410 | Msa0512950 | 0.806527 | 7.876836e-50 | -8.615850e-47 |
| Msa0168410 | Msa0523490 | 0.802531 | 5.367857e-49 | -8.615850e-47 |
| Msa0168410 | Msa0542060 | 0.841519 | 4.523422e-58 | -8.615850e-47 |
| Msa0168410 | Msa0548650 | 0.830599 | 2.681679e-55 | -8.615850e-47 |
| Msa0168410 | Msa0556230 | 0.806398 | 8.389021e-50 | -8.615850e-47 |
| Msa0168410 | Msa0556660 | -0.821005 | 5.081725e-53 | -8.615850e-47 |
| Msa0168410 | Msa0559650 | 0.827075 | 1.910918e-54 | -8.615850e-47 |
| Msa0168410 | Msa0566120 | 0.805529 | 1.277795e-49 | -8.615850e-47 |
| Msa0168410 | Msa0582490 | -0.820354 | 7.171764e-53 | -8.615850e-47 |
| Msa0168410 | Msa0589260 | 0.839278 | 1.743369e-57 | -8.615850e-47 |
| Msa0168410 | Msa0611540 | 0.818750 | 1.665143e-52 | -8.615850e-47 |
| Msa0168410 | Msa0612080 | -0.808099 | 3.657590e-50 | -8.615850e-47 |
| Msa0168410 | Msa0637930 | 0.831058 | 2.070207e-55 | -8.615850e-47 |
| Msa0168410 | Msa0645800 | 0.842386 | 2.669517e-58 | -8.615850e-47 |
| Msa0168410 | Msa0654410 | 0.833153 | 6.278820e-56 | -8.615850e-47 |
| Msa0168410 | Msa0654490 | 0.810574 | 1.077324e-50 | -8.615850e-47 |
| Msa0168410 | Msa0685110 | 0.843680 | 1.207165e-58 | -8.615850e-47 |
| Msa0168410 | Msa0685500 | 0.839910 | 1.194156e-57 | -8.615850e-47 |
| Msa0168410 | Msa0715670 | -0.812160 | 4.875820e-51 | -8.615850e-47 |
| Msa0168410 | Msa0719900 | 0.865877 | 4.293828e-65 | -8.615850e-47 |
| Msa0168410 | Msa0804690 | 0.851990 | 6.191005e-61 | -8.615850e-47 |
| Msa0168410 | Msa0823480 | 0.810283 | 1.244960e-50 | -8.615850e-47 |
| Msa0168410 | Msa0853200 | 0.800794 | 1.219236e-48 | -8.615850e-47 |
| Msa0168410 | Msa0882480 | 0.802972 | 4.353122e-49 | -8.615850e-47 |
| Msa0168410 | Msa0940910 | -0.801259 | 9.797082e-49 | -8.615850e-47 |
| Msa0168410 | Msa0943970 | -0.801957 | 7.047014e-49 | -8.615850e-47 |
| Msa0168410 | Msa0944020 | -0.803966 | 2.709157e-49 | -8.615850e-47 |
| Msa0168410 | Msa0960880 | 0.805496 | 1.298163e-49 | -8.615850e-47 |
| Msa0168410 | Msa0967170 | -0.852431 | 4.637854e-61 | -8.615850e-47 |
| Msa0168410 | Msa0994250 | 0.811131 | 8.163243e-51 | -8.615850e-47 |
| Msa0168410 | Msa1030420 | 0.837709 | 4.429494e-57 | -8.615850e-47 |
| Msa0168410 | Msa1068600 | -0.801216 | 9.997372e-49 | -8.615850e-47 |
| Msa0168410 | Msa1071180 | 0.800032 | 1.742965e-48 | -8.615850e-47 |
| Msa0168410 | Msa1080610 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
| Msa0168410 | Msa1080680 | 0.804089 | 2.553690e-49 | -8.615850e-47 |
| Msa0168410 | Msa1124530 | 0.808031 | 3.781587e-50 | -8.615850e-47 |
| Msa0168410 | Msa1126320 | 0.806789 | 6.934869e-50 | -8.615850e-47 |
| Msa0168410 | Msa1128520 | 0.822065 | 2.890938e-53 | -8.615850e-47 |
| Msa0168410 | Msa1128610 | 0.807758 | 4.323150e-50 | -8.615850e-47 |
| Msa0168410 | Msa1163190 | 0.830284 | 3.201877e-55 | -8.615850e-47 |
| Msa0168410 | Msa1164720 | 0.817632 | 2.981962e-52 | -8.615850e-47 |
| Msa0168410 | Msa1167150 | 0.810244 | 1.269335e-50 | -8.615850e-47 |
| Msa0168410 | Msa1173800 | -0.810775 | 9.747498e-51 | -8.615850e-47 |
| Msa0168410 | Msa1190100 | 0.802440 | 5.603909e-49 | -8.615850e-47 |
| Msa0168410 | Msa1238660 | -0.815948 | 7.116678e-52 | -8.615850e-47 |
| Msa0168410 | Msa1258030 | 0.800943 | 1.136943e-48 | -8.615850e-47 |
| Msa0168410 | Msa1319560 | -0.804969 | 1.673581e-49 | -8.615850e-47 |
| Msa0168410 | Msa1325410 | 0.826127 | 3.217091e-54 | -8.615850e-47 |
| Msa0168410 | Msa1325560 | 0.837062 | 6.488646e-57 | -8.615850e-47 |
| Msa0168410 | Msa1356600 | 0.840054 | 1.095392e-57 | -8.615850e-47 |
| Msa0168410 | Msa1361670 | 0.801036 | 1.088160e-48 | -8.615850e-47 |
| Msa0168410 | Msa1363820 | 0.830027 | 3.699284e-55 | -8.615850e-47 |
| Msa0168410 | Msa1364350 | 0.836053 | 1.172431e-56 | -8.615850e-47 |
| Msa0168410 | Msa1375970 | 0.804740 | 1.868372e-49 | -8.615850e-47 |
| Msa0168410 | Msa1431510 | 0.806886 | 6.615157e-50 | -8.615850e-47 |
| Msa0168410 | Msa1452710 | -0.810522 | 1.105356e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168410 | MtrunA17_Chr1g0184811 | 92.096 | 291 | 3 | 1 | 1 | 271 | 39 | 329 | 0.0 | 548 |
| Msa0168410 | MtrunA17_Chr1g0153971 | 38.403 | 263 | 135 | 9 | 14 | 258 | 8 | 261 | 1.13e-45 | 154 |
| Msa0168410 | MtrunA17_Chr6g0488631 | 62.500 | 48 | 16 | 1 | 190 | 237 | 422 | 467 | 4.25e-14 | 71.6 |
| Msa0168410 | MtrunA17_Chr6g0488631 | 44.118 | 68 | 36 | 1 | 190 | 257 | 351 | 416 | 1.29e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0168410 | AT1G47720.1 | 34.722 | 216 | 122 | 5 | 60 | 257 | 39 | 253 | 4.52e-32 | 119 |
| Msa0168410 | AT4G20010.1 | 33.032 | 221 | 117 | 5 | 54 | 246 | 76 | 293 | 1.49e-26 | 107 |
| Msa0168410 | AT4G20010.1 | 57.692 | 52 | 20 | 1 | 190 | 241 | 310 | 359 | 1.67e-12 | 67.0 |
| Msa0168410 | AT4G20010.2 | 33.937 | 221 | 115 | 6 | 54 | 246 | 76 | 293 | 5.17e-26 | 105 |
| Msa0168410 | AT4G20010.2 | 57.692 | 52 | 20 | 1 | 190 | 241 | 310 | 359 | 1.61e-12 | 67.4 |
| Msa0168410 | AT5G44785.2 | 33.971 | 209 | 101 | 6 | 66 | 244 | 71 | 272 | 2.38e-22 | 95.9 |
| Msa0168410 | AT5G44785.2 | 58.182 | 55 | 21 | 1 | 190 | 244 | 380 | 432 | 4.90e-14 | 72.0 |
| Msa0168410 | AT5G44785.1 | 33.971 | 209 | 101 | 6 | 66 | 244 | 71 | 272 | 2.69e-22 | 95.9 |
| Msa0168410 | AT5G44785.1 | 58.182 | 55 | 21 | 1 | 190 | 244 | 378 | 430 | 5.36e-14 | 71.6 |
| Msa0168410 | AT1G31010.1 | 25.957 | 235 | 132 | 5 | 60 | 254 | 56 | 288 | 3.44e-18 | 83.6 |
Find 104 sgRNAs with CRISPR-Local
Find 358 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTGGATTCATTTGACATTT+TGG | 0.051547 | 1_4:-51006354 | Msa0168410:CDS |
| TTGAATTTGGGGATGAAATT+AGG | 0.122392 | 1_4:+51006628 | None:intergenic |
| ATTTGTAGAACCAAAATTTA+TGG | 0.137855 | 1_4:+51001857 | None:intergenic |
| GGAAAATGGGAGTTTGAATT+TGG | 0.165018 | 1_4:+51006615 | None:intergenic |
| TCCTTGTTCCATGAAATTTC+AGG | 0.224276 | 1_4:+51006499 | None:intergenic |
| GGTCATCAGATTCATGTTTC+TGG | 0.230684 | 1_4:-51006292 | Msa0168410:CDS |
