AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1035170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035170 MtrunA17_Chr7g0258501 98.529 136 2 0 20 155 1 136 6.71e-94 268
Msa1035170 MtrunA17_Chr2g0329211 57.246 138 53 4 20 155 1 134 4.83e-40 131
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1035170 AT3G57930.1 51.748 143 56 5 20 154 1 138 1.05e-26 98.2
Msa1035170 AT3G57930.2 51.748 143 56 5 20 154 1 138 1.05e-26 98.2
Msa1035170 AT2G42190.3 45.652 138 72 2 20 154 1 138 5.71e-22 86.3
Msa1035170 AT2G42190.1 45.652 138 72 2 20 154 1 138 5.71e-22 86.3
Msa1035170 AT2G42190.2 45.652 138 72 2 20 154 1 138 5.71e-22 86.3

Find 34 sgRNAs with CRISPR-Local

Find 293 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTAGGTTCTTTGACTA+TGG 0.175107 7_1:-70897672 Msa1035170:CDS
TCATCCGTGACCGGCTTTAA+TGG 0.312272 7_1:+70897551 None:intergenic
AGGTAATTACTGTGAATAAA+AGG 0.319727 7_1:-70897442 Msa1035170:CDS
AAAGATGAGGAGAACGTAAA+TGG 0.358180 7_1:-70897494 Msa1035170:CDS
TCTACGGGATTCCGACAAAA+TGG 0.386285 7_1:-70897323 Msa1035170:CDS
GAACCGATGAAAGAGGAAAA+TGG 0.394483 7_1:-70897383 Msa1035170:CDS
ATGGGTAGAGGTCGAGGAAA+GGG 0.429359 7_1:-70897653 Msa1035170:CDS
GTAAATGGTAATGTTTCTAA+TGG 0.448458 7_1:-70897479 Msa1035170:CDS
CCTCACCGTGCTGCTGAAGC+TGG 0.469138 7_1:-70897281 Msa1035170:CDS
TTATTACCTTTCCGTCAACT+AGG 0.496988 7_1:-70897686 Msa1035170:CDS
TTACTGTGAATAAAAGGAAA+AGG 0.499797 7_1:-70897436 Msa1035170:CDS
CAACTAGGTTCTTTGACTAT+GGG 0.503387 7_1:-70897671 Msa1035170:CDS
TTGACTATGGGTAGAGGTCG+AGG 0.519155 7_1:-70897659 Msa1035170:CDS
TAGTCAAAGAACCTAGTTGA+CGG 0.526010 7_1:+70897675 None:intergenic
TGGTGATTCAGTGAAGTCTA+CGG 0.537967 7_1:-70897339 Msa1035170:CDS
AAAGATAGAACCGATGAAAG+AGG 0.540072 7_1:-70897390 Msa1035170:CDS
CACCAGGGCTAGACTTAGCT+CGG 0.543586 7_1:+70897357 None:intergenic
GATTCCGACAAAATGGCAGC+AGG 0.563142 7_1:-70897316 Msa1035170:CDS
GGTGATTCAGTGAAGTCTAC+GGG 0.564571 7_1:-70897338 Msa1035170:CDS
TGGGTAGAGGTCGAGGAAAG+GGG 0.567019 7_1:-70897652 Msa1035170:CDS
GAAGCAATCTGCAATTGTTG+AGG 0.568281 7_1:-70897627 Msa1035170:CDS
GAAAAGGAAGAGATCTTCAC+AGG 0.568389 7_1:-70897420 Msa1035170:CDS
TATGGGTAGAGGTCGAGGAA+AGG 0.570405 7_1:-70897654 Msa1035170:CDS
GTCCGAGCTAAGTCTAGCCC+TGG 0.574363 7_1:-70897359 Msa1035170:CDS
GGTTCTTTGACTATGGGTAG+AGG 0.582744 7_1:-70897665 Msa1035170:CDS
TAATGGTGATCTGAAAACTC+AGG 0.592217 7_1:-70897462 Msa1035170:CDS
AAAGAACCTAGTTGACGGAA+AGG 0.594076 7_1:+70897680 None:intergenic
GAGACCATTAAAGCCGGTCA+CGG 0.602292 7_1:-70897555 Msa1035170:CDS
AAGAGGGAGACCATTAAAGC+CGG 0.607745 7_1:-70897561 Msa1035170:CDS
GTAGACTTCACTGAATCACC+AGG 0.624371 7_1:+70897341 None:intergenic
TGAAAAGATCGAGAAAGATG+AGG 0.635309 7_1:-70897507 Msa1035170:CDS
CTACACCAGCTTCAGCAGCA+CGG 0.678409 7_1:+70897276 None:intergenic
CCAGCTTCAGCAGCACGGTG+AGG 0.706272 7_1:+70897281 None:intergenic
TAGACTTCACTGAATCACCA+GGG 0.745429 7_1:+70897342 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTATTTAATGTATTTCT+TGG - chr7_1:70898705-70898724 Msa1035170:intron 10.0%
!! ATTATAATTAGTTCAATAAA+TGG - chr7_1:70899417-70899436 Msa1035170:intron 10.0%
!! ATTAATTAATTATGAAGGTT+TGG + chr7_1:70897708-70897727 None:intergenic 15.0%
!! AATTGTTATACTATTATACA+GGG + chr7_1:70897767-70897786 None:intergenic 15.0%
!! TAATTGTTATACTATTATAC+AGG + chr7_1:70897768-70897787 None:intergenic 15.0%
!! ACAAAAATTAAGAAAATATG+TGG - chr7_1:70898040-70898059 Msa1035170:intron 15.0%
