Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1036320 | XP_039684299.1 | 96.569 | 204 | 5 | 1 | 1 | 202 | 1 | 204 | 6.99e-142 | 404 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1036320 | sp|O24543|AX22E_VIGRR | 74.396 | 207 | 44 | 5 | 1 | 202 | 1 | 203 | 2.16e-98 | 286 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1036320 | A0A396HA94 | 96.569 | 204 | 5 | 1 | 1 | 202 | 1 | 204 | 3.34e-142 | 404 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1036320 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa1036320 | 0.817981 | 2.487341e-52 | -8.615850e-47 |
| Msa0212750 | Msa1036320 | -0.807786 | 4.264824e-50 | -8.615850e-47 |
| Msa1036320 | Msa1076600 | 0.922472 | 9.406493e-89 | -8.615850e-47 |
| Msa1036320 | Msa1133630 | 0.812590 | 3.927650e-51 | -8.615850e-47 |
| Msa1036320 | Msa1373880 | 0.812057 | 5.133320e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1036320 | MtrunA17_Chr7g0260621 | 96.569 | 204 | 5 | 1 | 1 | 202 | 1 | 204 | 6.43e-146 | 404 |
| Msa1036320 | MtrunA17_Chr1g0184801 | 71.939 | 196 | 48 | 5 | 11 | 202 | 12 | 204 | 1.91e-94 | 273 |
| Msa1036320 | MtrunA17_Chr1g0166011 | 61.458 | 192 | 65 | 4 | 11 | 201 | 1 | 184 | 4.05e-81 | 239 |
| Msa1036320 | MtrunA17_Chr1g0187961 | 57.068 | 191 | 57 | 5 | 11 | 199 | 11 | 178 | 2.70e-72 | 216 |
| Msa1036320 | MtrunA17_Chr6g0486121 | 46.725 | 229 | 83 | 7 | 11 | 200 | 15 | 243 | 6.89e-54 | 172 |
| Msa1036320 | MtrunA17_Chr1g0190711 | 44.726 | 237 | 77 | 7 | 10 | 200 | 14 | 242 | 4.11e-52 | 168 |
| Msa1036320 | MtrunA17_Chr1g0187921 | 44.796 | 221 | 88 | 7 | 11 | 200 | 8 | 225 | 1.25e-50 | 163 |
| Msa1036320 | MtrunA17_Chr8g0366881 | 40.221 | 271 | 81 | 8 | 11 | 200 | 67 | 337 | 3.92e-49 | 163 |
| Msa1036320 | MtrunA17_Chr1g0184791 | 42.259 | 239 | 88 | 7 | 2 | 200 | 6 | 234 | 7.24e-49 | 159 |
| Msa1036320 | MtrunA17_Chr8g0390281 | 42.424 | 264 | 83 | 10 | 6 | 200 | 19 | 282 | 7.99e-48 | 158 |
| Msa1036320 | MtrunA17_Chr2g0331411 | 48.555 | 173 | 65 | 3 | 52 | 200 | 143 | 315 | 9.94e-48 | 159 |
| Msa1036320 | MtrunA17_Chr5g0428141 | 39.350 | 277 | 86 | 6 | 6 | 200 | 60 | 336 | 1.36e-47 | 159 |
| Msa1036320 | MtrunA17_Chr5g0411501 | 38.351 | 279 | 88 | 10 | 6 | 200 | 46 | 324 | 6.79e-46 | 154 |
| Msa1036320 | MtrunA17_Chr7g0260641 | 40.086 | 232 | 94 | 7 | 11 | 200 | 11 | 239 | 8.79e-43 | 144 |
| Msa1036320 | MtrunA17_Chr4g0004181 | 45.946 | 185 | 72 | 4 | 16 | 200 | 11 | 167 | 2.38e-41 | 138 |
| Msa1036320 | MtrunA17_Chr2g0330951 | 32.917 | 240 | 97 | 7 | 17 | 195 | 18 | 254 | 3.71e-30 | 112 |
| Msa1036320 | MtrunA17_Chr1g0183251 | 35.593 | 177 | 56 | 4 | 81 | 200 | 82 | 257 | 5.01e-28 | 106 |
| Msa1036320 | MtrunA17_Chr8g0340731 | 33.152 | 184 | 80 | 4 | 51 | 195 | 81 | 260 | 1.01e-26 | 102 |
| Msa1036320 | MtrunA17_Chr2g0332141 | 47.959 | 98 | 38 | 2 | 108 | 194 | 8 | 103 | 8.91e-26 | 96.7 |
| Msa1036320 | MtrunA17_Chr4g0069561 | 39.167 | 120 | 69 | 2 | 76 | 194 | 66 | 182 | 1.59e-23 | 92.4 |
| Msa1036320 | MtrunA17_Chr7g0270851 | 42.500 | 120 | 62 | 3 | 74 | 192 | 42 | 155 | 2.13e-23 | 91.7 |
| Msa1036320 | MtrunA17_Chr1g0193861 | 42.478 | 113 | 54 | 3 | 85 | 192 | 64 | 170 | 3.74e-21 | 85.9 |
| Msa1036320 | MtrunA17_Chr3g0137601 | 31.061 | 132 | 72 | 3 | 81 | 199 | 88 | 213 | 1.09e-16 | 75.1 |
| Msa1036320 | MtrunA17_Chr4g0064131 | 31.206 | 141 | 75 | 4 | 62 | 192 | 77 | 205 | 1.45e-16 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1036320 | AT5G43700.1 | 59.067 | 193 | 59 | 3 | 10 | 201 | 10 | 183 | 1.37e-76 | 228 |
