Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076600 | XP_039684299.1 | 96.111 | 180 | 5 | 1 | 1 | 178 | 1 | 180 | 4.21e-123 | 355 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076600 | sp|O24543|AX22E_VIGRR | 73.224 | 183 | 40 | 5 | 1 | 178 | 1 | 179 | 2.92e-81 | 242 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076600 | A0A396HA94 | 96.111 | 180 | 5 | 1 | 1 | 178 | 1 | 180 | 2.01e-123 | 355 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1076600 | TR | AUX/IAA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa1076600 | 0.866855 | 2.101204e-65 | -8.615850e-47 |
| Msa0609970 | Msa1076600 | 0.816876 | 4.410832e-52 | -8.615850e-47 |
| Msa0707390 | Msa1076600 | 0.802861 | 4.588453e-49 | -8.615850e-47 |
| Msa0730640 | Msa1076600 | 0.815328 | 9.779509e-52 | -8.615850e-47 |
| Msa0784620 | Msa1076600 | 0.804692 | 1.911902e-49 | -8.615850e-47 |
| Msa0212750 | Msa1076600 | -0.850003 | 2.247877e-60 | -8.615850e-47 |
| Msa0403190 | Msa1076600 | 0.808306 | 3.304174e-50 | -8.615850e-47 |
| Msa0449820 | Msa1076600 | 0.802874 | 4.561047e-49 | -8.615850e-47 |
| Msa1036320 | Msa1076600 | 0.922472 | 9.406493e-89 | -8.615850e-47 |
| Msa1071660 | Msa1076600 | 0.805264 | 1.451684e-49 | -8.615850e-47 |
| Msa1076600 | Msa1114040 | 0.816525 | 5.287705e-52 | -8.615850e-47 |
| Msa1076600 | Msa1133630 | 0.864381 | 1.266772e-64 | -8.615850e-47 |
| Msa1076600 | Msa1158770 | 0.802718 | 4.912574e-49 | -8.615850e-47 |
| Msa1076600 | Msa1246530 | -0.816785 | 4.622415e-52 | -8.615850e-47 |
| Msa1076600 | Msa1373880 | 0.864943 | 8.446912e-65 | -8.615850e-47 |
| Msa1076600 | Msa1422840 | 0.803091 | 4.112219e-49 | -8.615850e-47 |
| Msa1076600 | Msa1438450 | 0.810040 | 1.404520e-50 | -8.615850e-47 |
| Msa0895310 | Msa1076600 | 0.801469 | 8.871605e-49 | -8.615850e-47 |
| Msa0959010 | Msa1076600 | 0.807375 | 5.211529e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076600 | MtrunA17_Chr7g0260621 | 96.111 | 180 | 5 | 1 | 1 | 178 | 1 | 180 | 3.87e-127 | 355 |
| Msa1076600 | MtrunA17_Chr1g0184801 | 71.098 | 173 | 43 | 5 | 11 | 179 | 12 | 181 | 3.07e-79 | 234 |
| Msa1076600 | MtrunA17_Chr1g0166011 | 60.947 | 169 | 57 | 4 | 11 | 178 | 1 | 161 | 4.45e-66 | 200 |
| Msa1076600 | MtrunA17_Chr1g0187961 | 56.471 | 170 | 49 | 5 | 11 | 178 | 11 | 157 | 1.23e-59 | 183 |
| Msa1076600 | MtrunA17_Chr6g0486121 | 44.231 | 208 | 77 | 7 | 11 | 179 | 15 | 222 | 6.47e-43 | 143 |
| Msa1076600 | MtrunA17_Chr1g0190711 | 41.667 | 216 | 72 | 7 | 10 | 179 | 14 | 221 | 3.18e-39 | 134 |
| Msa1076600 | MtrunA17_Chr1g0187921 | 41.709 | 199 | 82 | 7 | 11 | 178 | 8 | 203 | 8.75e-38 | 130 |
| Msa1076600 | MtrunA17_Chr5g0428141 | 37.647 | 255 | 77 | 6 | 6 | 178 | 60 | 314 | 4.19e-37 | 130 |
| Msa1076600 | MtrunA17_Chr8g0390281 | 39.918 | 243 | 77 | 10 | 6 | 179 | 19 | 261 | 4.25e-37 | 129 |
| Msa1076600 | MtrunA17_Chr2g0331411 | 46.358 | 151 | 57 | 3 | 52 | 178 | 143 | 293 | 7.87e-37 | 129 |
| Msa1076600 | MtrunA17_Chr8g0366881 | 37.349 | 249 | 75 | 8 | 11 | 178 | 67 | 315 | 1.51e-36 | 129 |
| Msa1076600 | MtrunA17_Chr1g0184791 | 39.171 | 217 | 82 | 7 | 2 | 178 | 6 | 212 | 2.12e-36 | 126 |
| Msa1076600 | MtrunA17_Chr5g0411501 | 35.659 | 258 | 82 | 10 | 6 | 179 | 46 | 303 | 3.82e-34 | 123 |
| Msa1076600 | MtrunA17_Chr7g0260641 | 37.619 | 210 | 86 | 7 | 11 | 178 | 11 | 217 | 4.72e-31 | 112 |
| Msa1076600 | MtrunA17_Chr4g0004181 | 43.558 | 163 | 64 | 4 | 16 | 178 | 11 | 145 | 9.86e-31 | 110 |
| Msa1076600 | MtrunA17_Chr2g0330951 | 31.416 | 226 | 91 | 7 | 14 | 178 | 15 | 237 | 9.81e-23 | 91.7 |