!! TTGAAATTATGAAATTCATT+GGG + chr7_1:70898263-70898282 None:intergenic 15.0%
!!! TTTGAAATTATGAAATTCAT+TGG + chr7_1:70898264-70898283 None:intergenic 15.0%
!! CATTAATACAAATAACAATA+TGG + chr7_1:70899100-70899119 None:intergenic 15.0%
!!! CATATTGTTATTTGTATTAA+TGG - chr7_1:70899098-70899117 Msa1035170:intron 15.0%
!! AAAATAAAACAAAAGCAAAA+TGG - chr7_1:70899544-70899563 Msa1035170:intron 15.0%
!!! TTATAACAGTTAATTTGTTA+GGG + chr7_1:70899838-70899857 None:intergenic 15.0%
!!! ATTATAACAGTTAATTTGTT+AGG + chr7_1:70899839-70899858 None:intergenic 15.0%
!!! TATTTGTTTTAATTGTTGAT+TGG + chr7_1:70899865-70899884 None:intergenic 15.0%
!!! GCTAAACAAATATTTTTTTT+TGG + chr7_1:70899952-70899971 None:intergenic 15.0%
!!! TTATCACATTTTAAAGTTTT+TGG - chr7_1:70900149-70900168 Msa1035170:intron 15.0%
!! AATAAGATATTAAATGACTA+AGG - chr7_1:70900431-70900450 Msa1035170:intron 15.0%
!! TTATGGTAAAATAAAGAAAT+AGG + chr7_1:70901261-70901280 None:intergenic 15.0%
!! AAATCAGATTAAAAAAAAAC+TGG + chr7_1:70901358-70901377 None:intergenic 15.0%
!!! TTTAATCTGATTTTCTAAAA+TGG - chr7_1:70901365-70901384 Msa1035170:intron 15.0%
!!! TTAATCTGATTTTCTAAAAT+GGG - chr7_1:70901366-70901385 Msa1035170:intron 15.0%
!!! TTAAGTTTTATATCTTTGTT+TGG - chr7_1:70902480-70902499 Msa1035170:intron 15.0%
!!! GTTTAAAGTAATAATACTAG+TGG + chr7_1:70897572-70897591 None:intergenic 20.0%
!! TTATGACAATAATTTAACCA+AGG - chr7_1:70897994-70898013 Msa1035170:intron 20.0%
!!! TGAATTAGATACTTTTGAAT+TGG - chr7_1:70898420-70898439 Msa1035170:intron 20.0%
!! TTGTAGATTAATCTTTCATT+TGG - chr7_1:70898539-70898558 Msa1035170:intron 20.0%
!! ATTAAATATTTGACTCTACT+TGG - chr7_1:70898564-70898583 Msa1035170:intron 20.0%
!!! AATTTAAACTTGTTAGTGAT+TGG + chr7_1:70898812-70898831 None:intergenic 20.0%
!! TACTAATTCCTTAGATAATT+GGG + chr7_1:70900073-70900092 None:intergenic 20.0%
!! TTAAAAAGTGACACTTAAAA+AGG - chr7_1:70900528-70900547 Msa1035170:intron 20.0%
!!! TTATGTGAACATGTTTTAAT+TGG + chr7_1:70900912-70900931 None:intergenic 20.0%
!! TTGGATATTCATAGATATAT+CGG + chr7_1:70900996-70901015 None:intergenic 20.0%
!!! GGTTAAAGATTGAATTTTTA+TGG + chr7_1:70901278-70901297 None:intergenic 20.0%
!!! AATATTTTGATCTGATGATA+GGG + chr7_1:70901321-70901340 None:intergenic 20.0%
!!! AAAAAAACTGGTTTTTAGTT+AGG + chr7_1:70901346-70901365 None:intergenic 20.0%
!!! TTTTGTATCTTACAATGAAA+AGG - chr7_1:70901543-70901562 Msa1035170:intron 20.0%
!! TTTGTATCTTACAATGAAAA+GGG - chr7_1:70901544-70901563 Msa1035170:intron 20.0%
!!! AATTTCGTATTTTGACATTT+TGG - chr7_1:70901734-70901753 Msa1035170:intron 20.0%
!!! ATTTCGTATTTTGACATTTT+GGG - chr7_1:70901735-70901754 Msa1035170:intron 20.0%
!!! TTTGGTTTTTTTTGTTGATA+TGG - chr7_1:70901833-70901852 Msa1035170:intron 20.0%
!! ATGAGTTAAAATTCTGATTA+GGG + chr7_1:70902242-70902261 None:intergenic 20.0%
!! TTGATTCAAGTAATAGTTAA+TGG - chr7_1:70902341-70902360 Msa1035170:intron 20.0%
!! TATCCATCACTTGATATTTT+TGG - chr7_1:70897423-70897442 Msa1035170:CDS 25.0%
! AATATTGTGTTTGTATAGGT+AGG - chr7_1:70897448-70897467 Msa1035170:CDS 25.0%
! TATAACAATTACTCTGTTGT+CGG - chr7_1:70897777-70897796 Msa1035170:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG + chr7_1:70897818-70897837 None:intergenic 25.0%
! AATTAAGAAAATATGTGGCA+TGG - chr7_1:70898045-70898064 Msa1035170:intron 25.0%
!! CATTTAAGTTAGGATATGAA+TGG + chr7_1:70898215-70898234 None:intergenic 25.0%
! TCATATCCTAACTTAAATGT+AGG - chr7_1:70898216-70898235 Msa1035170:intron 25.0%
