AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1284260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284260 MtrunA17_Chr8g0355641 96.815 157 5 0 1 157 1 157 1.17e-111 313
Msa1284260 MtrunA17_Chr8g0355741 75.641 156 38 0 1 156 1 156 3.17e-86 249
Msa1284260 MtrunA17_Chr8g0355721 70.513 156 45 1 1 156 1 155 9.16e-83 240
Msa1284260 MtrunA17_Chr8g0355781 71.523 151 43 0 1 151 1 151 1.10e-81 238
Msa1284260 MtrunA17_Chr8g0355661 69.231 156 47 1 1 156 1 155 3.05e-79 231
Msa1284260 MtrunA17_Chr8g0355761 68.874 151 47 0 1 151 1 151 6.27e-78 228
Msa1284260 MtrunA17_Chr8g0355811 66.026 156 52 1 1 156 1 155 5.62e-77 226
Msa1284260 MtrunA17_Chr8g0355821 66.452 155 51 1 1 155 1 154 6.40e-75 221
Msa1284260 MtrunA17_Chr8g0355791 63.462 156 56 1 1 156 1 155 3.67e-71 211
Msa1284260 MtrunA17_Chr8g0355801 63.462 156 56 1 1 156 1 155 6.27e-71 210
Msa1284260 MtrunA17_Chr8g0355771 62.821 156 57 1 1 156 1 155 3.66e-70 208
Msa1284260 MtrunA17_Chr1g0160371 42.208 154 86 2 1 152 1 153 6.52e-38 127
Msa1284260 MtrunA17_Chr1g0160381 39.610 154 90 2 1 152 5 157 2.83e-36 122
Msa1284260 MtrunA17_Chr8g0339261 32.667 150 98 3 6 154 8 155 5.19e-26 96.7
Msa1284260 MtrunA17_Chr1g0160351 46.739 92 47 1 63 152 3 94 2.16e-22 85.5
Msa1284260 MtrunA17_Chr1g0160391 32.692 156 97 4 1 149 1 155 1.17e-21 85.5
Msa1284260 MtrunA17_Chr1g0160801 34.694 147 87 5 7 151 7 146 6.34e-21 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1284260 AT5G28010.1 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1284260 AT5G28010.2 32.895 152 99 3 3 152 15 165 1.25e-22 88.6
Msa1284260 AT1G70830.5 32.237 152 100 3 3 152 22 172 7.46e-22 86.7
Msa1284260 AT1G70830.3 32.237 152 100 3 3 152 22 172 1.55e-21 86.7
Msa1284260 AT1G70840.1 31.579 152 101 3 3 152 20 170 4.39e-21 84.7
Msa1284260 AT1G70830.2 32.237 152 100 3 3 152 22 172 4.44e-21 86.7
Msa1284260 AT1G70830.1 32.237 152 100 3 3 152 22 172 1.29e-20 86.7
Msa1284260 AT1G70830.1 30.921 152 102 3 3 152 184 334 4.03e-19 82.4
Msa1284260 AT1G70890.1 30.921 152 102 3 3 152 7 157 2.32e-20 82.4
Msa1284260 AT1G70830.4 30.921 152 102 3 3 152 137 287 1.91e-19 82.8
Msa1284260 AT1G70850.2 30.667 150 101 3 3 150 9 157 4.38e-19 80.9
Msa1284260 AT1G70850.3 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1284260 AT1G70850.3 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1284260 AT1G70850.1 30.667 150 101 3 3 150 9 157 1.04e-18 81.3
Msa1284260 AT1G70850.1 30.986 142 95 3 13 152 175 315 1.35e-17 78.2
Msa1284260 AT1G23120.1 28.105 153 105 3 1 153 1 148 1.99e-18 77.0
Msa1284260 AT1G23120.2 28.758 153 102 4 3 153 51 198 1.17e-17 76.3
Msa1284260 AT1G23130.1 27.152 151 108 2 3 152 10 159 6.07e-17 73.6
Msa1284260 AT5G28000.1 28.947 152 105 3 3 152 13 163 1.68e-16 72.4
Msa1284260 AT1G70870.1 32.450 151 89 4 1 151 1 138 1.73e-16 72.0
Msa1284260 AT4G23670.1 29.605 152 104 3 1 151 1 150 6.06e-16 70.9