| Msa1076600 | MtrunA17_Chr2g0332141 | 49.398 | 83 | 29 | 2 | 108 | 179 | 8 | 88 | 5.04e-20 | 80.9 |
| Msa1076600 | MtrunA17_Chr8g0340731 | 31.737 | 167 | 71 | 4 | 51 | 178 | 81 | 243 | 5.66e-20 | 84.3 |
| Msa1076600 | MtrunA17_Chr1g0183251 | 32.258 | 155 | 47 | 4 | 81 | 178 | 82 | 235 | 1.51e-17 | 77.8 |
| Msa1076600 | MtrunA17_Chr4g0069561 | 36.190 | 105 | 63 | 2 | 76 | 179 | 66 | 167 | 8.97e-17 | 73.9 |
| Msa1076600 | MtrunA17_Chr7g0270851 | 40.187 | 107 | 57 | 3 | 74 | 179 | 42 | 142 | 1.36e-16 | 73.2 |
| Msa1076600 | MtrunA17_Chr1g0193861 | 39.000 | 100 | 50 | 3 | 85 | 179 | 64 | 157 | 2.94e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1076600 | AT5G43700.1 | 57.059 | 170 | 53 | 3 | 10 | 178 | 10 | 160 | 1.19e-61 | 189 |
| Msa1076600 | AT1G04240.1 | 55.114 | 176 | 57 | 4 | 10 | 178 | 4 | 164 | 2.35e-59 | 183 |
| Msa1076600 | AT1G04240.2 | 54.444 | 180 | 60 | 4 | 6 | 178 | 100 | 264 | 9.35e-59 | 185 |
| Msa1076600 | AT3G23030.1 | 55.747 | 174 | 38 | 4 | 11 | 178 | 9 | 149 | 1.03e-54 | 171 |
| Msa1076600 | AT3G23030.2 | 55.747 | 174 | 38 | 4 | 11 | 178 | 96 | 236 | 4.79e-54 | 172 |
| Msa1076600 | AT4G14560.1 | 57.143 | 168 | 44 | 3 | 11 | 178 | 7 | 146 | 2.47e-51 | 162 |
| Msa1076600 | AT3G04730.1 | 43.062 | 209 | 73 | 7 | 10 | 178 | 1 | 203 | 1.10e-41 | 140 |
| Msa1076600 | AT1G04250.1 | 41.837 | 196 | 80 | 6 | 11 | 178 | 7 | 196 | 1.90e-40 | 137 |
| Msa1076600 | AT4G29080.1 | 41.702 | 235 | 70 | 10 | 11 | 178 | 38 | 272 | 2.33e-40 | 139 |
| Msa1076600 | AT3G23050.2 | 39.806 | 206 | 86 | 6 | 10 | 178 | 5 | 209 | 1.83e-38 | 131 |
| Msa1076600 | AT4G14550.3 | 40.816 | 196 | 87 | 5 | 11 | 178 | 1 | 195 | 2.07e-38 | 130 |
| Msa1076600 | AT4G14550.2 | 40.816 | 196 | 87 | 5 | 11 | 178 | 1 | 195 | 3.90e-38 | 131 |
| Msa1076600 | AT4G14550.1 | 40.816 | 196 | 87 | 5 | 11 | 178 | 1 | 195 | 3.92e-38 | 130 |
| Msa1076600 | AT3G23050.1 | 39.806 | 206 | 86 | 6 | 10 | 178 | 5 | 209 | 4.42e-38 | 131 |
| Msa1076600 | AT5G65670.1 | 50.000 | 124 | 39 | 5 | 78 | 178 | 180 | 303 | 3.26e-31 | 115 |
| Msa1076600 | AT5G65670.2 | 50.000 | 124 | 39 | 5 | 78 | 178 | 180 | 303 | 3.53e-31 | 115 |
| Msa1076600 | AT2G22670.5 | 35.417 | 240 | 83 | 8 | 11 | 178 | 47 | 286 | 3.77e-31 | 115 |
| Msa1076600 | AT2G22670.2 | 35.417 | 240 | 83 | 8 | 11 | 178 | 47 | 286 | 3.77e-31 | 115 |
| Msa1076600 | AT2G22670.3 | 35.417 | 240 | 83 | 8 | 11 | 178 | 47 | 286 | 4.21e-31 | 115 |
| Msa1076600 | AT2G22670.1 | 35.417 | 240 | 83 | 8 | 11 | 178 | 47 | 286 | 4.21e-31 | 115 |
| Msa1076600 | AT2G22670.4 | 35.417 | 240 | 83 | 8 | 11 | 178 | 64 | 303 | 4.81e-31 | 115 |
| Msa1076600 | AT1G52830.1 | 43.976 | 166 | 79 | 8 | 16 | 179 | 11 | 164 | 6.67e-31 | 111 |
| Msa1076600 | AT1G15580.1 | 41.818 | 165 | 62 | 5 | 16 | 179 | 13 | 144 | 5.51e-30 | 108 |
| Msa1076600 | AT3G15540.1 | 41.212 | 165 | 87 | 4 | 16 | 178 | 11 | 167 | 1.90e-29 | 107 |
| Msa1076600 | AT3G23050.3 | 37.805 | 164 | 76 | 5 | 10 | 148 | 5 | 167 | 1.53e-24 | 94.4 |
| Msa1076600 | AT3G16500.2 | 34.615 | 208 | 87 | 8 | 14 | 179 | 36 | 236 | 2.44e-24 | 96.3 |
| Msa1076600 | AT3G16500.1 | 34.615 | 208 | 87 | 8 | 14 | 179 | 36 | 236 | 2.55e-24 | 96.3 |
| Msa1076600 | AT4G14550.4 | 39.041 | 146 | 73 | 3 | 11 | 141 | 1 | 145 | 1.97e-23 | 91.7 |
| Msa1076600 | AT4G28640.3 | 39.716 | 141 | 50 | 5 | 73 | 178 | 80 | 220 | 4.78e-21 | 87.0 |
| Msa1076600 | AT4G28640.1 | 39.716 | 141 | 50 | 5 | 73 | 178 | 80 | 220 | 4.90e-21 | 87.0 |
| Msa1076600 | AT4G28640.2 | 39.716 | 141 | 50 | 5 | 73 | 178 | 80 | 220 | 3.50e-20 | 85.9 |