| GAGAAGAATTGGTGAAAATT+TGG | 0.236450 | 1_4:-51001662 | Msa0168410:three_prime_UTR |
| TGCTTAAAATCAGGAGCTTT+GGG | 0.240351 | 1_4:+51002114 | None:intergenic |
| GAAGAGAGTGTTGTGGAAAA+TGG | 0.274002 | 1_4:+51006601 | None:intergenic |
| TGGGGATGAAATTAGGGTTT+TGG | 0.282218 | 1_4:+51006635 | None:intergenic |
| AACTGCACAAAGAAGTTTCT+AGG | 0.297736 | 1_4:+51001890 | None:intergenic |
| TGAATTTGGGGATGAAATTA+GGG | 0.312987 | 1_4:+51006629 | None:intergenic |
| TTTGTAGAACCAAAATTTAT+GGG | 0.327478 | 1_4:+51001858 | None:intergenic |
| GAAAATGGGAGTTTGAATTT+GGG | 0.332653 | 1_4:+51006616 | None:intergenic |
| GTGCTTAAAATCAGGAGCTT+TGG | 0.338408 | 1_4:+51002113 | None:intergenic |
| GATACTGTTGATTCTGTTGA+TGG | 0.341638 | 1_4:-51006256 | Msa0168410:CDS |
| GTATGATGCTGCTCCATTAT+TGG | 0.343435 | 1_4:+51006531 | None:intergenic |
| GAAATCAAACACCTTCCTTC+CGG | 0.355607 | 1_4:-51006430 | Msa0168410:CDS |
| AAATCAAACACCTTCCTTCC+GGG | 0.356650 | 1_4:-51006429 | Msa0168410:CDS |
| AGCAACTCCGTCAATTTAAT+CGG | 0.357203 | 1_4:-51006472 | Msa0168410:CDS |
| CAAACAACAAACTTACTATA+AGG | 0.360042 | 1_4:-51006233 | Msa0168410:intron |
| CAGATATTGATACTTTAATC+TGG | 0.366821 | 1_4:-51001731 | Msa0168410:three_prime_UTR |
| CTTCCGGGAAAGTTGTTGCT+TGG | 0.369233 | 1_4:-51006414 | Msa0168410:CDS |
| CTATTGTCCCACCACTCCCC+TGG | 0.369869 | 1_4:+51005553 | None:intergenic |
| AAGAAGTTTCTAGGTTGAAA+TGG | 0.372283 | 1_4:+51001899 | None:intergenic |
| TGAAACGACAACAGCAGAAA+TGG | 0.376407 | 1_4:-51006716 | Msa0168410:exon |
| TCCAATTCCATCACCAATAA+TGG | 0.379397 | 1_4:-51006544 | Msa0168410:CDS |
| CAGGGGAGTGGTGGGACAAT+AGG | 0.384072 | 1_4:-51005552 | Msa0168410:CDS |
| TCCATTATTGGTGATGGAAT+TGG | 0.384641 | 1_4:+51006543 | None:intergenic |
| GGGTCTTATACCGGTCAAAA+TGG | 0.387486 | 1_4:-51002003 | Msa0168410:CDS |
| TGTCGTTTCACTCGATGATA+AGG | 0.400190 | 1_4:+51006729 | None:intergenic |
| ACATTACATTGGGCAAGGTT+TGG | 0.401166 | 1_4:+51001923 | None:intergenic |
| GGAACATTGTTTATAGTCTC+TGG | 0.405710 | 1_4:-51001833 | Msa0168410:three_prime_UTR |
| CATGTCTAATATTTCCAGTT+GGG | 0.406821 | 1_4:+51002032 | None:intergenic |
| GTCGTTTCACTCGATGATAA+GGG | 0.407257 | 1_4:+51006730 | None:intergenic |
| TGGTAGGATGCCCGTAGATA+TGG | 0.414708 | 1_4:-51001983 | Msa0168410:CDS |
| AGTCCAAGCAACAACTTTCC+CGG | 0.430883 | 1_4:+51006411 | None:intergenic |
| AGCAGCTGAATTTCATTGAT+AGG | 0.434295 | 1_4:-51006093 | Msa0168410:CDS |
| CCTTGTTCCATGAAATTTCA+GGG | 0.435573 | 1_4:+51006500 | None:intergenic |
| GGAGAAGCTCTGTGGATTGA+TGG | 0.439305 | 1_4:-51002081 | Msa0168410:CDS |
| GAAATTTCTGTGGATTGGTT+TGG | 0.442612 | 1_4:+51006579 | None:intergenic |
| AAGTTGAAATTTCTGTGGAT+TGG | 0.456639 | 1_4:+51006574 | None:intergenic |
| TTGCCAACCCAGGGGAGTGG+TGG | 0.459728 | 1_4:-51005561 | Msa0168410:CDS |
| CTGGTTCTGTGGTGGAATTA+TGG | 0.460092 | 1_4:-51005594 | Msa0168410:CDS |
| GTATCCTTGTGCTTAAAATC+AGG | 0.463490 | 1_4:+51002105 | None:intergenic |
| CCAGCAAAATTACAATGAAC+GGG | 0.464652 | 1_4:+51001684 | None:intergenic |
| TCCAGTTGGGATTTGACCCA+TGG | 0.465033 | 1_4:+51002045 | None:intergenic |
| ACCATGGGTCAAATCCCAAC+TGG | 0.466020 | 1_4:-51002046 | Msa0168410:CDS |
| GGAAGGTGTTTGATTTCGAT+GGG | 0.469541 | 1_4:+51006436 | None:intergenic |
| CAAGCTTTCTTTGCCAACCC+AGG | 0.471812 | 1_4:-51005571 | Msa0168410:CDS |
| TTGAAATGGAACATTACATT+GGG | 0.476213 | 1_4:+51001913 | None:intergenic |
| AACGAAACCGATTAAATTGA+CGG | 0.477207 | 1_4:+51006465 | None:intergenic |
| TCTTTGCCAACCCAGGGGAG+TGG | 0.478438 | 1_4:-51005564 | Msa0168410:CDS |
| AGGAAGGTGTTTGATTTCGA+TGG | 0.480538 | 1_4:+51006435 | None:intergenic |
| TATTGTCCCACCACTCCCCT+GGG | 0.482045 | 1_4:+51005554 | None:intergenic |
| TCCAGCAAAATTACAATGAA+CGG | 0.484357 | 1_4:+51001683 | None:intergenic |
| ATCTGCGCTCACCATATCTA+CGG | 0.486147 | 1_4:+51001972 | None:intergenic |
| AAGAGAGTGTTGTGGAAAAT+GGG | 0.490916 | 1_4:+51006602 | None:intergenic |
| AATTCTAAACAATGGTAGCC+AGG | 0.505181 | 1_4:+51001772 | None:intergenic |
| GCTTCTCAGCATGTTCAGAA+AGG | 0.514976 | 1_4:-51006313 | Msa0168410:CDS |
| AAGCTTTCTTTGCCAACCCA+GGG | 0.515795 | 1_4:-51005570 | Msa0168410:CDS |
| ATGAGGATGGGGTCTTATAC+CGG | 0.520447 | 1_4:-51002012 | Msa0168410:CDS |
| TCATGTCTAATATTTCCAGT+TGG | 0.522776 | 1_4:+51002031 | None:intergenic |
| ATCAGATTCATGTTTCTGGT+CGG | 0.524990 | 1_4:-51006288 | Msa0168410:CDS |
| GGGAGTGGTGGGACAATAGG+AGG | 0.525627 | 1_4:-51005549 | Msa0168410:CDS |
| GTCCCACCACTCCCCTGGGT+TGG | 0.526435 | 1_4:+51005558 | None:intergenic |
| TGTTATTGTTTCAGGCAAGA+AGG | 0.526995 | 1_4:-51005641 | Msa0168410:intron |
| AAGGCGAGTTATGCTTCAAA+TGG | 0.528529 | 1_4:-51005622 | Msa0168410:CDS |
| ATGGAACATTACATTGGGCA+AGG | 0.536143 | 1_4:+51001918 | None:intergenic |
| GAAATATTAGACATGAGGAT+GGG | 0.536442 | 1_4:-51002024 | Msa0168410:CDS |
| TATGCTTCAAATGGTACGAC+TGG | 0.538035 | 1_4:-51005613 | Msa0168410:CDS |
| TGCTGCTCCATTATTGGTGA+TGG | 0.540830 | 1_4:+51006537 | None:intergenic |
| CTTATACCGGTCAAAATGGT+AGG | 0.543946 | 1_4:-51001999 | Msa0168410:CDS |
| GTTGAAATGGAACATTACAT+TGG | 0.549390 | 1_4:+51001912 | None:intergenic |
| GGAAATATTAGACATGAGGA+TGG | 0.554921 | 1_4:-51002025 | Msa0168410:CDS |
| TGCCAACCCAGGGGAGTGGT+GGG | 0.556445 | 1_4:-51005560 | Msa0168410:CDS |
| AGTTGGGATTTGACCCATGG+TGG | 0.556762 | 1_4:+51002048 | None:intergenic |
| CCCTGAAATTTCATGGAACA+AGG | 0.559947 | 1_4:-51006500 | Msa0168410:CDS |
| CAACAACTTTCCCGGAAGGA+AGG | 0.564641 | 1_4:+51006419 | None:intergenic |
| CTTGTTCCATGAAATTTCAG+GGG | 0.564810 | 1_4:+51006501 | None:intergenic |
| GGATTTGACCCATGGTGGAG+TGG | 0.565295 | 1_4:+51002053 | None:intergenic |
| TGGTAGATCCACTCCACCAT+GGG | 0.571714 | 1_4:-51002061 | Msa0168410:CDS |
| AAAATGGGAGTTTGAATTTG+GGG | 0.572671 | 1_4:+51006617 | None:intergenic |
| TCTGCGCTCACCATATCTAC+GGG | 0.572725 | 1_4:+51001973 | None:intergenic |
| TGAACGGGTAGGATCACTCT+TGG | 0.576354 | 1_4:+51001699 | None:intergenic |