Msa1284260 AT1G70880.1 25.658 152 110 3 3 152 8 158 3.24e-15 68.9
Msa1284260 AT1G24020.1 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1284260 AT1G24020.2 29.870 154 104 3 1 152 1 152 4.85e-15 68.6
Msa1284260 AT2G01520.1 27.632 152 107 3 1 151 1 150 1.41e-14 67.4
Msa1284260 AT1G14930.1 26.974 152 108 3 1 151 1 150 6.82e-14 65.5
Msa1284260 AT2G01530.1 28.289 152 106 3 1 151 1 150 1.73e-13 64.3
Msa1284260 AT1G35260.1 27.517 149 98 4 7 150 6 149 6.52e-13 62.8
Msa1284260 AT1G35310.1 26.761 142 101 3 13 153 12 151 9.94e-13 62.4
Msa1284260 AT4G14060.1 26.974 152 108 3 1 151 1 150 1.28e-12 62.0
Msa1284260 AT4G23680.1 25.658 152 110 3 1 151 1 150 2.61e-12 61.2
Msa1284260 AT1G30990.1 27.815 151 105 4 1 150 1 148 1.22e-11 59.7
Msa1284260 AT1G14940.1 26.490 151 108 3 1 150 1 149 1.45e-11 59.3

Find 44 sgRNAs with CRISPR-Local

Find 176 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTACGTTCTTATGACTTA+TGG 0.201432 8_3:+26326191 None:intergenic
GATTATGTTTCTTGGAAATT+AGG 0.208750 8_3:-26325911 Msa1284260:three_prime_UTR
ATTTAAAGGTCGCTCATATT+TGG 0.220038 8_3:-26325847 Msa1284260:three_prime_UTR
GGTAAACTTAGCACTGAAAT+TGG 0.239596 8_3:-26327667 Msa1284260:CDS
TCAAGTTTGATTATGTTTCT+TGG 0.259521 8_3:-26325919 Msa1284260:three_prime_UTR
AGGTATTCCATCCAACTATT+TGG 0.260874 8_3:+26326269 None:intergenic
GTGTTTGTGTCTTCAATAAA+TGG 0.262059 8_3:-26326025 Msa1284260:three_prime_UTR
ACTCCCCTATATCTATTTAA+AGG 0.290742 8_3:-26325861 Msa1284260:three_prime_UTR
ATGGCACTACTGCAGTTAAA+TGG 0.307509 8_3:-26326331 Msa1284260:CDS
GGCATATTGCATATGCATAT+TGG 0.310006 8_3:-26326095 Msa1284260:three_prime_UTR
GAATGTTATATTCATAGTTT+TGG 0.318064 8_3:-26325947 Msa1284260:three_prime_UTR
GCGACCTTTAAATAGATATA+GGG 0.340264 8_3:+26325857 None:intergenic
CTTCGCTCATGAATATTCAT+TGG 0.375019 8_3:+26325733 None:intergenic
AGCGACCTTTAAATAGATAT+AGG 0.386450 8_3:+26325856 None:intergenic
TGAAAGAAAGAAAGAAAGAA+AGG 0.432553 8_3:+26327725 None:intergenic
TTCATCACCTTGATGCAGCT+TGG 0.437287 8_3:+26327558 None:intergenic
GTAAACTTAGCACTGAAATT+GGG 0.446714 8_3:-26327666 Msa1284260:CDS
TAGGCAACAGATGAAGTAAT+CGG 0.462518 8_3:-26325892 Msa1284260:three_prime_UTR
AGAAATTGATGAGCACTATA+AGG 0.468901 8_3:-26326390 Msa1284260:CDS
AAAATCGTCCACAAGATCTT+CGG 0.479675 8_3:-26326416 Msa1284260:CDS
AACGACTTATAGTGAAATAG+AGG 0.480422 8_3:+26325616 None:intergenic
ACAAATGAATAGTAATGTAA+TGG 0.498210 8_3:-26326171 Msa1284260:three_prime_UTR
TAATGTAATGGCTTAATGCA+TGG 0.501070 8_3:-26326159 Msa1284260:three_prime_UTR
TATTCCATCCAACTATTTGG+AGG 0.505271 8_3:+26326272 None:intergenic
AGCTGCATCAAGGTGATGAA+TGG 0.510022 8_3:-26327555 Msa1284260:CDS
TTTCTTCACCGAAGATCTTG+TGG 0.512241 8_3:+26326408 None:intergenic
GAAAGAAAGAAAGAAAGAAA+GGG 0.515116 8_3:+26327726 None:intergenic
CATCATTGAAGTGATTGATA+AGG 0.521648 8_3:-26326357 Msa1284260:CDS