| Msa1036320 | AT1G04240.1 | 57.286 | 199 | 63 | 4 | 10 | 201 | 4 | 187 | 1.03e-73 | 221 |
| Msa1036320 | AT1G04240.2 | 56.650 | 203 | 66 | 4 | 6 | 201 | 100 | 287 | 3.57e-73 | 223 |
| Msa1036320 | AT3G23030.1 | 56.923 | 195 | 45 | 4 | 11 | 199 | 9 | 170 | 1.12e-65 | 200 |
| Msa1036320 | AT3G23030.2 | 56.923 | 195 | 45 | 4 | 11 | 199 | 96 | 257 | 5.11e-65 | 201 |
| Msa1036320 | AT4G14560.1 | 58.065 | 186 | 50 | 3 | 11 | 196 | 7 | 164 | 1.89e-61 | 189 |
| Msa1036320 | AT3G04730.1 | 45.455 | 231 | 80 | 7 | 10 | 200 | 1 | 225 | 4.29e-54 | 172 |
| Msa1036320 | AT1G04250.1 | 43.578 | 218 | 89 | 6 | 11 | 200 | 7 | 218 | 6.83e-52 | 167 |
| Msa1036320 | AT4G29080.1 | 43.580 | 257 | 78 | 9 | 11 | 200 | 38 | 294 | 1.86e-51 | 168 |
| Msa1036320 | AT4G14550.1 | 44.037 | 218 | 93 | 5 | 11 | 200 | 1 | 217 | 7.06e-51 | 164 |
| Msa1036320 | AT3G23050.1 | 42.982 | 228 | 92 | 6 | 10 | 200 | 5 | 231 | 9.78e-51 | 164 |
| Msa1036320 | AT4G14550.2 | 43.578 | 218 | 94 | 5 | 11 | 200 | 1 | 217 | 4.37e-50 | 162 |
| Msa1036320 | AT5G65670.1 | 52.055 | 146 | 47 | 4 | 78 | 200 | 180 | 325 | 9.48e-42 | 144 |
| Msa1036320 | AT5G65670.2 | 52.055 | 146 | 47 | 4 | 78 | 200 | 180 | 325 | 1.04e-41 | 144 |
| Msa1036320 | AT2G22670.3 | 36.641 | 262 | 94 | 9 | 11 | 200 | 47 | 308 | 3.08e-40 | 139 |
| Msa1036320 | AT2G22670.1 | 36.641 | 262 | 94 | 9 | 11 | 200 | 47 | 308 | 3.08e-40 | 139 |
| Msa1036320 | AT2G22670.4 | 36.641 | 262 | 94 | 9 | 11 | 200 | 64 | 325 | 4.61e-40 | 139 |
| Msa1036320 | AT1G52830.1 | 45.989 | 187 | 87 | 8 | 16 | 200 | 11 | 185 | 5.32e-40 | 135 |
| Msa1036320 | AT2G22670.5 | 35.985 | 264 | 97 | 9 | 11 | 202 | 47 | 310 | 9.12e-40 | 138 |
| Msa1036320 | AT2G22670.2 | 35.985 | 264 | 97 | 9 | 11 | 202 | 47 | 310 | 9.12e-40 | 138 |
| Msa1036320 | AT3G15540.1 | 42.781 | 187 | 97 | 4 | 16 | 200 | 11 | 189 | 3.89e-39 | 133 |
| Msa1036320 | AT1G15580.1 | 43.478 | 184 | 70 | 5 | 16 | 198 | 13 | 163 | 3.47e-38 | 130 |
| Msa1036320 | AT4G14550.3 | 40.816 | 196 | 87 | 5 | 11 | 178 | 1 | 195 | 3.82e-38 | 130 |
| Msa1036320 | AT3G23050.2 | 39.806 | 206 | 86 | 6 | 10 | 178 | 5 | 209 | 4.58e-38 | 131 |
| Msa1036320 | AT3G16500.2 | 36.364 | 231 | 97 | 9 | 14 | 201 | 36 | 259 | 4.60e-33 | 119 |
| Msa1036320 | AT3G16500.1 | 36.607 | 224 | 93 | 8 | 14 | 195 | 36 | 252 | 1.57e-32 | 118 |
| Msa1036320 | AT4G28640.1 | 42.331 | 163 | 59 | 5 | 73 | 200 | 80 | 242 | 3.48e-30 | 111 |
| Msa1036320 | AT4G28640.3 | 42.236 | 161 | 58 | 5 | 73 | 198 | 80 | 240 | 4.91e-30 | 111 |
| Msa1036320 | AT2G33310.3 | 39.891 | 183 | 67 | 5 | 56 | 201 | 56 | 232 | 2.21e-29 | 109 |
| Msa1036320 | AT2G33310.1 | 39.891 | 183 | 67 | 5 | 56 | 201 | 56 | 232 | 2.21e-29 | 109 |
| Msa1036320 | AT2G33310.2 | 38.122 | 181 | 75 | 4 | 58 | 201 | 53 | 233 | 3.32e-29 | 109 |
| Msa1036320 | AT4G28640.2 | 42.236 | 161 | 58 | 5 | 73 | 198 | 80 | 240 | 5.63e-29 | 110 |
| Msa1036320 | AT1G04550.2 | 39.106 | 179 | 72 | 4 | 58 | 200 | 47 | 224 | 2.43e-28 | 106 |
| Msa1036320 | AT1G51950.1 | 32.287 | 223 | 98 | 7 | 14 | 195 | 40 | 250 | 5.74e-28 | 106 |
| Msa1036320 | AT3G17600.1 | 41.593 | 113 | 55 | 3 | 85 | 192 | 48 | 154 | 3.44e-25 | 96.3 |
| Msa1036320 | AT5G25890.1 | 34.641 | 153 | 81 | 4 | 56 | 200 | 27 | 168 | 3.05e-24 | 94.4 |
| Msa1036320 | AT3G23050.3 | 37.805 | 164 | 76 | 5 | 10 | 148 | 5 | 167 | 4.74e-24 | 93.6 |
| Msa1036320 | AT4G14550.4 | 39.041 | 146 | 73 | 3 | 11 | 141 | 1 | 145 | 3.46e-23 | 92.0 |