| Msa1076600 | AT1G51950.1 | 29.665 | 209 | 90 | 7 | 14 | 179 | 40 | 234 | 6.43e-20 | 84.3 |
| Msa1076600 | AT3G17600.1 | 41.237 | 97 | 50 | 2 | 85 | 178 | 48 | 140 | 1.77e-19 | 80.9 |
| Msa1076600 | AT1G04550.2 | 35.443 | 158 | 65 | 4 | 58 | 179 | 47 | 203 | 5.59e-19 | 81.3 |
| Msa1076600 | AT2G33310.3 | 36.646 | 161 | 59 | 5 | 56 | 179 | 56 | 210 | 9.81e-19 | 80.9 |
| Msa1076600 | AT2G33310.1 | 36.646 | 161 | 59 | 5 | 56 | 179 | 56 | 210 | 9.81e-19 | 80.9 |
| Msa1076600 | AT2G33310.2 | 34.591 | 159 | 67 | 4 | 58 | 179 | 53 | 211 | 1.27e-18 | 80.5 |
| Msa1076600 | AT2G46990.2 | 46.575 | 73 | 39 | 0 | 107 | 179 | 85 | 157 | 1.69e-16 | 73.2 |
| Msa1076600 | AT5G25890.1 | 32.824 | 131 | 69 | 4 | 56 | 178 | 27 | 146 | 1.90e-16 | 73.6 |
| Msa1076600 | AT2G46990.1 | 46.575 | 73 | 39 | 0 | 107 | 179 | 85 | 157 | 2.81e-16 | 72.8 |
| Msa1076600 | AT3G62100.2 | 42.683 | 82 | 47 | 0 | 98 | 179 | 74 | 155 | 5.99e-16 | 71.6 |
| Msa1076600 | AT3G62100.1 | 42.683 | 82 | 47 | 0 | 98 | 179 | 74 | 155 | 8.48e-16 | 71.6 |
| Msa1076600 | AT1G04100.1 | 34.667 | 150 | 50 | 5 | 78 | 179 | 90 | 239 | 2.15e-15 | 72.0 |
| Msa1076600 | AT1G80390.1 | 35.433 | 127 | 59 | 4 | 16 | 142 | 19 | 122 | 4.26e-14 | 66.2 |
Find 64 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTATTTATTTATAATTT+TGG | 0.106018 | 7_2:-75110526 | Msa1076600:three_prime_UTR |
| CTCAGAACTTCTTAAGGTTT+TGG | 0.224721 | 7_2:-75111120 | Msa1076600:CDS |
| CTTTATTTATATAGAGATTA+AGG | 0.258286 | 7_2:-75111668 | Msa1076600:five_prime_UTR |
| ATAGAGTTTGGATTTGGATT+TGG | 0.302329 | 7_2:-75111707 | Msa1076600:five_prime_UTR |
| TTCTTCCTAAAAGATCTAAT+TGG | 0.303224 | 7_2:+75111251 | None:intergenic |
| AATTAATTATTATCAAGAAA+TGG | 0.308561 | 7_2:-75111639 | Msa1076600:exon |
| CAGAATTTATCAATAGAGTT+TGG | 0.318162 | 7_2:-75111719 | Msa1076600:five_prime_UTR |
| TTATCAATAGAGTTTGGATT+TGG | 0.319954 | 7_2:-75111713 | Msa1076600:five_prime_UTR |
| TTTGAGAGAAAGAAAATATA+AGG | 0.321226 | 7_2:-75110685 | Msa1076600:three_prime_UTR |
| AGAATTGATGATTGAAGAAA+TGG | 0.327625 | 7_2:+75111775 | None:intergenic |
| GAACTACTCAGAACTTCTTA+AGG | 0.361311 | 7_2:-75111126 | Msa1076600:CDS |
| ATTAATTATTATCAAGAAAT+GGG | 0.388582 | 7_2:-75111638 | Msa1076600:exon |
| ATTAACAAAAGCACAAAATC+AGG | 0.391339 | 7_2:-75110795 | Msa1076600:three_prime_UTR |
| TTATGTATGACTTACTTTGT+AGG | 0.395482 | 7_2:+75111392 | None:intergenic |
| AATATGTTCAAGTGTACATT+TGG | 0.401164 | 7_2:-75111095 | Msa1076600:CDS |
| GTCATGATCACTTGTGGTTG+TGG | 0.404340 | 7_2:+75111430 | None:intergenic |
| ATTTGCAGGGTACAAGTAGT+TGG | 0.404443 | 7_2:-75111281 | Msa1076600:intron |
| TTTCTCTCAAATATCTAGAA+AGG | 0.408067 | 7_2:+75110697 | None:intergenic |
| AAGGCTTGACTTAAGAAATC+AGG | 0.411074 | 7_2:+75110716 | None:intergenic |
| GGATTTGGATTTGGATTTGA+AGG | 0.422068 | 7_2:-75111698 | Msa1076600:five_prime_UTR |
| ATCACCAGAGCTCTTAGAAA+TGG | 0.429190 | 7_2:+75111460 | None:intergenic |
| GAATTAAGATTGGGATTGCC+TGG | 0.450216 | 7_2:-75111572 | Msa1076600:CDS |
| GTGAAAGGATCAGAAGCAAA+AGG | 0.452877 | 7_2:-75110843 | Msa1076600:three_prime_UTR |
| GATTGTTCATCATCACTTCC+AGG | 0.453387 | 7_2:+75111554 | None:intergenic |
| AATTTAAGAACTTACTTCCA+TGG | 0.462324 | 7_2:+75110981 | None:intergenic |
| CAAGGACACAGAATTAAGAT+TGG | 0.462867 | 7_2:-75111582 | Msa1076600:CDS |
| GTTCTATAGAGGTGGCTTTG+AGG | 0.469784 | 7_2:-75110739 | Msa1076600:three_prime_UTR |
| TTGTAGGTTGGACAGTGTCT+TGG | 0.481019 | 7_2:+75111408 | None:intergenic |
| GTATGACTTACTTTGTAGGT+TGG | 0.482291 | 7_2:+75111396 | None:intergenic |
