AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0575990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575990 MtrunA17_Chr8g0393281 99.365 315 2 0 1 315 1 315 0.0 654
Msa0575990 MtrunA17_Chr6g0479421 79.299 314 65 0 1 314 1 314 0.0 513
Msa0575990 MtrunA17_Chr1g0210981 77.389 314 71 0 1 314 1 314 2.57e-180 500
Msa0575990 MtrunA17_Chr6g0479411 74.522 314 80 0 1 314 28 341 4.35e-179 498
Msa0575990 MtrunA17_Chr6g0479391 77.389 314 71 0 1 314 1 314 9.14e-173 481
Msa0575990 MtrunA17_Chr1g0162071 59.554 314 123 3 1 312 1 312 5.90e-140 398
Msa0575990 MtrunA17_Chr8g0352571 40.694 317 181 3 1 312 1 315 1.94e-74 231
Msa0575990 MtrunA17_Chr3g0083901 37.898 314 192 3 1 313 1 312 3.68e-71 223
Msa0575990 MtrunA17_Chr8g0352621 38.361 305 186 2 9 312 7 310 2.61e-70 221
Msa0575990 MtrunA17_Chr3g0083921 38.585 311 189 2 6 315 5 314 5.19e-70 220
Msa0575990 MtrunA17_Chr5g0425971 37.224 317 193 6 1 314 1 314 2.84e-68 215
Msa0575990 MtrunA17_Chr8g0352591 38.019 313 180 4 1 312 1 300 3.69e-67 212
Msa0575990 MtrunA17_Chr8g0382281 36.278 317 198 3 1 315 1 315 1.13e-66 211
Msa0575990 MtrunA17_Chr8g0352611 35.873 315 200 2 1 315 1 313 9.43e-66 209
Msa0575990 MtrunA17_Chr2g0293441 36.093 302 191 2 12 312 11 311 1.02e-64 206
Msa0575990 MtrunA17_Chr6g0461141 31.250 304 195 7 16 310 9 307 2.99e-37 135
Msa0575990 MtrunA17_Chr8g0352581 29.545 308 192 6 22 312 12 311 1.09e-33 125
Msa0575990 MtrunA17_Chr3g0084011 50.725 69 34 0 6 74 5 73 5.15e-16 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0575990 AT1G68090.1 55.873 315 138 1 1 314 1 315 1.13e-129 372
Msa0575990 AT1G68090.2 52.800 250 117 1 1 249 1 250 2.80e-92 275
Msa0575990 AT1G68090.2 28.767 146 100 2 170 315 16 157 3.31e-11 62.8
Msa0575990 AT5G10230.1 39.936 313 186 2 1 312 1 312 7.35e-82 251
Msa0575990 AT5G10220.1 40.506 316 182 5 1 312 1 314 3.13e-81 249
Msa0575990 AT5G65020.1 40.635 315 182 4 1 312 1 313 1.04e-79 245
Msa0575990 AT1G35720.1 38.608 316 191 3 1 314 1 315 3.84e-73 228
Msa0575990 AT5G65020.2 39.655 290 170 4 26 312 11 298 7.40e-69 217
Msa0575990 AT5G65020.2 30.714 140 94 1 173 312 3 139 4.20e-13 68.9
Msa0575990 AT5G12380.1 37.143 315 191 4 1 312 1 311 1.34e-67 214
Msa0575990 AT2G38760.1 34.483 319 201 3 1 312 1 318 2.83e-62 201
Msa0575990 AT2G38750.1 29.582 311 186 9 26 314 19 318 1.31e-29 115
Msa0575990 AT2G38750.2 29.582 311 186 9 26 314 2 301 1.39e-29 114

Find 95 sgRNAs with CRISPR-Local

Find 302 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTTATCTTCTGAGCTTTC+TGG 0.083778 4_1:-80029380 Msa0575990:CDS
TATATAGTATAATATAATTT+TGG 0.090554 4_1:-80029823 Msa0575990:five_prime_UTR
CATCCCAGCTCCAATATTTA+AGG 0.208022 4_1:-80029229 Msa0575990:CDS
TATATTATACTATATATTAT+TGG 0.214575 4_1:+80029830 None:intergenic
AGACGGTCAGAGTCTGTTTA+AGG 0.250402 4_1:+80029297 None:intergenic
TTCTGAGCTTTCTGGCAAAT+TGG 0.253655 4_1:-80029372 Msa0575990:CDS
TGGAGAATGCTATTCTTCTT+TGG 0.262983 4_1:-80029352 Msa0575990:CDS
CTATGGTCATTCATTGAAAA+AGG 0.272511 4_1:-80028870 Msa0575990:intron
CTTTGATTTCCGTCTGCATT+TGG 0.310705 4_1:-80029764 Msa0575990:five_prime_UTR
ACCTTTGCGAAATACTTTGC+AGG 0.321834 4_1:+80028675 None:intergenic
TGCCTCTGGGGATCATAAAA+AGG 0.322450 4_1:-80029153 Msa0575990:intron
GGTAAATCTGCCTTAAATAT+TGG 0.325628 4_1:+80029219 None:intergenic
CGAAGTGTTAGTTGGCGATT+TGG 0.327963 4_1:-80029857 Msa0575990:five_prime_UTR
TAAAGCAGGTGAGAAGAAAC+TGG 0.345893 4_1:-80028978 Msa0575990:CDS
AAGTTGCATAGCATCGTCTC+TGG 0.368282 4_1:+80029694 None:intergenic
TATTAACCTCGGGGCCTTCA+TGG 0.371117 4_1:+80029035 None:intergenic
CTCCACACAAAACATGCATT+TGG 0.381699 4_1:+80027965 None:intergenic
TTTCAATGAATGACCATAGT+TGG 0.381777 4_1:+80028874 None:intergenic
AGGCATTTCTTTCAATATCA+TGG 0.384021 4_1:+80029171 None:intergenic
GATAAACGCCGAATCTAGTA+TGG 0.386843 4_1:+80029198 None:intergenic
GCCATTTCTCTATTAACCTC+GGG 0.416575 4_1:+80029025 None:intergenic
ATGATCGCATCGCGGGTGGC+AGG 0.418114 4_1:+80029320 None:intergenic
GCAATAAAGAATGAAACATC+AGG 0.421465 4_1:-80028744 Msa0575990:CDS
CATTTGGACTGCTACTGGTT+GGG 0.425583 4_1:+80027981 None:intergenic
ACGTAAGGCAATGAAAGGTC+TGG 0.431308 4_1:-80028168 Msa0575990:CDS
CAGATTTACCATACTAGATT+CGG 0.431656 4_1:-80029206 Msa0575990:CDS
AATATCAATAAAGAAAAGAT+TGG 0.443691 4_1:+80027907 None:intergenic
CCGATGACACGAAACTTATG+AGG 0.444443 4_1:-80028142 Msa0575990:CDS
