AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0390400


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390400 MtrunA17_Chr1g0175201 97.270 293 5 1 1 290 1 293 0.0 580
Msa0390400 MtrunA17_Chr7g0258611 70.395 304 70 9 1 287 1 301 1.12e-135 385
Msa0390400 MtrunA17_Chr1g0213721 59.533 257 91 6 43 290 6 258 3.51e-99 291
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0390400 AT3G12130.1 50.831 301 83 9 1 290 1 247 7.85e-82 247
Msa0390400 AT5G06770.6 50.935 214 89 7 87 290 10 217 9.23e-58 185
Msa0390400 AT5G06770.6 71.698 53 15 0 20 72 4 56 8.05e-21 89.0
Msa0390400 AT5G06770.1 50.935 214 89 7 87 290 32 239 1.41e-57 185
Msa0390400 AT5G06770.1 67.949 78 19 2 1 72 1 78 1.02e-28 110
Msa0390400 AT5G06770.3 51.244 201 82 7 100 290 18 212 2.59e-54 176
Msa0390400 AT5G06770.2 51.244 201 82 7 100 290 18 212 2.59e-54 176
Msa0390400 AT5G06770.4 51.244 201 82 7 100 290 18 212 2.59e-54 176
Msa0390400 AT3G12130.2 62.658 158 51 4 139 290 20 175 3.48e-53 171
Msa0390400 AT5G06770.5 58.667 150 57 4 141 290 23 167 1.52e-50 164

Find 125 sgRNAs with CRISPR-Local

Find 294 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTTCAATGTTTCTAAGATT+TGG 0.218015 3_2:+1217400 None:intergenic
TCTGCTGAAGGCTGCAAATT+TGG 0.233846 3_2:-1217706 Msa0390400:CDS
GGAGCACCTGGGGTGGATTT+AGG 0.247892 3_2:+1217298 None:intergenic
CTCTATCTCTATCTAGGGTT+AGG 0.287310 3_2:-1220752 Msa0390400:five_prime_UTR
TTGGTCTTGATGTTTCTTCC+AGG 0.287578 3_2:+1217253 None:intergenic
ATGTTTCTTCCAGGTGCGGC+TGG 0.289209 3_2:+1217262 None:intergenic
CCCATTCACCATGGGCAAAA+TGG 0.307326 3_2:+1217674 None:intergenic
GTTCAATGTTTCTAAGATTT+GGG 0.309393 3_2:+1217401 None:intergenic
GATCAGTGTAGAAGCTTCTT+TGG 0.311263 3_2:-1217515 Msa0390400:CDS
TCATCCTTACGGTTAGGGTT+AGG 0.315619 3_2:-1220792 Msa0390400:five_prime_UTR
TAAGATTTGGGTCAGATTCA+TGG 0.329032 3_2:+1217413 None:intergenic
CAGGTTTAAGATTCATCATC+TGG 0.330164 3_2:+1217815 None:intergenic
ACTGATCTTGGCAGTGGAAT+TGG 0.339065 3_2:+1217531 None:intergenic
GCTAAAGGATCCTGCACATT+TGG 0.348312 3_2:-1217214 Msa0390400:CDS
CACTTCTCACATCATGTTCC+CGG 0.349238 3_2:-1217856 Msa0390400:CDS
CAAGCTCTCTATCTCTATCT+AGG 0.349410 3_2:-1220758 Msa0390400:five_prime_UTR
TTCAATTCATCCTTACGGTT+AGG 0.350116 3_2:-1220798 Msa0390400:five_prime_UTR
ATCAACCCTCCCTCGTTTGC+GGG 0.354317 3_2:+1220664 None:intergenic
GCACCTGGGGTGGATTTAGG+TGG 0.358227 3_2:+1217301 None:intergenic
GGTCGAGTTGAGGCTCCTTC+TGG 0.361759 3_2:-1217577 Msa0390400:CDS
TTGAAAATTTGACTCCTGTT+TGG 0.371380 3_2:+1217443 None:intergenic
AGGGTTGATGCTGCTGTTAA+TGG 0.373294 3_2:-1220650 Msa0390400:CDS
TTATTGTTGTTTGTTGCAAA+TGG 0.376679 3_2:-1216960 Msa0390400:three_prime_UTR
CATCCTTACGGTTAGGGTTA+GGG 0.379351 3_2:-1220791 Msa0390400:five_prime_UTR
TCAATTCATCCTTACGGTTA+GGG 0.382082 3_2:-1220797 Msa0390400:five_prime_UTR
TCTTTGGCTGGAGCTATCAT+TGG 0.389153 3_2:-1217499 Msa0390400:CDS
GTTGAGGCTCCTTCTGGTCT+AGG 0.393390 3_2:-1217571 Msa0390400:CDS
CCACCACCAGCAGGAGCACC+TGG 0.400750 3_2:+1217286 None:intergenic
AGCATTGCTGGCTGTCCATT+TGG 0.402746 3_2:-1217889 Msa0390400:CDS
TGAATTGAACGGAGGAAGAT+GGG 0.406078 3_2:+1220812 None:intergenic
GAACGGAGGAAGATGGGGTT+TGG 0.413087 3_2:+1220818 None:intergenic
CTCCGTTCAATTCATCCTTA+CGG 0.421055 3_2:-1220803 Msa0390400:five_prime_UTR
GGTGGGGCGGCAACATTTCT+AGG 0.421558 3_2:+1217784 None:intergenic
GGTCTAGGCGGTACTAGCTT+TGG 0.431440 3_2:-1217556 Msa0390400:CDS
AGAAGCTTCTACACTGATCT+TGG 0.443492 3_2:+1217519 None:intergenic
TATTGTTGTTTGTTGCAAAT+GGG 0.444298 3_2:-1216959 Msa0390400:three_prime_UTR
AGCAAAATTCTCACACAGCT+TGG 0.448378 3_2:+1217234 None:intergenic
GCCGCTGAATTGCGAAAGAT+AGG 0.451682 3_2:-1217166 Msa0390400:CDS
GGTGGTGGCCCAGCCGCACC+TGG 0.454343 3_2:-1217271 Msa0390400:CDS
TCTATCTCTATCTAGGGTTA+GGG 0.454819 3_2:-1220751 Msa0390400:five_prime_UTR
GCAACAGAAATGGACTCAAC+TGG 0.458170 3_2:-1219643 Msa0390400:intron
CATCAACCCTCCCTCGTTTG+CGG 0.460993 3_2:+1220663 None:intergenic
ATGAATTGAACGGAGGAAGA+TGG 0.465169 3_2:+1220811 None:intergenic
CCAGGTGCTCCTGCTGGTGG+TGG 0.465336 3_2:-1217286 Msa0390400:CDS
CTTAGAAACATTGAACTTGA+GGG 0.465557 3_2:-1217394 Msa0390400:CDS
GGCATACGACCAACATTTGT+AGG 0.466912 3_2:+1217601 None:intergenic
CACCTGGGGTGGATTTAGGT+GGG 0.468049 3_2:+1217302 None:intergenic