ATGTTGAACCTCCAAATAGT+TGG 0.544310 8_3:-26326280 Msa1284260:CDS
CGATTTCACAACAGAGGGCA+AGG 0.552186 8_3:-26326486 Msa1284260:intron
AATGTAATGGCTTAATGCAT+GGG 0.552317 8_3:-26326158 Msa1284260:three_prime_UTR
CATGAAACCAAGCTGCATCA+AGG 0.562710 8_3:-26327565 Msa1284260:CDS
ACACAAACTTTAAAGATGAA+AGG 0.566966 8_3:+26326130 None:intergenic
TTTGTATGGAATAAATGTGT+CGG 0.578676 8_3:-26326055 Msa1284260:three_prime_UTR
GAAAAGTGATGACGACTCAA+AGG 0.581488 8_3:-26325702 Msa1284260:three_prime_UTR
CGACCTTTAAATAGATATAG+GGG 0.601199 8_3:+26325858 None:intergenic
TGAACCTCCAAATAGTTGGA+TGG 0.602941 8_3:-26326276 Msa1284260:CDS
TGTCTCGAGTGCATTTGCTA+AGG 0.617854 8_3:+26326249 None:intergenic
ACTCTGATTCAGTTAAACAC+TGG 0.620261 8_3:-26327528 Msa1284260:CDS
TAGTTTGAAGAACTTGTCAG+AGG 0.640528 8_3:+26327633 None:intergenic
ATGTAATGGCTTAATGCATG+GGG 0.641479 8_3:-26326157 Msa1284260:three_prime_UTR
TCATCTTGTCAAGCAAGCAA+AGG 0.651550 8_3:-26326219 Msa1284260:CDS
GAAGTGATTGATAAGGCTGA+TGG 0.663192 8_3:-26326350 Msa1284260:CDS
AAACACTGGACTCATGTCCG+AGG 0.721608 8_3:-26327514 Msa1284260:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGTTTACAATTTTTTTTTT+TGG - chr8_3:26326678-26326697 Msa1284260:intron 10.0%
!!! TGTTTACAATTTTTTTTTTT+GGG - chr8_3:26326679-26326698 Msa1284260:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_3:26326845-26326864 None:intergenic 10.0%
!!! TTGTTTACAATTTTTTTTTT+TGG - chr8_3:26326678-26326697 Msa1284260:intron 10.0%
!!! TGTTTACAATTTTTTTTTTT+GGG - chr8_3:26326679-26326698 Msa1284260:intron 10.0%
!! AATTCCAATAAAAATTAAAA+CGG + chr8_3:26326845-26326864 None:intergenic 10.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_3:26325866-26325885 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_3:26326085-26326104 Msa1284260:three_prime_UTR 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_3:26326355-26326374 Msa1284260:CDS 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_3:26326448-26326467 Msa1284260:CDS 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_3:26326565-26326584 Msa1284260:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_3:26326637-26326656 None:intergenic 15.0%
!!! GTTTACAATTTTTTTTTTTG+GGG - chr8_3:26326680-26326699 Msa1284260:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_3:26326778-26326797 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_3:26326838-26326857 Msa1284260:intron 15.0%
!! ATTAGAAATATAATTTACCT+CGG + chr8_3:26325866-26325885 None:intergenic 15.0%
!! AATAACATATTGCAAAATTT+GGG - chr8_3:26326085-26326104 Msa1284260:three_prime_UTR 15.0%
!! ACCATTAAATTAAAATTAGA+TGG - chr8_3:26326355-26326374 Msa1284260:CDS 15.0%
!!! AGATGAATATTTTAATTGAA+CGG - chr8_3:26326448-26326467 Msa1284260:CDS 15.0%
!! ATCATCATGATATATAAAAT+TGG - chr8_3:26326565-26326584 Msa1284260:intron 15.0%
!!! ATAATTTAAAACTATTTGGT+TGG + chr8_3:26326637-26326656 None:intergenic 15.0%