TTTGAGAAGATCTTCAGAAT+AGG 0.444725 4_1:+80029403 None:intergenic
TAGCTCTGTATTCTTGTTGG+AGG 0.449864 4_1:+80029426 None:intergenic
TCTGCCTTAAATATTGGAGC+TGG 0.456137 4_1:+80029225 None:intergenic
ACATGCATTTGGACTGCTAC+TGG 0.459471 4_1:+80027976 None:intergenic
CCAACTGTGCGGCACTCCGT+TGG 0.459909 4_1:+80028921 None:intergenic
GCAGTTCACTCGGAAACATC+TGG 0.461957 4_1:-80028038 Msa0575990:CDS
CCCCGAGGTTAATAGAGAAA+TGG 0.469091 4_1:-80029026 Msa0575990:CDS
CATCTCATCGAAGTGTTAGT+TGG 0.469886 4_1:-80029865 Msa0575990:five_prime_UTR
CGTAAGGCAATGAAAGGTCT+GGG 0.471119 4_1:-80028167 Msa0575990:CDS
CGGAAACATCTGGCCACTAC+AGG 0.473093 4_1:-80028028 Msa0575990:CDS
GCCAAGGTTCTTTATAAAGC+AGG 0.481064 4_1:-80028992 Msa0575990:CDS
AGGTAGCTCTGTATTCTTGT+TGG 0.495794 4_1:+80029423 None:intergenic
AGCCATTTCTCTATTAACCT+CGG 0.502469 4_1:+80029024 None:intergenic
GATATTGAAAGAAATGCCTC+TGG 0.502650 4_1:-80029167 Msa0575990:CDS
CTTAAATATTGGAGCTGGGA+TGG 0.506218 4_1:+80029230 None:intergenic
TCTGTATTCTTGTTGGAGGT+AGG 0.508043 4_1:+80029430 None:intergenic
CAACTTCACCGTGCTTTCAA+AGG 0.508493 4_1:-80029677 Msa0575990:intron
CCTCATAAGTTTCGTGTCAT+CGG 0.515712 4_1:+80028142 None:intergenic
CCAACGGAGTGCCGCACAGT+TGG 0.517490 4_1:-80028921 Msa0575990:CDS
ACCTCGGGGCCTTCATGGCG+TGG 0.520754 4_1:+80029040 None:intergenic
AGCATATTGCACATATATGA+TGG 0.521402 4_1:-80027815 Msa0575990:three_prime_UTR
TTTAAGGATGATCGCATCGC+GGG 0.525060 4_1:+80029313 None:intergenic
ATGTAGATCTATCTCACTCC+TGG 0.533758 4_1:+80028109 None:intergenic
TGTATGTATCTATATATGCA+TGG 0.542822 4_1:-80027780 Msa0575990:three_prime_UTR
GCATTTGGACTGCTACTGGT+TGG 0.546867 4_1:+80027980 None:intergenic
GAAATACTTTGCAGGACTCT+CGG 0.548694 4_1:+80028683 None:intergenic
CTGCCTTAAATATTGGAGCT+GGG 0.548696 4_1:+80029226 None:intergenic
ACCTGCTTTATAAAGAACCT+TGG 0.551796 4_1:+80028991 None:intergenic
TCATAGAGATGCCACTCAGC+GGG 0.554538 4_1:-80029453 Msa0575990:CDS
GCTCATTTATTCAACAACAT+AGG 0.563805 4_1:+80027934 None:intergenic
ATGAATGACCATAGTTGGCA+TGG 0.568883 4_1:+80028879 None:intergenic
AAGTATATTGATCACAGCGC+TGG 0.572934 4_1:+80029478 None:intergenic
GTATGTATCTATATATGCAT+GGG 0.577181 4_1:-80027779 Msa0575990:three_prime_UTR
TGATCGCATCGCGGGTGGCA+GGG 0.577286 4_1:+80029321 None:intergenic
TTGTGCAAATATTCAGCCAA+CGG 0.579000 4_1:-80028937 Msa0575990:CDS
AGAGAAGAAAAGCCCTGTAG+TGG 0.580742 4_1:+80028015 None:intergenic
TTGCAGGACTCTCGGCACAT+TGG 0.581738 4_1:+80028691 None:intergenic
GTAAGCACGCCACGCCATGA+AGG 0.585985 4_1:-80029049 Msa0575990:CDS
AGTTGCATAGCATCGTCTCT+GGG 0.589297 4_1:+80029695 None:intergenic
AGAAGGAACCTTTGAAAGCA+CGG 0.590481 4_1:+80029669 None:intergenic
GTCCTACGTAAGGCAATGAA+AGG 0.594808 4_1:-80028173 Msa0575990:CDS
ATATTGAAAGAAATGCCTCT+GGG 0.595614 4_1:-80029166 Msa0575990:CDS
GCTGAATGATGCAGTTCACT+CGG 0.599454 4_1:-80028048 Msa0575990:CDS
ATGTATGCAGGTCCTACGTA+AGG 0.602486 4_1:-80028183 Msa0575990:intron
AAGGATGATCGCATCGCGGG+TGG 0.610475 4_1:+80029316 None:intergenic
TTCTTCGATCCAAATGCAGA+CGG 0.613358 4_1:+80029755 None:intergenic
GGAAACATCTGGCCACTACA+GGG 0.629881 4_1:-80028027 Msa0575990:CDS
GTTTAAGGATGATCGCATCG+CGG 0.634734 4_1:+80029312 None:intergenic
TCCTGCAAAGTATTTCGCAA+AGG 0.635917 4_1:-80028676 Msa0575990:intron
CAATAAAGAATGAAACATCA+GGG 0.640821 4_1:-80028743 Msa0575990:CDS
TTGGAGGTAGGCCCGCTGAG+TGG 0.643177 4_1:+80029442 None:intergenic
CAAATGCAGACGGAAATCAA+AGG 0.646428 4_1:+80029765 None:intergenic
TTGCATAGCATCGTCTCTGG+GGG 0.646475 4_1:+80029697 None:intergenic
CCATTTCTCTATTAACCTCG+GGG 0.647560 4_1:+80029026 None:intergenic
TCGAGAACATATAACTTCAG+TGG 0.648591 4_1:+80029256 None:intergenic
AAAGCAGGTGAGAAGAAACT+GGG 0.649440 4_1:-80028977 Msa0575990:CDS
AATGGCTGAGAACGATGCCA+AGG 0.650141 4_1:-80029008 Msa0575990:CDS
GTTGCATAGCATCGTCTCTG+GGG 0.658534 4_1:+80029696 None:intergenic
TTATGAGGGTGATTGTAACC+AGG 0.659039 4_1:-80028127 Msa0575990:CDS
AATATGTACACAAACTCACT+CGG 0.659493 4_1:-80027859 Msa0575990:three_prime_UTR
CGATGACACGAAACTTATGA+GGG 0.666861 4_1:-80028141 Msa0575990:CDS
CTCATAGAGATGCCACTCAG+CGG 0.668547 4_1:-80029454 Msa0575990:CDS
GACCTTTCATTGCCTTACGT+AGG 0.695083 4_1:+80028171 None:intergenic
GCCACGCCATGAAGGCCCCG+AGG 0.698151 4_1:-80029041 Msa0575990:CDS
TATTGAAAGAAATGCCTCTG+GGG 0.698736 4_1:-80029165 Msa0575990:CDS
GTAAGGCAATGAAAGGTCTG+GGG 0.711244 4_1:-80028166 Msa0575990:CDS