!! CATTGATAATACACATTTAC+CGG - chr7_1:70898449-70898468 Msa1035170:intron 25.0%
!! ATTGATAATACACATTTACC+GGG - chr7_1:70898450-70898469 Msa1035170:intron 25.0%
! GAAAGATTAATCTACAACTT+AGG + chr7_1:70898536-70898555 None:intergenic 25.0%
!! CTAAGCTGTGTTTATAATTT+TGG - chr7_1:70898644-70898663 Msa1035170:intron 25.0%
!! ATTTTGGATTCTATATTGAG+TGG - chr7_1:70898660-70898679 Msa1035170:intron 25.0%
!! TTAGTGATTGGTGATAATAA+TGG + chr7_1:70898800-70898819 None:intergenic 25.0%
! TAATTCACACCTAAATTGTT+AGG + chr7_1:70898918-70898937 None:intergenic 25.0%
! ACAATTTAGGTGTGAATTAT+TGG - chr7_1:70898919-70898938 Msa1035170:intron 25.0%
!!! AAGCTCTTTTTTTCTTTTAC+AGG - chr7_1:70899287-70899306 Msa1035170:intron 25.0%
!!! TCTTTTCTGAAAATGTCATT+TGG + chr7_1:70899478-70899497 None:intergenic 25.0%
! TCAAAAGAAAGCTTGAAAAT+TGG + chr7_1:70899501-70899520 None:intergenic 25.0%
! TAAAACAAAAGCAAAATGGA+TGG - chr7_1:70899548-70899567 Msa1035170:intron 25.0%
! ATAATTGGGATCTATTTAAG+GGG + chr7_1:70900059-70900078 None:intergenic 25.0%
! GATAATTGGGATCTATTTAA+GGG + chr7_1:70900060-70900079 None:intergenic 25.0%
! AGATAATTGGGATCTATTTA+AGG + chr7_1:70900061-70900080 None:intergenic 25.0%
! AAATAGATCCCAATTATCTA+AGG - chr7_1:70900062-70900081 Msa1035170:intron 25.0%
! CTACTAATTCCTTAGATAAT+TGG + chr7_1:70900074-70900093 None:intergenic 25.0%
!! AGGGAGTATAACAAAAAAAA+AGG + chr7_1:70900274-70900293 None:intergenic 25.0%
! TTTGAAAGTGACAGTTAAAT+AGG + chr7_1:70900338-70900357 None:intergenic 25.0%
! TAAATAACTAAGGGTAATGT+TGG + chr7_1:70900389-70900408 None:intergenic 25.0%
! TTACCCTTAGTTATTTATTG+TGG - chr7_1:70900392-70900411 Msa1035170:intron 25.0%
! TCTCCACAATAAATAACTAA+GGG + chr7_1:70900398-70900417 None:intergenic 25.0%
!!! GAAGAGTCATTTTTAAACAA+CGG + chr7_1:70900670-70900689 None:intergenic 25.0%
!! GTATCACATAGATTCTTTTT+CGG + chr7_1:70900712-70900731 None:intergenic 25.0%
!!! TGAACATGTTTTAATTGGTA+GGG + chr7_1:70900907-70900926 None:intergenic 25.0%
! CTTATCTTTCATAGACATAT+TGG + chr7_1:70901051-70901070 None:intergenic 25.0%
!!! GAATATTTTGATCTGATGAT+AGG + chr7_1:70901322-70901341 None:intergenic 25.0%
! GTGTTTATAAGCAAATTCTA+TGG - chr7_1:70901697-70901716 Msa1035170:intron 25.0%
! TATTGCCAAGAAATTGAAAA+GGG - chr7_1:70901769-70901788 Msa1035170:intron 25.0%
!!! ATTTTTGCTGTGTGAAAAAA+TGG - chr7_1:70901901-70901920 Msa1035170:intron 25.0%
! CATGAGTTAAAATTCTGATT+AGG + chr7_1:70902243-70902262 None:intergenic 25.0%
! ACATAAGTAAAAAACTGAAG+AGG - chr7_1:70902280-70902299 Msa1035170:intron 25.0%
!! GTAAATGGTAATGTTTCTAA+TGG - chr7_1:70902758-70902777 Msa1035170:intron 25.0%
! AGGTAATTACTGTGAATAAA+AGG - chr7_1:70902795-70902814 Msa1035170:intron 25.0%
! TTACTGTGAATAAAAGGAAA+AGG - chr7_1:70902801-70902820 Msa1035170:intron 25.0%
TAAGATTCACACTTGCAATT+TGG - chr7_1:70897343-70897362 Msa1035170:CDS 30.0%
TGTCCAAAAATATCAAGTGA+TGG + chr7_1:70897429-70897448 None:intergenic 30.0%
GGACAATATTGTGTTTGTAT+AGG - chr7_1:70897444-70897463 Msa1035170:CDS 30.0%
! TTTAAACTGATTTAAGCCTG+TGG - chr7_1:70897585-70897604 Msa1035170:CDS 30.0%
!!! TCGGAAATGTATACTTTTTC+CGG - chr7_1:70897796-70897815 Msa1035170:intron 30.0%
TAGCAAATCTAGTAATACTG+TGG + chr7_1:70897963-70897982 None:intergenic 30.0%
!!! AGGGGCAAAAACTTTTTTTT+TGG - chr7_1:70898135-70898154 Msa1035170:intron 30.0%
! ACGTAACCTACATTTAAGTT+AGG + chr7_1:70898225-70898244 None:intergenic 30.0%