!!! GTTTACAATTTTTTTTTTTG+GGG - chr8_3:26326680-26326699 Msa1284260:intron 15.0%
!! AGTATAATTATAGAAACATA+TGG + chr8_3:26326778-26326797 None:intergenic 15.0%
!!! ATAACCGTTTTAATTTTTAT+TGG - chr8_3:26326838-26326857 Msa1284260:intron 15.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_3:26326015-26326034 Msa1284260:three_prime_UTR 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_3:26326084-26326103 Msa1284260:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_3:26326137-26326156 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_3:26326136-26326155 Msa1284260:three_prime_UTR 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_3:26326172-26326191 Msa1284260:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_3:26326217-26326236 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_3:26326275-26326294 Msa1284260:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_3:26326280-26326299 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_3:26326359-26326378 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_3:26326577-26326596 Msa1284260:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG - chr8_3:26327189-26327208 Msa1284260:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_3:26327413-26327432 Msa1284260:intron 20.0%
!!! GACATCTTTAAATTTCATTT+TGG - chr8_3:26326015-26326034 Msa1284260:three_prime_UTR 20.0%
!! CAATAACATATTGCAAAATT+TGG - chr8_3:26326084-26326103 Msa1284260:three_prime_UTR 20.0%
!!! TTTAGATCTGTCATATTTTT+AGG + chr8_3:26326137-26326156 None:intergenic 20.0%
!! TAAAAATATGACAGATCTAA+AGG - chr8_3:26326136-26326155 Msa1284260:three_prime_UTR 20.0%
!! GATCTAAGTAAAAGATATAA+AGG - chr8_3:26326172-26326191 Msa1284260:three_prime_UTR 20.0%
!! ATTCAAGATCAATATCAATA+TGG + chr8_3:26326217-26326236 None:intergenic 20.0%
!! AACCAATCAACAATTAATAA+TGG - chr8_3:26326275-26326294 Msa1284260:CDS 20.0%
!! TTCCATTATTAATTGTTGAT+TGG + chr8_3:26326280-26326299 None:intergenic 20.0%
!!! GCCATCTAATTTTAATTTAA+TGG + chr8_3:26326359-26326378 None:intergenic 20.0%
!!! TATAAAATTGGTTGATTTGA+TGG - chr8_3:26326577-26326596 Msa1284260:intron 20.0%
!! ACAAATGAATAGTAATGTAA+TGG - chr8_3:26327189-26327208 Msa1284260:intron 20.0%
!!! GAATGTTATATTCATAGTTT+TGG - chr8_3:26327413-26327432 Msa1284260:intron 20.0%
! GAAAGAAAGAAAGAAAGAAA+GGG + chr8_3:26325637-26325656 None:intergenic 25.0%
! TGAAAGAAAGAAAGAAAGAA+AGG + chr8_3:26325638-26325657 None:intergenic 25.0%
! TTAGTTTCTCTCTTCAAAAA+TGG - chr8_3:26325662-26325681 Msa1284260:three_prime_UTR 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_3:26325877-26325896 Msa1284260:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_3:26325942-26325961 Msa1284260:three_prime_UTR 25.0%
!! ACACAAACTTTAAAGATGAA+AGG + chr8_3:26327233-26327252 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_3:26327244-26327263 Msa1284260:intron 25.0%