ATTTATGGCAGCCAACTGTG+CGG 0.736814 4_1:+80028910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ACTTATTGTTAAAATAATTT+TGG - chr4_1:80029112-80029131 Msa0575990:intron 10.0%
!!! CTTATTGTTAAAATAATTTT+GGG - chr4_1:80029113-80029132 Msa0575990:intron 10.0%
!!! ACTTATTGTTAAAATAATTT+TGG - chr4_1:80029112-80029131 Msa0575990:intron 10.0%
!!! CTTATTGTTAAAATAATTTT+GGG - chr4_1:80029113-80029132 Msa0575990:intron 10.0%
!! AAATAAATACAAAAAAGCTT+AGG + chr4_1:80029254-80029273 None:intergenic 15.0%
!! AATATCAATAAAGAAAAGAT+TGG + chr4_1:80029742-80029761 None:intergenic 15.0%
!! AAATAAATACAAAAAAGCTT+AGG + chr4_1:80029254-80029273 None:intergenic 15.0%
!! AATATCAATAAAGAAAAGAT+TGG + chr4_1:80029742-80029761 None:intergenic 15.0%
!! GAATTAGAATTAGAATTAGA+AGG + chr4_1:80028107-80028126 None:intergenic 20.0%
!!! TTAAGGGTATAAATTTAAAG+TGG + chr4_1:80028820-80028839 None:intergenic 20.0%
!!! TTAAAATAATTTTGGGAAGA+AGG - chr4_1:80029120-80029139 Msa0575990:intron 20.0%
!! GAATTAGAATTAGAATTAGA+AGG + chr4_1:80028107-80028126 None:intergenic 20.0%
!!! TTAAGGGTATAAATTTAAAG+TGG + chr4_1:80028820-80028839 None:intergenic 20.0%
!!! TTAAAATAATTTTGGGAAGA+AGG - chr4_1:80029120-80029139 Msa0575990:intron 20.0%
! TTACATATGCAAGTAAAATC+TGG + chr4_1:80028581-80028600 None:intergenic 25.0%
! CAATAAAGAATGAAACATCA+GGG - chr4_1:80028903-80028922 Msa0575990:CDS 25.0%
! AAGGTAAAAATAATGTAGGA+GGG + chr4_1:80029004-80029023 None:intergenic 25.0%
! CATCAAGGTAAAAATAATGT+AGG + chr4_1:80029008-80029027 None:intergenic 25.0%
!!! CTACATTATTTTTACCTTGA+TGG - chr4_1:80029006-80029025 Msa0575990:CDS 25.0%
!!! CTGGCAATAAAATTTTTAAG+AGG + chr4_1:80029404-80029423 None:intergenic 25.0%
!! CTCTTAAAAATTTTATTGCC+AGG - chr4_1:80029402-80029421 Msa0575990:CDS 25.0%
!! TTTTATTGCCAGGATAATTA+AGG - chr4_1:80029412-80029431 Msa0575990:CDS 25.0%
! TGTATGTATCTATATATGCA+TGG - chr4_1:80029866-80029885 Msa0575990:five_prime_UTR 25.0%
! GTATGTATCTATATATGCAT+GGG - chr4_1:80029867-80029886 Msa0575990:five_prime_UTR 25.0%
! TTACATATGCAAGTAAAATC+TGG + chr4_1:80028581-80028600 None:intergenic 25.0%
! CAATAAAGAATGAAACATCA+GGG - chr4_1:80028903-80028922 Msa0575990:CDS 25.0%
! AAGGTAAAAATAATGTAGGA+GGG + chr4_1:80029004-80029023 None:intergenic 25.0%
! CATCAAGGTAAAAATAATGT+AGG + chr4_1:80029008-80029027 None:intergenic 25.0%
!!! CTACATTATTTTTACCTTGA+TGG - chr4_1:80029006-80029025 Msa0575990:CDS 25.0%
!!! CTGGCAATAAAATTTTTAAG+AGG + chr4_1:80029404-80029423 None:intergenic 25.0%
!! CTCTTAAAAATTTTATTGCC+AGG - chr4_1:80029402-80029421 Msa0575990:CDS 25.0%
!! TTTTATTGCCAGGATAATTA+AGG - chr4_1:80029412-80029431 Msa0575990:CDS 25.0%
! TGTATGTATCTATATATGCA+TGG - chr4_1:80029866-80029885 Msa0575990:five_prime_UTR 25.0%
! GTATGTATCTATATATGCAT+GGG - chr4_1:80029867-80029886 Msa0575990:five_prime_UTR 25.0%
GAAGAAATGAAAACCAAAGA+AGG + chr4_1:80027997-80028016 None:intergenic 30.0%
AGAATTAGAATTAGAAGGCA+TGG + chr4_1:80028102-80028121 None:intergenic 30.0%
! TCATTCTGTCATCTTTTATC+AGG - chr4_1:80028131-80028150 Msa0575990:CDS 30.0%
! TGTCATCTTTTATCAGGATT+TGG - chr4_1:80028137-80028156 Msa0575990:CDS 30.0%
! GTCATCTTTTATCAGGATTT+GGG - chr4_1:80028138-80028157 Msa0575990:CDS 30.0%
TTTGAGAAGATCTTCAGAAT+AGG + chr4_1:80028246-80028265 None:intergenic 30.0%
GGTAAATCTGCCTTAAATAT+TGG + chr4_1:80028430-80028449 None:intergenic 30.0%
CAGATTTACCATACTAGATT+CGG - chr4_1:80028440-80028459 Msa0575990:intron 30.0%
AGGCATTTCTTTCAATATCA+TGG + chr4_1:80028478-80028497 None:intergenic 30.0%
ATATTGAAAGAAATGCCTCT+GGG - chr4_1:80028480-80028499 Msa0575990:intron 30.0%
GGCATGGTAAAAATGATTTA+TGG + chr4_1:80028754-80028773 None:intergenic 30.0%
TTTCAATGAATGACCATAGT+TGG + chr4_1:80028775-80028794 None:intergenic 30.0%
CTATGGTCATTCATTGAAAA+AGG - chr4_1:80028776-80028795 Msa0575990:intron 30.0%
AAGACTATGTCTATGGTTAA+GGG + chr4_1:80028836-80028855 None:intergenic 30.0%
GCAATAAAGAATGAAACATC+AGG - chr4_1:80028902-80028921 Msa0575990:CDS 30.0%
CAAGGTAAAAATAATGTAGG+AGG + chr4_1:80029005-80029024 None:intergenic 30.0%
! AATTGTATTAGTCTCCATCA+AGG + chr4_1:80029023-80029042 None:intergenic 30.0%
AGTGTTAACGCTAAATTATG+TGG - chr4_1:80029349-80029368 Msa0575990:CDS 30.0%
!!! TTGGTTGTTTTTAAGGATAG+AGG - chr4_1:80029375-80029394 Msa0575990:CDS 30.0%
!!! TGGTTGTTTTTAAGGATAGA+GGG - chr4_1:80029376-80029395 Msa0575990:CDS 30.0%
GCTCATTTATTCAACAACAT+AGG + chr4_1:80029715-80029734 None:intergenic 30.0%
