Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041540 | XP_003625866.1 | 96.505 | 372 | 13 | 0 | 1 | 372 | 1 | 372 | 0.0 | 745 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041540 | sp|O82256|COL13_ARATH | 46.006 | 363 | 148 | 9 | 14 | 369 | 7 | 328 | 5.67e-94 | 287 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041540 | G7KQZ2 | 96.505 | 372 | 13 | 0 | 1 | 372 | 1 | 372 | 0.0 | 745 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1041540 | TF | C2C2-CO-like |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010760 | Msa1041540 | 0.816658 | 4.938064e-52 | -8.615850e-47 |
| Msa0138220 | Msa1041540 | 0.813437 | 2.561287e-51 | -8.615850e-47 |
| Msa0183410 | Msa1041540 | 0.800767 | 1.235063e-48 | -8.615850e-47 |
| Msa1041540 | Msa1127160 | 0.845312 | 4.392305e-59 | -8.615850e-47 |
| Msa1041540 | Msa1166390 | 0.949289 | 1.718801e-107 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041540 | MtrunA17_Chr7g0268691 | 96.505 | 372 | 13 | 0 | 1 | 372 | 1 | 372 | 0.0 | 745 |
| Msa1041540 | MtrunA17_Chr1g0150471 | 28.169 | 355 | 186 | 13 | 20 | 369 | 6 | 296 | 4.57e-30 | 117 |
| Msa1041540 | MtrunA17_Chr3g0120711 | 50.000 | 100 | 50 | 0 | 20 | 119 | 5 | 104 | 1.25e-29 | 118 |
| Msa1041540 | MtrunA17_Chr3g0120711 | 55.000 | 60 | 24 | 1 | 310 | 369 | 339 | 395 | 5.18e-12 | 66.6 |
| Msa1041540 | MtrunA17_Chr7g0251781 | 45.255 | 137 | 57 | 4 | 19 | 148 | 4 | 129 | 6.07e-29 | 115 |
| Msa1041540 | MtrunA17_Chr7g0251781 | 46.914 | 81 | 42 | 1 | 290 | 369 | 302 | 382 | 6.78e-14 | 72.4 |
| Msa1041540 | MtrunA17_Chr5g0429341 | 48.515 | 101 | 51 | 1 | 20 | 119 | 5 | 105 | 8.70e-29 | 115 |
| Msa1041540 | MtrunA17_Chr2g0322941 | 45.000 | 100 | 54 | 1 | 20 | 119 | 44 | 142 | 1.01e-21 | 92.8 |
| Msa1041540 | MtrunA17_Chr1g0209071 | 37.736 | 106 | 64 | 1 | 18 | 123 | 3 | 106 | 2.18e-20 | 91.3 |
| Msa1041540 | MtrunA17_Chr7g0220721 | 36.283 | 113 | 64 | 3 | 18 | 126 | 24 | 132 | 1.40e-18 | 86.7 |
| Msa1041540 | MtrunA17_Chr3g0136701 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 1.19e-17 | 82.4 |
| Msa1041540 | MtrunA17_Chr4g0072871 | 40.449 | 89 | 52 | 1 | 20 | 107 | 22 | 110 | 1.34e-17 | 83.6 |
| Msa1041540 | MtrunA17_Chr4g0072871 | 41.176 | 68 | 40 | 0 | 302 | 369 | 272 | 339 | 2.37e-11 | 64.7 |
| Msa1041540 | MtrunA17_Chr4g0033641 | 43.478 | 92 | 42 | 2 | 20 | 101 | 5 | 96 | 9.58e-16 | 75.9 |
| Msa1041540 | MtrunA17_Chr1g0155811 | 35.354 | 99 | 53 | 2 | 20 | 107 | 5 | 103 | 1.24e-13 | 70.5 |
| Msa1041540 | MtrunA17_Chr5g0405151 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.21e-13 | 68.2 |
| Msa1041540 | MtrunA17_Chr2g0329511 | 39.796 | 98 | 49 | 2 | 20 | 107 | 5 | 102 | 3.41e-13 | 68.6 |
| Msa1041540 | MtrunA17_Chr2g0322951 | 63.636 | 44 | 16 | 0 | 326 | 369 | 90 | 133 | 5.49e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1041540 | AT2G47890.1 | 46.006 | 363 | 148 | 9 | 14 | 369 | 7 | 328 | 5.77e-95 | 287 |