| CAACAAAATAAAGTGGAAGA+TGG | 0.489467 | 7_2:-75111221 | Msa1076600:CDS |
| TGAACATGCTCCTACTTATG+AGG | 0.497905 | 7_2:-75111039 | Msa1076600:CDS |
| TTCCTAAAAGATCTAATTGG+TGG | 0.498613 | 7_2:+75111254 | None:intergenic |
| GAATGAGATGAGAAGAAGCT+AGG | 0.499678 | 7_2:+75111797 | None:intergenic |
| AAGGACACAGAATTAAGATT+GGG | 0.515527 | 7_2:-75111581 | Msa1076600:CDS |
| TTTGCAGGGTACAAGTAGTT+GGG | 0.516885 | 7_2:-75111280 | Msa1076600:intron |
| ATGAGGATAAAGATGGTGAT+TGG | 0.518002 | 7_2:-75111022 | Msa1076600:CDS |
| GAGTCCATTTCTAAGAGCTC+TGG | 0.522835 | 7_2:-75111464 | Msa1076600:CDS |
| GTGAATATTCAGAAAGAGAA+GGG | 0.526820 | 7_2:-75111073 | Msa1076600:CDS |
| AATAAAGTGGAAGATGGAAG+TGG | 0.532994 | 7_2:-75111215 | Msa1076600:CDS |
| GATGGTGATTGGATGCTAGT+TGG | 0.542154 | 7_2:-75111011 | Msa1076600:CDS |
| TAGTTTACAACAAAATAAAG+TGG | 0.543416 | 7_2:-75111228 | Msa1076600:CDS |
| GGTGAATATTCAGAAAGAGA+AGG | 0.544646 | 7_2:-75111074 | Msa1076600:CDS |
| CCATCTTTATCCTCATAAGT+AGG | 0.549431 | 7_2:+75111029 | None:intergenic |
| CCTACTTATGAGGATAAAGA+TGG | 0.550050 | 7_2:-75111029 | Msa1076600:CDS |
| GAGCAGAGAGAGTTCTATAG+AGG | 0.551485 | 7_2:-75110750 | Msa1076600:three_prime_UTR |
| TGAAAGGATCAGAAGCAAAA+GGG | 0.552833 | 7_2:-75110842 | Msa1076600:three_prime_UTR |
| TATGTGAAAGTGAGCATGGC+TGG | 0.554233 | 7_2:-75111188 | Msa1076600:CDS |
| ATTAAAATATATACACAACA+TGG | 0.565005 | 7_2:-75110578 | Msa1076600:three_prime_UTR |
| ATGTACAATCAAAATAGCAT+TGG | 0.575074 | 7_2:+75110652 | None:intergenic |
| GTCTTGGTCATGATCACTTG+TGG | 0.583842 | 7_2:+75111424 | None:intergenic |
| CAGAGAGAGTTCTATAGAGG+TGG | 0.594735 | 7_2:-75110747 | Msa1076600:three_prime_UTR |
| AGGATCAGAAGCAAAAGGGT+TGG | 0.596397 | 7_2:-75110838 | Msa1076600:three_prime_UTR |
| TGTTTATATCCTCATGCAAG+AGG | 0.598442 | 7_2:-75110875 | Msa1076600:three_prime_UTR |
| TCAGAAAGAGAAGGGTACAA+TGG | 0.598816 | 7_2:-75111065 | Msa1076600:CDS |
| TGGCTGGTGCACCTTACTTG+AGG | 0.603488 | 7_2:-75111172 | Msa1076600:CDS |
| TTAAAATATATACACAACAT+GGG | 0.610245 | 7_2:-75110577 | Msa1076600:three_prime_UTR |
| TGCTAGTTGGAGATGTTCCA+TGG | 0.610466 | 7_2:-75110998 | Msa1076600:CDS |
| TATCTTCAGCCTCTTGCATG+AGG | 0.625803 | 7_2:+75110866 | None:intergenic |
| GCAGGGTACAAGTAGTTGGG+TGG | 0.630903 | 7_2:-75111277 | Msa1076600:intron |
| AAGAGGCTGAAGATAGTGAA+AGG | 0.636692 | 7_2:-75110858 | Msa1076600:three_prime_UTR |
| GATGATGAACAATCATGCAA+TGG | 0.654238 | 7_2:-75111545 | Msa1076600:CDS |
| GATGAACAATCATGCAATGG+TGG | 0.661335 | 7_2:-75111542 | Msa1076600:CDS |
| AGAGTTGATTATTAATCACA+AGG | 0.665606 | 7_2:-75111600 | Msa1076600:CDS |
| AATGTATGTGAAAGTGAGCA+TGG | 0.667106 | 7_2:-75111192 | Msa1076600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTATTTATTTATAATTT+TGG | - | chr7_2:75111749-75111768 | Msa1076600:five_prime_UTR | 0.0% |
| !!! | AATTTATTTATTTATAATTT+TGG | - | chr7_2:75111749-75111768 | Msa1076600:five_prime_UTR | 0.0% |
| !! | AATTAATTATTATCAAGAAA+TGG | - | chr7_2:75110636-75110655 | Msa1076600:three_prime_UTR | 10.0% |
| !! | ATTAATTATTATCAAGAAAT+GGG | - | chr7_2:75110637-75110656 | Msa1076600:three_prime_UTR | 10.0% |
| !! | AATTAATTATTATCAAGAAA+TGG | - | chr7_2:75110636-75110655 | Msa1076600:three_prime_UTR | 10.0% |
| !! | ATTAATTATTATCAAGAAAT+GGG | - | chr7_2:75110637-75110656 | Msa1076600:three_prime_UTR | 10.0% |
| !!! | CTTTATTTATATAGAGATTA+AGG | - | chr7_2:75110607-75110626 | Msa1076600:three_prime_UTR | 15.0% |