AATATGTACACAAACTCACT+CGG - chr4_1:80029787-80029806 Msa0575990:five_prime_UTR 30.0%
AGCATATTGCACATATATGA+TGG - chr4_1:80029831-80029850 Msa0575990:five_prime_UTR 30.0%
GAAGAAATGAAAACCAAAGA+AGG + chr4_1:80027997-80028016 None:intergenic 30.0%
AGAATTAGAATTAGAAGGCA+TGG + chr4_1:80028102-80028121 None:intergenic 30.0%
! TCATTCTGTCATCTTTTATC+AGG - chr4_1:80028131-80028150 Msa0575990:CDS 30.0%
! TGTCATCTTTTATCAGGATT+TGG - chr4_1:80028137-80028156 Msa0575990:CDS 30.0%
! GTCATCTTTTATCAGGATTT+GGG - chr4_1:80028138-80028157 Msa0575990:CDS 30.0%
TTTGAGAAGATCTTCAGAAT+AGG + chr4_1:80028246-80028265 None:intergenic 30.0%
GGTAAATCTGCCTTAAATAT+TGG + chr4_1:80028430-80028449 None:intergenic 30.0%
CAGATTTACCATACTAGATT+CGG - chr4_1:80028440-80028459 Msa0575990:intron 30.0%
AGGCATTTCTTTCAATATCA+TGG + chr4_1:80028478-80028497 None:intergenic 30.0%
ATATTGAAAGAAATGCCTCT+GGG - chr4_1:80028480-80028499 Msa0575990:intron 30.0%
GGCATGGTAAAAATGATTTA+TGG + chr4_1:80028754-80028773 None:intergenic 30.0%
TTTCAATGAATGACCATAGT+TGG + chr4_1:80028775-80028794 None:intergenic 30.0%
CTATGGTCATTCATTGAAAA+AGG - chr4_1:80028776-80028795 Msa0575990:intron 30.0%
AAGACTATGTCTATGGTTAA+GGG + chr4_1:80028836-80028855 None:intergenic 30.0%
GCAATAAAGAATGAAACATC+AGG - chr4_1:80028902-80028921 Msa0575990:CDS 30.0%
CAAGGTAAAAATAATGTAGG+AGG + chr4_1:80029005-80029024 None:intergenic 30.0%
! AATTGTATTAGTCTCCATCA+AGG + chr4_1:80029023-80029042 None:intergenic 30.0%
AGTGTTAACGCTAAATTATG+TGG - chr4_1:80029349-80029368 Msa0575990:CDS 30.0%
!!! TTGGTTGTTTTTAAGGATAG+AGG - chr4_1:80029375-80029394 Msa0575990:CDS 30.0%
!!! TGGTTGTTTTTAAGGATAGA+GGG - chr4_1:80029376-80029395 Msa0575990:CDS 30.0%
GCTCATTTATTCAACAACAT+AGG + chr4_1:80029715-80029734 None:intergenic 30.0%
AATATGTACACAAACTCACT+CGG - chr4_1:80029787-80029806 Msa0575990:five_prime_UTR 30.0%
AGCATATTGCACATATATGA+TGG - chr4_1:80029831-80029850 Msa0575990:five_prime_UTR 30.0%
TGGAGAATGCTATTCTTCTT+TGG - chr4_1:80028294-80028313 Msa0575990:intron 35.0%
!! AGCTTCAAGATTTTTGGAGA+CGG + chr4_1:80028369-80028388 None:intergenic 35.0%
! AGTGGTAGCTTCAAGATTTT+TGG + chr4_1:80028375-80028394 None:intergenic 35.0%
TCGAGAACATATAACTTCAG+TGG + chr4_1:80028393-80028412 None:intergenic 35.0%
GATATTGAAAGAAATGCCTC+TGG - chr4_1:80028479-80028498 Msa0575990:intron 35.0%
TATTGAAAGAAATGCCTCTG+GGG - chr4_1:80028481-80028500 Msa0575990:intron 35.0%
AGCCATTTCTCTATTAACCT+CGG + chr4_1:80028625-80028644 None:intergenic 35.0%
ACCTGCTTTATAAAGAACCT+TGG + chr4_1:80028658-80028677 None:intergenic 35.0%
TTGTGCAAATATTCAGCCAA+CGG - chr4_1:80028709-80028728 Msa0575990:CDS 35.0%
! CATTTTTACCATGCCAACTA+TGG - chr4_1:80028759-80028778 Msa0575990:intron 35.0%
GAAGACTATGTCTATGGTTA+AGG + chr4_1:80028837-80028856 None:intergenic 35.0%
ATGAATTCAGCTTGGATAAG+TGG + chr4_1:80028879-80028898 None:intergenic 35.0%
TTATCCAAGCTGAATTCATC+AGG - chr4_1:80028880-80028899 Msa0575990:CDS 35.0%
!! AACTTGGTTGCTTTGAAACT+AGG - chr4_1:80029146-80029165 Msa0575990:intron 35.0%
! TCCTTTTCTCACTGAAAGAA+AGG - chr4_1:80029314-80029333 Msa0575990:CDS 35.0%
ACCTTTCTTTCAGTGAGAAA+AGG + chr4_1:80029318-80029337 None:intergenic 35.0%
TTTCTCACTGAAAGAAAGGT+TGG - chr4_1:80029318-80029337 Msa0575990:CDS 35.0%
ACGCTAAATTATGTGGTTGT+TGG - chr4_1:80029356-80029375 Msa0575990:CDS 35.0%
!!! GTGGTTGTTGGTTGTTTTTA+AGG - chr4_1:80029368-80029387 Msa0575990:CDS 35.0%
GCTTATCTCCTTAATTATCC+TGG + chr4_1:80029423-80029442 None:intergenic 35.0%
!! GCTTTTCTTCTCTCACTTTT+AGG - chr4_1:80029641-80029660 Msa0575990:intron 35.0%
TGGAGAATGCTATTCTTCTT+TGG - chr4_1:80028294-80028313 Msa0575990:intron 35.0%
!! AGCTTCAAGATTTTTGGAGA+CGG + chr4_1:80028369-80028388 None:intergenic 35.0%
! AGTGGTAGCTTCAAGATTTT+TGG + chr4_1:80028375-80028394 None:intergenic 35.0%
TCGAGAACATATAACTTCAG+TGG + chr4_1:80028393-80028412 None:intergenic 35.0%
GATATTGAAAGAAATGCCTC+TGG - chr4_1:80028479-80028498 Msa0575990:intron 35.0%
TATTGAAAGAAATGCCTCTG+GGG - chr4_1:80028481-80028500 Msa0575990:intron 35.0%
AGCCATTTCTCTATTAACCT+CGG + chr4_1:80028625-80028644 None:intergenic 35.0%
ACCTGCTTTATAAAGAACCT+TGG + chr4_1:80028658-80028677 None:intergenic 35.0%
TTGTGCAAATATTCAGCCAA+CGG - chr4_1:80028709-80028728 Msa0575990:CDS 35.0%
! CATTTTTACCATGCCAACTA+TGG - chr4_1:80028759-80028778 Msa0575990:intron 35.0%