| Msa1036320 | AT2G46990.1 | 46.591 | 88 | 47 | 0 | 107 | 194 | 85 | 172 | 4.49e-22 | 89.0 |
| Msa1036320 | AT3G62100.1 | 45.263 | 95 | 52 | 0 | 98 | 192 | 74 | 168 | 6.88e-22 | 88.2 |
| Msa1036320 | AT1G04100.1 | 35.882 | 170 | 61 | 5 | 78 | 199 | 90 | 259 | 1.17e-21 | 89.7 |
| Msa1036320 | AT2G46990.2 | 47.222 | 72 | 38 | 0 | 107 | 178 | 85 | 156 | 3.40e-16 | 72.8 |
| Msa1036320 | AT3G62100.2 | 43.210 | 81 | 46 | 0 | 98 | 178 | 74 | 154 | 1.53e-15 | 71.2 |
| Msa1036320 | AT4G32280.2 | 38.542 | 96 | 54 | 2 | 107 | 202 | 118 | 208 | 4.49e-14 | 68.6 |
| Msa1036320 | AT1G80390.1 | 35.433 | 127 | 59 | 4 | 16 | 142 | 19 | 122 | 8.22e-14 | 65.9 |
| Msa1036320 | AT4G32280.1 | 38.542 | 96 | 54 | 2 | 107 | 202 | 160 | 250 | 1.11e-13 | 68.2 |
| Msa1036320 | AT2G46530.2 | 36.792 | 106 | 61 | 2 | 94 | 199 | 391 | 490 | 2.64e-13 | 68.2 |
| Msa1036320 | AT2G46530.1 | 36.792 | 106 | 61 | 2 | 94 | 199 | 478 | 577 | 3.14e-13 | 68.2 |
| Msa1036320 | AT2G46530.3 | 36.792 | 106 | 61 | 2 | 94 | 199 | 499 | 598 | 4.67e-13 | 67.4 |
Find 63 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTATTTATTTATAATTT+TGG | 0.106018 | 7_1:-72668098 | Msa1036320:three_prime_UTR |
| CTCAGAACTTCTTAAGGTTT+TGG | 0.224721 | 7_1:-72668692 | Msa1036320:CDS |
| CTTTATTTATATAGAGATTA+AGG | 0.258286 | 7_1:-72669241 | Msa1036320:five_prime_UTR |
| ATAGAGTTTGGATTTGGATT+TGG | 0.302329 | 7_1:-72669268 | Msa1036320:five_prime_UTR |
| TTCTTCCTAAAAGATCTAAT+TGG | 0.303224 | 7_1:+72668823 | None:intergenic |
| AATTAATTATTATCAAGAAA+TGG | 0.308561 | 7_1:-72669212 | Msa1036320:exon |
| CAGAATTTATCAATAGAGTT+TGG | 0.318162 | 7_1:-72669280 | Msa1036320:five_prime_UTR |
| TTATCAATAGAGTTTGGATT+TGG | 0.319954 | 7_1:-72669274 | Msa1036320:five_prime_UTR |
| TTTGAGAGAAAGAAAATATA+AGG | 0.321226 | 7_1:-72668257 | Msa1036320:three_prime_UTR |
| AGAATTGATGATTGAAGAAA+TGG | 0.327625 | 7_1:+72669336 | None:intergenic |
| GAACTACTCAGAACTTCTTA+AGG | 0.361311 | 7_1:-72668698 | Msa1036320:CDS |
| ATTAATTATTATCAAGAAAT+GGG | 0.388582 | 7_1:-72669211 | Msa1036320:exon |
| ATTAACAAAAGCACAAAATC+AGG | 0.391339 | 7_1:-72668367 | Msa1036320:three_prime_UTR |
| AAGGCTTGAATTAAGAAATC+AGG | 0.392758 | 7_1:+72668288 | None:intergenic |
| TTATGTATGACTTACTTTGT+AGG | 0.395482 | 7_1:+72668965 | None:intergenic |
| AATATGTTCAAGTGTACATT+TGG | 0.401164 | 7_1:-72668667 | Msa1036320:CDS |
| GTCATGATCACTTGTGGTTG+TGG | 0.404340 | 7_1:+72669003 | None:intergenic |
| ATTTGCAGGGTACAAGTAGT+TGG | 0.404443 | 7_1:-72668853 | Msa1036320:intron |
| TTTCTCTCAAATATCTAGAA+AGG | 0.408067 | 7_1:+72668269 | None:intergenic |
| ATCACCAGAGCTCTTAGAAA+TGG | 0.429190 | 7_1:+72669033 | None:intergenic |
| GAATTAAGATTGGGATTGCC+TGG | 0.450216 | 7_1:-72669145 | Msa1036320:CDS |
| GTGAAAGGATCAGAAGCAAA+AGG | 0.452877 | 7_1:-72668415 | Msa1036320:CDS |
| GATTGTTCATCATCACTTCC+AGG | 0.453387 | 7_1:+72669127 | None:intergenic |
| AATTTAAGAACTTACTTCCA+TGG | 0.462324 | 7_1:+72668553 | None:intergenic |
| CAAGGACACAGAATTAAGAT+TGG | 0.462867 | 7_1:-72669155 | Msa1036320:CDS |
| TTGTAGGTTGGACAGTGTCT+TGG | 0.481019 | 7_1:+72668981 | None:intergenic |
| GTATGACTTACTTTGTAGGT+TGG | 0.482291 | 7_1:+72668969 | None:intergenic |
| CAACAAAATAAAGTGGAAGA+TGG | 0.489467 | 7_1:-72668793 | Msa1036320:CDS |
| GTTCTAAAGAGGTGGCTTTG+AGG | 0.496164 | 7_1:-72668311 | Msa1036320:three_prime_UTR |
| TGAACATGCTCCTACTTATG+AGG | 0.497905 | 7_1:-72668611 | Msa1036320:CDS |
| TTCCTAAAAGATCTAATTGG+TGG | 0.498613 | 7_1:+72668826 | None:intergenic |