TAACTTAAATGTAGGTTACG+TGG - chr7_1:70898224-70898243 Msa1035170:intron 30.0%
CCTTCTTATATTAGACTCTA+CGG + chr7_1:70898348-70898367 None:intergenic 30.0%
CGTAGAGTCTAATATAAGAA+GGG - chr7_1:70898346-70898365 Msa1035170:intron 30.0%
! TTGATAATACACATTTACCG+GGG - chr7_1:70898451-70898470 Msa1035170:intron 30.0%
TATAAACACAGCTTAGCAAT+TGG + chr7_1:70898640-70898659 None:intergenic 30.0%
AAATAATCTTGTACCGCATT+AGG + chr7_1:70899030-70899049 None:intergenic 30.0%
! ACTACAAGTTCTAATTCAGT+AGG + chr7_1:70899133-70899152 None:intergenic 30.0%
TGAATTAGAACTTGTAGTTC+AGG - chr7_1:70899135-70899154 Msa1035170:intron 30.0%
! CAATAAATGGCCTTTTATAC+TGG - chr7_1:70899430-70899449 Msa1035170:intron 30.0%
TAAAGTTGCACCAGTATAAA+AGG + chr7_1:70899443-70899462 None:intergenic 30.0%
! TTCTGAAAATGTCATTTGGA+AGG + chr7_1:70899474-70899493 None:intergenic 30.0%
AAAACTTCGTATGAATAACG+TGG + chr7_1:70900179-70900198 None:intergenic 30.0%
AAGTGACACTTAAAAAGGAA+CGG + chr7_1:70900533-70900552 None:intergenic 30.0%
!!! TCCTTTTTAAGTGTCACTTT+TGG - chr7_1:70900298-70900317 Msa1035170:intron 30.0%
TCCAAAAGTGACACTTAAAA+AGG + chr7_1:70900302-70900321 None:intergenic 30.0%
CTCTCCACAATAAATAACTA+AGG + chr7_1:70900399-70900418 None:intergenic 30.0%
GTAACATTTATTGAGTGTCT+TGG - chr7_1:70900492-70900511 Msa1035170:intron 30.0%
AAGTGACACTTAAAAAGGAA+CGG - chr7_1:70900533-70900552 Msa1035170:intron 30.0%
GATGTAACAATTGAGAACAA+TGG - chr7_1:70900604-70900623 Msa1035170:intron 30.0%
CACTTCTCATTAATCTAAGA+TGG - chr7_1:70900847-70900866 Msa1035170:intron 30.0%
! ATTAATCTAAGATGGTAGAG+TGG - chr7_1:70900855-70900874 Msa1035170:intron 30.0%
!!! GTGAACATGTTTTAATTGGT+AGG + chr7_1:70900908-70900927 None:intergenic 30.0%
! ACAATTGCTGTTGTAAAACT+AGG + chr7_1:70901093-70901112 None:intergenic 30.0%
! AGTTTTACAACAGCAATTGT+TGG - chr7_1:70901093-70901112 Msa1035170:intron 30.0%
TGGAAACAATAGATGCAAAA+TGG + chr7_1:70901172-70901191 None:intergenic 30.0%
!! TGTCTTTGAGATACAAAAAG+TGG - chr7_1:70901390-70901409 Msa1035170:intron 30.0%
! AAAAAGTGGATTCAACAAAC+AGG - chr7_1:70901404-70901423 Msa1035170:intron 30.0%
! AAAAGTGGATTCAACAAACA+GGG - chr7_1:70901405-70901424 Msa1035170:intron 30.0%
CTATTGCCAAGAAATTGAAA+AGG - chr7_1:70901768-70901787 Msa1035170:intron 30.0%
! TGAAACCCTTTTCAATTTCT+TGG + chr7_1:70901777-70901796 None:intergenic 30.0%
!!! CATTTGTTTTGTTCAGGATT+AGG - chr7_1:70901795-70901814 Msa1035170:intron 30.0%
AGATAACTTGATCCTTTGAT+TGG - chr7_1:70901924-70901943 Msa1035170:intron 30.0%
TTCTAAACACAACCAATCAA+AGG + chr7_1:70901939-70901958 None:intergenic 30.0%
! TGTAGCTTTTGTCAAAATCA+TGG - chr7_1:70902105-70902124 Msa1035170:intron 30.0%
! AACATAAAAAGAGTGCATGT+TGG + chr7_1:70902165-70902184 None:intergenic 30.0%
! TATCTAGAAGTTCTTGTTGT+TGG - chr7_1:70902216-70902235 Msa1035170:intron 30.0%
AAACTGAAGAGGAATTATCA+TGG - chr7_1:70902291-70902310 Msa1035170:intron 30.0%
AAACCATGAGGTTTAAAAGA+TGG + chr7_1:70902437-70902456 None:intergenic 30.0%
AATGTCAAACTTAAACCATG+AGG + chr7_1:70902449-70902468 None:intergenic 30.0%
TGTTTGATATTACCGTGCAA+CGG - chr7_1:70897271-70897290 Msa1035170:CDS 35.0%
ATATTCTACTGGATGCAGTA+TGG + chr7_1:70897513-70897532 None:intergenic 35.0%
GAGAAGATTGGATATTCTAC+TGG + chr7_1:70897524-70897543 None:intergenic 35.0%
ATCAACAGTACAGAGAAGAT+TGG + chr7_1:70897536-70897555 None:intergenic 35.0%
! AGGTTTGGAATAATTTCAGC+TGG + chr7_1:70897693-70897712 None:intergenic 35.0%
AATTTATAGCAGACAAGCCT+TGG + chr7_1:70898014-70898033 None:intergenic 35.0%