GAAGACTATGTCTATGGTTA+AGG + chr4_1:80028837-80028856 None:intergenic 35.0%
ATGAATTCAGCTTGGATAAG+TGG + chr4_1:80028879-80028898 None:intergenic 35.0%
TTATCCAAGCTGAATTCATC+AGG - chr4_1:80028880-80028899 Msa0575990:CDS 35.0%
!! AACTTGGTTGCTTTGAAACT+AGG - chr4_1:80029146-80029165 Msa0575990:intron 35.0%
! TCCTTTTCTCACTGAAAGAA+AGG - chr4_1:80029314-80029333 Msa0575990:CDS 35.0%
ACCTTTCTTTCAGTGAGAAA+AGG + chr4_1:80029318-80029337 None:intergenic 35.0%
TTTCTCACTGAAAGAAAGGT+TGG - chr4_1:80029318-80029337 Msa0575990:CDS 35.0%
ACGCTAAATTATGTGGTTGT+TGG - chr4_1:80029356-80029375 Msa0575990:CDS 35.0%
!!! GTGGTTGTTGGTTGTTTTTA+AGG - chr4_1:80029368-80029387 Msa0575990:CDS 35.0%
GCTTATCTCCTTAATTATCC+TGG + chr4_1:80029423-80029442 None:intergenic 35.0%
!! GCTTTTCTTCTCTCACTTTT+AGG - chr4_1:80029641-80029660 Msa0575990:intron 35.0%
! CATCTCATCGAAGTGTTAGT+TGG - chr4_1:80027781-80027800 Msa0575990:three_prime_UTR 40.0%
CAAATGCAGACGGAAATCAA+AGG + chr4_1:80027884-80027903 None:intergenic 40.0%
! CTTTGATTTCCGTCTGCATT+TGG - chr4_1:80027882-80027901 Msa0575990:three_prime_UTR 40.0%
TTCTTCGATCCAAATGCAGA+CGG + chr4_1:80027894-80027913 None:intergenic 40.0%
! AGAAGGAACCTTTGAAAGCA+CGG + chr4_1:80027980-80027999 None:intergenic 40.0%
GCTTTCAAAGGTTCCTTCTT+TGG - chr4_1:80027981-80028000 Msa0575990:exon 40.0%
AAGTATATTGATCACAGCGC+TGG + chr4_1:80028171-80028190 None:intergenic 40.0%
TCTGTATTCTTGTTGGAGGT+AGG + chr4_1:80028219-80028238 None:intergenic 40.0%
! TAGCTCTGTATTCTTGTTGG+AGG + chr4_1:80028223-80028242 None:intergenic 40.0%
! AGGTAGCTCTGTATTCTTGT+TGG + chr4_1:80028226-80028245 None:intergenic 40.0%
! TTCTGAGCTTTCTGGCAAAT+TGG - chr4_1:80028274-80028293 Msa0575990:intron 40.0%
CTTAAATATTGGAGCTGGGA+TGG + chr4_1:80028419-80028438 None:intergenic 40.0%
CATCCCAGCTCCAATATTTA+AGG - chr4_1:80028417-80028436 Msa0575990:intron 40.0%
CTGCCTTAAATATTGGAGCT+GGG + chr4_1:80028423-80028442 None:intergenic 40.0%
TCTGCCTTAAATATTGGAGC+TGG + chr4_1:80028424-80028443 None:intergenic 40.0%
GATAAACGCCGAATCTAGTA+TGG + chr4_1:80028451-80028470 None:intergenic 40.0%
! TACCTTTTTATGATCCCCAG+AGG + chr4_1:80028498-80028517 None:intergenic 40.0%
CCATTTCTCTATTAACCTCG+GGG + chr4_1:80028623-80028642 None:intergenic 40.0%
GCCATTTCTCTATTAACCTC+GGG + chr4_1:80028624-80028643 None:intergenic 40.0%
GCCAAGGTTCTTTATAAAGC+AGG - chr4_1:80028654-80028673 Msa0575990:intron 40.0%
TAAAGCAGGTGAGAAGAAAC+TGG - chr4_1:80028668-80028687 Msa0575990:intron 40.0%
AAAGCAGGTGAGAAGAAACT+GGG - chr4_1:80028669-80028688 Msa0575990:intron 40.0%
ATGAATGACCATAGTTGGCA+TGG + chr4_1:80028770-80028789 None:intergenic 40.0%
GTGAGAGAAGACTATGTCTA+TGG + chr4_1:80028843-80028862 None:intergenic 40.0%
AATTCAGCTTGGATAAGTGG+CGG + chr4_1:80028876-80028895 None:intergenic 40.0%
ATTGCCTGATGAATTCAGCT+TGG + chr4_1:80028887-80028906 None:intergenic 40.0%
GAAATACTTTGCAGGACTCT+CGG + chr4_1:80028966-80028985 None:intergenic 40.0%
! TCCTGCAAAGTATTTCGCAA+AGG - chr4_1:80028970-80028989 Msa0575990:CDS 40.0%
ACCTTTGCGAAATACTTTGC+AGG + chr4_1:80028974-80028993 None:intergenic 40.0%
TTATCTGTACAACAACGTGC+TGG - chr4_1:80029274-80029293 Msa0575990:CDS 40.0%
CCTCATAAGTTTCGTGTCAT+CGG + chr4_1:80029507-80029526 None:intergenic 40.0%
CGATGACACGAAACTTATGA+GGG - chr4_1:80029505-80029524 Msa0575990:intron 40.0%
TTATGAGGGTGATTGTAACC+AGG - chr4_1:80029519-80029538 Msa0575990:intron 40.0%
ATGTAGATCTATCTCACTCC+TGG + chr4_1:80029540-80029559 None:intergenic 40.0%
! GTCCAAATGCATGTTTTGTG+TGG - chr4_1:80029679-80029698 Msa0575990:CDS 40.0%
CTCCACACAAAACATGCATT+TGG + chr4_1:80029684-80029703 None:intergenic 40.0%
! CATCTCATCGAAGTGTTAGT+TGG - chr4_1:80027781-80027800 Msa0575990:three_prime_UTR 40.0%
CAAATGCAGACGGAAATCAA+AGG + chr4_1:80027884-80027903 None:intergenic 40.0%
! CTTTGATTTCCGTCTGCATT+TGG - chr4_1:80027882-80027901 Msa0575990:three_prime_UTR 40.0%
TTCTTCGATCCAAATGCAGA+CGG + chr4_1:80027894-80027913 None:intergenic 40.0%
! AGAAGGAACCTTTGAAAGCA+CGG + chr4_1:80027980-80027999 None:intergenic 40.0%
GCTTTCAAAGGTTCCTTCTT+TGG - chr4_1:80027981-80028000 Msa0575990:exon 40.0%
AAGTATATTGATCACAGCGC+TGG + chr4_1:80028171-80028190 None:intergenic 40.0%
TCTGTATTCTTGTTGGAGGT+AGG + chr4_1:80028219-80028238 None:intergenic 40.0%
! TAGCTCTGTATTCTTGTTGG+AGG + chr4_1:80028223-80028242 None:intergenic 40.0%
! AGGTAGCTCTGTATTCTTGT+TGG + chr4_1:80028226-80028245 None:intergenic 40.0%