ACAAATGTTGGTCGTATGCC+TGG 0.469504 3_2:-1217598 Msa0390400:CDS
GCGGCTGGGCCACCACCAGC+AGG 0.473223 3_2:+1217277 None:intergenic
TATTATTAATCTTATTGTTG+TGG 0.473354 3_2:-1217060 Msa0390400:three_prime_UTR
TCCACCCCAGGTGCTCCTGC+TGG 0.475142 3_2:-1217292 Msa0390400:CDS
TTCGCAATTCAGCGGCTCCA+TGG 0.475467 3_2:+1217173 None:intergenic
AGTGTAGAAGCTTCTTTGGC+TGG 0.476113 3_2:-1217511 Msa0390400:CDS
CCAACATTTGTAGGTGCCAT+TGG 0.476227 3_2:+1217610 None:intergenic
AAGCAGATATGTCGCCAAAC+AGG 0.477279 3_2:-1217457 Msa0390400:CDS
TGTTTCTTCCAGGTGCGGCT+GGG 0.483249 3_2:+1217263 None:intergenic
TCATCAACTGATGGAGCAAA+AGG 0.487156 3_2:+1217640 None:intergenic
AAGTGACAACCCTCACCAAA+TGG 0.487932 3_2:+1217874 None:intergenic
TCGCAATTCAGCGGCTCCAT+GGG 0.491844 3_2:+1217174 None:intergenic
GTCTAAAATTGACCTTGGTC+AGG 0.492004 3_2:-1217142 Msa0390400:exon
TGCTGGCTGTCCATTTGGTG+AGG 0.513418 3_2:-1217884 Msa0390400:CDS
GGCTGGAGCTATCATTGGAA+AGG 0.517932 3_2:-1217494 Msa0390400:CDS
CCATTGTTAGAGACTGGTGG+TGG 0.518004 3_2:+1217766 None:intergenic
ACATTTCTAGGAGGTGCAGC+AGG 0.522238 3_2:+1217796 None:intergenic
GCTGGCTGTCCATTTGGTGA+GGG 0.526668 3_2:-1217883 Msa0390400:CDS
TCTTAGAAACATTGAACTTG+AGG 0.528176 3_2:-1217395 Msa0390400:CDS
ACATCTTTCTCCAAATGTGC+AGG 0.531941 3_2:+1217204 None:intergenic
ACCCCAGGTGCTCCTGCTGG+TGG 0.532816 3_2:-1217289 Msa0390400:CDS
GCTGGAGCTATCATTGGAAA+GGG 0.536163 3_2:-1217493 Msa0390400:CDS
ACCGAGTTCCCATTCACCAT+GGG 0.537718 3_2:+1217666 None:intergenic
GGCAACGGCATTATAACCAC+CGG 0.537881 3_2:+1217837 None:intergenic
CATCCATTGTAGTAAGAGAA+AGG 0.538183 3_2:+1220687 None:intergenic
GCTCCTTTCTCTTACTACAA+TGG 0.545646 3_2:-1220690 Msa0390400:exon
GCCCATGGTGAATGGGAACT+CGG 0.546163 3_2:-1217667 Msa0390400:CDS
ACCTGGGGTGGATTTAGGTG+GGG 0.547756 3_2:+1217303 None:intergenic
AACAAGTTTAATTCTGCTGA+AGG 0.547801 3_2:-1217718 Msa0390400:CDS
AACAATAGTAGTAATAGCCC+TGG 0.548540 3_2:+1217095 None:intergenic
GCCCCACCTAAATCCACCCC+AGG 0.549993 3_2:-1217304 Msa0390400:CDS
GCAGAACCATTGTTAGAGAC+TGG 0.559543 3_2:+1217760 None:intergenic
TCCTATCTTTCGCAATTCAG+CGG 0.559614 3_2:+1217165 None:intergenic
CTAGTACCGCCTAGACCAGA+AGG 0.560068 3_2:+1217562 None:intergenic
TGGATGCCCGCAAACGAGGG+AGG 0.563890 3_2:-1220670 Msa0390400:CDS
AAGCTCTCTATCTCTATCTA+GGG 0.568388 3_2:-1220757 Msa0390400:five_prime_UTR
AAGATTCATCATCTGGGCAA+CGG 0.568550 3_2:+1217822 None:intergenic
GGACGGTGATCATCAACTGA+TGG 0.568940 3_2:+1217631 None:intergenic
CCAATGGCACCTACAAATGT+TGG 0.569357 3_2:-1217610 Msa0390400:CDS
TTCTACACTGATCTTGGCAG+TGG 0.569888 3_2:+1217525 None:intergenic
GATAGAAGAGAAGAGAAGAA+AGG 0.570911 3_2:+1220864 None:intergenic
GAATTGAACGGAGGAAGATG+GGG 0.573635 3_2:+1220813 None:intergenic
CATTTGTAGGTGCCATTGGA+CGG 0.575412 3_2:+1217614 None:intergenic
ACCAGCAGGAGCACCTGGGG+TGG 0.581262 3_2:+1217291 None:intergenic
ACCACCAGCAGGAGCACCTG+GGG 0.582568 3_2:+1217288 None:intergenic
CAATGGATGCCCGCAAACGA+GGG 0.583791 3_2:-1220673 Msa0390400:CDS
GAAAGATGTCACTTTGCCCA+TGG 0.584192 3_2:-1217190 Msa0390400:CDS
CTTGATGTTTCTTCCAGGTG+CGG 0.585145 3_2:+1217258 None:intergenic
ATAGAGATAGAGAGCTTGAG+AGG 0.586783 3_2:+1220763 None:intergenic
GAAAGAGATGAGAGAAGCGA+AGG 0.588541 3_2:+1220840 None:intergenic
ACAATGGATGCCCGCAAACG+AGG 0.590226 3_2:-1220674 Msa0390400:CDS
GAAATGGACTCAACTGGTGT+AGG 0.590424 3_2:-1219637 Msa0390400:CDS
CACCACCAGCAGGAGCACCT+GGG 0.590461 3_2:+1217287 None:intergenic
AGGTTTAAGATTCATCATCT+GGG 0.591191 3_2:+1217816 None:intergenic
AATTAAACTTGTTACATATG+CGG 0.591258 3_2:+1217728 None:intergenic
CCACCACCAGTCTCTAACAA+TGG 0.591961 3_2:-1217766 Msa0390400:CDS
TACCGAGTTCCCATTCACCA+TGG 0.592664 3_2:+1217665 None:intergenic
TAGGAGTCTAAAATTGACCT+TGG 0.593457 3_2:-1217147 Msa0390400:exon
TGTGGATTGCTACTTAGTAG+TGG 0.595136 3_2:-1217042 Msa0390400:three_prime_UTR
GGATGCCCGCAAACGAGGGA+GGG 0.598945 3_2:-1220669 Msa0390400:CDS
AGTTGATGATCACCGTCCAA+TGG 0.605823 3_2:-1217626 Msa0390400:CDS
AAACCCTAACCCTAACCGTA+AGG 0.606064 3_2:+1220788 None:intergenic
ATTGTTAGAGACTGGTGGTG+GGG 0.606388 3_2:+1217768 None:intergenic
GAAGGAGCCTCAACTCGACC+AGG 0.607588 3_2:+1217580 None:intergenic
TCGTATGCCTGGTCGAGTTG+AGG 0.614018 3_2:-1217587 Msa0390400:CDS
GGAGCTATCATTGGAAAGGG+TGG 0.621933 3_2:-1217490 Msa0390400:CDS