| !! | CAACATATATATGAATATAA+TGG | - | chr7_2:75110907-75110926 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | ATAAACTTTTGTTGATTTTT+TGG | - | chr7_2:75110939-75110958 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | TAAACTTTTGTTGATTTTTT+GGG | - | chr7_2:75110940-75110959 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | TTTAATTATTTTTGGTTTCA+TGG | - | chr7_2:75111335-75111354 | Msa1076600:intron | 15.0% |
| !! | ATTAAAATATATACACAACA+TGG | - | chr7_2:75111697-75111716 | Msa1076600:five_prime_UTR | 15.0% |
| !! | TTAAAATATATACACAACAT+GGG | - | chr7_2:75111698-75111717 | Msa1076600:five_prime_UTR | 15.0% |
| !!! | CTTTATTTATATAGAGATTA+AGG | - | chr7_2:75110607-75110626 | Msa1076600:three_prime_UTR | 15.0% |
| !! | CAACATATATATGAATATAA+TGG | - | chr7_2:75110907-75110926 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | ATAAACTTTTGTTGATTTTT+TGG | - | chr7_2:75110939-75110958 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | TAAACTTTTGTTGATTTTTT+GGG | - | chr7_2:75110940-75110959 | Msa1076600:three_prime_UTR | 15.0% |
| !!! | TTTAATTATTTTTGGTTTCA+TGG | - | chr7_2:75111335-75111354 | Msa1076600:intron | 15.0% |
| !! | ATTAAAATATATACACAACA+TGG | - | chr7_2:75111697-75111716 | Msa1076600:five_prime_UTR | 15.0% |
| !! | TTAAAATATATACACAACAT+GGG | - | chr7_2:75111698-75111717 | Msa1076600:five_prime_UTR | 15.0% |
| !! | TTAAATTGATGAATATTTGC+AGG | - | chr7_2:75110980-75110999 | Msa1076600:exon | 20.0% |
| !! | TAAATTGATGAATATTTGCA+GGG | - | chr7_2:75110981-75111000 | Msa1076600:exon | 20.0% |
| !! | TAGTTTACAACAAAATAAAG+TGG | - | chr7_2:75111047-75111066 | Msa1076600:CDS | 20.0% |
| !! | TTTGAGAGAAAGAAAATATA+AGG | - | chr7_2:75111590-75111609 | Msa1076600:CDS | 20.0% |
| !! | TTAAATTGATGAATATTTGC+AGG | - | chr7_2:75110980-75110999 | Msa1076600:exon | 20.0% |
| !! | TAAATTGATGAATATTTGCA+GGG | - | chr7_2:75110981-75111000 | Msa1076600:exon | 20.0% |
| !! | TAGTTTACAACAAAATAAAG+TGG | - | chr7_2:75111047-75111066 | Msa1076600:CDS | 20.0% |
| !! | TTTGAGAGAAAGAAAATATA+AGG | - | chr7_2:75111590-75111609 | Msa1076600:CDS | 20.0% |
| !! | AGAATTGATGATTGAAGAAA+TGG | + | chr7_2:75110503-75110522 | None:intergenic | 25.0% |
| ! | GAAAAATCTGATTAAGTCTT+TGG | + | chr7_2:75110537-75110556 | None:intergenic | 25.0% |
| ! | CAGAATTTATCAATAGAGTT+TGG | - | chr7_2:75110556-75110575 | Msa1076600:three_prime_UTR | 25.0% |
| ! | TTATCAATAGAGTTTGGATT+TGG | - | chr7_2:75110562-75110581 | Msa1076600:three_prime_UTR | 25.0% |
| !! | AGAGTTGATTATTAATCACA+AGG | - | chr7_2:75110675-75110694 | Msa1076600:three_prime_UTR | 25.0% |
| ! | TTATGTATGACTTACTTTGT+AGG | + | chr7_2:75110886-75110905 | None:intergenic | 25.0% |
| ! | TTCTTCCTAAAAGATCTAAT+TGG | + | chr7_2:75111027-75111046 | None:intergenic | 25.0% |
| ! | AATATGTTCAAGTGTACATT+TGG | - | chr7_2:75111180-75111199 | Msa1076600:CDS | 25.0% |
| ! | AATTTAAGAACTTACTTCCA+TGG | + | chr7_2:75111297-75111316 | None:intergenic | 25.0% |
| !! | ATTAACAAAAGCACAAAATC+AGG | - | chr7_2:75111480-75111499 | Msa1076600:CDS | 25.0% |
| ! | TTTCTCTCAAATATCTAGAA+AGG | + | chr7_2:75111581-75111600 | None:intergenic | 25.0% |
| ! | ATGTACAATCAAAATAGCAT+TGG | + | chr7_2:75111626-75111645 | None:intergenic | 25.0% |
| !! | AGAATTGATGATTGAAGAAA+TGG | + | chr7_2:75110503-75110522 | None:intergenic | 25.0% |
| ! | GAAAAATCTGATTAAGTCTT+TGG | + | chr7_2:75110537-75110556 | None:intergenic | 25.0% |
| ! | CAGAATTTATCAATAGAGTT+TGG | - | chr7_2:75110556-75110575 | Msa1076600:three_prime_UTR | 25.0% |
| ! | TTATCAATAGAGTTTGGATT+TGG | - | chr7_2:75110562-75110581 | Msa1076600:three_prime_UTR | 25.0% |