! TTCTGAGCTTTCTGGCAAAT+TGG - chr4_1:80028274-80028293 Msa0575990:intron 40.0%
CTTAAATATTGGAGCTGGGA+TGG + chr4_1:80028419-80028438 None:intergenic 40.0%
CATCCCAGCTCCAATATTTA+AGG - chr4_1:80028417-80028436 Msa0575990:intron 40.0%
CTGCCTTAAATATTGGAGCT+GGG + chr4_1:80028423-80028442 None:intergenic 40.0%
TCTGCCTTAAATATTGGAGC+TGG + chr4_1:80028424-80028443 None:intergenic 40.0%
GATAAACGCCGAATCTAGTA+TGG + chr4_1:80028451-80028470 None:intergenic 40.0%
! TACCTTTTTATGATCCCCAG+AGG + chr4_1:80028498-80028517 None:intergenic 40.0%
CCATTTCTCTATTAACCTCG+GGG + chr4_1:80028623-80028642 None:intergenic 40.0%
GCCATTTCTCTATTAACCTC+GGG + chr4_1:80028624-80028643 None:intergenic 40.0%
GCCAAGGTTCTTTATAAAGC+AGG - chr4_1:80028654-80028673 Msa0575990:intron 40.0%
TAAAGCAGGTGAGAAGAAAC+TGG - chr4_1:80028668-80028687 Msa0575990:intron 40.0%
AAAGCAGGTGAGAAGAAACT+GGG - chr4_1:80028669-80028688 Msa0575990:intron 40.0%
ATGAATGACCATAGTTGGCA+TGG + chr4_1:80028770-80028789 None:intergenic 40.0%
GTGAGAGAAGACTATGTCTA+TGG + chr4_1:80028843-80028862 None:intergenic 40.0%
AATTCAGCTTGGATAAGTGG+CGG + chr4_1:80028876-80028895 None:intergenic 40.0%
ATTGCCTGATGAATTCAGCT+TGG + chr4_1:80028887-80028906 None:intergenic 40.0%
GAAATACTTTGCAGGACTCT+CGG + chr4_1:80028966-80028985 None:intergenic 40.0%
! TCCTGCAAAGTATTTCGCAA+AGG - chr4_1:80028970-80028989 Msa0575990:CDS 40.0%
ACCTTTGCGAAATACTTTGC+AGG + chr4_1:80028974-80028993 None:intergenic 40.0%
TTATCTGTACAACAACGTGC+TGG - chr4_1:80029274-80029293 Msa0575990:CDS 40.0%
CCTCATAAGTTTCGTGTCAT+CGG + chr4_1:80029507-80029526 None:intergenic 40.0%
CGATGACACGAAACTTATGA+GGG - chr4_1:80029505-80029524 Msa0575990:intron 40.0%
TTATGAGGGTGATTGTAACC+AGG - chr4_1:80029519-80029538 Msa0575990:intron 40.0%
ATGTAGATCTATCTCACTCC+TGG + chr4_1:80029540-80029559 None:intergenic 40.0%
! GTCCAAATGCATGTTTTGTG+TGG - chr4_1:80029679-80029698 Msa0575990:CDS 40.0%
CTCCACACAAAACATGCATT+TGG + chr4_1:80029684-80029703 None:intergenic 40.0%
! CGAAGTGTTAGTTGGCGATT+TGG - chr4_1:80027789-80027808 Msa0575990:three_prime_UTR 45.0%
! AGGAATAGGGGGTACATTCA+CGG + chr4_1:80027925-80027944 None:intergenic 45.0%
AGTTGCATAGCATCGTCTCT+GGG + chr4_1:80027954-80027973 None:intergenic 45.0%
AAGTTGCATAGCATCGTCTC+TGG + chr4_1:80027955-80027974 None:intergenic 45.0%
CAACTTCACCGTGCTTTCAA+AGG - chr4_1:80027969-80027988 Msa0575990:three_prime_UTR 45.0%
CGCTTATCTTCTGAGCTTTC+TGG - chr4_1:80028266-80028285 Msa0575990:intron 45.0%
TTTAAGGATGATCGCATCGC+GGG + chr4_1:80028336-80028355 None:intergenic 45.0%
GTTTAAGGATGATCGCATCG+CGG + chr4_1:80028337-80028356 None:intergenic 45.0%
AGACGGTCAGAGTCTGTTTA+AGG + chr4_1:80028352-80028371 None:intergenic 45.0%
! TGCCTCTGGGGATCATAAAA+AGG - chr4_1:80028493-80028512 Msa0575990:intron 45.0%
CCCCGAGGTTAATAGAGAAA+TGG - chr4_1:80028620-80028639 Msa0575990:intron 45.0%
ATTTATGGCAGCCAACTGTG+CGG + chr4_1:80028739-80028758 None:intergenic 45.0%
TTTGGGAAGAAGGAGCAACT+TGG - chr4_1:80029130-80029149 Msa0575990:intron 45.0%
ACGTTTGCGACTATGTATGC+AGG - chr4_1:80029451-80029470 Msa0575990:CDS 45.0%
ATGTATGCAGGTCCTACGTA+AGG - chr4_1:80029463-80029482 Msa0575990:CDS 45.0%
GTCCTACGTAAGGCAATGAA+AGG - chr4_1:80029473-80029492 Msa0575990:CDS 45.0%
GACCTTTCATTGCCTTACGT+AGG + chr4_1:80029478-80029497 None:intergenic 45.0%
ACGTAAGGCAATGAAAGGTC+TGG - chr4_1:80029478-80029497 Msa0575990:CDS 45.0%
CGTAAGGCAATGAAAGGTCT+GGG - chr4_1:80029479-80029498 Msa0575990:CDS 45.0%
GTAAGGCAATGAAAGGTCTG+GGG - chr4_1:80029480-80029499 Msa0575990:CDS 45.0%
CCGATGACACGAAACTTATG+AGG - chr4_1:80029504-80029523 Msa0575990:intron 45.0%
GCTGAATGATGCAGTTCACT+CGG - chr4_1:80029598-80029617 Msa0575990:intron 45.0%
AGAGAAGAAAAGCCCTGTAG+TGG + chr4_1:80029634-80029653 None:intergenic 45.0%
! CATTTGGACTGCTACTGGTT+GGG + chr4_1:80029668-80029687 None:intergenic 45.0%
ACATGCATTTGGACTGCTAC+TGG + chr4_1:80029673-80029692 None:intergenic 45.0%
! CGAAGTGTTAGTTGGCGATT+TGG - chr4_1:80027789-80027808 Msa0575990:three_prime_UTR 45.0%
! AGGAATAGGGGGTACATTCA+CGG + chr4_1:80027925-80027944 None:intergenic 45.0%
AGTTGCATAGCATCGTCTCT+GGG + chr4_1:80027954-80027973 None:intergenic 45.0%
AAGTTGCATAGCATCGTCTC+TGG + chr4_1:80027955-80027974 None:intergenic 45.0%
CAACTTCACCGTGCTTTCAA+AGG - chr4_1:80027969-80027988 Msa0575990:three_prime_UTR 45.0%
CGCTTATCTTCTGAGCTTTC+TGG - chr4_1:80028266-80028285 Msa0575990:intron 45.0%