TATGGAGCTATTACTGGATT+AGG - chr7_1:70898071-70898090 Msa1035170:intron 35.0%
GATTCTTCCACAAGATTACT+TGG - chr7_1:70898093-70898112 Msa1035170:intron 35.0%
AGCAATTCCAAGTAATCTTG+TGG + chr7_1:70898103-70898122 None:intergenic 35.0%
AATTGCTGCCTTTCTTGTTA+GGG - chr7_1:70898116-70898135 Msa1035170:intron 35.0%
CCGTAGAGTCTAATATAAGA+AGG - chr7_1:70898345-70898364 Msa1035170:intron 35.0%
CATCTTATTGAATGAAACCC+CGG + chr7_1:70898471-70898490 None:intergenic 35.0%
ACATCATTACAACCAGACAT+TGG - chr7_1:70898601-70898620 Msa1035170:intron 35.0%
TTGGATTCTATATTGAGTGG+AGG - chr7_1:70898663-70898682 Msa1035170:intron 35.0%
TGAATGTATGTGTGTGTTTC+TGG - chr7_1:70898860-70898879 Msa1035170:intron 35.0%
GAATGTATGTGTGTGTTTCT+GGG - chr7_1:70898861-70898880 Msa1035170:intron 35.0%
GGATCTATTAAAATCCTTGC+AGG + chr7_1:70898968-70898987 None:intergenic 35.0%
! GGTTTTTGTGCATAAGAGTT+TGG + chr7_1:70898989-70899008 None:intergenic 35.0%
AGGAACAACACAAGGTTAAA+AGG + chr7_1:70899010-70899029 None:intergenic 35.0%
ACCTTTAGACTTAGTAGTTC+AGG - chr7_1:70899189-70899208 Msa1035170:intron 35.0%
TCCTGAACTACTAAGTCTAA+AGG + chr7_1:70899193-70899212 None:intergenic 35.0%
TAGACTTAGTAGTTCAGGAT+TGG - chr7_1:70899194-70899213 Msa1035170:intron 35.0%
GAGATTGTTCAATAGAGAAG+AGG + chr7_1:70899237-70899256 None:intergenic 35.0%
! ATGTCATTTGGAAGGTTATG+TGG + chr7_1:70899466-70899485 None:intergenic 35.0%
ACCATTAGACATAGCTACAT+AGG - chr7_1:70899708-70899727 Msa1035170:intron 35.0%
TCCTATGTAGCTATGTCTAA+TGG + chr7_1:70899712-70899731 None:intergenic 35.0%
TACATAGGATCTATGACACT+AGG - chr7_1:70899723-70899742 Msa1035170:intron 35.0%
! ATGACACTAGGATTTTCGTT+AGG - chr7_1:70899735-70899754 Msa1035170:intron 35.0%
! ATTTTCGTTAGGTAAGACAC+TGG - chr7_1:70899746-70899765 Msa1035170:intron 35.0%
AGCAACATAAGTACATAACG+TGG - chr7_1:70899969-70899988 Msa1035170:intron 35.0%
! TGGCACAAGTAGTAGATTTT+TGG - chr7_1:70899989-70900008 Msa1035170:intron 35.0%
! GGCACAAGTAGTAGATTTTT+GGG - chr7_1:70899990-70900009 Msa1035170:intron 35.0%
!! TTTTGGGTCTCTTAACCATT+AGG - chr7_1:70900006-70900025 Msa1035170:intron 35.0%
TGAACAAATCTTGGACCTAA+TGG + chr7_1:70900024-70900043 None:intergenic 35.0%
! TAGGTCCAAGATTTGTTCAA+TGG - chr7_1:70900025-70900044 Msa1035170:intron 35.0%
AGAGACCATTGAACAAATCT+TGG + chr7_1:70900033-70900052 None:intergenic 35.0%
!!! GAGTCATTTTTAAACAACGG+TGG + chr7_1:70900667-70900686 None:intergenic 35.0%
AATGAATTCGTTCAAGTGGT+AGG + chr7_1:70900814-70900833 None:intergenic 35.0%
CAACAATGAATTCGTTCAAG+TGG + chr7_1:70900818-70900837 None:intergenic 35.0%
CACTTGAACGAATTCATTGT+TGG - chr7_1:70900816-70900835 Msa1035170:intron 35.0%
TTAACCAATCACAATGTCAC+AGG + chr7_1:70900950-70900969 None:intergenic 35.0%
ATCGGATATGTGTAGCAATT+GGG + chr7_1:70900978-70900997 None:intergenic 35.0%
TATCGGATATGTGTAGCAAT+TGG + chr7_1:70900979-70900998 None:intergenic 35.0%
TGATGATAGGGAGTGATAAA+GGG + chr7_1:70901309-70901328 None:intergenic 35.0%
!!! GGGTTTCATTTGTTTTGTTC+AGG - chr7_1:70901789-70901808 Msa1035170:intron 35.0%
! CTGGAGCTTTAACAAAATCA+TGG + chr7_1:70902083-70902102 None:intergenic 35.0%
! TTTTGACAAAAGCTACACTC+TGG + chr7_1:70902102-70902121 None:intergenic 35.0%
! AGCTTTTGTCAAAATCATGG+TGG - chr7_1:70902108-70902127 Msa1035170:intron 35.0%
! CAACCATCTTTTAAACCTCA+TGG - chr7_1:70902431-70902450 Msa1035170:intron 35.0%
TTATTACCTTTCCGTCAACT+AGG - chr7_1:70902551-70902570 Msa1035170:intron 35.0%
