AlfalfaGEDB | Msa0212750

M. sativa cultivar zhongmu-4 / Msa0212750

KEGG: K14325
GO: GO:0000375 GO:0000377 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008380 GO:0009743 GO:0009756 GO:0009987 GO:0010033 GO:0010182 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0023052 GO:0031974 GO:0031981 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013 GO:0070887 GO:0071310 GO:0071322 GO:0071704 GO:0090304 GO:1901360 GO:1901700 GO:1901701
PFAM: PF00076.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212750	XP_003596202.1	99.759	415	1	0	1	415	1	415	0.0	718

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212750	sp\|Q9SEE9\|SR45_ARATH	70.968	186	39	5	96	275	94	270	6.29e-67	221

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212750	G7IJA2	99.759	415	1	0	1	415	1	415	0.0	718

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000490	Msa0212750	0.830186	3.383729e-55	-8.615850e-47
Msa0000940	Msa0212750	-0.835174	1.956773e-56	-8.615850e-47
Msa0005000	Msa0212750	0.860583	1.866644e-63	-8.615850e-47
Msa0006880	Msa0212750	-0.821592	3.720263e-53	-8.615850e-47
Msa0008840	Msa0212750	-0.803400	3.549282e-49	-8.615850e-47
Msa0015680	Msa0212750	-0.806231	9.093765e-50	-8.615850e-47
Msa0023830	Msa0212750	0.802314	5.948855e-49	-8.615850e-47
Msa0026660	Msa0212750	-0.810275	1.249641e-50	-8.615850e-47
Msa0032840	Msa0212750	0.803505	3.376972e-49	-8.615850e-47
Msa0036370	Msa0212750	-0.838268	3.180869e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212750	MtrunA17_Chr2g0312111	99.759	415	1	0	1	415	1	415	0.0	718

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212750	AT1G16610.7	70.968	186	39	5	96	275	94	270	3.29e-68	221
Msa0212750	AT1G16610.6	70.968	186	39	5	96	275	94	270	3.29e-68	221
Msa0212750	AT1G16610.1	70.968	186	39	5	96	275	94	270	6.39e-68	221
Msa0212750	AT1G16610.3	70.968	186	39	5	96	275	94	270	1.58e-67	221
Msa0212750	AT1G16610.5	64.550	189	39	5	96	275	94	263	2.54e-64	211
Msa0212750	AT1G16610.4	64.550	189	39	5	96	275	94	263	2.62e-64	211
Msa0212750	AT1G16610.2	64.550	189	39	5	96	275	94	263	3.73e-64	211
Msa0212750	AT5G54580.1	35.043	117	69	3	73	188	34	144	1.49e-11	62.8

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Find 175 sgRNAs with CRISPR-Local