| GAATGAGATGAGAAGAAGCT+AGG | 0.499678 | 7_1:+72669358 | None:intergenic |
| AAGGACACAGAATTAAGATT+GGG | 0.515527 | 7_1:-72669154 | Msa1036320:CDS |
| TTTGCAGGGTACAAGTAGTT+GGG | 0.516885 | 7_1:-72668852 | Msa1036320:intron |
| ATGAGGATAAAGATGGTGAT+TGG | 0.518002 | 7_1:-72668594 | Msa1036320:CDS |
| GAGTCCATTTCTAAGAGCTC+TGG | 0.522835 | 7_1:-72669037 | Msa1036320:CDS |
| GTGAATATTCAGAAAGAGAA+GGG | 0.526820 | 7_1:-72668645 | Msa1036320:CDS |
| AATAAAGTGGAAGATGGAAG+TGG | 0.532994 | 7_1:-72668787 | Msa1036320:CDS |
| GATGGTGATTGGATGCTAGT+TGG | 0.542154 | 7_1:-72668583 | Msa1036320:CDS |
| TAGTTTACAACAAAATAAAG+TGG | 0.543416 | 7_1:-72668800 | Msa1036320:CDS |
| GGTGAATATTCAGAAAGAGA+AGG | 0.544646 | 7_1:-72668646 | Msa1036320:CDS |
| CCATCTTTATCCTCATAAGT+AGG | 0.549431 | 7_1:+72668601 | None:intergenic |
| CCTACTTATGAGGATAAAGA+TGG | 0.550050 | 7_1:-72668601 | Msa1036320:CDS |
| TGAAAGGATCAGAAGCAAAA+GGG | 0.552833 | 7_1:-72668414 | Msa1036320:CDS |
| TATGTGAAAGTGAGCATGGC+TGG | 0.554233 | 7_1:-72668760 | Msa1036320:CDS |
| ATTAAAATATATACACAACA+TGG | 0.565005 | 7_1:-72668150 | Msa1036320:three_prime_UTR |
| GAGCAGAGAGAGTTCTAAAG+AGG | 0.574211 | 7_1:-72668322 | Msa1036320:three_prime_UTR |
| ATGTACAATCAAAATAGCAT+TGG | 0.575074 | 7_1:+72668224 | None:intergenic |
| GTCTTGGTCATGATCACTTG+TGG | 0.583842 | 7_1:+72668997 | None:intergenic |
| AGGATCAGAAGCAAAAGGGT+TGG | 0.596397 | 7_1:-72668410 | Msa1036320:CDS |
| TGTTTATATCCTCATGCAAG+AGG | 0.598442 | 7_1:-72668447 | Msa1036320:CDS |
| TCAGAAAGAGAAGGGTACAA+TGG | 0.598816 | 7_1:-72668637 | Msa1036320:CDS |
| CAGAGAGAGTTCTAAAGAGG+TGG | 0.600585 | 7_1:-72668319 | Msa1036320:three_prime_UTR |
| TGGCTGGTGCACCTTACTTG+AGG | 0.603488 | 7_1:-72668744 | Msa1036320:CDS |
| TTAAAATATATACACAACAT+GGG | 0.610245 | 7_1:-72668149 | Msa1036320:three_prime_UTR |
| TGCTAGTTGGAGATGTTCCA+TGG | 0.610466 | 7_1:-72668570 | Msa1036320:CDS |
| TATCTTCAGCCTCTTGCATG+AGG | 0.625803 | 7_1:+72668438 | None:intergenic |
| GCAGGGTACAAGTAGTTGGG+TGG | 0.630903 | 7_1:-72668849 | Msa1036320:intron |
| AAGAGGCTGAAGATAGTGAA+AGG | 0.636692 | 7_1:-72668430 | Msa1036320:CDS |
| GATGATGAACAATCATGCAA+TGG | 0.654238 | 7_1:-72669118 | Msa1036320:CDS |
| GATGAACAATCATGCAATGG+TGG | 0.661335 | 7_1:-72669115 | Msa1036320:CDS |
| AGAGTTGATTATTAATCACA+AGG | 0.665606 | 7_1:-72669173 | Msa1036320:CDS |
| AATGTATGTGAAAGTGAGCA+TGG | 0.667106 | 7_1:-72668764 | Msa1036320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTATTTATAATTT+TGG | - | chr7_1:72669310-72669329 | Msa1036320:five_prime_UTR | 0.0% |
| !!! | AATTTATTTATTTATAATTT+TGG | - | chr7_1:72669310-72669329 | Msa1036320:five_prime_UTR | 0.0% |
| !! | AATTAATTATTATCAAGAAA+TGG | - | chr7_1:72668196-72668215 | Msa1036320:three_prime_UTR | 10.0% |
| !! | ATTAATTATTATCAAGAAAT+GGG | - | chr7_1:72668197-72668216 | Msa1036320:three_prime_UTR | 10.0% |
| !! | AATTAATTATTATCAAGAAA+TGG | - | chr7_1:72668196-72668215 | Msa1036320:three_prime_UTR | 10.0% |
| !! | ATTAATTATTATCAAGAAAT+GGG | - | chr7_1:72668197-72668216 | Msa1036320:three_prime_UTR | 10.0% |
| !!! | CTTTATTTATATAGAGATTA+AGG | - | chr7_1:72668167-72668186 | Msa1036320:three_prime_UTR | 15.0% |
| !! | CAACATATATATGAATATAA+TGG | - | chr7_1:72668467-72668486 | Msa1036320:intron | 15.0% |
| !!! | ATAAACTTTTGTTGATTTTT+GGG | - | chr7_1:72668501-72668520 | Msa1036320:intron | 15.0% |
| !!! | TTTAATTATTTTTGGTTTCA+TGG | - | chr7_1:72668896-72668915 | Msa1036320:intron | 15.0% |