TAGTCAAAGAACCTAGTTGA+CGG + chr7_1:70902565-70902584 None:intergenic 35.0%
TCAACTAGGTTCTTTGACTA+TGG - chr7_1:70902565-70902584 Msa1035170:intron 35.0%
CAACTAGGTTCTTTGACTAT+GGG - chr7_1:70902566-70902585 Msa1035170:intron 35.0%
TGAAAAGATCGAGAAAGATG+AGG - chr7_1:70902730-70902749 Msa1035170:intron 35.0%
AAAGATGAGGAGAACGTAAA+TGG - chr7_1:70902743-70902762 Msa1035170:intron 35.0%
TAATGGTGATCTGAAAACTC+AGG - chr7_1:70902775-70902794 Msa1035170:intron 35.0%
AAAGATAGAACCGATGAAAG+AGG - chr7_1:70902847-70902866 Msa1035170:intron 35.0%
! ACACCATTTTCCTCTTTCAT+CGG + chr7_1:70902860-70902879 None:intergenic 35.0%
!! TGCAAATTTTAGCCGTTGCA+CGG + chr7_1:70897286-70897305 None:intergenic 40.0%
ATAAATCTCTGTCCAACGTG+TGG + chr7_1:70897401-70897420 None:intergenic 40.0%
TGTGTTTGTATAGGTAGGAG+TGG - chr7_1:70897453-70897472 Msa1035170:CDS 40.0%
AACTATGTGACTGAGAACAC+TGG - chr7_1:70897611-70897630 Msa1035170:CDS 40.0%
AGACTGTAATGCAGTGTTGT+GGG + chr7_1:70897659-70897678 None:intergenic 40.0%
CTGCATTACAGTCTCTATGT+TGG - chr7_1:70897665-70897684 Msa1035170:CDS 40.0%
AAATATGTGGCATGGAGCTA+TGG - chr7_1:70898053-70898072 Msa1035170:intron 40.0%
GAATTGCTGCCTTTCTTGTT+AGG - chr7_1:70898115-70898134 Msa1035170:intron 40.0%
ATTGCTGCCTTTCTTGTTAG+GGG - chr7_1:70898117-70898136 Msa1035170:intron 40.0%
! GTTTTTGCCCCTAACAAGAA+AGG + chr7_1:70898127-70898146 None:intergenic 40.0%
!! ACAACCAGACATTGGCTTTA+TGG - chr7_1:70898609-70898628 Msa1035170:intron 40.0%
! AAATTGTTAGGAGCATGGCA+TGG + chr7_1:70898906-70898925 None:intergenic 40.0%
TGCCATGCTCCTAACAATTT+AGG - chr7_1:70898906-70898925 Msa1035170:intron 40.0%
CACCTAAATTGTTAGGAGCA+TGG + chr7_1:70898911-70898930 None:intergenic 40.0%
GCAGGATAGTACTACTTACT+TGG + chr7_1:70898950-70898969 None:intergenic 40.0%
GTAAGTAGTACTATCCTGCA+AGG - chr7_1:70898951-70898970 Msa1035170:intron 40.0%
! ACCTTGTGTTGTTCCTAATG+CGG - chr7_1:70899014-70899033 Msa1035170:intron 40.0%
ACATGTGAGACTTATCTTGG+GGG + chr7_1:70899586-70899605 None:intergenic 40.0%
CACATGTGAGACTTATCTTG+GGG + chr7_1:70899587-70899606 None:intergenic 40.0%
CCACATGTGAGACTTATCTT+GGG + chr7_1:70899588-70899607 None:intergenic 40.0%
CCAAGATAAGTCTCACATGT+GGG - chr7_1:70899586-70899605 Msa1035170:intron 40.0%
CAAGATAAGTCTCACATGTG+GGG - chr7_1:70899587-70899606 Msa1035170:intron 40.0%
AAGGAATTAGTAGTTGTGCG+CGG - chr7_1:70900081-70900100 Msa1035170:intron 40.0%
GACACTTAAAAAGGAACGGA+GGG + chr7_1:70900537-70900556 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG + chr7_1:70900536-70900555 None:intergenic 40.0%
TGACACTTAAAAAGGAACGG+AGG - chr7_1:70900536-70900555 Msa1035170:intron 40.0%
! TCTAAGATGGTAGAGTGGTT+AGG - chr7_1:70900860-70900879 Msa1035170:intron 40.0%
GATGCAAAATGGAAGATAGC+TGG + chr7_1:70901161-70901180 None:intergenic 40.0%
TGAGTAGTACTGCATTAGAG+CGG + chr7_1:70901207-70901226 None:intergenic 40.0%
GAGTGATAAAGGGATTTGGA+AGG + chr7_1:70901299-70901318 None:intergenic 40.0%
TAGGGAGTGATAAAGGGATT+TGG + chr7_1:70901303-70901322 None:intergenic 40.0%
CTGATGATAGGGAGTGATAA+AGG + chr7_1:70901310-70901329 None:intergenic 40.0%
GGATTAGGTGATCTGTGATA+TGG - chr7_1:70901810-70901829 Msa1035170:intron 40.0%
AGGTGATCTGTGATATGGTT+TGG - chr7_1:70901815-70901834 Msa1035170:intron 40.0%
ATAATCAGAAGCAACACGAC+AGG + chr7_1:70902005-70902024 None:intergenic 40.0%
TTGACAACTGAGTGCATGTT+CGG - chr7_1:70902024-70902043 Msa1035170:intron 40.0%
! AAGAGTGCATGTTGGATTGA+CGG + chr7_1:70902157-70902176 None:intergenic 40.0%