| TCGTTTCACTCGATGATAAG+GGG | 0.584716 | 1_4:+51006731 | None:intergenic |
| TTGTTCCATGAAATTTCAGG+GGG | 0.591210 | 1_4:+51006502 | None:intergenic |
| GCTTAAAATCAGGAGCTTTG+GGG | 0.595796 | 1_4:+51002115 | None:intergenic |
| AAAACGCTTCGCAAATGTCG+TGG | 0.597891 | 1_4:-51006372 | Msa0168410:CDS |
| CAAAATTACAATGAACGGGT+AGG | 0.598641 | 1_4:+51001688 | None:intergenic |
| AAATATTAGACATGAGGATG+GGG | 0.613312 | 1_4:-51002023 | Msa0168410:CDS |
| ACTTCAAGTTGAAATTTCTG+TGG | 0.615724 | 1_4:+51006569 | None:intergenic |
| TTAAATTGACGGAGTTGCTG+AGG | 0.615841 | 1_4:+51006476 | None:intergenic |
| TGGTTTGGAAGAGAGTGTTG+TGG | 0.623476 | 1_4:+51006594 | None:intergenic |
| AAATGGTACGACTGGTTCTG+TGG | 0.623810 | 1_4:-51005605 | Msa0168410:CDS |
| AACTGGAAATATTAGACATG+AGG | 0.632652 | 1_4:-51002029 | Msa0168410:CDS |
| CAAGCAACAACTTTCCCGGA+AGG | 0.636873 | 1_4:+51006415 | None:intergenic |
| ATGGTAGATCCACTCCACCA+TGG | 0.638276 | 1_4:-51002062 | Msa0168410:CDS |
| CGTTTCACTCGATGATAAGG+GGG | 0.647632 | 1_4:+51006732 | None:intergenic |
| AGCTTTCTTTGCCAACCCAG+GGG | 0.662573 | 1_4:-51005569 | Msa0168410:CDS |
| AGGATACTGGAGAAGCTCTG+TGG | 0.677895 | 1_4:-51002089 | Msa0168410:CDS |
| GAAGGTGTTTGATTTCGATG+GGG | 0.681992 | 1_4:+51006437 | None:intergenic |
| TGGTACGACTGGTTCTGTGG+TGG | 0.688675 | 1_4:-51005602 | Msa0168410:CDS |
| GTGGGACAATAGGAGGAACA+AGG | 0.691913 | 1_4:-51005542 | Msa0168410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGAAAAAAAATAATTTGA+GGG | + | chr1_4:51003135-51003154 | None:intergenic | 10.0% |
| !! | ATATGAAAAAAAATAATTTG+AGG | + | chr1_4:51003136-51003155 | None:intergenic | 10.0% |
| !! | AACTAAATTGAATAATAAAA+TGG | - | chr1_4:51003680-51003699 | Msa0168410:intron | 10.0% |
| !! | ACTAAATTGAATAATAAAAT+GGG | - | chr1_4:51003681-51003700 | Msa0168410:intron | 10.0% |
| !!! | TCATTAATTCTTTAAAAAAA+TGG | + | chr1_4:51003721-51003740 | None:intergenic | 10.0% |
| !!! | TTTTATTTATATAATGATCT+GGG | + | chr1_4:51004661-51004680 | None:intergenic | 10.0% |
| !!! | TTTTTATTTATATAATGATC+TGG | + | chr1_4:51004662-51004681 | None:intergenic | 10.0% |
| !! | TCATATATACAATAAATAAA+TGG | - | chr1_4:51005306-51005325 | Msa0168410:intron | 10.0% |
| !! | TATTAAAACTTATAATTAGA+TGG | - | chr1_4:51005736-51005755 | Msa0168410:intron | 10.0% |
| !!! | CAATTTTTTATAAAATGAAA+TGG | + | chr1_4:51006198-51006217 | None:intergenic | 10.0% |
| !!! | TTATATATTAAGTGTACTTT+TGG | - | chr1_4:51002387-51002406 | Msa0168410:intron | 15.0% |
| !!! | TATCAATATGTTGATTTTTT+TGG | - | chr1_4:51003337-51003356 | Msa0168410:intron | 15.0% |
| !! | ACAATATTCAATTTACATAT+TGG | + | chr1_4:51003914-51003933 | None:intergenic | 15.0% |
| !! | TTTAAATAACTTATCCATTA+AGG | - | chr1_4:51004153-51004172 | Msa0168410:intron | 15.0% |
| !! | AAGAGATATTAAAATAATCT+TGG | + | chr1_4:51004337-51004356 | None:intergenic | 15.0% |
| !!! | GTTTTTATTTTAAAAACTTG+AGG | - | chr1_4:51004982-51005001 | Msa0168410:intron | 15.0% |
| !!! | GAATAATTATAAGTTTTTAG+GGG | + | chr1_4:51005686-51005705 | None:intergenic | 15.0% |
| !!! | GGAATAATTATAAGTTTTTA+GGG | + | chr1_4:51005687-51005706 | None:intergenic | 15.0% |
| !!! | TGGAATAATTATAAGTTTTT+AGG | + | chr1_4:51004317-51004336 | None:intergenic | 15.0% |
| !!! | TTTTTTATAAAATGAAATGG+AGG | + | chr1_4:51006195-51006214 | None:intergenic | 15.0% |
| !! | AAAAATCTAATTCTAAACAA+TGG | + | chr1_4:51006630-51006649 | None:intergenic | 15.0% |
| !!! | ATTGTTTAGAATTAGATTTT+TGG | - | chr1_4:51006629-51006648 | Msa0168410:CDS | 15.0% |
| !!! | GTCAATTTTCAGTTTTATTT+TGG | + | chr1_4:51001631-51001650 | None:intergenic | 20.0% |
| !! | TATCTTCAAATTATCAATTC+TGG | - | chr1_4:51002562-51002581 | Msa0168410:intron | 20.0% |
| !!! | GAATTGATTTTGACATTATT+TGG | + | chr1_4:51002616-51002635 | None:intergenic | 20.0% |
| !!! | AAATTCTGTTCAAATTTTAC+AGG | + | chr1_4:51002656-51002675 | None:intergenic | 20.0% |
| !! | AAAAAAAATAATTTGAGGGT+TGG | + | chr1_4:51003131-51003150 | None:intergenic | 20.0% |
| !! | TTCAAAATGCAAAAACAATA+GGG | + | chr1_4:51003163-51003182 | None:intergenic | 20.0% |
| !! | GCAAAAAAAATAAAATTAGG+AGG | + | chr1_4:51003186-51003205 | None:intergenic | 20.0% |
| !! | GGTGCAAAAAAAATAAAATT+AGG | + | chr1_4:51003189-51003208 | None:intergenic | 20.0% |
| !! | TTTATATAGTCAAAATTGAG+TGG | - | chr1_4:51003375-51003394 | Msa0168410:intron | 20.0% |
| !! | TCATTAGTGTAATAACAAAA+CGG | + | chr1_4:51003401-51003420 | None:intergenic | 20.0% |
| !! | TATTACACTAATGAATTCTA+TGG | - | chr1_4:51003407-51003426 | Msa0168410:intron | 20.0% |
| !!! | AAAAATTTCTTTTCTGAACA+AGG | - | chr1_4:51004462-51004481 | Msa0168410:intron | 20.0% |
| !!! | TTTTATTTTTTAATGGCAGT+TGG | + | chr1_4:51005104-51005123 | None:intergenic | 20.0% |
| !!! | AGAATTATCTGAAATTATGA+TGG | - | chr1_4:51005423-51005442 | Msa0168410:intron | 20.0% |
| !! | AAGAGATATTAAAACAGTAT+TGG | + | chr1_4:51005708-51005727 | None:intergenic | 20.0% |
| !!! | ATTTTCTCATTAATGCAAAT+GGG | + | chr1_4:51005777-51005796 | None:intergenic | 20.0% |
| !!! | AATTTTCTCATTAATGCAAA+TGG | + | chr1_4:51005778-51005797 | None:intergenic | 20.0% |
| !!! | CTGAAAAGGTTTTTATTTTT+TGG | + | chr1_4:51005809-51005828 | None:intergenic | 20.0% |
| !! | TTTGTAGAACCAAAATTTAT+GGG | + | chr1_4:51006536-51006555 | None:intergenic | 20.0% |
| !! | ATTTGTAGAACCAAAATTTA+TGG | + | chr1_4:51006537-51006556 | None:intergenic | 20.0% |
| !!! | TAAATTTTGGTTCTACAAAT+AGG | - | chr1_4:51006537-51006556 | Msa0168410:CDS | 20.0% |
| ! | CAAACAACAAACTTACTATA+AGG | - | chr1_4:51002158-51002177 | Msa0168410:intron | 25.0% |
| !! | AATGTAAAGTGAGTATTGTT+TGG | - | chr1_4:51002466-51002485 | Msa0168410:intron | 25.0% |
| ! | AGAAAAAGCTCAAAGTTATA+TGG | + | chr1_4:51002731-51002750 | None:intergenic | 25.0% |
| ! | AGAATTAACTCCAAATACAA+TGG | + | chr1_4:51003015-51003034 | None:intergenic | 25.0% |
| ! | GTTCAAAATGCAAAAACAAT+AGG | + | chr1_4:51003164-51003183 | None:intergenic | 25.0% |