| !! | ATTAAAATATATACACAACA+TGG | - | chr7_1:72669258-72669277 | Msa1036320:five_prime_UTR | 15.0% |
| !! | TTAAAATATATACACAACAT+GGG | - | chr7_1:72669259-72669278 | Msa1036320:five_prime_UTR | 15.0% |
| !!! | CTTTATTTATATAGAGATTA+AGG | - | chr7_1:72668167-72668186 | Msa1036320:three_prime_UTR | 15.0% |
| !! | CAACATATATATGAATATAA+TGG | - | chr7_1:72668467-72668486 | Msa1036320:intron | 15.0% |
| !!! | ATAAACTTTTGTTGATTTTT+GGG | - | chr7_1:72668501-72668520 | Msa1036320:intron | 15.0% |
| !!! | TTTAATTATTTTTGGTTTCA+TGG | - | chr7_1:72668896-72668915 | Msa1036320:intron | 15.0% |
| !! | ATTAAAATATATACACAACA+TGG | - | chr7_1:72669258-72669277 | Msa1036320:five_prime_UTR | 15.0% |
| !! | TTAAAATATATACACAACAT+GGG | - | chr7_1:72669259-72669278 | Msa1036320:five_prime_UTR | 15.0% |
| !!! | CATAAACTTTTGTTGATTTT+TGG | - | chr7_1:72668500-72668519 | Msa1036320:intron | 20.0% |
| !! | TTAAATTGATGAATATTTGC+AGG | - | chr7_1:72668541-72668560 | Msa1036320:intron | 20.0% |
| !! | TAAATTGATGAATATTTGCA+GGG | - | chr7_1:72668542-72668561 | Msa1036320:intron | 20.0% |
| !! | TAGTTTACAACAAAATAAAG+TGG | - | chr7_1:72668608-72668627 | Msa1036320:CDS | 20.0% |
| !! | TTTGAGAGAAAGAAAATATA+AGG | - | chr7_1:72669151-72669170 | Msa1036320:CDS | 20.0% |
| !!! | CATAAACTTTTGTTGATTTT+TGG | - | chr7_1:72668500-72668519 | Msa1036320:intron | 20.0% |
| !! | TTAAATTGATGAATATTTGC+AGG | - | chr7_1:72668541-72668560 | Msa1036320:intron | 20.0% |
| !! | TAAATTGATGAATATTTGCA+GGG | - | chr7_1:72668542-72668561 | Msa1036320:intron | 20.0% |
| !! | TAGTTTACAACAAAATAAAG+TGG | - | chr7_1:72668608-72668627 | Msa1036320:CDS | 20.0% |
| !! | TTTGAGAGAAAGAAAATATA+AGG | - | chr7_1:72669151-72669170 | Msa1036320:CDS | 20.0% |
| !! | AGAATTGATGATTGAAGAAA+TGG | + | chr7_1:72668075-72668094 | None:intergenic | 25.0% |
| ! | GAAAAATCTGATTAAGTCTT+TGG | + | chr7_1:72668109-72668128 | None:intergenic | 25.0% |
| ! | CAGAATTTATCAATAGAGTT+TGG | - | chr7_1:72668128-72668147 | Msa1036320:three_prime_UTR | 25.0% |
| ! | TTATCAATAGAGTTTGGATT+TGG | - | chr7_1:72668134-72668153 | Msa1036320:three_prime_UTR | 25.0% |
| !! | AGAGTTGATTATTAATCACA+AGG | - | chr7_1:72668235-72668254 | Msa1036320:three_prime_UTR | 25.0% |
| ! | TTATGTATGACTTACTTTGT+AGG | + | chr7_1:72668446-72668465 | None:intergenic | 25.0% |
| ! | TTCTTCCTAAAAGATCTAAT+TGG | + | chr7_1:72668588-72668607 | None:intergenic | 25.0% |
| ! | AATATGTTCAAGTGTACATT+TGG | - | chr7_1:72668741-72668760 | Msa1036320:CDS | 25.0% |
| ! | AATTTAAGAACTTACTTCCA+TGG | + | chr7_1:72668858-72668877 | None:intergenic | 25.0% |
| !! | ATTAACAAAAGCACAAAATC+AGG | - | chr7_1:72669041-72669060 | Msa1036320:CDS | 25.0% |
| ! | TTTCTCTCAAATATCTAGAA+AGG | + | chr7_1:72669142-72669161 | None:intergenic | 25.0% |
| ! | ATGTACAATCAAAATAGCAT+TGG | + | chr7_1:72669187-72669206 | None:intergenic | 25.0% |
| !! | AGAATTGATGATTGAAGAAA+TGG | + | chr7_1:72668075-72668094 | None:intergenic | 25.0% |
| ! | GAAAAATCTGATTAAGTCTT+TGG | + | chr7_1:72668109-72668128 | None:intergenic | 25.0% |
| ! | CAGAATTTATCAATAGAGTT+TGG | - | chr7_1:72668128-72668147 | Msa1036320:three_prime_UTR | 25.0% |
| ! | TTATCAATAGAGTTTGGATT+TGG | - | chr7_1:72668134-72668153 | Msa1036320:three_prime_UTR | 25.0% |
| !! | AGAGTTGATTATTAATCACA+AGG | - | chr7_1:72668235-72668254 | Msa1036320:three_prime_UTR | 25.0% |
| ! | TTATGTATGACTTACTTTGT+AGG | + | chr7_1:72668446-72668465 | None:intergenic | 25.0% |
| ! | TTCTTCCTAAAAGATCTAAT+TGG | + | chr7_1:72668588-72668607 | None:intergenic | 25.0% |