GTTAGAGACTGGTGGTGGGG+CGG 0.623695 3_2:+1217771 None:intergenic
AACCGTAAGGATGAATTGAA+CGG 0.634433 3_2:+1220801 None:intergenic
CATTGTTAGAGACTGGTGGT+GGG 0.635968 3_2:+1217767 None:intergenic
AATTGCACAAGCAAGTAACA+TGG 0.648235 3_2:-1217359 Msa0390400:CDS
TCCGTCAAGAAAACCAAACA+AGG 0.648477 3_2:-1220626 Msa0390400:intron
GCAACGGCATTATAACCACC+GGG 0.654418 3_2:+1217838 None:intergenic
TTCTCACATCATGTTCCCGG+TGG 0.667160 3_2:-1217853 Msa0390400:CDS
GGGGCGGCAACATTTCTAGG+AGG 0.676956 3_2:+1217787 None:intergenic
GAACCATTGTTAGAGACTGG+TGG 0.695821 3_2:+1217763 None:intergenic
GAGGCTCCTTCTGGTCTAGG+CGG 0.707296 3_2:-1217568 Msa0390400:CDS
CGTAAGGATGAATTGAACGG+AGG 0.709166 3_2:+1220804 None:intergenic
CAAAGCAGCAAAAGACACTG+AGG 0.763743 3_2:+1220902 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAACAAAATTTAAGAT+TGG - chr3_2:1216930-1216949 Msa0390400:three_prime_UTR 10.0%
!!! TATTTTTTAAATTTAGTTGT+TGG - chr3_2:1217424-1217443 Msa0390400:CDS 10.0%
!! CAATTACAAATTTATTTATA+TGG + chr3_2:1217503-1217522 None:intergenic 10.0%
!!! CTTTTAAGTAATAATATTTT+TGG + chr3_2:1218134-1218153 None:intergenic 10.0%
!! AATAAATAAAAAGTTTGAAG+AGG + chr3_2:1217289-1217308 None:intergenic 15.0%
!!! AAAAGAAAGAATAAGATTTT+TGG - chr3_2:1218149-1218168 Msa0390400:intron 15.0%
!! CTATTTACAAGATAATAAAA+TGG - chr3_2:1218655-1218674 Msa0390400:intron 15.0%
!!! AGATTTTAAAAATTACAATC+TGG + chr3_2:1218862-1218881 None:intergenic 15.0%
!!! TTTTCATAACAATAATACTT+TGG - chr3_2:1219918-1219937 Msa0390400:intron 15.0%
!! TATTATTAATCTTATTGTTG+TGG - chr3_2:1220818-1220837 Msa0390400:five_prime_UTR 15.0%
!!! TTAAACAGTTTTTTAAGTTC+AGG + chr3_2:1217790-1217809 None:intergenic 20.0%
!! ACAACTTTATAAAAAAAACC+TGG - chr3_2:1217906-1217925 Msa0390400:intron 20.0%
!!! TTCTTTTAGATAAAGGTAAT+TGG + chr3_2:1217961-1217980 None:intergenic 20.0%
!!! TTTAGGTTTCTTTTAGATAA+AGG + chr3_2:1217968-1217987 None:intergenic 20.0%
!! ATCAAATTGTAACAGAATAA+TGG - chr3_2:1218436-1218455 Msa0390400:intron 20.0%
!! ACAGAATAATGGTTTATTAA+TGG - chr3_2:1218447-1218466 Msa0390400:intron 20.0%
!! TTACAAGATAATAAAATGGT+TGG - chr3_2:1218659-1218678 Msa0390400:intron 20.0%
!! GTTTAGTCAATTAAGAAATA+CGG - chr3_2:1219034-1219053 Msa0390400:intron 20.0%
!! TTTAATTGATGTAACATAAC+AGG + chr3_2:1219336-1219355 None:intergenic 20.0%
!! ATATTATAGGCAATGATATA+TGG - chr3_2:1219478-1219497 Msa0390400:intron 20.0%
!!! TTATTTTGATAGTAGTTAAC+AGG - chr3_2:1219869-1219888 Msa0390400:intron 20.0%
!!! AATTAAACTTGTTACATATG+CGG + chr3_2:1220153-1220172 None:intergenic 20.0%
!!! TACTACTTTTGCTTTATATA+TGG - chr3_2:1220959-1220978 Msa0390400:five_prime_UTR 20.0%
!!! TTTCACTTTTTCTTCTTCTT+TGG - chr3_2:1217155-1217174 Msa0390400:exon 25.0%
! TTGTTGGATTTATGTTTGTT+TGG - chr3_2:1217440-1217459 Msa0390400:CDS 25.0%
!! ATATCAACTAAAGAAGCATA+TGG + chr3_2:1217593-1217612 None:intergenic 25.0%
!!! CAATTACGGTTTAGAATTTT+GGG + chr3_2:1217991-1218010 None:intergenic 25.0%
!! TTAATGTTTTGCAACAGAAA+TGG - chr3_2:1218225-1218244 Msa0390400:intron 25.0%
! TAATGGTTTATTAATGGAGT+TGG - chr3_2:1218453-1218472 Msa0390400:intron 25.0%
! TTTATTAATGGAGTTGGAAA+AGG - chr3_2:1218459-1218478 Msa0390400:intron 25.0%
! AGCAAGATTTACAGTAATTA+AGG + chr3_2:1218565-1218584 None:intergenic 25.0%
! GCTGATAAGTCATTATTAAA+TGG + chr3_2:1218590-1218609 None:intergenic 25.0%
! ACTACTTAGTTGAAGTAATA+GGG + chr3_2:1218766-1218785 None:intergenic 25.0%
! AACTACTTAGTTGAAGTAAT+AGG + chr3_2:1218767-1218786 None:intergenic 25.0%
! ATTAAGAAATACGGAATTCT+TGG - chr3_2:1219043-1219062 Msa0390400:intron 25.0%
! ATGTTAGTATTAAAGAGAGT+TGG + chr3_2:1219277-1219296 None:intergenic 25.0%
! ATATCAATGGCTATAACAAT+TGG + chr3_2:1219600-1219619 None:intergenic 25.0%
!! GAATGTTATTTGTTAGCTTA+TGG + chr3_2:1219627-1219646 None:intergenic 25.0%
! ACATTCCTATATTCTTCTTA+AGG - chr3_2:1219823-1219842 Msa0390400:intron 25.0%
! TAGTTAACAGGAAATGAAAA+GGG - chr3_2:1219881-1219900 Msa0390400:intron 25.0%
!!! GTTCAATGTTTCTAAGATTT+GGG + chr3_2:1220480-1220499 None:intergenic 25.0%
!!! AGTTCAATGTTTCTAAGATT+TGG + chr3_2:1220481-1220500 None:intergenic 25.0%
!!! TTATTGTTGTTTGTTGCAAA+TGG - chr3_2:1220918-1220937 Msa0390400:five_prime_UTR 25.0%
!!! TATTGTTGTTTGTTGCAAAT+GGG - chr3_2:1220919-1220938 Msa0390400:five_prime_UTR 25.0%