| !!! | TGATTTTTTTGGATATGCAA+TGG | - | chr1_4:51003348-51003367 | Msa0168410:intron | 25.0% |
| ! | AGACATTTGTAAAGTATGTT+TGG | - | chr1_4:51003837-51003856 | Msa0168410:intron | 25.0% |
| ! | TAAAAAAGAAATGGAGGAAA+CGG | + | chr1_4:51004739-51004758 | None:intergenic | 25.0% |
| ! | TTCAGTGCATAAAAAAGAAA+TGG | + | chr1_4:51004748-51004767 | None:intergenic | 25.0% |
| !!! | TTTTTTATGCACTGAAGTTT+AGG | - | chr1_4:51004752-51004771 | Msa0168410:intron | 25.0% |
| ! | AATTTATAGTTCTTCACGTT+TGG | - | chr1_4:51004865-51004884 | Msa0168410:intron | 25.0% |
| !!! | TCATTTCTAGAATGGTAAAA+AGG | + | chr1_4:51005147-51005166 | None:intergenic | 25.0% |
| ! | CATAAGTGGTTTATAGATTT+GGG | + | chr1_4:51005195-51005214 | None:intergenic | 25.0% |
| !!! | TATATGATTTGTTCTGAACA+TGG | + | chr1_4:51005293-51005312 | None:intergenic | 25.0% |
| ! | GAAAAGCTTACGATAATAAT+AGG | - | chr1_4:51005473-51005492 | Msa0168410:intron | 25.0% |
| ! | TATCTATTTGAAAAGACCTT+AGG | - | chr1_4:51005595-51005614 | Msa0168410:CDS | 25.0% |
| ! | ATCTATTTGAAAAGACCTTA+GGG | - | chr1_4:51005596-51005615 | Msa0168410:CDS | 25.0% |
| ! | TGTCTACTACAAAATTAGAT+GGG | - | chr1_4:51005627-51005646 | Msa0168410:CDS | 25.0% |
| !!! | ACTGTTTTAATATCTCTTTC+TGG | - | chr1_4:51005710-51005729 | Msa0168410:intron | 25.0% |
| !! | TTTTCTCATTAATGCAAATG+GGG | + | chr1_4:51005776-51005795 | None:intergenic | 25.0% |
| !! | ATAAAAACCTTTTCAGAACA+AGG | - | chr1_4:51005813-51005832 | Msa0168410:intron | 25.0% |
| ! | TATTCATCAGTGGTTATAAA+CGG | + | chr1_4:51006153-51006172 | None:intergenic | 25.0% |
| ! | AACAAAATCTTATTCATCAG+TGG | + | chr1_4:51006163-51006182 | None:intergenic | 25.0% |
| ! | TTGAAATGGAACATTACATT+GGG | + | chr1_4:51006481-51006500 | None:intergenic | 25.0% |
| ! | CAGATATTGATACTTTAATC+TGG | - | chr1_4:51006660-51006679 | Msa0168410:CDS | 25.0% |
| TGAATTTGGGGATGAAATTA+GGG | + | chr1_4:51001765-51001784 | None:intergenic | 30.0% | |
| TTGAATTTGGGGATGAAATT+AGG | + | chr1_4:51001766-51001785 | None:intergenic | 30.0% | |
| AAAATGGGAGTTTGAATTTG+GGG | + | chr1_4:51001777-51001796 | None:intergenic | 30.0% | |
| GAAAATGGGAGTTTGAATTT+GGG | + | chr1_4:51001778-51001797 | None:intergenic | 30.0% | |
| AAGTTGAAATTTCTGTGGAT+TGG | + | chr1_4:51001820-51001839 | None:intergenic | 30.0% | |
| !! | ACTTCAAGTTGAAATTTCTG+TGG | + | chr1_4:51001825-51001844 | None:intergenic | 30.0% |
| AACGAAACCGATTAAATTGA+CGG | + | chr1_4:51001929-51001948 | None:intergenic | 30.0% | |
| ! | GTGGATTCATTTGACATTTT+GGG | - | chr1_4:51002038-51002057 | Msa0168410:CDS | 30.0% |
| AATTGAATGTCAATGTGTTG+TGG | - | chr1_4:51002253-51002272 | Msa0168410:intron | 30.0% | |
| !!! | TGTGTTGTGGTTTTTTGTTT+AGG | - | chr1_4:51002266-51002285 | Msa0168410:intron | 30.0% |
| TTCATTATGTCTGATGACAA+TGG | - | chr1_4:51002360-51002379 | Msa0168410:intron | 30.0% | |
| ! | TGAGTTGAACAATAAATCTG+AGG | - | chr1_4:51002503-51002522 | Msa0168410:intron | 30.0% |
| CTTCAAATTATCAATTCTGG+AGG | - | chr1_4:51002565-51002584 | Msa0168410:intron | 30.0% | |
| ATTTGAACAGAATTTACCAG+TGG | - | chr1_4:51002661-51002680 | Msa0168410:intron | 30.0% | |
| ATGTAGTATCTACCTTTATC+TGG | - | chr1_4:51002692-51002711 | Msa0168410:intron | 30.0% | |
| TGTAGTATCTACCTTTATCT+GGG | - | chr1_4:51002693-51002712 | Msa0168410:intron | 30.0% | |
| !! | GCTTTTTCTGTTATTGTTTC+AGG | - | chr1_4:51002742-51002761 | Msa0168410:intron | 30.0% |
| TGTTAACATGCCATTGTATT+TGG | - | chr1_4:51003002-51003021 | Msa0168410:intron | 30.0% | |
| GAATGAAGAGAAAGTTGTTT+GGG | + | chr1_4:51003225-51003244 | None:intergenic | 30.0% | |
| TGAATGAAGAGAAAGTTGTT+TGG | + | chr1_4:51003226-51003245 | None:intergenic | 30.0% | |
| TCTCTAACCTATATGCAATT+TGG | - | chr1_4:51003264-51003283 | Msa0168410:intron | 30.0% | |
| CTCTAACCTATATGCAATTT+GGG | - | chr1_4:51003265-51003284 | Msa0168410:intron | 30.0% | |
| TCTAACCTATATGCAATTTG+GGG | - | chr1_4:51003266-51003285 | Msa0168410:intron | 30.0% | |
| GATACATTCTTGATACTTAG+TGG | + | chr1_4:51003464-51003483 | None:intergenic | 30.0% | |
| AAGTATCAAGAATGTATCGT+AGG | - | chr1_4:51003466-51003485 | Msa0168410:intron | 30.0% | |
| AGTATCAAGAATGTATCGTA+GGG | - | chr1_4:51003467-51003486 | Msa0168410:intron | 30.0% | |
| ! | TCATAAACTTGCTTCAAACA+AGG | + | chr1_4:51003509-51003528 | None:intergenic | 30.0% |
| TGCAATCTTTATCTGATTCT+TGG | - | chr1_4:51003539-51003558 | Msa0168410:intron | 30.0% | |
| TTTGTTTGTATGATATGTGC+TGG | - | chr1_4:51003583-51003602 | Msa0168410:intron | 30.0% | |
| AATTAACACGAAACTCCATA+GGG | - | chr1_4:51003631-51003650 | Msa0168410:intron | 30.0% | |
| TATACCAAGAGATATGTGTT+CGG | - | chr1_4:51003759-51003778 | Msa0168410:intron | 30.0% | |
| ! | TTTAGAACATTAAACCTCGT+AGG | - | chr1_4:51003814-51003833 | Msa0168410:intron | 30.0% |
| TCAGTGCATGAAAAATGAAA+TGG | + | chr1_4:51004053-51004072 | None:intergenic | 30.0% | |
| ! | TTTTTCATGCACTGAAGTTT+AGG | - | chr1_4:51004058-51004077 | Msa0168410:intron | 30.0% |
| !! | ATCCATTAAGGATTAGTTTC+TGG | - | chr1_4:51004165-51004184 | Msa0168410:intron | 30.0% |
| AAAGTTCTCATTAATGCAGA+AGG | + | chr1_4:51004425-51004444 | None:intergenic | 30.0% | |
| ! | TCTTAATGGAAAAGGTACAA+AGG | + | chr1_4:51004525-51004544 | None:intergenic | 30.0% |
| ! | TAGCTGACTCAATATAATAC+AGG | + | chr1_4:51004615-51004634 | None:intergenic | 30.0% |
| AGTGCATAAAAAAGAAATGG+AGG | + | chr1_4:51004745-51004764 | None:intergenic | 30.0% | |
| ATTGTGAAATAGTTGAGATG+CGG | - | chr1_4:51004937-51004956 | Msa0168410:intron | 30.0% | |
| ! | GGGTGTATATGTTGTTTAAT+AGG | + | chr1_4:51005033-51005052 | None:intergenic | 30.0% |
| !!! | ATTTTTTAATGGCAGTTGGA+TGG | + | chr1_4:51005100-51005119 | None:intergenic | 30.0% |
| ! | CCTAAGTATCATTTCTAGAA+TGG | + | chr1_4:51005155-51005174 | None:intergenic | 30.0% |
| ! | CCATTCTAGAAATGATACTT+AGG | - | chr1_4:51005152-51005171 | Msa0168410:intron | 30.0% |