| ! | AATATGTTCAAGTGTACATT+TGG | - | chr7_1:72668741-72668760 | Msa1036320:CDS | 25.0% |
| ! | AATTTAAGAACTTACTTCCA+TGG | + | chr7_1:72668858-72668877 | None:intergenic | 25.0% |
| !! | ATTAACAAAAGCACAAAATC+AGG | - | chr7_1:72669041-72669060 | Msa1036320:CDS | 25.0% |
| ! | TTTCTCTCAAATATCTAGAA+AGG | + | chr7_1:72669142-72669161 | None:intergenic | 25.0% |
| ! | ATGTACAATCAAAATAGCAT+TGG | + | chr7_1:72669187-72669206 | None:intergenic | 25.0% |
| ATAGAGTTTGGATTTGGATT+TGG | - | chr7_1:72668140-72668159 | Msa1036320:three_prime_UTR | 30.0% | |
| AAGGACACAGAATTAAGATT+GGG | - | chr7_1:72668254-72668273 | Msa1036320:three_prime_UTR | 30.0% | |
| TTCCTAAAAGATCTAATTGG+TGG | + | chr7_1:72668585-72668604 | None:intergenic | 30.0% | |
| CAACAAAATAAAGTGGAAGA+TGG | - | chr7_1:72668615-72668634 | Msa1036320:CDS | 30.0% | |
| ! | AGATCTATTTTCCTCAAGTA+AGG | + | chr7_1:72668678-72668697 | None:intergenic | 30.0% |
| GTGAATATTCAGAAAGAGAA+GGG | - | chr7_1:72668763-72668782 | Msa1036320:CDS | 30.0% | |
| ! | GTGCTTTTGTTAATTTTGTG+AGG | + | chr7_1:72669035-72669054 | None:intergenic | 30.0% |
| AAGGCTTGAATTAAGAAATC+AGG | + | chr7_1:72669123-72669142 | None:intergenic | 30.0% | |
| ATAGAGTTTGGATTTGGATT+TGG | - | chr7_1:72668140-72668159 | Msa1036320:three_prime_UTR | 30.0% | |
| AAGGACACAGAATTAAGATT+GGG | - | chr7_1:72668254-72668273 | Msa1036320:three_prime_UTR | 30.0% | |
| TTCCTAAAAGATCTAATTGG+TGG | + | chr7_1:72668585-72668604 | None:intergenic | 30.0% | |
| CAACAAAATAAAGTGGAAGA+TGG | - | chr7_1:72668615-72668634 | Msa1036320:CDS | 30.0% | |
| ! | AGATCTATTTTCCTCAAGTA+AGG | + | chr7_1:72668678-72668697 | None:intergenic | 30.0% |
| GTGAATATTCAGAAAGAGAA+GGG | - | chr7_1:72668763-72668782 | Msa1036320:CDS | 30.0% | |
| ! | GTGCTTTTGTTAATTTTGTG+AGG | + | chr7_1:72669035-72669054 | None:intergenic | 30.0% |
| AAGGCTTGAATTAAGAAATC+AGG | + | chr7_1:72669123-72669142 | None:intergenic | 30.0% | |
| CAAGGACACAGAATTAAGAT+TGG | - | chr7_1:72668253-72668272 | Msa1036320:three_prime_UTR | 35.0% | |
| GATGATGAACAATCATGCAA+TGG | - | chr7_1:72668290-72668309 | Msa1036320:three_prime_UTR | 35.0% | |
| GTATGACTTACTTTGTAGGT+TGG | + | chr7_1:72668442-72668461 | None:intergenic | 35.0% | |
| AATAAAGTGGAAGATGGAAG+TGG | - | chr7_1:72668621-72668640 | Msa1036320:CDS | 35.0% | |
| AATGTATGTGAAAGTGAGCA+TGG | - | chr7_1:72668644-72668663 | Msa1036320:CDS | 35.0% | |
| GAACTACTCAGAACTTCTTA+AGG | - | chr7_1:72668710-72668729 | Msa1036320:CDS | 35.0% | |
| ! | CTCAGAACTTCTTAAGGTTT+TGG | - | chr7_1:72668716-72668735 | Msa1036320:CDS | 35.0% |
| GGTGAATATTCAGAAAGAGA+AGG | - | chr7_1:72668762-72668781 | Msa1036320:CDS | 35.0% | |
| CCATCTTTATCCTCATAAGT+AGG | + | chr7_1:72668810-72668829 | None:intergenic | 35.0% | |
| CCTACTTATGAGGATAAAGA+TGG | - | chr7_1:72668807-72668826 | Msa1036320:CDS | 35.0% | |
| ATGAGGATAAAGATGGTGAT+TGG | - | chr7_1:72668814-72668833 | Msa1036320:CDS | 35.0% | |
| TGTTTATATCCTCATGCAAG+AGG | - | chr7_1:72668961-72668980 | Msa1036320:intron | 35.0% | |
| TGAAAGGATCAGAAGCAAAA+GGG | - | chr7_1:72668994-72669013 | Msa1036320:CDS | 35.0% | |
| CAAGGACACAGAATTAAGAT+TGG | - | chr7_1:72668253-72668272 | Msa1036320:three_prime_UTR | 35.0% | |
| GATGATGAACAATCATGCAA+TGG | - | chr7_1:72668290-72668309 | Msa1036320:three_prime_UTR | 35.0% | |
| GTATGACTTACTTTGTAGGT+TGG | + | chr7_1:72668442-72668461 | None:intergenic | 35.0% | |
| AATAAAGTGGAAGATGGAAG+TGG | - | chr7_1:72668621-72668640 | Msa1036320:CDS | 35.0% | |