!!! TGCTGCTTTGTGTTTTTTTT+TGG - chr3_2:1216989-1217008 Msa0390400:three_prime_UTR 30.0%
TCTGTGTTCTTGAATTTGAA+AGG - chr3_2:1217326-1217345 Msa0390400:CDS 30.0%
! TCTTTAGTTGATATGAAGCA+CGG - chr3_2:1217599-1217618 Msa0390400:CDS 30.0%
TTCAGTGTAATTACAAGTGT+TGG - chr3_2:1217671-1217690 Msa0390400:CDS 30.0%
TCAGTGTAATTACAAGTGTT+GGG - chr3_2:1217672-1217691 Msa0390400:CDS 30.0%
! TGTATATGGTGTTTAAAACC+AGG + chr3_2:1217927-1217946 None:intergenic 30.0%
!! TGGCTTTGATTTGATGTATA+TGG + chr3_2:1217941-1217960 None:intergenic 30.0%
!! GCAATTACGGTTTAGAATTT+TGG + chr3_2:1217992-1218011 None:intergenic 30.0%
! TTTAGGATGATTGCTTCAAT+TGG - chr3_2:1218043-1218062 Msa0390400:intron 30.0%
AGATTAGAACCTGAAAAACT+TGG + chr3_2:1218287-1218306 None:intergenic 30.0%
ATCTAATTCTGCATCTTAAC+TGG - chr3_2:1218371-1218390 Msa0390400:intron 30.0%
TCTAATTCTGCATCTTAACT+GGG - chr3_2:1218372-1218391 Msa0390400:intron 30.0%
! GGAAAAGGATAATAATTTGC+AGG - chr3_2:1218474-1218493 Msa0390400:intron 30.0%
TAAATAGCTTACCAATTGGA+AGG + chr3_2:1218642-1218661 None:intergenic 30.0%
CTTGTAAATAGCTTACCAAT+TGG + chr3_2:1218646-1218665 None:intergenic 30.0%
GATAATAAAATGGTTGGATC+AGG - chr3_2:1218665-1218684 Msa0390400:intron 30.0%
TACTTAGTTGAAGTAATAGG+GGG + chr3_2:1218764-1218783 None:intergenic 30.0%
CTACTTAGTTGAAGTAATAG+GGG + chr3_2:1218765-1218784 None:intergenic 30.0%
!! AAGTAGTTCTATCAAGCTTT+TGG - chr3_2:1218779-1218798 Msa0390400:intron 30.0%
! AGCTTTTGGTAAAACATTAG+AGG - chr3_2:1218793-1218812 Msa0390400:intron 30.0%
TTGGTAGAAGGTTCAATATT+AGG - chr3_2:1219062-1219081 Msa0390400:intron 30.0%
!! GTGTTTTGTTCACATAAATC+TGG - chr3_2:1219104-1219123 Msa0390400:intron 30.0%
GAAAAACTAAAACACTGCAA+TGG + chr3_2:1219150-1219169 None:intergenic 30.0%
!!! TGCAGTGTTTTAGTTTTTCT+TGG - chr3_2:1219151-1219170 Msa0390400:intron 30.0%
! TCAACCATCTTTTCTTCAAT+AGG - chr3_2:1219244-1219263 Msa0390400:intron 30.0%
TTCATCAACTAAAATCCCAT+TGG - chr3_2:1219421-1219440 Msa0390400:intron 30.0%
CATCTCTTGTAGCATATTAT+AGG - chr3_2:1219465-1219484 Msa0390400:intron 30.0%
!!! ACAATTGGTTTTCTTTCAGA+GGG + chr3_2:1219585-1219604 None:intergenic 30.0%
!!! AACAATTGGTTTTCTTTCAG+AGG + chr3_2:1219586-1219605 None:intergenic 30.0%
TTGTTATAGCCATTGATATG+TGG - chr3_2:1219601-1219620 Msa0390400:intron 30.0%
TTATAACCAGTCAGATAATG+CGG + chr3_2:1219669-1219688 None:intergenic 30.0%
TTATAAGCCAACATAGAGTT+GGG - chr3_2:1219683-1219702 Msa0390400:intron 30.0%
TTCCTATATTCTTCTTAAGG+TGG - chr3_2:1219826-1219845 Msa0390400:intron 30.0%
TTCCACCTTAAGAAGAATAT+AGG + chr3_2:1219831-1219850 None:intergenic 30.0%
GTAGTTAACAGGAAATGAAA+AGG - chr3_2:1219880-1219899 Msa0390400:intron 30.0%
AGTTAACAGGAAATGAAAAG+GGG - chr3_2:1219882-1219901 Msa0390400:intron 30.0%
TGCAAAACAAGAAAACATCA+TGG + chr3_2:1219970-1219989 None:intergenic 30.0%
! AGGTTTAAGATTCATCATCT+GGG + chr3_2:1220065-1220084 None:intergenic 30.0%
AACAAGTTTAATTCTGCTGA+AGG - chr3_2:1220160-1220179 Msa0390400:intron 30.0%
TTGAAAATTTGACTCCTGTT+TGG + chr3_2:1220438-1220457 None:intergenic 30.0%
TCTTAGAAACATTGAACTTG+AGG - chr3_2:1220483-1220502 Msa0390400:intron 30.0%
CTTAGAAACATTGAACTTGA+GGG - chr3_2:1220484-1220503 Msa0390400:intron 30.0%
! TTTTTCTTCTTTTGTTAGCC+AGG - chr3_2:1220765-1220784 Msa0390400:five_prime_UTR 30.0%
! TTTTCTTCTTTTGTTAGCCA+GGG - chr3_2:1220766-1220785 Msa0390400:five_prime_UTR 30.0%
GATAGAAGAGAAGAGAAGAA+AGG + chr3_2:1217017-1217036 None:intergenic 35.0%
AACCGTAAGGATGAATTGAA+CGG + chr3_2:1217080-1217099 None:intergenic 35.0%
TTCAATTCATCCTTACGGTT+AGG - chr3_2:1217080-1217099 Msa0390400:three_prime_UTR 35.0%
TCAATTCATCCTTACGGTTA+GGG - chr3_2:1217081-1217100 Msa0390400:three_prime_UTR 35.0%
AAGCTCTCTATCTCTATCTA+GGG - chr3_2:1217121-1217140 Msa0390400:three_prime_UTR 35.0%
! TCTATCTCTATCTAGGGTTA+GGG - chr3_2:1217127-1217146 Msa0390400:three_prime_UTR 35.0%
CATCCATTGTAGTAAGAGAA+AGG + chr3_2:1217194-1217213 None:intergenic 35.0%
!!! ACCTTGTTTGGTTTTCTTGA+CGG + chr3_2:1217256-1217275 None:intergenic 35.0%
TGAATTTCACATGACAAGCA+TGG + chr3_2:1217570-1217589 None:intergenic 35.0%
! CAGTGTAATTACAAGTGTTG+GGG - chr3_2:1217673-1217692 Msa0390400:CDS 35.0%
TCACTGGAATTTACTATCGA+TGG - chr3_2:1217843-1217862 Msa0390400:CDS 35.0%