! TTTGTATGGAATAAATGTGT+CGG - chr8_3:26327305-26327324 Msa1284260:intron 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG - chr8_3:26327352-26327371 Msa1284260:intron 25.0%
! TCAAGTTTGATTATGTTTCT+TGG - chr8_3:26327441-26327460 Msa1284260:intron 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_3:26327449-26327468 Msa1284260:intron 25.0%
! GAAAGAAAGAAAGAAAGAAA+GGG + chr8_3:26325637-26325656 None:intergenic 25.0%
! TGAAAGAAAGAAAGAAAGAA+AGG + chr8_3:26325638-26325657 None:intergenic 25.0%
! TTAGTTTCTCTCTTCAAAAA+TGG - chr8_3:26325662-26325681 Msa1284260:three_prime_UTR 25.0%
! ATTTCTAATAACACTAACAC+TGG - chr8_3:26325877-26325896 Msa1284260:three_prime_UTR 25.0%
!!! TTGTCTTCTGATTTTTAACT+TGG - chr8_3:26325942-26325961 Msa1284260:three_prime_UTR 25.0%
!! ACACAAACTTTAAAGATGAA+AGG + chr8_3:26327233-26327252 None:intergenic 25.0%
!!! AGTTTGTGTTATTTTCGTAA+TGG - chr8_3:26327244-26327263 Msa1284260:intron 25.0%
! TTTGTATGGAATAAATGTGT+CGG - chr8_3:26327305-26327324 Msa1284260:intron 25.0%
!!! AAATGGTTTTTTGTGCTTTT+TGG - chr8_3:26327352-26327371 Msa1284260:intron 25.0%
! TCAAGTTTGATTATGTTTCT+TGG - chr8_3:26327441-26327460 Msa1284260:intron 25.0%
! GATTATGTTTCTTGGAAATT+AGG - chr8_3:26327449-26327468 Msa1284260:intron 25.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_3:26325694-26325713 Msa1284260:three_prime_UTR 30.0%
!!! ACTGGATTTATGTGCTATTT+TGG - chr8_3:26325895-26325914 Msa1284260:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_3:26326303-26326322 Msa1284260:CDS 30.0%
ATGTACAAGTACAACTACAA+AGG - chr8_3:26326477-26326496 Msa1284260:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_3:26326581-26326600 Msa1284260:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_3:26326588-26326607 Msa1284260:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_3:26326615-26326634 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_3:26326629-26326648 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_3:26326970-26326989 Msa1284260:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_3:26327003-26327022 Msa1284260:intron 30.0%
TGTTACGTTCTTATGACTTA+TGG + chr8_3:26327172-26327191 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG - chr8_3:26327201-26327220 Msa1284260:intron 30.0%
AATGTAATGGCTTAATGCAT+GGG - chr8_3:26327202-26327221 Msa1284260:intron 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG - chr8_3:26327291-26327310 Msa1284260:intron 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_3:26327335-26327354 Msa1284260:intron 30.0%
ACTCCCCTATATCTATTTAA+AGG - chr8_3:26327499-26327518 Msa1284260:intron 30.0%
CGACCTTTAAATAGATATAG+GGG + chr8_3:26327505-26327524 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG + chr8_3:26327506-26327525 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_3:26327507-26327526 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_3:26327513-26327532 Msa1284260:intron 30.0%