| Msa1041540 | AT2G47890.3 | 42.136 | 337 | 147 | 9 | 14 | 343 | 7 | 302 | 6.11e-76 | 237 |
| Msa1041540 | AT2G47890.2 | 51.163 | 215 | 81 | 3 | 14 | 227 | 7 | 198 | 2.57e-71 | 223 |
| Msa1041540 | AT3G07650.3 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.22e-39 | 142 |
| Msa1041540 | AT3G07650.2 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.22e-39 | 142 |
| Msa1041540 | AT3G07650.4 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.22e-39 | 142 |
| Msa1041540 | AT3G07650.1 | 30.933 | 375 | 211 | 14 | 20 | 369 | 5 | 356 | 9.22e-39 | 142 |
| Msa1041540 | AT1G28050.1 | 35.897 | 195 | 103 | 6 | 19 | 209 | 8 | 184 | 4.39e-34 | 131 |
| Msa1041540 | AT1G28050.1 | 50.725 | 69 | 33 | 1 | 302 | 369 | 358 | 426 | 4.37e-13 | 70.5 |
| Msa1041540 | AT2G33500.2 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.71e-33 | 129 |
| Msa1041540 | AT2G33500.2 | 41.525 | 118 | 60 | 3 | 258 | 369 | 283 | 397 | 1.06e-15 | 78.2 |
| Msa1041540 | AT2G33500.1 | 51.351 | 111 | 53 | 1 | 19 | 128 | 11 | 121 | 1.76e-33 | 129 |
| Msa1041540 | AT2G33500.1 | 39.831 | 118 | 63 | 2 | 258 | 369 | 283 | 398 | 1.89e-15 | 77.8 |
| Msa1041540 | AT3G21880.1 | 31.165 | 369 | 210 | 13 | 20 | 369 | 5 | 348 | 9.23e-33 | 126 |
| Msa1041540 | AT3G21880.3 | 31.165 | 369 | 210 | 13 | 20 | 369 | 9 | 352 | 9.71e-33 | 126 |
| Msa1041540 | AT3G21880.2 | 31.165 | 369 | 210 | 13 | 20 | 369 | 9 | 352 | 9.71e-33 | 126 |
| Msa1041540 | AT5G48250.1 | 46.226 | 106 | 54 | 1 | 20 | 122 | 5 | 110 | 9.00e-29 | 115 |
| Msa1041540 | AT1G68190.1 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 2.06e-20 | 91.7 |
| Msa1041540 | AT1G68190.3 | 38.679 | 106 | 64 | 1 | 18 | 123 | 12 | 116 | 2.06e-20 | 91.7 |
| Msa1041540 | AT4G15250.1 | 42.000 | 100 | 57 | 1 | 20 | 119 | 5 | 103 | 2.29e-20 | 91.3 |
| Msa1041540 | AT1G68190.2 | 38.679 | 106 | 64 | 1 | 18 | 123 | 41 | 145 | 2.42e-20 | 92.0 |
| Msa1041540 | AT5G15840.1 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 8.95e-20 | 90.1 |
| Msa1041540 | AT5G15840.2 | 43.011 | 93 | 52 | 1 | 18 | 109 | 18 | 110 | 1.84e-19 | 87.8 |
| Msa1041540 | AT5G24930.1 | 40.449 | 89 | 52 | 1 | 20 | 107 | 6 | 94 | 4.18e-18 | 85.1 |
| Msa1041540 | AT5G24930.1 | 52.632 | 57 | 23 | 1 | 313 | 369 | 284 | 336 | 9.63e-11 | 63.2 |
| Msa1041540 | AT5G15850.1 | 42.045 | 88 | 50 | 1 | 18 | 104 | 10 | 97 | 4.28e-18 | 85.1 |
| Msa1041540 | AT5G15850.1 | 35.075 | 134 | 66 | 5 | 252 | 369 | 199 | 327 | 2.55e-11 | 64.7 |
| Msa1041540 | AT3G02380.1 | 40.000 | 95 | 56 | 1 | 11 | 104 | 7 | 101 | 5.23e-18 | 84.7 |
| Msa1041540 | AT3G02380.1 | 60.417 | 48 | 19 | 0 | 322 | 369 | 272 | 319 | 2.59e-11 | 64.7 |
| Msa1041540 | AT2G24790.1 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 5.91e-18 | 84.0 |
| Msa1041540 | AT2G24790.2 | 39.560 | 91 | 54 | 1 | 18 | 107 | 6 | 96 | 8.03e-18 | 82.0 |