| !! | AGAGTTGATTATTAATCACA+AGG | - | chr7_2:75110675-75110694 | Msa1076600:three_prime_UTR | 25.0% |
| ! | TTATGTATGACTTACTTTGT+AGG | + | chr7_2:75110886-75110905 | None:intergenic | 25.0% |
| ! | TTCTTCCTAAAAGATCTAAT+TGG | + | chr7_2:75111027-75111046 | None:intergenic | 25.0% |
| ! | AATATGTTCAAGTGTACATT+TGG | - | chr7_2:75111180-75111199 | Msa1076600:CDS | 25.0% |
| ! | AATTTAAGAACTTACTTCCA+TGG | + | chr7_2:75111297-75111316 | None:intergenic | 25.0% |
| !! | ATTAACAAAAGCACAAAATC+AGG | - | chr7_2:75111480-75111499 | Msa1076600:CDS | 25.0% |
| ! | TTTCTCTCAAATATCTAGAA+AGG | + | chr7_2:75111581-75111600 | None:intergenic | 25.0% |
| ! | ATGTACAATCAAAATAGCAT+TGG | + | chr7_2:75111626-75111645 | None:intergenic | 25.0% |
| ATAGAGTTTGGATTTGGATT+TGG | - | chr7_2:75110568-75110587 | Msa1076600:three_prime_UTR | 30.0% | |
| AAGGACACAGAATTAAGATT+GGG | - | chr7_2:75110694-75110713 | Msa1076600:three_prime_UTR | 30.0% | |
| TTCCTAAAAGATCTAATTGG+TGG | + | chr7_2:75111024-75111043 | None:intergenic | 30.0% | |
| CAACAAAATAAAGTGGAAGA+TGG | - | chr7_2:75111054-75111073 | Msa1076600:CDS | 30.0% | |
| ! | AGATCTATTTTCCTCAAGTA+AGG | + | chr7_2:75111117-75111136 | None:intergenic | 30.0% |
| GTGAATATTCAGAAAGAGAA+GGG | - | chr7_2:75111202-75111221 | Msa1076600:CDS | 30.0% | |
| ! | GTGCTTTTGTTAATTTTGTG+AGG | + | chr7_2:75111474-75111493 | None:intergenic | 30.0% |
| ATAGAGTTTGGATTTGGATT+TGG | - | chr7_2:75110568-75110587 | Msa1076600:three_prime_UTR | 30.0% | |
| AAGGACACAGAATTAAGATT+GGG | - | chr7_2:75110694-75110713 | Msa1076600:three_prime_UTR | 30.0% | |
| TTCCTAAAAGATCTAATTGG+TGG | + | chr7_2:75111024-75111043 | None:intergenic | 30.0% | |
| CAACAAAATAAAGTGGAAGA+TGG | - | chr7_2:75111054-75111073 | Msa1076600:CDS | 30.0% | |
| ! | AGATCTATTTTCCTCAAGTA+AGG | + | chr7_2:75111117-75111136 | None:intergenic | 30.0% |
| GTGAATATTCAGAAAGAGAA+GGG | - | chr7_2:75111202-75111221 | Msa1076600:CDS | 30.0% | |
| ! | GTGCTTTTGTTAATTTTGTG+AGG | + | chr7_2:75111474-75111493 | None:intergenic | 30.0% |
| GGATTTGGATTTGGATTTGA+AGG | - | chr7_2:75110577-75110596 | Msa1076600:three_prime_UTR | 35.0% | |
| CAAGGACACAGAATTAAGAT+TGG | - | chr7_2:75110693-75110712 | Msa1076600:three_prime_UTR | 35.0% | |
| GATGATGAACAATCATGCAA+TGG | - | chr7_2:75110730-75110749 | Msa1076600:three_prime_UTR | 35.0% | |
| GTATGACTTACTTTGTAGGT+TGG | + | chr7_2:75110882-75110901 | None:intergenic | 35.0% | |
| AATAAAGTGGAAGATGGAAG+TGG | - | chr7_2:75111060-75111079 | Msa1076600:CDS | 35.0% | |
| AATGTATGTGAAAGTGAGCA+TGG | - | chr7_2:75111083-75111102 | Msa1076600:CDS | 35.0% | |
| GAACTACTCAGAACTTCTTA+AGG | - | chr7_2:75111149-75111168 | Msa1076600:CDS | 35.0% | |
| ! | CTCAGAACTTCTTAAGGTTT+TGG | - | chr7_2:75111155-75111174 | Msa1076600:CDS | 35.0% |
| GGTGAATATTCAGAAAGAGA+AGG | - | chr7_2:75111201-75111220 | Msa1076600:CDS | 35.0% | |
| CCATCTTTATCCTCATAAGT+AGG | + | chr7_2:75111249-75111268 | None:intergenic | 35.0% | |
| CCTACTTATGAGGATAAAGA+TGG | - | chr7_2:75111246-75111265 | Msa1076600:CDS | 35.0% | |
| ATGAGGATAAAGATGGTGAT+TGG | - | chr7_2:75111253-75111272 | Msa1076600:CDS | 35.0% | |
| TGTTTATATCCTCATGCAAG+AGG | - | chr7_2:75111400-75111419 | Msa1076600:intron | 35.0% | |
| TGAAAGGATCAGAAGCAAAA+GGG | - | chr7_2:75111433-75111452 | Msa1076600:CDS | 35.0% | |
| AAGGCTTGACTTAAGAAATC+AGG | + | chr7_2:75111562-75111581 | None:intergenic | 35.0% | |
| GGATTTGGATTTGGATTTGA+AGG | - | chr7_2:75110577-75110596 | Msa1076600:three_prime_UTR | 35.0% | |
| CAAGGACACAGAATTAAGAT+TGG | - | chr7_2:75110693-75110712 | Msa1076600:three_prime_UTR | 35.0% | |