! GTAAACTTAGCACTGAAATT+GGG - chr8_3:26325694-26325713 Msa1284260:three_prime_UTR 30.0%
!!! ACTGGATTTATGTGCTATTT+TGG - chr8_3:26325895-26325914 Msa1284260:three_prime_UTR 30.0%
GATATATATAGCAAGAGTGA+TGG - chr8_3:26326303-26326322 Msa1284260:CDS 30.0%
ATGTACAAGTACAACTACAA+AGG - chr8_3:26326477-26326496 Msa1284260:intron 30.0%
!! AAATTGGTTGATTTGATGGT+TGG - chr8_3:26326581-26326600 Msa1284260:intron 30.0%
! TTGATTTGATGGTTGGAATA+GGG - chr8_3:26326588-26326607 Msa1284260:intron 30.0%
!! GCTTTAAGGATCTCTAATTT+AGG + chr8_3:26326615-26326634 None:intergenic 30.0%
!! AAACTATTTGGTTGGCTTTA+AGG + chr8_3:26326629-26326648 None:intergenic 30.0%
AGAAATTGATGAGCACTATA+AGG - chr8_3:26326970-26326989 Msa1284260:intron 30.0%
CATCATTGAAGTGATTGATA+AGG - chr8_3:26327003-26327022 Msa1284260:intron 30.0%
TGTTACGTTCTTATGACTTA+TGG + chr8_3:26327172-26327191 None:intergenic 30.0%
TAATGTAATGGCTTAATGCA+TGG - chr8_3:26327201-26327220 Msa1284260:intron 30.0%
AATGTAATGGCTTAATGCAT+GGG - chr8_3:26327202-26327221 Msa1284260:intron 30.0%
! GTTTTCATCTTTCGTTTGTA+TGG - chr8_3:26327291-26327310 Msa1284260:intron 30.0%
GTGTTTGTGTCTTCAATAAA+TGG - chr8_3:26327335-26327354 Msa1284260:intron 30.0%
ACTCCCCTATATCTATTTAA+AGG - chr8_3:26327499-26327518 Msa1284260:intron 30.0%
CGACCTTTAAATAGATATAG+GGG + chr8_3:26327505-26327524 None:intergenic 30.0%
GCGACCTTTAAATAGATATA+GGG + chr8_3:26327506-26327525 None:intergenic 30.0%
AGCGACCTTTAAATAGATAT+AGG + chr8_3:26327507-26327526 None:intergenic 30.0%
ATTTAAAGGTCGCTCATATT+TGG - chr8_3:26327513-26327532 Msa1284260:intron 30.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_3:26325693-26325712 Msa1284260:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_3:26325730-26325749 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_3:26325832-26325851 Msa1284260:three_prime_UTR 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_3:26326310-26326329 Msa1284260:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_3:26326587-26326606 Msa1284260:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_3:26326589-26326608 Msa1284260:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_3:26326944-26326963 Msa1284260:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_3:26327080-26327099 Msa1284260:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_3:26327091-26327110 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_3:26327094-26327113 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG - chr8_3:26327203-26327222 Msa1284260:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_3:26327265-26327284 Msa1284260:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_3:26327468-26327487 Msa1284260:intron 35.0%
CTTCGCTCATGAATATTCAT+TGG + chr8_3:26327630-26327649 None:intergenic 35.0%
! GGTAAACTTAGCACTGAAAT+TGG - chr8_3:26325693-26325712 Msa1284260:three_prime_UTR 35.0%