!!! CGGTTTAGAATTTTGGGTTT+AGG + chr3_2:1217985-1218004 None:intergenic 35.0%
ACACAACTCTGTTGCAATTA+CGG + chr3_2:1218005-1218024 None:intergenic 35.0%
!! TCAGAGAGTGTTCAAAGTTT+AGG - chr3_2:1218026-1218045 Msa0390400:intron 35.0%
CTATATCAACCTTCAACTCA+GGG + chr3_2:1218096-1218115 None:intergenic 35.0%
ACTATATCAACCTTCAACTC+AGG + chr3_2:1218097-1218116 None:intergenic 35.0%
AACCTGAAAAACTTGGTACA+AGG + chr3_2:1218280-1218299 None:intergenic 35.0%
! GGGTATTCTAAGCTTTATAC+AGG - chr3_2:1218392-1218411 Msa0390400:intron 35.0%
TTTAGTGTTCCCATTGTCAT+GGG + chr3_2:1218504-1218523 None:intergenic 35.0%
ATTTAGTGTTCCCATTGTCA+TGG + chr3_2:1218505-1218524 None:intergenic 35.0%
TTAGACACAGACGCATAATT+TGG + chr3_2:1218699-1218718 None:intergenic 35.0%
GCATAAACAAAGTTCTCTCT+TGG + chr3_2:1218735-1218754 None:intergenic 35.0%
AAATTACAATCTGGTGAGAG+CGG + chr3_2:1218853-1218872 None:intergenic 35.0%
AACACAGAACAAGCAATCAA+AGG + chr3_2:1218982-1219001 None:intergenic 35.0%
AATACGGAATTCTTGGTAGA+AGG - chr3_2:1219050-1219069 Msa0390400:intron 35.0%
! AATCTAGACTTAGCTGGTTT+GGG + chr3_2:1219225-1219244 None:intergenic 35.0%
AGCACCTATTGAAGAAAAGA+TGG + chr3_2:1219251-1219270 None:intergenic 35.0%
AGATGAGAAAAACCAATGGT+AGG + chr3_2:1219450-1219469 None:intergenic 35.0%
CAAGAGATGAGAAAAACCAA+TGG + chr3_2:1219454-1219473 None:intergenic 35.0%
ATAGGCAATGATATATGGTG+TGG - chr3_2:1219483-1219502 Msa0390400:intron 35.0%
GTAGTGTGTTATCTAACCTT+TGG - chr3_2:1219528-1219547 Msa0390400:intron 35.0%
! AACCTTTGGTGGATATGATA+TGG - chr3_2:1219542-1219561 Msa0390400:intron 35.0%
AACCATATCATATCCACCAA+AGG + chr3_2:1219547-1219566 None:intergenic 35.0%
GTTATAAGCCAACATAGAGT+TGG - chr3_2:1219682-1219701 Msa0390400:intron 35.0%
! CAGGTTTAAGATTCATCATC+TGG + chr3_2:1220066-1220085 None:intergenic 35.0%
TAAGATTTGGGTCAGATTCA+TGG + chr3_2:1220468-1220487 None:intergenic 35.0%
AATTGCACAAGCAAGTAACA+TGG - chr3_2:1220519-1220538 Msa0390400:intron 35.0%
! CTGTGTGAGAATTTTGCTAA+AGG - chr3_2:1220649-1220668 Msa0390400:CDS 35.0%
! TAGGAGTCTAAAATTGACCT+TGG - chr3_2:1220731-1220750 Msa0390400:five_prime_UTR 35.0%
AACAATAGTAGTAATAGCCC+TGG + chr3_2:1220786-1220805 None:intergenic 35.0%
TGAATTGAACGGAGGAAGAT+GGG + chr3_2:1217069-1217088 None:intergenic 40.0%
ATGAATTGAACGGAGGAAGA+TGG + chr3_2:1217070-1217089 None:intergenic 40.0%
CTCCGTTCAATTCATCCTTA+CGG - chr3_2:1217075-1217094 Msa0390400:three_prime_UTR 40.0%
ATAGAGATAGAGAGCTTGAG+AGG + chr3_2:1217118-1217137 None:intergenic 40.0%
CAAGCTCTCTATCTCTATCT+AGG - chr3_2:1217120-1217139 Msa0390400:three_prime_UTR 40.0%
! CTCTATCTCTATCTAGGGTT+AGG - chr3_2:1217126-1217145 Msa0390400:three_prime_UTR 40.0%
GCTCCTTTCTCTTACTACAA+TGG - chr3_2:1217188-1217207 Msa0390400:CDS 40.0%
TCCGTCAAGAAAACCAAACA+AGG - chr3_2:1217252-1217271 Msa0390400:CDS 40.0%
GGCGAAAAAGAAACCTTGTT+TGG + chr3_2:1217268-1217287 None:intergenic 40.0%
TTGCTTCAACCTATGAAGCA+CGG + chr3_2:1217737-1217756 None:intergenic 40.0%
TTCGACAACAGAGTTTCAGA+GGG + chr3_2:1217819-1217838 None:intergenic 40.0%
! ATTGCTTCAATTGGAAGCAC+AGG - chr3_2:1218052-1218071 Msa0390400:intron 40.0%
!! AGCCTTGTACCAAGTTTTTC+AGG - chr3_2:1218275-1218294 Msa0390400:intron 40.0%
TAGCTTACCAATTGGAAGGT+GGG + chr3_2:1218638-1218657 None:intergenic 40.0%
ATAGCTTACCAATTGGAAGG+TGG + chr3_2:1218639-1218658 None:intergenic 40.0%
TAGTTGAAGTAATAGGGGGA+CGG + chr3_2:1218760-1218779 None:intergenic 40.0%
TGCTTGTTCTGTGTTTACGT+AGG - chr3_2:1218987-1219006 Msa0390400:intron 40.0%
GAATCTAGACTTAGCTGGTT+TGG + chr3_2:1219226-1219245 None:intergenic 40.0%
TGGTTGAATCTAGACTTAGC+TGG + chr3_2:1219231-1219250 None:intergenic 40.0%
AGACTTCTGCATCATGTACA+AGG - chr3_2:1219355-1219374 Msa0390400:intron 40.0%
GACTTCTGCATCATGTACAA+GGG - chr3_2:1219356-1219375 Msa0390400:intron 40.0%
GATGAAACCAGATCAACTCA+TGG + chr3_2:1219407-1219426 None:intergenic 40.0%
ACCAATGGTAGGTTTCCAAT+GGG + chr3_2:1219439-1219458 None:intergenic 40.0%
AACCAATGGTAGGTTTCCAA+TGG + chr3_2:1219440-1219459 None:intergenic 40.0%
GTGTGTTATCTAACCTTTGG+TGG - chr3_2:1219531-1219550 Msa0390400:intron 40.0%
!! TTGGTTTTCTTTCAGAGGGA+GGG + chr3_2:1219581-1219600 None:intergenic 40.0%
!!! ATTGGTTTTCTTTCAGAGGG+AGG + chr3_2:1219582-1219601 None:intergenic 40.0%