| AATGTATGTGAAAGTGAGCA+TGG | - | chr7_1:72668644-72668663 | Msa1036320:CDS | 35.0% | |
| GAACTACTCAGAACTTCTTA+AGG | - | chr7_1:72668710-72668729 | Msa1036320:CDS | 35.0% | |
| ! | CTCAGAACTTCTTAAGGTTT+TGG | - | chr7_1:72668716-72668735 | Msa1036320:CDS | 35.0% |
| GGTGAATATTCAGAAAGAGA+AGG | - | chr7_1:72668762-72668781 | Msa1036320:CDS | 35.0% | |
| CCATCTTTATCCTCATAAGT+AGG | + | chr7_1:72668810-72668829 | None:intergenic | 35.0% | |
| CCTACTTATGAGGATAAAGA+TGG | - | chr7_1:72668807-72668826 | Msa1036320:CDS | 35.0% | |
| ATGAGGATAAAGATGGTGAT+TGG | - | chr7_1:72668814-72668833 | Msa1036320:CDS | 35.0% | |
| TGTTTATATCCTCATGCAAG+AGG | - | chr7_1:72668961-72668980 | Msa1036320:intron | 35.0% | |
| TGAAAGGATCAGAAGCAAAA+GGG | - | chr7_1:72668994-72669013 | Msa1036320:CDS | 35.0% | |
| GAATGAGATGAGAAGAAGCT+AGG | + | chr7_1:72668053-72668072 | None:intergenic | 40.0% | |
| GAATTAAGATTGGGATTGCC+TGG | - | chr7_1:72668263-72668282 | Msa1036320:three_prime_UTR | 40.0% | |
| GATTGTTCATCATCACTTCC+AGG | + | chr7_1:72668284-72668303 | None:intergenic | 40.0% | |
| GATGAACAATCATGCAATGG+TGG | - | chr7_1:72668293-72668312 | Msa1036320:three_prime_UTR | 40.0% | |
| ATCACCAGAGCTCTTAGAAA+TGG | + | chr7_1:72668378-72668397 | None:intergenic | 40.0% | |
| ATTTGCAGGGTACAAGTAGT+TGG | - | chr7_1:72668555-72668574 | Msa1036320:intron | 40.0% | |
| TTTGCAGGGTACAAGTAGTT+GGG | - | chr7_1:72668556-72668575 | Msa1036320:intron | 40.0% | |
| ! | GGCCACCAATTAGATCTTTT+AGG | - | chr7_1:72668580-72668599 | Msa1036320:CDS | 40.0% |
| ! | TCAGAAAGAGAAGGGTACAA+TGG | - | chr7_1:72668771-72668790 | Msa1036320:CDS | 40.0% |
| TGAACATGCTCCTACTTATG+AGG | - | chr7_1:72668797-72668816 | Msa1036320:CDS | 40.0% | |
| AAGAGGCTGAAGATAGTGAA+AGG | - | chr7_1:72668978-72668997 | Msa1036320:intron | 40.0% | |
| GTGAAAGGATCAGAAGCAAA+AGG | - | chr7_1:72668993-72669012 | Msa1036320:CDS | 40.0% | |
| GAATGAGATGAGAAGAAGCT+AGG | + | chr7_1:72668053-72668072 | None:intergenic | 40.0% | |
| GAATTAAGATTGGGATTGCC+TGG | - | chr7_1:72668263-72668282 | Msa1036320:three_prime_UTR | 40.0% | |
| GATTGTTCATCATCACTTCC+AGG | + | chr7_1:72668284-72668303 | None:intergenic | 40.0% | |
| GATGAACAATCATGCAATGG+TGG | - | chr7_1:72668293-72668312 | Msa1036320:three_prime_UTR | 40.0% | |
| ATCACCAGAGCTCTTAGAAA+TGG | + | chr7_1:72668378-72668397 | None:intergenic | 40.0% | |
| ATTTGCAGGGTACAAGTAGT+TGG | - | chr7_1:72668555-72668574 | Msa1036320:intron | 40.0% | |
| TTTGCAGGGTACAAGTAGTT+GGG | - | chr7_1:72668556-72668575 | Msa1036320:intron | 40.0% | |
| ! | GGCCACCAATTAGATCTTTT+AGG | - | chr7_1:72668580-72668599 | Msa1036320:CDS | 40.0% |
| ! | TCAGAAAGAGAAGGGTACAA+TGG | - | chr7_1:72668771-72668790 | Msa1036320:CDS | 40.0% |
| TGAACATGCTCCTACTTATG+AGG | - | chr7_1:72668797-72668816 | Msa1036320:CDS | 40.0% | |
| AAGAGGCTGAAGATAGTGAA+AGG | - | chr7_1:72668978-72668997 | Msa1036320:intron | 40.0% | |
| GTGAAAGGATCAGAAGCAAA+AGG | - | chr7_1:72668993-72669012 | Msa1036320:CDS | 40.0% | |
| ! | GAGTCCATTTCTAAGAGCTC+TGG | - | chr7_1:72668371-72668390 | Msa1036320:three_prime_UTR | 45.0% |
| GTCATGATCACTTGTGGTTG+TGG | + | chr7_1:72668408-72668427 | None:intergenic | 45.0% | |
| GTCTTGGTCATGATCACTTG+TGG | + | chr7_1:72668414-72668433 | None:intergenic | 45.0% | |
| ! | TTGTAGGTTGGACAGTGTCT+TGG | + | chr7_1:72668430-72668449 | None:intergenic | 45.0% |
| TATGTGAAAGTGAGCATGGC+TGG | - | chr7_1:72668648-72668667 | Msa1036320:CDS | 45.0% | |