| Msa1041540 | AT5G57660.1 | 39.560 | 91 | 50 | 2 | 18 | 107 | 20 | 106 | 1.55e-17 | 83.6 |
| Msa1041540 | AT4G38960.1 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.31e-13 | 67.0 |
| Msa1041540 | AT4G38960.6 | 40.000 | 80 | 40 | 1 | 20 | 91 | 5 | 84 | 7.31e-13 | 67.0 |
| Msa1041540 | AT2G21320.1 | 38.750 | 80 | 41 | 1 | 20 | 91 | 5 | 84 | 2.78e-12 | 65.1 |
| Msa1041540 | AT1G75540.1 | 35.000 | 100 | 52 | 2 | 20 | 106 | 5 | 104 | 4.15e-12 | 67.0 |
| Msa1041540 | AT2G31380.1 | 36.170 | 94 | 51 | 1 | 20 | 104 | 5 | 98 | 1.57e-11 | 64.3 |
| Msa1041540 | AT1G06040.1 | 35.106 | 94 | 52 | 1 | 20 | 104 | 5 | 98 | 9.71e-11 | 62.0 |
Find 134 sgRNAs with CRISPR-Local
Find 235 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGATATATCACTCTGATTT+TGG | 0.166869 | 7_1:-79117996 | Msa1041540:three_prime_UTR |
| TAAATAGTCATAATATTTAT+TGG | 0.170269 | 7_1:+79118044 | None:intergenic |
| CATGTGACTCATTCATTTCT+TGG | 0.181063 | 7_1:+79121117 | None:intergenic |
| GGGTTAGGGTTAGGGTTTCT+AGG | 0.248419 | 7_1:+79120973 | None:intergenic |
| CAGTTTCTTATATTATATTA+TGG | 0.248631 | 7_1:-79118220 | Msa1041540:three_prime_UTR |
| TTGTGTGAAGGGTTAGGGTT+AGG | 0.274503 | 7_1:+79120964 | None:intergenic |
| ATTATGACTATTTAGTTTAT+CGG | 0.286559 | 7_1:-79118035 | Msa1041540:three_prime_UTR |
| ATCGCATGAATCACAGATTA+AGG | 0.318847 | 7_1:+79120807 | None:intergenic |
| ATTCTGGGTTTGCAGGATAT+TGG | 0.319782 | 7_1:-79120631 | Msa1041540:CDS |
| TAGCAAAATGCTTCCTTCTT+GGG | 0.321320 | 7_1:+79118166 | None:intergenic |
| TATGGAGAAGGAACGGCTTT+AGG | 0.323731 | 7_1:+79119266 | None:intergenic |
| AAATAGTCATAATATTTATT+GGG | 0.324041 | 7_1:+79118045 | None:intergenic |
| CTAGCAAAATGCTTCCTTCT+TGG | 0.324663 | 7_1:+79118165 | None:intergenic |
| GACTGTCTGATATGTTTGTT+TGG | 0.326886 | 7_1:-79120543 | Msa1041540:CDS |
| GCTTGGAAGGTGCTTATGTT+TGG | 0.334046 | 7_1:-79118109 | Msa1041540:three_prime_UTR |
| GGTTAGGTGGAATGAGGATA+TGG | 0.336947 | 7_1:+79121065 | None:intergenic |
| ACAGATATGACAAGCATATA+AGG | 0.340161 | 7_1:-79118694 | Msa1041540:intron |
| TCTTGACTTGCTAACTCATA+TGG | 0.342545 | 7_1:+79119248 | None:intergenic |
| ATAGTACATGATTGTAAATT+CGG | 0.343940 | 7_1:+79117915 | None:intergenic |
| ACCATGTAAAGTTGTAGTTC+TGG | 0.344753 | 7_1:-79117876 | Msa1041540:three_prime_UTR |
| AATAGTTTGTGTGAAGGGTT+AGG | 0.348641 | 7_1:+79120958 | None:intergenic |
| CTTGGAAGGTGCTTATGTTT+GGG | 0.352531 | 7_1:-79118108 | Msa1041540:three_prime_UTR |
| GCCGGTGGTATATACTCTTC+AGG | 0.353812 | 7_1:+79119904 | None:intergenic |
| TGTGTGAAGGGTTAGGGTTA+GGG | 0.355224 | 7_1:+79120965 | None:intergenic |
| GAGAGTGGCAAAAGAGGATT+TGG | 0.355929 | 7_1:+79121094 | None:intergenic |
| AGTGTAGGAGATGGGTTTGT+TGG | 0.360731 | 7_1:-79120580 | Msa1041540:CDS |
| TTCTTCGGTGTGAGCTTTGA+AGG | 0.363654 | 7_1:+79119433 | None:intergenic |