AGCTTATGGCCACATATCAA+TGG + chr3_2:1219613-1219632 None:intergenic 40.0%
CGGATCAGAACAATGACTAT+CGG + chr3_2:1219649-1219668 None:intergenic 40.0%
!!! TTCTTGTTTTGCAGCATTGC+TGG - chr3_2:1219977-1219996 Msa0390400:intron 40.0%
AAGATTCATCATCTGGGCAA+CGG + chr3_2:1220059-1220078 None:intergenic 40.0%
TCATCAACTGATGGAGCAAA+AGG + chr3_2:1220241-1220260 None:intergenic 40.0%
AGAAGCTTCTACACTGATCT+TGG + chr3_2:1220362-1220381 None:intergenic 40.0%
GATCAGTGTAGAAGCTTCTT+TGG - chr3_2:1220363-1220382 Msa0390400:intron 40.0%
!! TTGGTCTTGATGTTTCTTCC+AGG + chr3_2:1220628-1220647 None:intergenic 40.0%
AGCAAAATTCTCACACAGCT+TGG + chr3_2:1220647-1220666 None:intergenic 40.0%
ACATCTTTCTCCAAATGTGC+AGG + chr3_2:1220677-1220696 None:intergenic 40.0%
TCCTATCTTTCGCAATTCAG+CGG + chr3_2:1220716-1220735 None:intergenic 40.0%
! GTCTAAAATTGACCTTGGTC+AGG - chr3_2:1220736-1220755 Msa0390400:five_prime_UTR 40.0%
! GAAAAAAGTACACCTGACCA+AGG + chr3_2:1220751-1220770 None:intergenic 40.0%
! TGTGGATTGCTACTTAGTAG+TGG - chr3_2:1220836-1220855 Msa0390400:five_prime_UTR 40.0%
CAAAGCAGCAAAAGACACTG+AGG + chr3_2:1216979-1216998 None:intergenic 45.0%
GAAAGAGATGAGAGAAGCGA+AGG + chr3_2:1217041-1217060 None:intergenic 45.0%
GAATTGAACGGAGGAAGATG+GGG + chr3_2:1217068-1217087 None:intergenic 45.0%
CGTAAGGATGAATTGAACGG+AGG + chr3_2:1217077-1217096 None:intergenic 45.0%
TCATCCTTACGGTTAGGGTT+AGG - chr3_2:1217086-1217105 Msa0390400:three_prime_UTR 45.0%
CATCCTTACGGTTAGGGTTA+GGG - chr3_2:1217087-1217106 Msa0390400:three_prime_UTR 45.0%
AAACCCTAACCCTAACCGTA+AGG + chr3_2:1217093-1217112 None:intergenic 45.0%
!! AGGGTTGATGCTGCTGTTAA+TGG - chr3_2:1217228-1217247 Msa0390400:CDS 45.0%
CTTCGACAACAGAGTTTCAG+AGG + chr3_2:1217820-1217839 None:intergenic 45.0%
TCTGTTGTCGAAGTAGTCAC+TGG - chr3_2:1217827-1217846 Msa0390400:CDS 45.0%
! TTCACATGACCCTGAGTTGA+AGG - chr3_2:1218084-1218103 Msa0390400:intron 45.0%
! GCAACAGAAATGGACTCAAC+TGG - chr3_2:1218235-1218254 Msa0390400:intron 45.0%
! GAAATGGACTCAACTGGTGT+AGG - chr3_2:1218241-1218260 Msa0390400:intron 45.0%
TGATGAACCCACCTTCCAAT+TGG - chr3_2:1218628-1218647 Msa0390400:intron 45.0%
CCAATGCTACAAAGCTGATC+AGG + chr3_2:1218918-1218937 None:intergenic 45.0%
! CCTGATCAGCTTTGTAGCAT+TGG - chr3_2:1218915-1218934 Msa0390400:intron 45.0%
GTACAACAGTTGGAGAGAAG+AGG + chr3_2:1219187-1219206 None:intergenic 45.0%
! AGTGAGGAGAGTACAACAGT+TGG + chr3_2:1219197-1219216 None:intergenic 45.0%
CAGGTGATTAGACTTGACTG+TGG + chr3_2:1219317-1219336 None:intergenic 45.0%
!! ACAGACACCATGAGTTGATC+TGG - chr3_2:1219397-1219416 Msa0390400:intron 45.0%
TCCCATTGGAAACCTACCAT+TGG - chr3_2:1219435-1219454 Msa0390400:intron 45.0%
TCTGATCCGCATTATCTGAC+TGG - chr3_2:1219660-1219679 Msa0390400:intron 45.0%
CAACATAGAGTTGGGCACTT+GGG - chr3_2:1219691-1219710 Msa0390400:intron 45.0%
! GATGCAGTTGCGGATTAACT+TGG - chr3_2:1219754-1219773 Msa0390400:intron 45.0%
AAGTGACAACCCTCACCAAA+TGG + chr3_2:1220007-1220026 None:intergenic 45.0%
CACTTCTCACATCATGTTCC+CGG - chr3_2:1220022-1220041 Msa0390400:intron 45.0%
! ATTGTTAGAGACTGGTGGTG+GGG + chr3_2:1220113-1220132 None:intergenic 45.0%
CATTGTTAGAGACTGGTGGT+GGG + chr3_2:1220114-1220133 None:intergenic 45.0%
GAACCATTGTTAGAGACTGG+TGG + chr3_2:1220118-1220137 None:intergenic 45.0%
GCAGAACCATTGTTAGAGAC+TGG + chr3_2:1220121-1220140 None:intergenic 45.0%
TCTGCTGAAGGCTGCAAATT+TGG - chr3_2:1220172-1220191 Msa0390400:intron 45.0%
! CCATTTTGCCCATGGTGAAT+GGG - chr3_2:1220204-1220223 Msa0390400:intron 45.0%
!! AGTTGATGATCACCGTCCAA+TGG - chr3_2:1220252-1220271 Msa0390400:intron 45.0%
!! CATTTGTAGGTGCCATTGGA+CGG + chr3_2:1220267-1220286 None:intergenic 45.0%
! CCAACATTTGTAGGTGCCAT+TGG + chr3_2:1220271-1220290 None:intergenic 45.0%
CCAATGGCACCTACAAATGT+TGG - chr3_2:1220268-1220287 Msa0390400:intron 45.0%
GGCATACGACCAACATTTGT+AGG + chr3_2:1220280-1220299 None:intergenic 45.0%
ACAAATGTTGGTCGTATGCC+TGG - chr3_2:1220280-1220299 Msa0390400:intron 45.0%
ACTGATCTTGGCAGTGGAAT+TGG + chr3_2:1220350-1220369 None:intergenic 45.0%
TTCTACACTGATCTTGGCAG+TGG + chr3_2:1220356-1220375 None:intergenic 45.0%
AGTGTAGAAGCTTCTTTGGC+TGG - chr3_2:1220367-1220386 Msa0390400:intron 45.0%
TCTTTGGCTGGAGCTATCAT+TGG - chr3_2:1220379-1220398 Msa0390400:intron 45.0%
GCTGGAGCTATCATTGGAAA+GGG - chr3_2:1220385-1220404 Msa0390400:intron 45.0%