| ! | GAAATGATACTTAGGCTTTT+CGG | - | chr1_4:51005160-51005179 | Msa0168410:intron | 30.0% |
| CCATAAGTGGTTTATAGATT+TGG | + | chr1_4:51005196-51005215 | None:intergenic | 30.0% | |
| CCAAATCTATAAACCACTTA+TGG | - | chr1_4:51005193-51005212 | Msa0168410:intron | 30.0% | |
| ! | CATTGGGTTTCAAGTATTAT+CGG | - | chr1_4:51005237-51005256 | Msa0168410:intron | 30.0% |
| AGCTTCAATAGAATAGCTAA+CGG | - | chr1_4:51005536-51005555 | Msa0168410:intron | 30.0% | |
| ! | GTTAATTAGGTGTTAAGTTG+AGG | - | chr1_4:51005561-51005580 | Msa0168410:CDS | 30.0% |
| TCTATTTGAAAAGACCTTAG+GGG | - | chr1_4:51005597-51005616 | Msa0168410:CDS | 30.0% | |
| GTGTCTACTACAAAATTAGA+TGG | - | chr1_4:51005626-51005645 | Msa0168410:CDS | 30.0% | |
| !! | AAAAGAACCTTGTTCTGAAA+AGG | + | chr1_4:51005823-51005842 | None:intergenic | 30.0% |
| !!! | GGTTCTTTTGATTTCATTCT+TGG | - | chr1_4:51005834-51005853 | Msa0168410:intron | 30.0% |
| TTGTCAATAAAACTGTGCTT+TGG | - | chr1_4:51005862-51005881 | Msa0168410:intron | 30.0% | |
| AAAGCACATATCAAAAGTGA+AGG | - | chr1_4:51005918-51005937 | Msa0168410:intron | 30.0% | |
| TAATGCAAGCTGCAAAATAT+TGG | + | chr1_4:51005952-51005971 | None:intergenic | 30.0% | |
| TTTGCAGCTTGCATTATATT+TGG | - | chr1_4:51005956-51005975 | Msa0168410:intron | 30.0% | |
| CTTGCATTATATTTGGTCAA+TGG | - | chr1_4:51005963-51005982 | Msa0168410:intron | 30.0% | |
| ATCCAATATTATCGTTACCT+TGG | - | chr1_4:51006067-51006086 | Msa0168410:intron | 30.0% | |
| TTTCTTTATCTGGATCAACA+TGG | - | chr1_4:51006091-51006110 | Msa0168410:intron | 30.0% | |
| CATGTCTAATATTTCCAGTT+GGG | + | chr1_4:51006362-51006381 | None:intergenic | 30.0% | |
| TCATGTCTAATATTTCCAGT+TGG | + | chr1_4:51006363-51006382 | None:intergenic | 30.0% | |
| AACTGGAAATATTAGACATG+AGG | - | chr1_4:51006362-51006381 | Msa0168410:CDS | 30.0% | |
| GAAATATTAGACATGAGGAT+GGG | - | chr1_4:51006367-51006386 | Msa0168410:CDS | 30.0% | |
| AAATATTAGACATGAGGATG+GGG | - | chr1_4:51006368-51006387 | Msa0168410:CDS | 30.0% | |
| GTTGAAATGGAACATTACAT+TGG | + | chr1_4:51006482-51006501 | None:intergenic | 30.0% | |
| ! | AAGAAGTTTCTAGGTTGAAA+TGG | + | chr1_4:51006495-51006514 | None:intergenic | 30.0% |
| ! | TGCATTTTGCCCATAAATTT+TGG | - | chr1_4:51006524-51006543 | Msa0168410:CDS | 30.0% |
| TCCAGCAAAATTACAATGAA+CGG | + | chr1_4:51006711-51006730 | None:intergenic | 30.0% | |
| ! | TAATTTTGCTGGAGAAGAAT+TGG | - | chr1_4:51006718-51006737 | Msa0168410:exon | 30.0% |
| GAGAAGAATTGGTGAAAATT+TGG | - | chr1_4:51006729-51006748 | Msa0168410:five_prime_UTR | 30.0% | |
| GGAAAATGGGAGTTTGAATT+TGG | + | chr1_4:51001779-51001798 | None:intergenic | 35.0% | |
| !! | AAGAGAGTGTTGTGGAAAAT+GGG | + | chr1_4:51001792-51001811 | None:intergenic | 35.0% |
| !! | GAAATTTCTGTGGATTGGTT+TGG | + | chr1_4:51001815-51001834 | None:intergenic | 35.0% |
| TCCAATTCCATCACCAATAA+TGG | - | chr1_4:51001847-51001866 | Msa0168410:three_prime_UTR | 35.0% | |
| !! | TCCATTATTGGTGATGGAAT+TGG | + | chr1_4:51001851-51001870 | None:intergenic | 35.0% |
| ATGAAATTTCAGGGGGTTTA+GGG | + | chr1_4:51001885-51001904 | None:intergenic | 35.0% | |
| TTGTTCCATGAAATTTCAGG+GGG | + | chr1_4:51001892-51001911 | None:intergenic | 35.0% | |
| CTTGTTCCATGAAATTTCAG+GGG | + | chr1_4:51001893-51001912 | None:intergenic | 35.0% | |
| CCTTGTTCCATGAAATTTCA+GGG | + | chr1_4:51001894-51001913 | None:intergenic | 35.0% | |
| TCCTTGTTCCATGAAATTTC+AGG | + | chr1_4:51001895-51001914 | None:intergenic | 35.0% | |
| AGCAACTCCGTCAATTTAAT+CGG | - | chr1_4:51001919-51001938 | Msa0168410:three_prime_UTR | 35.0% | |
| ! | CGTGGATTCATTTGACATTT+TGG | - | chr1_4:51002037-51002056 | Msa0168410:CDS | 35.0% |
| !! | ATCAGATTCATGTTTCTGGT+CGG | - | chr1_4:51002103-51002122 | Msa0168410:CDS | 35.0% |
| !! | GATACTGTTGATTCTGTTGA+TGG | - | chr1_4:51002135-51002154 | Msa0168410:intron | 35.0% |
| AGCAGCTGAATTTCATTGAT+AGG | - | chr1_4:51002298-51002317 | Msa0168410:intron | 35.0% | |
| AGGCTAAAAATCAACTGTAG+AGG | - | chr1_4:51002523-51002542 | Msa0168410:intron | 35.0% | |
| TACTACATACTACAATCCAC+TGG | + | chr1_4:51002680-51002699 | None:intergenic | 35.0% | |
| AAAAAGCGAAACCCAGATAA+AGG | + | chr1_4:51002707-51002726 | None:intergenic | 35.0% | |
| TGTTATTGTTTCAGGCAAGA+AGG | - | chr1_4:51002750-51002769 | Msa0168410:intron | 35.0% | |
| !! | GAGAAAGTTGTTTGGGTTTT+TGG | + | chr1_4:51003218-51003237 | None:intergenic | 35.0% |
| CACAACACAGACATATCATT+AGG | + | chr1_4:51003293-51003312 | None:intergenic | 35.0% | |
| TATGATATGTGCTGGAAACA+TGG | - | chr1_4:51003591-51003610 | Msa0168410:intron | 35.0% | |
| TGGAGTTTCGTGTTAATTGA+AGG | + | chr1_4:51003629-51003648 | None:intergenic | 35.0% | |
| CAATTAACACGAAACTCCAT+AGG | - | chr1_4:51003630-51003649 | Msa0168410:intron | 35.0% | |
| CACAATCTTCATAGCAAAAG+AGG | + | chr1_4:51003658-51003677 | None:intergenic | 35.0% | |
| GTGCATGAAAAATGAAATGG+AGG | + | chr1_4:51004050-51004069 | None:intergenic | 35.0% | |
| ! | ATGCACTGAAGTTTAGGATT+AGG | - | chr1_4:51004064-51004083 | Msa0168410:intron | 35.0% |
| ! | TGAAGTTTAGGATTAGGAAG+AGG | - | chr1_4:51004070-51004089 | Msa0168410:intron | 35.0% |
| ! | GAAGTTTAGGATTAGGAAGA+GGG | - | chr1_4:51004071-51004090 | Msa0168410:intron | 35.0% |
| CTCCAGAAACTAATCCTTAA+TGG | + | chr1_4:51004170-51004189 | None:intergenic | 35.0% | |
| ! | TCTGAACAAGGTTTTTACGT+CGG | - | chr1_4:51004474-51004493 | Msa0168410:intron | 35.0% |
| TATTGGAATTGTTCCCTTCA+CGG | + | chr1_4:51004584-51004603 | None:intergenic | 35.0% | |
| TAATACAGGCAGCAAGATAT+TGG | + | chr1_4:51004601-51004620 | None:intergenic | 35.0% | |
| CCAAAGGATGAGATTTATGT+CGG | - | chr1_4:51004812-51004831 | Msa0168410:intron | 35.0% | |
| ! | TGTTGTTTAATAGGACCTCA+GGG | + | chr1_4:51005024-51005043 | None:intergenic | 35.0% |
| ! | ATGTTGTTTAATAGGACCTC+AGG | + | chr1_4:51005025-51005044 | None:intergenic | 35.0% |
| TTGGATGGAATTTAACAGCA+GGG | + | chr1_4:51005085-51005104 | None:intergenic | 35.0% | |
| AAGTGGTTTATAGATTTGGG+TGG | + | chr1_4:51005192-51005211 | None:intergenic | 35.0% | |