AATGGATCTGAGAGAAAGTG+TGG - chr7_1:70902359-70902378 Msa1035170:intron 40.0%
! TGAGAGAAAGTGTGGAAAAG+TGG - chr7_1:70902367-70902386 Msa1035170:intron 40.0%
! AGAAAGTGTGGAAAAGTGGT+TGG - chr7_1:70902371-70902390 Msa1035170:intron 40.0%
TCTCTGTGCAGATTTCTTGT+AGG - chr7_1:70902523-70902542 Msa1035170:intron 40.0%
AAAGAACCTAGTTGACGGAA+AGG + chr7_1:70902560-70902579 None:intergenic 40.0%
GAAGCAATCTGCAATTGTTG+AGG - chr7_1:70902610-70902629 Msa1035170:intron 40.0%
TACCAGCTCACAGAAAAAGA+GGG - chr7_1:70902660-70902679 Msa1035170:intron 40.0%
GAAAAGGAAGAGATCTTCAC+AGG - chr7_1:70902817-70902836 Msa1035170:intron 40.0%
GAACCGATGAAAGAGGAAAA+TGG - chr7_1:70902854-70902873 Msa1035170:intron 40.0%
TAGACTTCACTGAATCACCA+GGG + chr7_1:70902898-70902917 None:intergenic 40.0%
TGGTGATTCAGTGAAGTCTA+CGG - chr7_1:70902898-70902917 Msa1035170:intron 40.0%
!! CAGCTTCTAGAACTCACAAC+TGG - chr7_1:70897304-70897323 Msa1035170:CDS 45.0%
GTTTGTATAGGTAGGAGTGG+AGG - chr7_1:70897456-70897475 Msa1035170:CDS 45.0%
CAGTCACATAGTTAAGCCAC+AGG + chr7_1:70897604-70897623 None:intergenic 45.0%
ACTGTAATGCAGTGTTGTGG+GGG + chr7_1:70897657-70897676 None:intergenic 45.0%
GACTGTAATGCAGTGTTGTG+GGG + chr7_1:70897658-70897677 None:intergenic 45.0%
GAGACTGTAATGCAGTGTTG+TGG + chr7_1:70897660-70897679 None:intergenic 45.0%
TGGAGCTATGGAGCTATTAC+TGG - chr7_1:70898065-70898084 Msa1035170:intron 45.0%
ATCTACAACTTAGGCGTGCT+AGG + chr7_1:70898527-70898546 None:intergenic 45.0%
!! ACCAGACATTGGCTTTATGG+CGG - chr7_1:70898612-70898631 Msa1035170:intron 45.0%
GCATGGAAATGCTGAAGTAG+GGG + chr7_1:70898889-70898908 None:intergenic 45.0%
GGCATGGAAATGCTGAAGTA+GGG + chr7_1:70898890-70898909 None:intergenic 45.0%
TGGCATGGAAATGCTGAAGT+AGG + chr7_1:70898891-70898910 None:intergenic 45.0%
ACCGCATTAGGAACAACACA+AGG + chr7_1:70899018-70899037 None:intergenic 45.0%
CCCAAGATAAGTCTCACATG+TGG - chr7_1:70899585-70899604 Msa1035170:intron 45.0%
CCCACATGTGAGACTTATCT+TGG + chr7_1:70899589-70899608 None:intergenic 45.0%
ACCACCTGTGACATTGTGAT+TGG - chr7_1:70900943-70900962 Msa1035170:intron 45.0%
ACCAATCACAATGTCACAGG+TGG + chr7_1:70900947-70900966 None:intergenic 45.0%
GCAAAATGGAAGATAGCTGG+AGG + chr7_1:70901158-70901177 None:intergenic 45.0%
TAGTACTGCATTAGAGCGGA+AGG + chr7_1:70901203-70901222 None:intergenic 45.0%
TGACAACTGAGTGCATGTTC+GGG - chr7_1:70902025-70902044 Msa1035170:intron 45.0%
TGTTGGATTGACGGTGAGTT+TGG + chr7_1:70902148-70902167 None:intergenic 45.0%
GGTTCTTTGACTATGGGTAG+AGG - chr7_1:70902572-70902591 Msa1035170:intron 45.0%
GTACCAGCTCACAGAAAAAG+AGG - chr7_1:70902659-70902678 Msa1035170:intron 45.0%
AAGAGGGAGACCATTAAAGC+CGG - chr7_1:70902676-70902695 Msa1035170:intron 45.0%
! TCTTCGTTTTCATCCGTGAC+CGG + chr7_1:70902698-70902717 None:intergenic 45.0%
GTAGACTTCACTGAATCACC+AGG + chr7_1:70902899-70902918 None:intergenic 45.0%
GGTGATTCAGTGAAGTCTAC+GGG - chr7_1:70902899-70902918 Msa1035170:intron 45.0%
TCTACGGGATTCCGACAAAA+TGG - chr7_1:70902914-70902933 Msa1035170:intron 45.0%
!! AATTAATTAATTAATTATGA+AGG + chr7_1:70897713-70897732 None:intergenic 5.0%
!!! TTATTTTCAATTTAAAAAAT+TGG + chr7_1:70899531-70899550 None:intergenic 5.0%
!!! TATTATTTTAAATGATAAAT+TGG + chr7_1:70901015-70901034 None:intergenic 5.0%
GTGTTGTGGGGGATAGGATT+GGG + chr7_1:70897646-70897665 None:intergenic 50.0%
AGTGTTGTGGGGGATAGGAT+TGG + chr7_1:70897647-70897666 None:intergenic 50.0%