AAGCAGATATGTCGCCAAAC+AGG - chr3_2:1220421-1220440 Msa0390400:intron 45.0%
CTTGATGTTTCTTCCAGGTG+CGG + chr3_2:1220623-1220642 None:intergenic 45.0%
GCTAAAGGATCCTGCACATT+TGG - chr3_2:1220664-1220683 Msa0390400:CDS 45.0%
!! GAAAGATGTCACTTTGCCCA+TGG - chr3_2:1220688-1220707 Msa0390400:exon 45.0%
TTAGCAGTATCGCCGTGTCA+GGG + chr3_2:1217632-1217651 None:intergenic 50.0%
ATTAGCAGTATCGCCGTGTC+AGG + chr3_2:1217633-1217652 None:intergenic 50.0%
!! TACAAGTGTTGGGGTCGTGT+CGG - chr3_2:1217682-1217701 Msa0390400:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr3_2:1217726-1217745 None:intergenic 50.0%
! GCTTCAATTGGAAGCACAGG+TGG - chr3_2:1218055-1218074 Msa0390400:intron 50.0%
TGCAGGAAGACCCATGACAA+TGG - chr3_2:1218491-1218510 Msa0390400:intron 50.0%
GCAGGAAGACCCATGACAAT+GGG - chr3_2:1218492-1218511 Msa0390400:intron 50.0%
!! AACCATCGCTCTGGAGCAAA+GGG + chr3_2:1218891-1218910 None:intergenic 50.0%
!! GCTGGTTTGGGCATATAGTG+AGG + chr3_2:1219213-1219232 None:intergenic 50.0%
CCAAGTGCCCAACTCTATGT+TGG + chr3_2:1219693-1219712 None:intergenic 50.0%
CCAACATAGAGTTGGGCACT+TGG - chr3_2:1219690-1219709 Msa0390400:intron 50.0%
GCTTTGCTCTGATGCAGTTG+CGG - chr3_2:1219744-1219763 Msa0390400:intron 50.0%
! AGCATTGCTGGCTGTCCATT+TGG - chr3_2:1219989-1220008 Msa0390400:intron 50.0%
TTCTCACATCATGTTCCCGG+TGG - chr3_2:1220025-1220044 Msa0390400:intron 50.0%
GCAACGGCATTATAACCACC+GGG + chr3_2:1220043-1220062 None:intergenic 50.0%
GGCAACGGCATTATAACCAC+CGG + chr3_2:1220044-1220063 None:intergenic 50.0%
! ACATTTCTAGGAGGTGCAGC+AGG + chr3_2:1220085-1220104 None:intergenic 50.0%
CCATTGTTAGAGACTGGTGG+TGG + chr3_2:1220115-1220134 None:intergenic 50.0%
CCACCACCAGTCTCTAACAA+TGG - chr3_2:1220112-1220131 Msa0390400:intron 50.0%
!!! GACAAGTGCCATTTTGCCCA+TGG - chr3_2:1220196-1220215 Msa0390400:intron 50.0%
!! GCCATTTTGCCCATGGTGAA+TGG - chr3_2:1220203-1220222 Msa0390400:intron 50.0%
CCCATTCACCATGGGCAAAA+TGG + chr3_2:1220207-1220226 None:intergenic 50.0%
ACCGAGTTCCCATTCACCAT+GGG + chr3_2:1220215-1220234 None:intergenic 50.0%
TACCGAGTTCCCATTCACCA+TGG + chr3_2:1220216-1220235 None:intergenic 50.0%
GGACGGTGATCATCAACTGA+TGG + chr3_2:1220250-1220269 None:intergenic 50.0%
GGCTGGAGCTATCATTGGAA+AGG - chr3_2:1220384-1220403 Msa0390400:intron 50.0%
GGAGCTATCATTGGAAAGGG+TGG - chr3_2:1220388-1220407 Msa0390400:intron 50.0%
GCCGCTGAATTGCGAAAGAT+AGG - chr3_2:1220712-1220731 Msa0390400:five_prime_UTR 50.0%
GAACGGAGGAAGATGGGGTT+TGG + chr3_2:1217063-1217082 None:intergenic 55.0%
ACAATGGATGCCCGCAAACG+AGG - chr3_2:1217204-1217223 Msa0390400:CDS 55.0%
CAATGGATGCCCGCAAACGA+GGG - chr3_2:1217205-1217224 Msa0390400:CDS 55.0%
ATCAACCCTCCCTCGTTTGC+GGG + chr3_2:1217217-1217236 None:intergenic 55.0%
CATCAACCCTCCCTCGTTTG+CGG + chr3_2:1217218-1217237 None:intergenic 55.0%
TACCTGGACACCCTAATCCG+AGG - chr3_2:1217706-1217725 Msa0390400:CDS 55.0%
CACGGACACTCCTCGGATTA+GGG + chr3_2:1217719-1217738 None:intergenic 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr3_2:1217725-1217744 Msa0390400:CDS 55.0%
!! ACCATCGCTCTGGAGCAAAG+GGG + chr3_2:1218890-1218909 None:intergenic 55.0%
!! CAACCATCGCTCTGGAGCAA+AGG + chr3_2:1218892-1218911 None:intergenic 55.0%
CAGTTGGAGAGAAGAGGCAG+AGG + chr3_2:1219181-1219200 None:intergenic 55.0%
! TGCTGGCTGTCCATTTGGTG+AGG - chr3_2:1219994-1220013 Msa0390400:intron 55.0%
! GCTGGCTGTCCATTTGGTGA+GGG - chr3_2:1219995-1220014 Msa0390400:intron 55.0%
GCCCATGGTGAATGGGAACT+CGG - chr3_2:1220211-1220230 Msa0390400:intron 55.0%
! TCGTATGCCTGGTCGAGTTG+AGG - chr3_2:1220291-1220310 Msa0390400:intron 55.0%
GTTGAGGCTCCTTCTGGTCT+AGG - chr3_2:1220307-1220326 Msa0390400:intron 55.0%
CTAGTACCGCCTAGACCAGA+AGG + chr3_2:1220319-1220338 None:intergenic 55.0%
! GGTCTAGGCGGTACTAGCTT+TGG - chr3_2:1220322-1220341 Msa0390400:intron 55.0%
! ACCTGGGGTGGATTTAGGTG+GGG + chr3_2:1220578-1220597 None:intergenic 55.0%
! CACCTGGGGTGGATTTAGGT+GGG + chr3_2:1220579-1220598 None:intergenic 55.0%
TGTTTCTTCCAGGTGCGGCT+GGG + chr3_2:1220618-1220637 None:intergenic 55.0%
ATGTTTCTTCCAGGTGCGGC+TGG + chr3_2:1220619-1220638 None:intergenic 55.0%
TCGCAATTCAGCGGCTCCAT+GGG + chr3_2:1220707-1220726 None:intergenic 55.0%
TTCGCAATTCAGCGGCTCCA+TGG + chr3_2:1220708-1220727 None:intergenic 55.0%