| GATGATGAACAATCATGCAA+TGG | - | chr7_2:75110730-75110749 | Msa1076600:three_prime_UTR | 35.0% | |
| GTATGACTTACTTTGTAGGT+TGG | + | chr7_2:75110882-75110901 | None:intergenic | 35.0% | |
| AATAAAGTGGAAGATGGAAG+TGG | - | chr7_2:75111060-75111079 | Msa1076600:CDS | 35.0% | |
| AATGTATGTGAAAGTGAGCA+TGG | - | chr7_2:75111083-75111102 | Msa1076600:CDS | 35.0% | |
| GAACTACTCAGAACTTCTTA+AGG | - | chr7_2:75111149-75111168 | Msa1076600:CDS | 35.0% | |
| ! | CTCAGAACTTCTTAAGGTTT+TGG | - | chr7_2:75111155-75111174 | Msa1076600:CDS | 35.0% |
| GGTGAATATTCAGAAAGAGA+AGG | - | chr7_2:75111201-75111220 | Msa1076600:CDS | 35.0% | |
| CCATCTTTATCCTCATAAGT+AGG | + | chr7_2:75111249-75111268 | None:intergenic | 35.0% | |
| CCTACTTATGAGGATAAAGA+TGG | - | chr7_2:75111246-75111265 | Msa1076600:CDS | 35.0% | |
| ATGAGGATAAAGATGGTGAT+TGG | - | chr7_2:75111253-75111272 | Msa1076600:CDS | 35.0% | |
| TGTTTATATCCTCATGCAAG+AGG | - | chr7_2:75111400-75111419 | Msa1076600:intron | 35.0% | |
| TGAAAGGATCAGAAGCAAAA+GGG | - | chr7_2:75111433-75111452 | Msa1076600:CDS | 35.0% | |
| AAGGCTTGACTTAAGAAATC+AGG | + | chr7_2:75111562-75111581 | None:intergenic | 35.0% | |
| GAATGAGATGAGAAGAAGCT+AGG | + | chr7_2:75110481-75110500 | None:intergenic | 40.0% | |
| GAATTAAGATTGGGATTGCC+TGG | - | chr7_2:75110703-75110722 | Msa1076600:three_prime_UTR | 40.0% | |
| GATTGTTCATCATCACTTCC+AGG | + | chr7_2:75110724-75110743 | None:intergenic | 40.0% | |
| GATGAACAATCATGCAATGG+TGG | - | chr7_2:75110733-75110752 | Msa1076600:three_prime_UTR | 40.0% | |
| ATCACCAGAGCTCTTAGAAA+TGG | + | chr7_2:75110818-75110837 | None:intergenic | 40.0% | |
| ATTTGCAGGGTACAAGTAGT+TGG | - | chr7_2:75110994-75111013 | Msa1076600:CDS | 40.0% | |
| TTTGCAGGGTACAAGTAGTT+GGG | - | chr7_2:75110995-75111014 | Msa1076600:CDS | 40.0% | |
| ! | GGCCACCAATTAGATCTTTT+AGG | - | chr7_2:75111019-75111038 | Msa1076600:CDS | 40.0% |
| ! | TCAGAAAGAGAAGGGTACAA+TGG | - | chr7_2:75111210-75111229 | Msa1076600:CDS | 40.0% |
| TGAACATGCTCCTACTTATG+AGG | - | chr7_2:75111236-75111255 | Msa1076600:CDS | 40.0% | |
| AAGAGGCTGAAGATAGTGAA+AGG | - | chr7_2:75111417-75111436 | Msa1076600:CDS | 40.0% | |
| GTGAAAGGATCAGAAGCAAA+AGG | - | chr7_2:75111432-75111451 | Msa1076600:CDS | 40.0% | |
| GAATGAGATGAGAAGAAGCT+AGG | + | chr7_2:75110481-75110500 | None:intergenic | 40.0% | |
| GAATTAAGATTGGGATTGCC+TGG | - | chr7_2:75110703-75110722 | Msa1076600:three_prime_UTR | 40.0% | |
| GATTGTTCATCATCACTTCC+AGG | + | chr7_2:75110724-75110743 | None:intergenic | 40.0% | |
| GATGAACAATCATGCAATGG+TGG | - | chr7_2:75110733-75110752 | Msa1076600:three_prime_UTR | 40.0% | |
| ATCACCAGAGCTCTTAGAAA+TGG | + | chr7_2:75110818-75110837 | None:intergenic | 40.0% | |
| ATTTGCAGGGTACAAGTAGT+TGG | - | chr7_2:75110994-75111013 | Msa1076600:CDS | 40.0% | |
| TTTGCAGGGTACAAGTAGTT+GGG | - | chr7_2:75110995-75111014 | Msa1076600:CDS | 40.0% | |
| ! | GGCCACCAATTAGATCTTTT+AGG | - | chr7_2:75111019-75111038 | Msa1076600:CDS | 40.0% |
| ! | TCAGAAAGAGAAGGGTACAA+TGG | - | chr7_2:75111210-75111229 | Msa1076600:CDS | 40.0% |
| TGAACATGCTCCTACTTATG+AGG | - | chr7_2:75111236-75111255 | Msa1076600:CDS | 40.0% | |
| AAGAGGCTGAAGATAGTGAA+AGG | - | chr7_2:75111417-75111436 | Msa1076600:CDS | 40.0% | |
| GTGAAAGGATCAGAAGCAAA+AGG | - | chr7_2:75111432-75111451 | Msa1076600:CDS | 40.0% | |
| ! | GAGTCCATTTCTAAGAGCTC+TGG | - | chr7_2:75110811-75110830 | Msa1076600:three_prime_UTR | 45.0% |
| GTCATGATCACTTGTGGTTG+TGG | + | chr7_2:75110848-75110867 | None:intergenic | 45.0% | |