TAGTTTGAAGAACTTGTCAG+AGG + chr8_3:26325730-26325749 None:intergenic 35.0%
ACTCTGATTCAGTTAAACAC+TGG - chr8_3:26325832-26325851 Msa1284260:three_prime_UTR 35.0%
!! ATAGCAAGAGTGATGGATTT+AGG - chr8_3:26326310-26326329 Msa1284260:CDS 35.0%
!! GTTGATTTGATGGTTGGAAT+AGG - chr8_3:26326587-26326606 Msa1284260:intron 35.0%
! TGATTTGATGGTTGGAATAG+GGG - chr8_3:26326589-26326608 Msa1284260:intron 35.0%
AAAATCGTCCACAAGATCTT+CGG - chr8_3:26326944-26326963 Msa1284260:intron 35.0%
ATGTTGAACCTCCAAATAGT+TGG - chr8_3:26327080-26327099 Msa1284260:intron 35.0%
TATTCCATCCAACTATTTGG+AGG + chr8_3:26327091-26327110 None:intergenic 35.0%
AGGTATTCCATCCAACTATT+TGG + chr8_3:26327094-26327113 None:intergenic 35.0%
ATGTAATGGCTTAATGCATG+GGG - chr8_3:26327203-26327222 Msa1284260:intron 35.0%
GGCATATTGCATATGCATAT+TGG - chr8_3:26327265-26327284 Msa1284260:intron 35.0%
TAGGCAACAGATGAAGTAAT+CGG - chr8_3:26327468-26327487 Msa1284260:intron 35.0%
CTTCGCTCATGAATATTCAT+TGG + chr8_3:26327630-26327649 None:intergenic 35.0%
TCTTCAAAAATGGTGCTTGC+TGG - chr8_3:26325672-26325691 Msa1284260:three_prime_UTR 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_3:26326868-26326887 Msa1284260:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_3:26326869-26326888 Msa1284260:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_3:26326955-26326974 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_3:26327010-26327029 Msa1284260:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_3:26327029-26327048 Msa1284260:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_3:26327084-26327103 Msa1284260:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_3:26327141-26327160 Msa1284260:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_3:26327658-26327677 Msa1284260:CDS 40.0%
TCTTCAAAAATGGTGCTTGC+TGG - chr8_3:26325672-26325691 Msa1284260:three_prime_UTR 40.0%
TACCTTCGATTTCACAACAG+AGG - chr8_3:26326868-26326887 Msa1284260:intron 40.0%
ACCTTCGATTTCACAACAGA+GGG - chr8_3:26326869-26326888 Msa1284260:intron 40.0%
TTTCTTCACCGAAGATCTTG+TGG + chr8_3:26326955-26326974 None:intergenic 40.0%
GAAGTGATTGATAAGGCTGA+TGG - chr8_3:26327010-26327029 Msa1284260:intron 40.0%
ATGGCACTACTGCAGTTAAA+TGG - chr8_3:26327029-26327048 Msa1284260:intron 40.0%
TGAACCTCCAAATAGTTGGA+TGG - chr8_3:26327084-26327103 Msa1284260:intron 40.0%
TCATCTTGTCAAGCAAGCAA+AGG - chr8_3:26327141-26327160 Msa1284260:intron 40.0%
! GAAAAGTGATGACGACTCAA+AGG - chr8_3:26327658-26327677 Msa1284260:CDS 40.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_3:26325795-26325814 Msa1284260:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_3:26325805-26325824 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_3:26325805-26325824 Msa1284260:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_3:26327114-26327133 None:intergenic 45.0%