| TACTTGAAACCCAATGCTAT+GGG | + | chr1_4:51005233-51005252 | None:intergenic | 35.0% | |
| ATACTTGAAACCCAATGCTA+TGG | + | chr1_4:51005234-51005253 | None:intergenic | 35.0% | |
| GAATATTCAGTGTTCGTCAA+TGG | - | chr1_4:51005495-51005514 | Msa0168410:intron | 35.0% | |
| GCTTCAATAGAATAGCTAAC+GGG | - | chr1_4:51005537-51005556 | Msa0168410:intron | 35.0% | |
| CTTCAATAGAATAGCTAACG+GGG | - | chr1_4:51005538-51005557 | Msa0168410:intron | 35.0% | |
| TTCAATAGAATAGCTAACGG+GGG | - | chr1_4:51005539-51005558 | Msa0168410:intron | 35.0% | |
| !! | AATTAGGTGTTAAGTTGAGG+AGG | - | chr1_4:51005564-51005583 | Msa0168410:CDS | 35.0% |
| !! | ATTAGGTGTTAAGTTGAGGA+GGG | - | chr1_4:51005565-51005584 | Msa0168410:CDS | 35.0% |
| ! | ATGGGTTGTTTATACCTCAA+GGG | - | chr1_4:51005645-51005664 | Msa0168410:intron | 35.0% |
| AAAACTGTGCTTTGGTACAT+TGG | - | chr1_4:51005870-51005889 | Msa0168410:intron | 35.0% | |
| AGCCAAGGTAACGATAATAT+TGG | + | chr1_4:51006072-51006091 | None:intergenic | 35.0% | |
| ! | TTACCTTGGCTTTCTTTATC+TGG | - | chr1_4:51006081-51006100 | Msa0168410:intron | 35.0% |
| GTTATAAACGGAGTTAGACA+TGG | + | chr1_4:51006141-51006160 | None:intergenic | 35.0% | |
| TGCTTAAAATCAGGAGCTTT+GGG | + | chr1_4:51006280-51006299 | None:intergenic | 35.0% | |
| GTATCCTTGTGCTTAAAATC+AGG | + | chr1_4:51006289-51006308 | None:intergenic | 35.0% | |
| ! | GATTTTAAGCACAAGGATAC+TGG | - | chr1_4:51006289-51006308 | Msa0168410:CDS | 35.0% |
| GGAAATATTAGACATGAGGA+TGG | - | chr1_4:51006366-51006385 | Msa0168410:CDS | 35.0% | |
| AACTGCACAAAGAAGTTTCT+AGG | + | chr1_4:51006504-51006523 | None:intergenic | 35.0% | |
| GGAACATTGTTTATAGTCTC+TGG | - | chr1_4:51006558-51006577 | Msa0168410:CDS | 35.0% | |
| ! | TCTAGTCTATTTTATCAGCC+TGG | - | chr1_4:51006601-51006620 | Msa0168410:CDS | 35.0% |
| AATTCTAAACAATGGTAGCC+AGG | + | chr1_4:51006622-51006641 | None:intergenic | 35.0% | |
| CAAAATTACAATGAACGGGT+AGG | + | chr1_4:51006706-51006725 | None:intergenic | 35.0% | |
| CCAGCAAAATTACAATGAAC+GGG | + | chr1_4:51006710-51006729 | None:intergenic | 35.0% | |
| TCGTTTCACTCGATGATAAG+GGG | + | chr1_4:51001663-51001682 | None:intergenic | 40.0% | |
| GTCGTTTCACTCGATGATAA+GGG | + | chr1_4:51001664-51001683 | None:intergenic | 40.0% | |
| ! | TGTCGTTTCACTCGATGATA+AGG | + | chr1_4:51001665-51001684 | None:intergenic | 40.0% |
| TGAAACGACAACAGCAGAAA+TGG | - | chr1_4:51001675-51001694 | Msa0168410:three_prime_UTR | 40.0% | |
| !! | GGATGAAATTAGGGTTTTGG+GGG | + | chr1_4:51001756-51001775 | None:intergenic | 40.0% |
| ! | GGGATGAAATTAGGGTTTTG+GGG | + | chr1_4:51001757-51001776 | None:intergenic | 40.0% |
| ! | GGGGATGAAATTAGGGTTTT+GGG | + | chr1_4:51001758-51001777 | None:intergenic | 40.0% |
| ! | TGGGGATGAAATTAGGGTTT+TGG | + | chr1_4:51001759-51001778 | None:intergenic | 40.0% |
| !! | GAAGAGAGTGTTGTGGAAAA+TGG | + | chr1_4:51001793-51001812 | None:intergenic | 40.0% |
| GTATGATGCTGCTCCATTAT+TGG | + | chr1_4:51001863-51001882 | None:intergenic | 40.0% | |
| CATGAAATTTCAGGGGGTTT+AGG | + | chr1_4:51001886-51001905 | None:intergenic | 40.0% | |
| CTAAACCCCCTGAAATTTCA+TGG | - | chr1_4:51001884-51001903 | Msa0168410:three_prime_UTR | 40.0% | |
| CCCTGAAATTTCATGGAACA+AGG | - | chr1_4:51001891-51001910 | Msa0168410:three_prime_UTR | 40.0% | |
| TTAAATTGACGGAGTTGCTG+AGG | + | chr1_4:51001918-51001937 | None:intergenic | 40.0% | |
| !! | GAAGGTGTTTGATTTCGATG+GGG | + | chr1_4:51001957-51001976 | None:intergenic | 40.0% |
| !! | GGAAGGTGTTTGATTTCGAT+GGG | + | chr1_4:51001958-51001977 | None:intergenic | 40.0% |
| !! | AGGAAGGTGTTTGATTTCGA+TGG | + | chr1_4:51001959-51001978 | None:intergenic | 40.0% |
| GAAATCAAACACCTTCCTTC+CGG | - | chr1_4:51001961-51001980 | Msa0168410:CDS | 40.0% | |
| AAATCAAACACCTTCCTTCC+GGG | - | chr1_4:51001962-51001981 | Msa0168410:CDS | 40.0% | |
| !! | TTGCGAAGCGTTTTTCTTGA+CGG | + | chr1_4:51002013-51002032 | None:intergenic | 40.0% |
| GGTCATCAGATTCATGTTTC+TGG | - | chr1_4:51002099-51002118 | Msa0168410:CDS | 40.0% | |
| AAGGCGAGTTATGCTTCAAA+TGG | - | chr1_4:51002769-51002788 | Msa0168410:intron | 40.0% | |
| TATGCTTCAAATGGTACGAC+TGG | - | chr1_4:51002778-51002797 | Msa0168410:intron | 40.0% | |
| !! | TCTACTAGCCTTTCAATCAG+TGG | - | chr1_4:51003073-51003092 | Msa0168410:intron | 40.0% |
| TAGGACCCCAAATTGCATAT+AGG | + | chr1_4:51003274-51003293 | None:intergenic | 40.0% | |
| CTTTACAAATGTCTCCTACG+AGG | + | chr1_4:51003831-51003850 | None:intergenic | 40.0% | |
| GAGGAAATCATTGAAAGCAG+TGG | + | chr1_4:51004031-51004050 | None:intergenic | 40.0% | |
| ! | TTTAGGATTAGGAAGAGGGT+AGG | - | chr1_4:51004075-51004094 | Msa0168410:intron | 40.0% |
| AAGTCCTAAGCCTAGAAATC+GGG | + | chr1_4:51004104-51004123 | None:intergenic | 40.0% | |
| CAAGTCCTAAGCCTAGAAAT+CGG | + | chr1_4:51004105-51004124 | None:intergenic | 40.0% | |
| CCACAGTACAAGGTTTATGT+CGG | - | chr1_4:51004127-51004146 | Msa0168410:intron | 40.0% | |
| ! | GCTAAGCTTTATGTTTGCAG+AGG | - | chr1_4:51004196-51004215 | Msa0168410:intron | 40.0% |
| ! | CAGCTGACTCTTAATGGAAA+AGG | + | chr1_4:51004533-51004552 | None:intergenic | 40.0% |
| ! | TACAGTCAGCTGACTCTTAA+TGG | + | chr1_4:51004539-51004558 | None:intergenic | 40.0% |
| AAAGCACATATCAACCGTGA+AGG | - | chr1_4:51004567-51004586 | Msa0168410:intron | 40.0% | |
| AAGCACATATCAACCGTGAA+GGG | - | chr1_4:51004568-51004587 | Msa0168410:intron | 40.0% | |
| AATGGAGGAAACGGCAATAT+TGG | + | chr1_4:51004730-51004749 | None:intergenic | 40.0% | |
| ! | TGCACTGAAGTTTAGGACAA+TGG | - | chr1_4:51004759-51004778 | Msa0168410:intron | 40.0% |
| ! | CTGAAGTTTAGGACAATGGT+AGG | - | chr1_4:51004763-51004782 | Msa0168410:intron | 40.0% |
| TGGTAGGTTTCCCTATTACA+AGG | - | chr1_4:51004779-51004798 | Msa0168410:intron | 40.0% | |
| AGGTTTCCCTATTACAAGGT+TGG | - | chr1_4:51004783-51004802 | Msa0168410:intron | 40.0% | |
| GGTTTCCCTATTACAAGGTT+GGG | - | chr1_4:51004784-51004803 | Msa0168410:intron | 40.0% | |