AATGCAGTGTTGTGGGGGAT+AGG + chr7_1:70897652-70897671 None:intergenic 50.0%
!! CCAGACATTGGCTTTATGGC+GGG - chr7_1:70898613-70898632 Msa1035170:intron 50.0%
TAGAGCGGAAGGAAGATGGA+TGG + chr7_1:70901192-70901211 None:intergenic 50.0%
GCATTAGAGCGGAAGGAAGA+TGG + chr7_1:70901196-70901215 None:intergenic 50.0%
TGAGTGCATGTTCGGGATCA+TGG - chr7_1:70902032-70902051 Msa1035170:intron 50.0%
TTGACTATGGGTAGAGGTCG+AGG - chr7_1:70902578-70902597 Msa1035170:intron 50.0%
TATGGGTAGAGGTCGAGGAA+AGG - chr7_1:70902583-70902602 Msa1035170:intron 50.0%
ATGGGTAGAGGTCGAGGAAA+GGG - chr7_1:70902584-70902603 Msa1035170:intron 50.0%
! CTCCCTCTTTTTCTGTGAGC+TGG + chr7_1:70902665-70902684 None:intergenic 50.0%
GAGACCATTAAAGCCGGTCA+CGG - chr7_1:70902682-70902701 Msa1035170:intron 50.0%
! TCATCCGTGACCGGCTTTAA+TGG + chr7_1:70902689-70902708 None:intergenic 50.0%
GATTCCGACAAAATGGCAGC+AGG - chr7_1:70902921-70902940 Msa1035170:intron 50.0%
!!! TACGCCTGCTGCCATTTTGT+CGG + chr7_1:70902928-70902947 None:intergenic 50.0%
GTACCACTGAAGCCACACGT+TGG - chr7_1:70897386-70897405 Msa1035170:CDS 55.0%
TGTCCAACGTGTGGCTTCAG+TGG + chr7_1:70897392-70897411 None:intergenic 55.0%
CCCGCCATAAAGCCAATGTC+TGG + chr7_1:70898616-70898635 None:intergenic 55.0%
GTGAGACTTATCTTGGGGGC+AGG + chr7_1:70899582-70899601 None:intergenic 55.0%
TGGGTAGAGGTCGAGGAAAG+GGG - chr7_1:70902585-70902604 Msa1035170:intron 55.0%
CACCAGGGCTAGACTTAGCT+CGG + chr7_1:70902883-70902902 None:intergenic 55.0%
CTACACCAGCTTCAGCAGCA+CGG + chr7_1:70902964-70902983 None:intergenic 55.0%
GTCCGAGCTAAGTCTAGCCC+TGG - chr7_1:70902878-70902897 Msa1035170:intron 60.0%
CCAGCTTCAGCAGCACGGTG+AGG + chr7_1:70902959-70902978 None:intergenic 65.0%
! CCTCACCGTGCTGCTGAAGC+TGG - chr7_1:70902956-70902975 Msa1035170:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 70897265 70902994 70897265 ID=Msa1035170;Name=Msa1035170
chr7_1 mRNA 70897265 70902994 70897265 ID=Msa1035170-mRNA-1;Parent=Msa1035170;Name=Msa1035170-mRNA-1;_AED=0.34;_eAED=0.34;_QI=0|0|0|0.5|0|0.25|4|0|155
chr7_1 exon 70902991 70902994 70902991 ID=Msa1035170-mRNA-1:exon:17089;Parent=Msa1035170-mRNA-1
chr7_1 exon 70901490 70901496 70901490 ID=Msa1035170-mRNA-1:exon:17088;Parent=Msa1035170-mRNA-1
chr7_1 exon 70897719 70897725 70897719 ID=Msa1035170-mRNA-1:exon:17087;Parent=Msa1035170-mRNA-1
chr7_1 exon 70897265 70897714 70897265 ID=Msa1035170-mRNA-1:exon:17086;Parent=Msa1035170-mRNA-1
chr7_1 CDS 70902991 70902994 70902991 ID=Msa1035170-mRNA-1:cds;Parent=Msa1035170-mRNA-1
chr7_1 CDS 70901490 70901496 70901490 ID=Msa1035170-mRNA-1:cds;Parent=Msa1035170-mRNA-1
chr7_1 CDS 70897719 70897725 70897719 ID=Msa1035170-mRNA-1:cds;Parent=Msa1035170-mRNA-1
chr7_1 CDS 70897265 70897714 70897265 ID=Msa1035170-mRNA-1:cds;Parent=Msa1035170-mRNA-1
Gene Sequence

>Msa1035170

ATGGTTAATTTATTTCTTGTATATTTATTACCTTTCCGTCAACTAGGTTCTTTGACTATGGGTAGAGGTCGAGGAAAGGGGAAGAAGCAATCTGCAATTGTTGAGGATTTTGTAAGCGATGAAGATGATAAAGTACCAGCTCACAGAAAAAGAGGGAGACCATTAAAGCCGGTCACGGATGAAAACGAAGAAATTGAAGTGACTGAAAAGATCGAGAAAGATGAGGAGAACGTAAATGGTAATGTTTCTAATGGTGATCTGAAAACTCAGGTAATTACTGTGAATAAAAGGAAAAGGAAGAGATCTTCACAGGTTAAAGAAAAGATAGAACCGATGAAAGAGGAAAATGGTGTCCGAGCTAAGTCTAGCCCTGGTGATTCAGTGAAGTCTACGGGATTCCGACAAAATGGCAGCAGGCGTAAAAGCAAGCCTCACCGTGCTGCTGAAGCTGGTGTAGATTGCAAGTGA

Protein sequence

>Msa1035170

MVNLFLVYLLPFRQLGSLTMGRGRGKGKKQSAIVEDFVSDEDDKVPAHRKRGRPLKPVTDENEEIEVTEKIEKDEENVNGNVSNGDLKTQVITVNKRKRKRSSQVKEKIEPMKEENGVRAKSSPGDSVKSTGFRQNGSRRKSKPHRAAEAGVDCK*