CATGAAACCAAGCTGCATCA+AGG - chr8_3:26325795-26325814 Msa1284260:three_prime_UTR 45.0%
TTCATCACCTTGATGCAGCT+TGG + chr8_3:26325805-26325824 None:intergenic 45.0%
AGCTGCATCAAGGTGATGAA+TGG - chr8_3:26325805-26325824 Msa1284260:three_prime_UTR 45.0%
! TGTCTCGAGTGCATTTGCTA+AGG + chr8_3:26327114-26327133 None:intergenic 45.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_3:26326641-26326660 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_3:26326749-26326768 Msa1284260:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_3:26326750-26326769 Msa1284260:intron 5.0%
!!! AATAATAATTTAAAACTATT+TGG + chr8_3:26326641-26326660 None:intergenic 5.0%
!!! TTTTTTTTTTAAGAAAAAAT+TGG - chr8_3:26326749-26326768 Msa1284260:intron 5.0%
!!! TTTTTTTTTAAGAAAAAATT+GGG - chr8_3:26326750-26326769 Msa1284260:intron 5.0%
AAACACTGGACTCATGTCCG+AGG - chr8_3:26325846-26325865 Msa1284260:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_3:26326873-26326892 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_3:26326874-26326893 Msa1284260:intron 50.0%
AAACACTGGACTCATGTCCG+AGG - chr8_3:26325846-26325865 Msa1284260:three_prime_UTR 50.0%
GCCCTCTGTTGTGAAATCGA+AGG + chr8_3:26326873-26326892 None:intergenic 50.0%
CGATTTCACAACAGAGGGCA+AGG - chr8_3:26326874-26326893 Msa1284260:intron 50.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 26325627 26327755 26325627 ID=Msa1284260;Name=Msa1284260
chr8_3 mRNA 26325627 26327755 26325627 ID=Msa1284260-mRNA-1;Parent=Msa1284260;Name=Msa1284260-mRNA-1;_AED=0.01;_eAED=0.01;_QI=54|1|1|1|1|1|2|581|157
chr8_3 exon 26325627 26326494 26325627 ID=Msa1284260-mRNA-1:exon:9154;Parent=Msa1284260-mRNA-1
chr8_3 exon 26327515 26327755 26327515 ID=Msa1284260-mRNA-1:exon:9153;Parent=Msa1284260-mRNA-1
chr8_3 five_prime_UTR 26327702 26327755 26327702 ID=Msa1284260-mRNA-1:five_prime_utr;Parent=Msa1284260-mRNA-1
chr8_3 CDS 26327515 26327701 26327515 ID=Msa1284260-mRNA-1:cds;Parent=Msa1284260-mRNA-1
chr8_3 CDS 26326208 26326494 26326208 ID=Msa1284260-mRNA-1:cds;Parent=Msa1284260-mRNA-1
chr8_3 three_prime_UTR 26325627 26326207 26325627 ID=Msa1284260-mRNA-1:three_prime_utr;Parent=Msa1284260-mRNA-1
Gene Sequence

>Msa1284260

ATGGTGCTTGCTGGTAAACTTAGCACTGAAATTGGGATCAAAGCATCCTCTGACAAGTTCTTCAAACTATTCGCATCAAATATTCACGAACTGCAAAACATTTGTGAAAGTGTTCATGAAACCAAGCTGCATCAAGGTGATGAATGGCATCACTCTGATTCAGTTAAACACTGGACTCATGTCCGAGAGGGCAAGGTATACACATGTCATGAGAGTTTCGAAGAAATTGATGAAAAGAACAAAAAAATCGTCCACAAGATCTTCGGTGAAGAAATTGATGAGCACTATAAGGTCTTTAAGCTCATCATTGAAGTGATTGATAAGGCTGATGGCACTACTGCAGTTAAATGGACTGTTGAATATGAGAAGATCAATGAAGATGTTGAACCTCCAAATAGTTGGATGGAATACCTTAGCAAATGCACTCGAGACATTGATGCTCATCTTGTCAAGCAAGCAAAGGTTGCTCCATAA

Protein sequence

>Msa1284260

MVLAGKLSTEIGIKASSDKFFKLFASNIHELQNICESVHETKLHQGDEWHHSDSVKHWTHVREGKVYTCHESFEEIDEKNKKIVHKIFGEEIDEHYKVFKLIIEVIDKADGTTAVKWTVEYEKINEDVEPPNSWMEYLSKCTRDIDAHLVKQAKVAP*