TTTAAGGATGATCGCATCGC+GGG + chr4_1:80028336-80028355 None:intergenic 45.0%
GTTTAAGGATGATCGCATCG+CGG + chr4_1:80028337-80028356 None:intergenic 45.0%
AGACGGTCAGAGTCTGTTTA+AGG + chr4_1:80028352-80028371 None:intergenic 45.0%
! TGCCTCTGGGGATCATAAAA+AGG - chr4_1:80028493-80028512 Msa0575990:intron 45.0%
CCCCGAGGTTAATAGAGAAA+TGG - chr4_1:80028620-80028639 Msa0575990:intron 45.0%
ATTTATGGCAGCCAACTGTG+CGG + chr4_1:80028739-80028758 None:intergenic 45.0%
TTTGGGAAGAAGGAGCAACT+TGG - chr4_1:80029130-80029149 Msa0575990:intron 45.0%
ACGTTTGCGACTATGTATGC+AGG - chr4_1:80029451-80029470 Msa0575990:CDS 45.0%
ATGTATGCAGGTCCTACGTA+AGG - chr4_1:80029463-80029482 Msa0575990:CDS 45.0%
GTCCTACGTAAGGCAATGAA+AGG - chr4_1:80029473-80029492 Msa0575990:CDS 45.0%
GACCTTTCATTGCCTTACGT+AGG + chr4_1:80029478-80029497 None:intergenic 45.0%
ACGTAAGGCAATGAAAGGTC+TGG - chr4_1:80029478-80029497 Msa0575990:CDS 45.0%
CGTAAGGCAATGAAAGGTCT+GGG - chr4_1:80029479-80029498 Msa0575990:CDS 45.0%
GTAAGGCAATGAAAGGTCTG+GGG - chr4_1:80029480-80029499 Msa0575990:CDS 45.0%
CCGATGACACGAAACTTATG+AGG - chr4_1:80029504-80029523 Msa0575990:intron 45.0%
GCTGAATGATGCAGTTCACT+CGG - chr4_1:80029598-80029617 Msa0575990:intron 45.0%
AGAGAAGAAAAGCCCTGTAG+TGG + chr4_1:80029634-80029653 None:intergenic 45.0%
! CATTTGGACTGCTACTGGTT+GGG + chr4_1:80029668-80029687 None:intergenic 45.0%
ACATGCATTTGGACTGCTAC+TGG + chr4_1:80029673-80029692 None:intergenic 45.0%
!! TATATTATACTATATATTAT+TGG + chr4_1:80027819-80027838 None:intergenic 5.0%
!!! TATATAGTATAATATAATTT+TGG - chr4_1:80027823-80027842 Msa0575990:three_prime_UTR 5.0%
!!! ATATAGTATAATATAATTTT+GGG - chr4_1:80027824-80027843 Msa0575990:three_prime_UTR 5.0%
!! TATATTATACTATATATTAT+TGG + chr4_1:80027819-80027838 None:intergenic 5.0%
!!! TATATAGTATAATATAATTT+TGG - chr4_1:80027823-80027842 Msa0575990:three_prime_UTR 5.0%
!!! ATATAGTATAATATAATTTT+GGG - chr4_1:80027824-80027843 Msa0575990:three_prime_UTR 5.0%
TTGCATAGCATCGTCTCTGG+GGG + chr4_1:80027952-80027971 None:intergenic 50.0%
GTTGCATAGCATCGTCTCTG+GGG + chr4_1:80027953-80027972 None:intergenic 50.0%
CTCATAGAGATGCCACTCAG+CGG - chr4_1:80028192-80028211 Msa0575990:intron 50.0%
TCATAGAGATGCCACTCAGC+GGG - chr4_1:80028193-80028212 Msa0575990:intron 50.0%
TATTAACCTCGGGGCCTTCA+TGG + chr4_1:80028614-80028633 None:intergenic 50.0%
AATGGCTGAGAACGATGCCA+AGG - chr4_1:80028638-80028657 Msa0575990:intron 50.0%
GCAGTTCACTCGGAAACATC+TGG - chr4_1:80029608-80029627 Msa0575990:intron 50.0%
GGAAACATCTGGCCACTACA+GGG - chr4_1:80029619-80029638 Msa0575990:intron 50.0%
GCATTTGGACTGCTACTGGT+TGG + chr4_1:80029669-80029688 None:intergenic 50.0%
TTGCATAGCATCGTCTCTGG+GGG + chr4_1:80027952-80027971 None:intergenic 50.0%
GTTGCATAGCATCGTCTCTG+GGG + chr4_1:80027953-80027972 None:intergenic 50.0%
CTCATAGAGATGCCACTCAG+CGG - chr4_1:80028192-80028211 Msa0575990:intron 50.0%
TCATAGAGATGCCACTCAGC+GGG - chr4_1:80028193-80028212 Msa0575990:intron 50.0%
TATTAACCTCGGGGCCTTCA+TGG + chr4_1:80028614-80028633 None:intergenic 50.0%
AATGGCTGAGAACGATGCCA+AGG - chr4_1:80028638-80028657 Msa0575990:intron 50.0%
GCAGTTCACTCGGAAACATC+TGG - chr4_1:80029608-80029627 Msa0575990:intron 50.0%
GGAAACATCTGGCCACTACA+GGG - chr4_1:80029619-80029638 Msa0575990:intron 50.0%
GCATTTGGACTGCTACTGGT+TGG + chr4_1:80029669-80029688 None:intergenic 50.0%
TCTGGGGGAAGGAGGAATAG+GGG + chr4_1:80027937-80027956 None:intergenic 55.0%
! CTCTGGGGGAAGGAGGAATA+GGG + chr4_1:80027938-80027957 None:intergenic 55.0%
! TCTCTGGGGGAAGGAGGAAT+AGG + chr4_1:80027939-80027958 None:intergenic 55.0%
! ATAGCATCGTCTCTGGGGGA+AGG + chr4_1:80027948-80027967 None:intergenic 55.0%
TTGCAGGACTCTCGGCACAT+TGG + chr4_1:80028958-80028977 None:intergenic 55.0%
CGGAAACATCTGGCCACTAC+AGG - chr4_1:80029618-80029637 Msa0575990:intron 55.0%
TCTGGGGGAAGGAGGAATAG+GGG + chr4_1:80027937-80027956 None:intergenic 55.0%
! CTCTGGGGGAAGGAGGAATA+GGG + chr4_1:80027938-80027957 None:intergenic 55.0%
! TCTCTGGGGGAAGGAGGAAT+AGG + chr4_1:80027939-80027958 None:intergenic 55.0%
! ATAGCATCGTCTCTGGGGGA+AGG + chr4_1:80027948-80027967 None:intergenic 55.0%
TTGCAGGACTCTCGGCACAT+TGG + chr4_1:80028958-80028977 None:intergenic 55.0%
CGGAAACATCTGGCCACTAC+AGG - chr4_1:80029618-80029637 Msa0575990:intron 55.0%
CTGGGGGAAGGAGGAATAGG+GGG + chr4_1:80027936-80027955 None:intergenic 60.0%