| GATGGTGATTGGATGCTAGT+TGG | - | chr7_1:72668825-72668844 | Msa1036320:CDS | 45.0% | |
| TGCTAGTTGGAGATGTTCCA+TGG | - | chr7_1:72668838-72668857 | Msa1036320:CDS | 45.0% | |
| TATCTTCAGCCTCTTGCATG+AGG | + | chr7_1:72668973-72668992 | None:intergenic | 45.0% | |
| AGGATCAGAAGCAAAAGGGT+TGG | - | chr7_1:72668998-72669017 | Msa1036320:CDS | 45.0% | |
| !! | GAGCAGAGAGAGTTCTAAAG+AGG | - | chr7_1:72669086-72669105 | Msa1036320:CDS | 45.0% |
| !! | CAGAGAGAGTTCTAAAGAGG+TGG | - | chr7_1:72669089-72669108 | Msa1036320:CDS | 45.0% |
| !! | GTTCTAAAGAGGTGGCTTTG+AGG | - | chr7_1:72669097-72669116 | Msa1036320:CDS | 45.0% |
| ! | GAGTCCATTTCTAAGAGCTC+TGG | - | chr7_1:72668371-72668390 | Msa1036320:three_prime_UTR | 45.0% |
| GTCATGATCACTTGTGGTTG+TGG | + | chr7_1:72668408-72668427 | None:intergenic | 45.0% | |
| GTCTTGGTCATGATCACTTG+TGG | + | chr7_1:72668414-72668433 | None:intergenic | 45.0% | |
| ! | TTGTAGGTTGGACAGTGTCT+TGG | + | chr7_1:72668430-72668449 | None:intergenic | 45.0% |
| TATGTGAAAGTGAGCATGGC+TGG | - | chr7_1:72668648-72668667 | Msa1036320:CDS | 45.0% | |
| GATGGTGATTGGATGCTAGT+TGG | - | chr7_1:72668825-72668844 | Msa1036320:CDS | 45.0% | |
| TGCTAGTTGGAGATGTTCCA+TGG | - | chr7_1:72668838-72668857 | Msa1036320:CDS | 45.0% | |
| TATCTTCAGCCTCTTGCATG+AGG | + | chr7_1:72668973-72668992 | None:intergenic | 45.0% | |
| AGGATCAGAAGCAAAAGGGT+TGG | - | chr7_1:72668998-72669017 | Msa1036320:CDS | 45.0% | |
| !! | GAGCAGAGAGAGTTCTAAAG+AGG | - | chr7_1:72669086-72669105 | Msa1036320:CDS | 45.0% |
| !! | CAGAGAGAGTTCTAAAGAGG+TGG | - | chr7_1:72669089-72669108 | Msa1036320:CDS | 45.0% |
| !! | GTTCTAAAGAGGTGGCTTTG+AGG | - | chr7_1:72669097-72669116 | Msa1036320:CDS | 45.0% |
| !!! | CTTTTAATTTTAATTATTTT+TGG | - | chr7_1:72668888-72668907 | Msa1036320:intron | 5.0% |
| !!! | CTTTTAATTTTAATTATTTT+TGG | - | chr7_1:72668888-72668907 | Msa1036320:intron | 5.0% |
| GCAGGGTACAAGTAGTTGGG+TGG | - | chr7_1:72668559-72668578 | Msa1036320:intron | 55.0% | |
| TGGCTGGTGCACCTTACTTG+AGG | - | chr7_1:72668664-72668683 | Msa1036320:CDS | 55.0% | |
| GCAGGGTACAAGTAGTTGGG+TGG | - | chr7_1:72668559-72668578 | Msa1036320:intron | 55.0% | |
| TGGCTGGTGCACCTTACTTG+AGG | - | chr7_1:72668664-72668683 | Msa1036320:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 72668037 | 72669393 | 72668037 | ID=Msa1036320;Name=Msa1036320 |
| chr7_1 | mRNA | 72668037 | 72669393 | 72668037 | ID=Msa1036320-mRNA-1;Parent=Msa1036320;Name=Msa1036320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=178|1|1|1|1|1|3|362|202 |
| chr7_1 | exon | 72668037 | 72668471 | 72668037 | ID=Msa1036320-mRNA-1:exon:17725;Parent=Msa1036320-mRNA-1 |
| chr7_1 | exon | 72668568 | 72668867 | 72668568 | ID=Msa1036320-mRNA-1:exon:17724;Parent=Msa1036320-mRNA-1 |
| chr7_1 | exon | 72668980 | 72669393 | 72668980 | ID=Msa1036320-mRNA-1:exon:17723;Parent=Msa1036320-mRNA-1 |
| chr7_1 | five_prime_UTR | 72669216 | 72669393 | 72669216 | ID=Msa1036320-mRNA-1:five_prime_utr;Parent=Msa1036320-mRNA-1 |
| chr7_1 | CDS | 72668980 | 72669215 | 72668980 | ID=Msa1036320-mRNA-1:cds;Parent=Msa1036320-mRNA-1 |
| chr7_1 | CDS | 72668568 | 72668867 | 72668568 | ID=Msa1036320-mRNA-1:cds;Parent=Msa1036320-mRNA-1 |
| chr7_1 | CDS | 72668399 | 72668471 | 72668399 | ID=Msa1036320-mRNA-1:cds;Parent=Msa1036320-mRNA-1 |
| chr7_1 | three_prime_UTR | 72668037 | 72668398 | 72668037 | ID=Msa1036320-mRNA-1:three_prime_utr;Parent=Msa1036320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