| GTCTTGGTCATGATCACTTG+TGG | + | chr7_2:75110854-75110873 | None:intergenic | 45.0% | |
| ! | TTGTAGGTTGGACAGTGTCT+TGG | + | chr7_2:75110870-75110889 | None:intergenic | 45.0% |
| TATGTGAAAGTGAGCATGGC+TGG | - | chr7_2:75111087-75111106 | Msa1076600:CDS | 45.0% | |
| GATGGTGATTGGATGCTAGT+TGG | - | chr7_2:75111264-75111283 | Msa1076600:CDS | 45.0% | |
| TGCTAGTTGGAGATGTTCCA+TGG | - | chr7_2:75111277-75111296 | Msa1076600:intron | 45.0% | |
| TATCTTCAGCCTCTTGCATG+AGG | + | chr7_2:75111412-75111431 | None:intergenic | 45.0% | |
| AGGATCAGAAGCAAAAGGGT+TGG | - | chr7_2:75111437-75111456 | Msa1076600:CDS | 45.0% | |
| GAGCAGAGAGAGTTCTATAG+AGG | - | chr7_2:75111525-75111544 | Msa1076600:CDS | 45.0% | |
| CAGAGAGAGTTCTATAGAGG+TGG | - | chr7_2:75111528-75111547 | Msa1076600:CDS | 45.0% | |
| ! | GTTCTATAGAGGTGGCTTTG+AGG | - | chr7_2:75111536-75111555 | Msa1076600:CDS | 45.0% |
| ! | GAGTCCATTTCTAAGAGCTC+TGG | - | chr7_2:75110811-75110830 | Msa1076600:three_prime_UTR | 45.0% |
| GTCATGATCACTTGTGGTTG+TGG | + | chr7_2:75110848-75110867 | None:intergenic | 45.0% | |
| GTCTTGGTCATGATCACTTG+TGG | + | chr7_2:75110854-75110873 | None:intergenic | 45.0% | |
| ! | TTGTAGGTTGGACAGTGTCT+TGG | + | chr7_2:75110870-75110889 | None:intergenic | 45.0% |
| TATGTGAAAGTGAGCATGGC+TGG | - | chr7_2:75111087-75111106 | Msa1076600:CDS | 45.0% | |
| GATGGTGATTGGATGCTAGT+TGG | - | chr7_2:75111264-75111283 | Msa1076600:CDS | 45.0% | |
| TGCTAGTTGGAGATGTTCCA+TGG | - | chr7_2:75111277-75111296 | Msa1076600:intron | 45.0% | |
| TATCTTCAGCCTCTTGCATG+AGG | + | chr7_2:75111412-75111431 | None:intergenic | 45.0% | |
| AGGATCAGAAGCAAAAGGGT+TGG | - | chr7_2:75111437-75111456 | Msa1076600:CDS | 45.0% | |
| GAGCAGAGAGAGTTCTATAG+AGG | - | chr7_2:75111525-75111544 | Msa1076600:CDS | 45.0% | |
| CAGAGAGAGTTCTATAGAGG+TGG | - | chr7_2:75111528-75111547 | Msa1076600:CDS | 45.0% | |
| ! | GTTCTATAGAGGTGGCTTTG+AGG | - | chr7_2:75111536-75111555 | Msa1076600:CDS | 45.0% |
| !!! | CTTTTAATTTTAATTATTTT+TGG | - | chr7_2:75111327-75111346 | Msa1076600:intron | 5.0% |
| !!! | CTTTTAATTTTAATTATTTT+TGG | - | chr7_2:75111327-75111346 | Msa1076600:intron | 5.0% |
| GCAGGGTACAAGTAGTTGGG+TGG | - | chr7_2:75110998-75111017 | Msa1076600:CDS | 55.0% | |
| TGGCTGGTGCACCTTACTTG+AGG | - | chr7_2:75111103-75111122 | Msa1076600:CDS | 55.0% | |
| GCAGGGTACAAGTAGTTGGG+TGG | - | chr7_2:75110998-75111017 | Msa1076600:CDS | 55.0% | |
| TGGCTGGTGCACCTTACTTG+AGG | - | chr7_2:75111103-75111122 | Msa1076600:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 75110465 | 75111832 | 75110465 | ID=Msa1076600;Name=Msa1076600 |
| chr7_2 | mRNA | 75110465 | 75111832 | 75110465 | ID=Msa1076600-mRNA-1;Parent=Msa1076600;Name=Msa1076600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=190|1|1|1|1|1|2|527|179 |
| chr7_2 | exon | 75110465 | 75111295 | 75110465 | ID=Msa1076600-mRNA-1:exon:17831;Parent=Msa1076600-mRNA-1 |
| chr7_2 | exon | 75111407 | 75111832 | 75111407 | ID=Msa1076600-mRNA-1:exon:17830;Parent=Msa1076600-mRNA-1 |
| chr7_2 | five_prime_UTR | 75111643 | 75111832 | 75111643 | ID=Msa1076600-mRNA-1:five_prime_utr;Parent=Msa1076600-mRNA-1 |
| chr7_2 | CDS | 75111407 | 75111642 | 75111407 | ID=Msa1076600-mRNA-1:cds;Parent=Msa1076600-mRNA-1 |
| chr7_2 | CDS | 75110992 | 75111295 | 75110992 | ID=Msa1076600-mRNA-1:cds;Parent=Msa1076600-mRNA-1 |
| chr7_2 | three_prime_UTR | 75110465 | 75110991 | 75110465 | ID=Msa1076600-mRNA-1:three_prime_utr;Parent=Msa1076600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