AAGGATGATCGCATCGCGGG+TGG + chr4_1:80028333-80028352 None:intergenic 60.0%
GTAAGCACGCCACGCCATGA+AGG - chr4_1:80028597-80028616 Msa0575990:intron 60.0%
CTGGGGGAAGGAGGAATAGG+GGG + chr4_1:80027936-80027955 None:intergenic 60.0%
AAGGATGATCGCATCGCGGG+TGG + chr4_1:80028333-80028352 None:intergenic 60.0%
GTAAGCACGCCACGCCATGA+AGG - chr4_1:80028597-80028616 Msa0575990:intron 60.0%
! GCATCGTCTCTGGGGGAAGG+AGG + chr4_1:80027945-80027964 None:intergenic 65.0%
TTGGAGGTAGGCCCGCTGAG+TGG + chr4_1:80028207-80028226 None:intergenic 65.0%
TGATCGCATCGCGGGTGGCA+GGG + chr4_1:80028328-80028347 None:intergenic 65.0%
ATGATCGCATCGCGGGTGGC+AGG + chr4_1:80028329-80028348 None:intergenic 65.0%
CCAACTGTGCGGCACTCCGT+TGG + chr4_1:80028728-80028747 None:intergenic 65.0%
!! CCAACGGAGTGCCGCACAGT+TGG - chr4_1:80028725-80028744 Msa0575990:CDS 65.0%
! GCATCGTCTCTGGGGGAAGG+AGG + chr4_1:80027945-80027964 None:intergenic 65.0%
TTGGAGGTAGGCCCGCTGAG+TGG + chr4_1:80028207-80028226 None:intergenic 65.0%
TGATCGCATCGCGGGTGGCA+GGG + chr4_1:80028328-80028347 None:intergenic 65.0%
ATGATCGCATCGCGGGTGGC+AGG + chr4_1:80028329-80028348 None:intergenic 65.0%
CCAACTGTGCGGCACTCCGT+TGG + chr4_1:80028728-80028747 None:intergenic 65.0%
!! CCAACGGAGTGCCGCACAGT+TGG - chr4_1:80028725-80028744 Msa0575990:CDS 65.0%
ACCTCGGGGCCTTCATGGCG+TGG + chr4_1:80028609-80028628 None:intergenic 70.0%
ACCTCGGGGCCTTCATGGCG+TGG + chr4_1:80028609-80028628 None:intergenic 70.0%
GCCACGCCATGAAGGCCCCG+AGG - chr4_1:80028605-80028624 Msa0575990:intron 75.0%
GCCACGCCATGAAGGCCCCG+AGG - chr4_1:80028605-80028624 Msa0575990:intron 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 80027774 80029894 80027774 ID=Msa0575990;Name=Msa0575990
chr4_1 mRNA 80027774 80029894 80027774 ID=Msa0575990-mRNA-1;Parent=Msa0575990;Name=Msa0575990-mRNA-1;_AED=0.12;_eAED=0.12;_QI=141|1|1|1|1|1|5|218|315
chr4_1 exon 80027774 80028195 80027774 ID=Msa0575990-mRNA-1:exon:28590;Parent=Msa0575990-mRNA-1
chr4_1 exon 80028677 80028766 80028677 ID=Msa0575990-mRNA-1:exon:28589;Parent=Msa0575990-mRNA-1
chr4_1 exon 80028871 80029086 80028871 ID=Msa0575990-mRNA-1:exon:28588;Parent=Msa0575990-mRNA-1
chr4_1 exon 80029154 80029515 80029154 ID=Msa0575990-mRNA-1:exon:28587;Parent=Msa0575990-mRNA-1
chr4_1 exon 80029678 80029894 80029678 ID=Msa0575990-mRNA-1:exon:28586;Parent=Msa0575990-mRNA-1
chr4_1 five_prime_UTR 80029754 80029894 80029754 ID=Msa0575990-mRNA-1:five_prime_utr;Parent=Msa0575990-mRNA-1
chr4_1 CDS 80029678 80029753 80029678 ID=Msa0575990-mRNA-1:cds;Parent=Msa0575990-mRNA-1
chr4_1 CDS 80029154 80029515 80029154 ID=Msa0575990-mRNA-1:cds;Parent=Msa0575990-mRNA-1
chr4_1 CDS 80028871 80029086 80028871 ID=Msa0575990-mRNA-1:cds;Parent=Msa0575990-mRNA-1
chr4_1 CDS 80028677 80028766 80028677 ID=Msa0575990-mRNA-1:cds;Parent=Msa0575990-mRNA-1
chr4_1 CDS 80027992 80028195 80027992 ID=Msa0575990-mRNA-1:cds;Parent=Msa0575990-mRNA-1
chr4_1 three_prime_UTR 80027774 80027991 80027774 ID=Msa0575990-mRNA-1:three_prime_utr;Parent=Msa0575990-mRNA-1
Gene Sequence

>Msa0575990

ATGTCTACCGTGAATGTACCCCCTATTCCTCCTTCCCCCAGAGACGATGCTATGCAACTTCACCGTGCTTTCAAAGGATTTGGGTGTGACACCAGCGCTGTGATCAATATACTTGCTCATAGAGATGCCACTCAGCGGGCCTACCTCCAACAAGAATACAGAGCTACCTATTCTGAAGATCTTCTCAAACGCTTATCTTCTGAGCTTTCTGGCAAATTGGAGAATGCTATTCTTCTTTGGATGCATGACCCTGCCACCCGCGATGCGATCATCCTTAAACAGACTCTGACCGTCTCCAAAAATCTTGAAGCTACCACTGAAGTTATATGTTCTCGAACTCCATCCCAGCTCCAATATTTAAGGCAGATTTACCATACTAGATTCGGCGTTTATCTTGACCATGATATTGAAAGAAATGCCTCTGGGGATCATAAAAAGATTTTACTTGCATATGTAAGCACGCCACGCCATGAAGGCCCCGAGGTTAATAGAGAAATGGCTGAGAACGATGCCAAGGTTCTTTATAAAGCAGGTGAGAAGAAACTGGGAACTGATGAGAAAACTTTTGTGCAAATATTCAGCCAACGGAGTGCCGCACAGTTGGCTGCCATAAATCATTTTTACCATGCCAACTATGGTCATTCATTGAAAAAGGCAATAAAGAATGAAACATCAGGGAATTTCGCTCATGCACTTTTGACAATTGTCCAATGTGCCGAGAGTCCTGCAAAGTATTTCGCAAAGGTCCTACGTAAGGCAATGAAAGGTCTGGGGACCGATGACACGAAACTTATGAGGGTGATTGTAACCAGGAGTGAGATAGATCTACATTATATAAAAGCTGAATATTTAAAGAAATACAAGAAGACGCTGAATGATGCAGTTCACTCGGAAACATCTGGCCACTACAGGGCTTTTCTTCTCTCACTTTTAGGTCCCAACCAGTAG

Protein sequence

>Msa0575990

MSTVNVPPIPPSPRDDAMQLHRAFKGFGCDTSAVINILAHRDATQRAYLQQEYRATYSEDLLKRLSSELSGKLENAILLWMHDPATRDAIILKQTLTVSKNLEATTEVICSRTPSQLQYLRQIYHTRFGVYLDHDIERNASGDHKKILLAYVSTPRHEGPEVNREMAENDAKVLYKAGEKKLGTDEKTFVQIFSQRSAAQLAAINHFYHANYGHSLKKAIKNETSGNFAHALLTIVQCAESPAKYFAKVLRKAMKGLGTDDTKLMRVIVTRSEIDLHYIKAEYLKKYKKTLNDAVHSETSGHYRAFLLSLLGPNQ*