| CAAGTCCCAACCTTGTAATA+GGG | + | chr1_4:51004792-51004811 | None:intergenic | 40.0% | |
| CCGACATAAATCTCATCCTT+TGG | + | chr1_4:51004815-51004834 | None:intergenic | 40.0% | |
| TGAAATAGTTGAGATGCGGA+AGG | - | chr1_4:51004941-51004960 | Msa0168410:intron | 40.0% | |
| GTTGTTTAATAGGACCTCAG+GGG | + | chr1_4:51005023-51005042 | None:intergenic | 40.0% | |
| TGTCTACTGTGAAAGTAGAG+GGG | + | chr1_4:51005054-51005073 | None:intergenic | 40.0% | |
| GTGTCTACTGTGAAAGTAGA+GGG | + | chr1_4:51005055-51005074 | None:intergenic | 40.0% | |
| TGTGTCTACTGTGAAAGTAG+AGG | + | chr1_4:51005056-51005075 | None:intergenic | 40.0% | |
| TGGATGGAATTTAACAGCAG+GGG | + | chr1_4:51005084-51005103 | None:intergenic | 40.0% | |
| GTTGGATGGAATTTAACAGC+AGG | + | chr1_4:51005086-51005105 | None:intergenic | 40.0% | |
| ! | CTTGTGCTCTTTTCCATAAG+TGG | + | chr1_4:51005209-51005228 | None:intergenic | 40.0% |
| TGGTGTCTTCATTCGTTATG+TGG | + | chr1_4:51005273-51005292 | None:intergenic | 40.0% | |
| TAGTGTTTGCATGAGACATC+TGG | - | chr1_4:51005349-51005368 | Msa0168410:intron | 40.0% | |
| AGTGTTTGCATGAGACATCT+GGG | - | chr1_4:51005350-51005369 | Msa0168410:intron | 40.0% | |
| AGTGTTCGTCAATGGAAAAC+TGG | - | chr1_4:51005503-51005522 | Msa0168410:intron | 40.0% | |
| ATAGCTAACGGGGGTTAATT+AGG | - | chr1_4:51005548-51005567 | Msa0168410:CDS | 40.0% | |
| !! | GATGGGTTGTTTATACCTCA+AGG | - | chr1_4:51005644-51005663 | Msa0168410:intron | 40.0% |
| GTACATTGGCCAATAAGAAC+TGG | - | chr1_4:51005884-51005903 | Msa0168410:intron | 40.0% | |
| TGCAAGTAGCCAGTTCTTAT+TGG | + | chr1_4:51005896-51005915 | None:intergenic | 40.0% | |
| GATCCAGATAAAGAAAGCCA+AGG | + | chr1_4:51006087-51006106 | None:intergenic | 40.0% | |
| TGCGTCTTCACAAACATTTC+TGG | - | chr1_4:51006237-51006256 | Msa0168410:CDS | 40.0% | |
| !! | CATTTCTGGTAACTTCACAG+AGG | - | chr1_4:51006251-51006270 | Msa0168410:CDS | 40.0% |
| GCTTAAAATCAGGAGCTTTG+GGG | + | chr1_4:51006279-51006298 | None:intergenic | 40.0% | |
| GTGCTTAAAATCAGGAGCTT+TGG | + | chr1_4:51006281-51006300 | None:intergenic | 40.0% | |
| ! | AGCTCCTGATTTTAAGCACA+AGG | - | chr1_4:51006282-51006301 | Msa0168410:CDS | 40.0% |
| CTTATACCGGTCAAAATGGT+AGG | - | chr1_4:51006392-51006411 | Msa0168410:CDS | 40.0% | |
| ACATTACATTGGGCAAGGTT+TGG | + | chr1_4:51006471-51006490 | None:intergenic | 40.0% | |
| ATGGAACATTACATTGGGCA+AGG | + | chr1_4:51006476-51006495 | None:intergenic | 40.0% | |
| ! | CCCGTTCATTGTAATTTTGC+TGG | - | chr1_4:51006707-51006726 | Msa0168410:exon | 40.0% |
| ACTCGATGATAAGGGGGAAT+TGG | + | chr1_4:51001656-51001675 | None:intergenic | 45.0% | |
| CGTTTCACTCGATGATAAGG+GGG | + | chr1_4:51001662-51001681 | None:intergenic | 45.0% | |
| !!! | ATTAGGGTTTTGGGGGAAAG+TGG | + | chr1_4:51001749-51001768 | None:intergenic | 45.0% |
| !! | TGGTTTGGAAGAGAGTGTTG+TGG | + | chr1_4:51001800-51001819 | None:intergenic | 45.0% |
| TGCTGCTCCATTATTGGTGA+TGG | + | chr1_4:51001857-51001876 | None:intergenic | 45.0% | |
| AGTCCAAGCAACAACTTTCC+CGG | + | chr1_4:51001983-51002002 | None:intergenic | 45.0% | |
| AAAACGCTTCGCAAATGTCG+TGG | - | chr1_4:51002019-51002038 | Msa0168410:CDS | 45.0% | |
| GCTTCTCAGCATGTTCAGAA+AGG | - | chr1_4:51002078-51002097 | Msa0168410:CDS | 45.0% | |
| !! | AAATGGTACGACTGGTTCTG+TGG | - | chr1_4:51002786-51002805 | Msa0168410:intron | 45.0% |
| !! | CTGGTTCTGTGGTGGAATTA+TGG | - | chr1_4:51002797-51002816 | Msa0168410:intron | 45.0% |
| AAGCTTTCTTTGCCAACCCA+GGG | - | chr1_4:51002821-51002840 | Msa0168410:intron | 45.0% | |
| ! | TAGTAGAAAGAGCGTGGTTG+AGG | + | chr1_4:51003060-51003079 | None:intergenic | 45.0% |
| AAAGGCTAGTAGAAAGAGCG+TGG | + | chr1_4:51003066-51003085 | None:intergenic | 45.0% | |
| !! | ACTAGCCTTTCAATCAGTGG+CGG | - | chr1_4:51003076-51003095 | Msa0168410:intron | 45.0% |
| !!! | TGTTTGGGTTTTTGGCTAGC+TGG | + | chr1_4:51003210-51003229 | None:intergenic | 45.0% |
| CATAGCAAAAGAGGTCCCTA+TGG | + | chr1_4:51003649-51003668 | None:intergenic | 45.0% | |
| GTTGCCGAACACATATCTCT+TGG | + | chr1_4:51003766-51003785 | None:intergenic | 45.0% | |
| CCGACATAAACCTTGTACTG+TGG | + | chr1_4:51004130-51004149 | None:intergenic | 45.0% | |
| GAGTATGCAGTATGCCAACA+GGG | + | chr1_4:51004403-51004422 | None:intergenic | 45.0% | |
| GCAAGTCCCAACCTTGTAAT+AGG | + | chr1_4:51004793-51004812 | None:intergenic | 45.0% | |
| !! | AATTACACTGACTTCCCCTG+AGG | - | chr1_4:51005006-51005025 | Msa0168410:intron | 45.0% |
| GTCTACTGTGAAAGTAGAGG+GGG | + | chr1_4:51005053-51005072 | None:intergenic | 45.0% | |
| AGCACAAGACCCATAGCATT+GGG | - | chr1_4:51005221-51005240 | Msa0168410:intron | 45.0% | |
| GTAGACACTAATCTCCCCTA+AGG | + | chr1_4:51005614-51005633 | None:intergenic | 45.0% | |
| GGTTGTTTATACCTCAAGGG+AGG | - | chr1_4:51005648-51005667 | Msa0168410:intron | 45.0% | |
| AATTACACTGACCTCCCTTG+AGG | + | chr1_4:51005662-51005681 | None:intergenic | 45.0% | |
| ! | ATGAGGATGGGGTCTTATAC+CGG | - | chr1_4:51006379-51006398 | Msa0168410:CDS | 45.0% |
| ! | GGGTCTTATACCGGTCAAAA+TGG | - | chr1_4:51006388-51006407 | Msa0168410:CDS | 45.0% |
| ATCTGCGCTCACCATATCTA+CGG | + | chr1_4:51006422-51006441 | None:intergenic | 45.0% | |
| !! | TTGAATATAATATTATTATA+AGG | - | chr1_4:51003886-51003905 | Msa0168410:intron | 5.0% |
| !!! | TTTTTGTTTTTATTTTTTAA+TGG | + | chr1_4:51005111-51005130 | None:intergenic | 5.0% |
| CGATGATAAGGGGGAATTGG+CGG | + | chr1_4:51001653-51001672 | None:intergenic | 50.0% | |
| CAACAACTTTCCCGGAAGGA+AGG | + | chr1_4:51001975-51001994 | None:intergenic | 50.0% | |
| CAAGCAACAACTTTCCCGGA+AGG | + | chr1_4:51001979-51001998 | None:intergenic | 50.0% | |
| CTTCCGGGAAAGTTGTTGCT+TGG | - | chr1_4:51001977-51001996 | Msa0168410:CDS | 50.0% | |
| TCTTGATCATGTGACCGCAC+CGG | + | chr1_4:51002333-51002352 | None:intergenic | 50.0% | |
| CAAGCTTTCTTTGCCAACCC+AGG | - | chr1_4:51002820-51002839 | Msa0168410:intron | 50.0% | |