Find 618 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCATTATTGTACATGGA+TGG	0.635945	2_1:-54893597	Msa0212750:CDS
AAATATGGTTACCGGCGTCT+TGG	0.480344	2_1:+54892839	None:intergenic
AACCCTTGATAAACCCTAGC+TGG	0.519710	2_1:+54897323	None:intergenic
AACGACATTGCCATCTATTT+GGG	0.327488	2_1:+54893472	None:intergenic
AACGTCTCCGACCTGGGCCT+GGG	0.369557	2_1:+54892876	None:intergenic
AACTTTGACAACAGGTTTCC+CGG	0.310020	2_1:-54890869	Msa0212750:intron
AATAATGTGTATGTTTGGTG+TGG	0.635683	2_1:-54889344	Msa0212750:three_prime_UTR
AATAGATGGCAATGTCGTTA+AGG	0.466748	2_1:-54893468	Msa0212750:CDS
AATCACAAGCCAACCTTGCA+GGG	0.524366	2_1:+54892990	None:intergenic
AATCTCTTCTAGAAATCCTG+TGG	0.631584	2_1:-54889398	Msa0212750:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTAAAGTTGAATCGAAGGA+TGG	+	chr2_1:54889644-54889663	None:intergenic	30.0%
GGTTCAAAATTTCAACGATT+TGG	+	chr2_1:54889672-54889691	None:intergenic	30.0%
CAATTAGGGGAAATTTGAAA+TGG	-	chr2_1:54889861-54889880	Msa0212750:intron	30.0%
ATGTTCTATCACAGCATATT+TGG	+	chr2_1:54890193-54890212	None:intergenic	30.0%
TCCCAACATGGATAAAATTA+CGG	+	chr2_1:54890220-54890239	None:intergenic	30.0%
TAACAGTCTACTATATGTTG+AGG	-	chr2_1:54890669-54890688	Msa0212750:intron	30.0%
TTGTATATATTGCATATCCC+TGG	+	chr2_1:54890728-54890747	None:intergenic	30.0%
AGGGATATGCAATATATACA+AGG	-	chr2_1:54890727-54890746	Msa0212750:intron	30.0%
TCAAAATTGAGATTCTGCAT+AGG	-	chr2_1:54890753-54890772	Msa0212750:intron	30.0%
ACATGTTAGCAAGAGATATA+AGG	-	chr2_1:54891024-54891043	Msa0212750:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	54889344	54897401	54889344	ID=Msa0212750;Name=Msa0212750
chr2_1	mRNA	54889344	54897401	54889344	ID=Msa0212750-mRNA-1;Parent=Msa0212750;Name=Msa0212750-mRNA-1;_AED=0.11;_eAED=0.11;_QI=100\|1\|1\|1\|1\|1\|12\|367\|415
chr2_1	exon	54889344	54889780	54889344	ID=Msa0212750-mRNA-1:exon:15288;Parent=Msa0212750-mRNA-1
chr2_1	exon	54890843	54890877	54890843	ID=Msa0212750-mRNA-1:exon:15287;Parent=Msa0212750-mRNA-1
chr2_1	exon	54890955	54891018	54890955	ID=Msa0212750-mRNA-1:exon:15286;Parent=Msa0212750-mRNA-1
chr2_1	exon	54892632	54892748	54892632	ID=Msa0212750-mRNA-1:exon:15285;Parent=Msa0212750-mRNA-1
chr2_1	exon	54892851	54892925	54892851	ID=Msa0212750-mRNA-1:exon:15284;Parent=Msa0212750-mRNA-1
chr2_1	exon	54893004	54893241	54893004	ID=Msa0212750-mRNA-1:exon:15283;Parent=Msa0212750-mRNA-1
chr2_1	exon	54893336	54893495	54893336	ID=Msa0212750-mRNA-1:exon:15282;Parent=Msa0212750-mRNA-1
chr2_1	exon	54893596	54893676	54893596	ID=Msa0212750-mRNA-1:exon:15281;Parent=Msa0212750-mRNA-1
chr2_1	exon	54893761	54893807	54893761	ID=Msa0212750-mRNA-1:exon:15280;Parent=Msa0212750-mRNA-1
chr2_1	exon	54894180	54894268	54894180	ID=Msa0212750-mRNA-1:exon:15279;Parent=Msa0212750-mRNA-1
chr2_1	exon	54896349	54896429	54896349	ID=Msa0212750-mRNA-1:exon:15278;Parent=Msa0212750-mRNA-1
chr2_1	exon	54897111	54897401	54897111	ID=Msa0212750-mRNA-1:exon:15277;Parent=Msa0212750-mRNA-1
chr2_1	five_prime_UTR	54897302	54897401	54897302	ID=Msa0212750-mRNA-1:five_prime_utr;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54897111	54897301	54897111	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54896349	54896429	54896349	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54894180	54894268	54894180	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54893761	54893807	54893761	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54893596	54893676	54893596	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54893336	54893495	54893336	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54893004	54893241	54893004	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54892851	54892925	54892851	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54892632	54892748	54892632	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54890955	54891018	54890955	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54890843	54890877	54890843	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	CDS	54889711	54889780	54889711	ID=Msa0212750-mRNA-1:cds;Parent=Msa0212750-mRNA-1
chr2_1	three_prime_UTR	54889344	54889710	54889344	ID=Msa0212750-mRNA-1:three_prime_utr;Parent=Msa0212750-mRNA-1