CACGGACACAGACCCTGACA+CGG - chr3_2:1217617-1217636 Msa0390400:CDS 60.0%
TTGGGGTCGTGTCGGATACC+TGG - chr3_2:1217690-1217709 Msa0390400:CDS 60.0%
! CTCCTCGGATTAGGGTGTCC+AGG + chr3_2:1217711-1217730 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr3_2:1217720-1217739 None:intergenic 60.0%
TCCCCTTTGCTCCAGAGCGA+TGG - chr3_2:1218886-1218905 Msa0390400:intron 60.0%
TCAGGACGCAACCATCGCTC+TGG + chr3_2:1218900-1218919 None:intergenic 60.0%
! GGGGCGGCAACATTTCTAGG+AGG + chr3_2:1220094-1220113 None:intergenic 60.0%
GGTGGGGCGGCAACATTTCT+AGG + chr3_2:1220097-1220116 None:intergenic 60.0%
!! GTTAGAGACTGGTGGTGGGG+CGG + chr3_2:1220110-1220129 None:intergenic 60.0%
GAAGGAGCCTCAACTCGACC+AGG + chr3_2:1220301-1220320 None:intergenic 60.0%
!! GGTCGAGTTGAGGCTCCTTC+TGG - chr3_2:1220301-1220320 Msa0390400:intron 60.0%
GAGGCTCCTTCTGGTCTAGG+CGG - chr3_2:1220310-1220329 Msa0390400:intron 60.0%
! GCACCTGGGGTGGATTTAGG+TGG + chr3_2:1220580-1220599 None:intergenic 60.0%
! GGAGCACCTGGGGTGGATTT+AGG + chr3_2:1220583-1220602 None:intergenic 60.0%
TGGATGCCCGCAAACGAGGG+AGG - chr3_2:1217208-1217227 Msa0390400:CDS 65.0%
GGATGCCCGCAAACGAGGGA+GGG - chr3_2:1217209-1217228 Msa0390400:CDS 65.0%
GCCCCACCTAAATCCACCCC+AGG - chr3_2:1220574-1220593 Msa0390400:intron 65.0%
!! ACCACCAGCAGGAGCACCTG+GGG + chr3_2:1220593-1220612 None:intergenic 65.0%
!! CACCACCAGCAGGAGCACCT+GGG + chr3_2:1220594-1220613 None:intergenic 65.0%
TCCACCCCAGGTGCTCCTGC+TGG - chr3_2:1220586-1220605 Msa0390400:intron 70.0%
!! ACCAGCAGGAGCACCTGGGG+TGG + chr3_2:1220590-1220609 None:intergenic 70.0%
ACCCCAGGTGCTCCTGCTGG+TGG - chr3_2:1220589-1220608 Msa0390400:intron 70.0%
!! CCACCACCAGCAGGAGCACC+TGG + chr3_2:1220595-1220614 None:intergenic 70.0%
CCAGGTGCTCCTGCTGGTGG+TGG - chr3_2:1220592-1220611 Msa0390400:intron 70.0%
! GCGGCTGGGCCACCACCAGC+AGG + chr3_2:1220604-1220623 None:intergenic 80.0%
!! GGTGGTGGCCCAGCCGCACC+TGG - chr3_2:1220607-1220626 Msa0390400:intron 80.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 1216918 1220982 1216918 ID=Msa0390400;Name=Msa0390400
chr3_2 mRNA 1216918 1220982 1216918 ID=Msa0390400-mRNA-1;Parent=Msa0390400;Name=Msa0390400-mRNA-1;_AED=0.07;_eAED=0.07;_QI=289|1|1|1|1|1|3|241|290
chr3_2 exon 1216918 1217909 1216918 ID=Msa0390400-mRNA-1:exon:385;Parent=Msa0390400-mRNA-1
chr3_2 exon 1219604 1219658 1219604 ID=Msa0390400-mRNA-1:exon:384;Parent=Msa0390400-mRNA-1
chr3_2 exon 1220627 1220982 1220627 ID=Msa0390400-mRNA-1:exon:383;Parent=Msa0390400-mRNA-1
chr3_2 five_prime_UTR 1220694 1220982 1220694 ID=Msa0390400-mRNA-1:five_prime_utr;Parent=Msa0390400-mRNA-1
chr3_2 CDS 1220627 1220693 1220627 ID=Msa0390400-mRNA-1:cds;Parent=Msa0390400-mRNA-1
chr3_2 CDS 1219604 1219658 1219604 ID=Msa0390400-mRNA-1:cds;Parent=Msa0390400-mRNA-1
chr3_2 CDS 1217159 1217909 1217159 ID=Msa0390400-mRNA-1:cds;Parent=Msa0390400-mRNA-1
chr3_2 three_prime_UTR 1216918 1217158 1216918 ID=Msa0390400-mRNA-1:three_prime_utr;Parent=Msa0390400-mRNA-1
Gene Sequence

>Msa0390400

ATGGATGCCCGCAAACGAGGGAGGGTTGATGCTGCTGTTAATGGCTCCGTCAAGAAAACCAAACAAGAAATGGACTCAACTGGTGTAGGAAGCAAAACGAAGCCTTGTACCAAGTTTTTCAGCATTGCTGGCTGTCCATTTGGTGAGGGTTGTCACTTCTCACATCATGTTCCCGGTGGTTATAATGCCGTTGCCCAGATGATGAATCTTAAACCTGCTGCACCTCCTAGAAATGTTGCCGCCCCACCACCAGTCTCTAACAATGGTTCTGCTGTTAAAAGCCGCATATGTAACAAGTTTAATTCTGCTGAAGGCTGCAAATTTGGTGACAAGTGCCATTTTGCCCATGGTGAATGGGAACTCGGTAAACCTTTTGCTCCATCAGTTGATGATCACCGTCCAATGGCACCTACAAATGTTGGTCGTATGCCTGGTCGAGTTGAGGCTCCTTCTGGTCTAGGCGGTACTAGCTTTGGTGCCAATTCCACTGCCAAGATCAGTGTAGAAGCTTCTTTGGCTGGAGCTATCATTGGAAAGGGTGGTGTGCACTCGAAGCAGATATGTCGCCAAACAGGAGTCAAATTTTCAATTCGAGACCATGAATCTGACCCAAATCTTAGAAACATTGAACTTGAGGGAACATTTGATCAAATTGCACAAGCAAGTAACATGGTAAAAGATTTGCTTTTGACTCTATCAGTGTCTGCCCCACCTAAATCCACCCCAGGTGCTCCTGCTGGTGGTGGCCCAGCCGCACCTGGAAGAAACATCAAGACCAAGCTGTGTGAGAATTTTGCTAAAGGATCCTGCACATTTGGAGAAAGATGTCACTTTGCCCATGGAGCCGCTGAATTGCGAAAGATAGGAGTCTAA

Protein sequence

>Msa0390400

MDARKRGRVDAAVNGSVKKTKQEMDSTGVGSKTKPCTKFFSIAGCPFGEGCHFSHHVPGGYNAVAQMMNLKPAAPPRNVAAPPPVSNNGSAVKSRICNKFNSAEGCKFGDKCHFAHGEWELGKPFAPSVDDHRPMAPTNVGRMPGRVEAPSGLGGTSFGANSTAKISVEASLAGAIIGKGGVHSKQICRQTGVKFSIRDHESDPNLRNIELEGTFDQIAQASNMVKDLLLTLSVSAPPKSTPGAPAGGGPAAPGRNIKTKLCENFAKGSCTFGERCHFAHGAAELRKIGV*