| AGCTTTCTTTGCCAACCCAG+GGG | - | chr1_4:51002822-51002841 | Msa0168410:intron | 50.0% | |
| GTGGGACAATAGGAGGAACA+AGG | - | chr1_4:51002849-51002868 | Msa0168410:intron | 50.0% | |
| AAATCGAACCCCCTGATCCA+AGG | - | chr1_4:51003994-51004013 | Msa0168410:intron | 50.0% | |
| AATCGAACCCCCTGATCCAA+GGG | - | chr1_4:51003995-51004014 | Msa0168410:intron | 50.0% | |
| ! | GTTGCCCGATTTCTAGGCTT+AGG | - | chr1_4:51004097-51004116 | Msa0168410:intron | 50.0% |
| CAGTATGCCAACAGGGTTGA+CGG | + | chr1_4:51004396-51004415 | None:intergenic | 50.0% | |
| GGAGTATGCAGTATGCCAAC+AGG | + | chr1_4:51004404-51004423 | None:intergenic | 50.0% | |
| ACAAGGTTGGGACTTGCCAA+AGG | - | chr1_4:51004796-51004815 | Msa0168410:intron | 50.0% | |
| GAGCACAAGACCCATAGCAT+TGG | - | chr1_4:51005220-51005239 | Msa0168410:intron | 50.0% | |
| !! | AGGTGTTAAGTTGAGGAGGG+AGG | - | chr1_4:51005568-51005587 | Msa0168410:CDS | 50.0% |
| AGGATACTGGAGAAGCTCTG+TGG | - | chr1_4:51006302-51006321 | Msa0168410:CDS | 50.0% | |
| ! | GGAGAAGCTCTGTGGATTGA+TGG | - | chr1_4:51006310-51006329 | Msa0168410:CDS | 50.0% |
| ATGGTAGATCCACTCCACCA+TGG | - | chr1_4:51006329-51006348 | Msa0168410:CDS | 50.0% | |
| TGGTAGATCCACTCCACCAT+GGG | - | chr1_4:51006330-51006349 | Msa0168410:CDS | 50.0% | |
| AGTTGGGATTTGACCCATGG+TGG | + | chr1_4:51006346-51006365 | None:intergenic | 50.0% | |
| ACCATGGGTCAAATCCCAAC+TGG | - | chr1_4:51006345-51006364 | Msa0168410:CDS | 50.0% | |
| TCCAGTTGGGATTTGACCCA+TGG | + | chr1_4:51006349-51006368 | None:intergenic | 50.0% | |
| !! | GGGCATCCTACCATTTTGAC+CGG | + | chr1_4:51006401-51006420 | None:intergenic | 50.0% |
| TGGTAGGATGCCCGTAGATA+TGG | - | chr1_4:51006408-51006427 | Msa0168410:CDS | 50.0% | |
| TCTGCGCTCACCATATCTAC+GGG | + | chr1_4:51006421-51006440 | None:intergenic | 50.0% | |
| TGAACGGGTAGGATCACTCT+TGG | + | chr1_4:51006695-51006714 | None:intergenic | 50.0% | |
| !!! | GGTTTTGGGGGAAAGTGGTG+AGG | + | chr1_4:51001744-51001763 | None:intergenic | 55.0% |
| CATTGATAGGAGTGACGCGC+CGG | - | chr1_4:51002311-51002330 | Msa0168410:intron | 55.0% | |
| !! | TGGTACGACTGGTTCTGTGG+TGG | - | chr1_4:51002789-51002808 | Msa0168410:intron | 55.0% |
| TATTGTCCCACCACTCCCCT+GGG | + | chr1_4:51002840-51002859 | None:intergenic | 55.0% | |
| ! | TGGCTCCGCCACTGATTGAA+AGG | + | chr1_4:51003084-51003103 | None:intergenic | 55.0% |
| TGCATCCCCTCACCACAATG+TGG | + | chr1_4:51003104-51003123 | None:intergenic | 55.0% | |
| TTGAAAGCAGTGGCGTTGCC+AGG | + | chr1_4:51004021-51004040 | None:intergenic | 55.0% | |
| GGGTAGGTTGCCCGATTTCT+AGG | - | chr1_4:51004091-51004110 | Msa0168410:intron | 55.0% | |
| AGGACTTGCGCCACAGTACA+AGG | - | chr1_4:51004117-51004136 | Msa0168410:intron | 55.0% | |
| CAAACAGCCGTCAACCCTGT+TGG | - | chr1_4:51004386-51004405 | Msa0168410:intron | 55.0% | |
| ! | GGATTTGACCCATGGTGGAG+TGG | + | chr1_4:51006341-51006360 | None:intergenic | 55.0% |
| TCTTTGCCAACCCAGGGGAG+TGG | - | chr1_4:51002827-51002846 | Msa0168410:intron | 60.0% | |
| CTATTGTCCCACCACTCCCC+TGG | + | chr1_4:51002841-51002860 | None:intergenic | 60.0% | |
| ! | CAGGGGAGTGGTGGGACAAT+AGG | - | chr1_4:51002839-51002858 | Msa0168410:intron | 60.0% |
| ! | GGGAGTGGTGGGACAATAGG+AGG | - | chr1_4:51002842-51002861 | Msa0168410:intron | 60.0% |
| ! | TCAGTGGCGGAGCCACATTG+TGG | - | chr1_4:51003089-51003108 | Msa0168410:intron | 60.0% |
| GCGGAGCCACATTGTGGTGA+GGG | - | chr1_4:51003095-51003114 | Msa0168410:intron | 60.0% | |
| CGGAGCCACATTGTGGTGAG+GGG | - | chr1_4:51003096-51003115 | Msa0168410:intron | 60.0% | |
| TTGCCAGGCCCTTGGATCAG+GGG | + | chr1_4:51004006-51004025 | None:intergenic | 60.0% | |
| GTTGCCAGGCCCTTGGATCA+GGG | + | chr1_4:51004007-51004026 | None:intergenic | 60.0% | |
| ! | ATAGGAGTGACGCGCCGGTG+CGG | - | chr1_4:51002316-51002335 | Msa0168410:intron | 65.0% |
| TTGCCAACCCAGGGGAGTGG+TGG | - | chr1_4:51002830-51002849 | Msa0168410:intron | 65.0% | |
| TGCCAACCCAGGGGAGTGGT+GGG | - | chr1_4:51002831-51002850 | Msa0168410:intron | 65.0% | |
| GGCGGAGCCACATTGTGGTG+AGG | - | chr1_4:51003094-51003113 | Msa0168410:intron | 65.0% | |
| AACCCCCTGATCCAAGGGCC+TGG | - | chr1_4:51004000-51004019 | Msa0168410:intron | 65.0% | |
| TGCCAGGCCCTTGGATCAGG+GGG | + | chr1_4:51004005-51004024 | None:intergenic | 65.0% | |
| CGTTGCCAGGCCCTTGGATC+AGG | + | chr1_4:51004008-51004027 | None:intergenic | 65.0% | |
| GTCCCACCACTCCCCTGGGT+TGG | + | chr1_4:51002836-51002855 | None:intergenic | 70.0% | |
| CAGTGGCGTTGCCAGGCCCT+TGG | + | chr1_4:51004014-51004033 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 51001627 | 51006786 | 51001627 | ID=Msa0168410;Name=Msa0168410 |
| chr1_4 | mRNA | 51001627 | 51006786 | 51001627 | ID=Msa0168410-mRNA-1;Parent=Msa0168410;Name=Msa0168410-mRNA-1;_AED=0.22;_eAED=0.22;_QI=67|0.66|0.75|1|1|1|4|327|271 |
| chr1_4 | exon | 51001627 | 51002142 | 51001627 | ID=Msa0168410-mRNA-1:exon:15037;Parent=Msa0168410-mRNA-1 |
| chr1_4 | exon | 51005543 | 51005649 | 51005543 | ID=Msa0168410-mRNA-1:exon:15036;Parent=Msa0168410-mRNA-1 |
| chr1_4 | exon | 51006092 | 51006125 | 51006092 | ID=Msa0168410-mRNA-1:exon:15035;Parent=Msa0168410-mRNA-1 |
| chr1_4 | exon | 51006234 | 51006786 | 51006234 | ID=Msa0168410-mRNA-1:exon:15034;Parent=Msa0168410-mRNA-1 |
| chr1_4 | five_prime_UTR | 51006720 | 51006786 | 51006720 | ID=Msa0168410-mRNA-1:five_prime_utr;Parent=Msa0168410-mRNA-1 |
| chr1_4 | CDS | 51006234 | 51006719 | 51006234 | ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1 |
| chr1_4 | CDS | 51006092 | 51006125 | 51006092 | ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1 |
| chr1_4 | CDS | 51005543 | 51005649 | 51005543 | ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1 |
| chr1_4 | CDS | 51001954 | 51002142 | 51001954 | ID=Msa0168410-mRNA-1:cds;Parent=Msa0168410-mRNA-1 |
| chr1_4 | three_prime_UTR | 51001627 | 51001953 | 51001627 | ID=Msa0168410-mRNA-1:three_prime_utr;Parent=Msa0168410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