Gene Sequence

>Msa0212750

ATGGCGAAACCTGGTCGAGCTCGTCGCTCACCACCGTCAGGTTCTGTCTCCGGATCTTCTTCTCTCTCCTCCTCTTCCCGTTCATCTTCTCGCTCTCGCTCCCGTTCCAGATCCTTCTCTTCCTCTTCTCGCTCTCCCTCCCGCAGTTCCAAGAGCCGCAGCCGTAGTCCTCCTCCTCCCAGACGCAAAAGTTCTGCTGAACCAGCAAGGCGAGGTCGATCTCCTCCTCTTCCTCCACCTCCACAGTCTAAGAGACCTTCTCCTCCCCCAAGGAAACCTTCTCCTGTACGTGAGTCTCTTGTTCTCCACGTTGAGAAACTCAGCAGGAATGTCAATGAAGGCCATTTGAAAGAAATTTTCAGTAATTTTGGTGAGGTTGTAAGTGTGGAGTTGGTGATGGATAGAGCTGTTAATCTTCCAAAAGGATATGGATATGTGCATTTCAAGACAAGAGGGGAAGCTGAAAAAGCATTATTGTACATGGATGGTGCCCAAATAGATGGCAATGTCGTTAAGGCAAGATTTACTCTACCTCCAAGACAGAAAACTTCACCACCCCCAAAAGCTGTTGCTCCAAAGAGAGATGCACCCAGGACTGATAATGCTGGTGCAGAAGTTGAAAAAGATGGGCCAAAGCGTCCAAGAGAATCTTCTCCTCGGAGAAAACCTCCTCCCTCACCACGAAGAAGATCTCCTGTGCCTCGAAGAGCTGGATCTCCAAGACGACCAGAATCTCCTCGCCGCCGTGCTGATTCTCCTGTTCGTCGTCGATTAGACTCTCCTTATCGTCGCGGAGCTGGAGACACACCTCCTAGGAGGAGACCTGTGTCTCCCGGAAGAGGTCGTTCTCCATCTCCACCACCAAGGCGCCTTAGATCCCCTGCAAGGGTATCACCTCGAAGGATGCGTGGAAGCCCAGGCCCAGGTCGGAGACGTTCTCCTCCTCCACCTCCAAGACGCCGTTCACCTCCTAGACGAGCCCGTAGTCCTCCTAGAAGATCTCCAGTTGGTCGTAGGCGTAGTCGCTCTCCAATACGTAGATCTGCACGCTCACGCTCAAGATCATTCTCACCTCGCAGAGGTCGACCACCTATGAGACGGGGAAGGTCATCATCTTACTCTGATTCGCCAAGTCCTCGCAAGGTTTCCCGGAGATCTAAGAGTCGCAGTCCAAGAAGGCCTTTGAAAGGACGAGCCAGTAGCAACAGTAGCAGCAGCAGTTCACCACCCCCAGCTCGCAAACCATAG

Protein sequence

>Msa0212750

MAKPGRARRSPPSGSVSGSSSLSSSSRSSSRSRSRSRSFSSSSRSPSRSSKSRSRSPPPPRRKSSAEPARRGRSPPLPPPPQSKRPSPPPRKPSPVRESLVLHVEKLSRNVNEGHLKEIFSNFGEVVSVELVMDRAVNLPKGYGYVHFKTRGEAEKALLYMDGAQIDGNVVKARFTLPPRQKTSPPPKAVAPKRDAPRTDNAGAEVEKDGPKRPRESSPRRKPPPSPRRRSPVPRRAGSPRRPESPRRRADSPVRRRLDSPYRRGAGDTPPRRRPVSPGRGRSPSPPPRRLRSPARVSPRRMRGSPGPGRRRSPPPPPRRRSPPRRARSPPRRSPVGRRRSRSPIRRSARSRSRSFSPRRGRPPMRRGRSSSYSDSPSPRKVSRRSKSRSPRRPLKGRASSNSSSSSSPPPARKP*