| TATATACTCTTCAGGATCAT+AGG | 0.367421 | 7_1:+79119912 | None:intergenic |
| ATGATTTCAGTGCTCTATCT+TGG | 0.379435 | 7_1:+79118616 | None:intergenic |
| GGAGAGCAGGACAAGAGTTA+AGG | 0.397226 | 7_1:-79118648 | Msa1041540:CDS |
| AAACATTCTGTATCTTCTGC+TGG | 0.403504 | 7_1:-79119401 | Msa1041540:CDS |
| CCATGTAAAGTTGTAGTTCT+GGG | 0.404473 | 7_1:-79117875 | Msa1041540:three_prime_UTR |
| CTTAGAGAAGAGTTGATTTG+TGG | 0.405751 | 7_1:+79120840 | None:intergenic |
| TTTGTCGATTCTGGGTTTGC+AGG | 0.409347 | 7_1:-79120638 | Msa1041540:CDS |
| AGTTGTTGAAGTGAGGATAA+TGG | 0.415599 | 7_1:+79121152 | None:intergenic |
| GTGTAGGAGATGGGTTTGTT+GGG | 0.419510 | 7_1:-79120579 | Msa1041540:CDS |
| AAAGGGATTCTGCATTATTA+CGG | 0.421974 | 7_1:-79119226 | Msa1041540:CDS |
| AGAGAAAATGTGAGGAGAAA+AGG | 0.424988 | 7_1:+79121044 | None:intergenic |
| GCGTCCCTCCGTTGTTACAC+TGG | 0.441856 | 7_1:+79119366 | None:intergenic |
| CCCAGAACTACAACTTTACA+TGG | 0.445462 | 7_1:+79117875 | None:intergenic |
| GTATGAATCACGTAAAGTTC+GGG | 0.445996 | 7_1:-79118672 | Msa1041540:CDS |
| GGTATGAATCACGTAAAGTT+CGG | 0.449433 | 7_1:-79118673 | Msa1041540:CDS |
| CCACCGGCAAATTTATCTAC+AGG | 0.455322 | 7_1:-79119889 | Msa1041540:CDS |
| TTCTCATAATTATCGTGCTA+TGG | 0.457659 | 7_1:-79120470 | Msa1041540:CDS |
| AACATTCTGTATCTTCTGCT+GGG | 0.457746 | 7_1:-79119400 | Msa1041540:CDS |
| AAACCTGTAGATAAATTTGC+CGG | 0.458844 | 7_1:+79119886 | None:intergenic |
| GAGAGCAGGACAAGAGTTAA+GGG | 0.458882 | 7_1:-79118647 | Msa1041540:CDS |
| ACTGTCTGATATGTTTGTTT+GGG | 0.461387 | 7_1:-79120542 | Msa1041540:CDS |
| AGTGCTCTATCTTGGCAAAT+CGG | 0.463266 | 7_1:+79118624 | None:intergenic |
| AGAAGCATTACCTCATTTGA+AGG | 0.463647 | 7_1:+79119835 | None:intergenic |
| ATTATATTATGGAGCACCTA+TGG | 0.465673 | 7_1:-79118209 | Msa1041540:three_prime_UTR |
| ATAGTTTGTGTGAAGGGTTA+GGG | 0.471313 | 7_1:+79120959 | None:intergenic |
| CCGTTGTTACACTGGGTATG+AGG | 0.476347 | 7_1:+79119374 | None:intergenic |
| ATGTTTAAGTGAAATTTCTT+CGG | 0.479598 | 7_1:+79119418 | None:intergenic |
| GTCACAAGAGAAACAGAGTT+TGG | 0.482714 | 7_1:+79120876 | None:intergenic |
| TTTGAAGAGAGTGGCAAAAG+AGG | 0.482855 | 7_1:+79121088 | None:intergenic |
| CATGAACGAAGGCCTCTTGA+GGG | 0.483331 | 7_1:-79120691 | Msa1041540:CDS |
| AAGATAGAGCACTGAAATCA+TGG | 0.483808 | 7_1:-79118614 | Msa1041540:intron |
| AAATGTGAGGAGAAAAGGTT+AGG | 0.495302 | 7_1:+79121049 | None:intergenic |
| ATGAGTTAGCAAGTCAAGAA+AGG | 0.496861 | 7_1:-79119244 | Msa1041540:CDS |
| AGCAAAATGCTTCCTTCTTG+GGG | 0.503535 | 7_1:+79118167 | None:intergenic |
| GTAAAGTTCGGGCGGAGAGC+AGG | 0.504523 | 7_1:-79118661 | Msa1041540:CDS |
| GTCGAAATAGTTTGTGTGAA+GGG | 0.509191 | 7_1:+79120953 | None:intergenic |
| GCACGATAATTATGAGAAGA+AGG | 0.510409 | 7_1:+79120475 | None:intergenic |
| TCTTGAACCTGTAGCTTGGA+AGG | 0.512199 | 7_1:-79118122 | Msa1041540:three_prime_UTR |
| GCTTTGAAGGATGTATCAAC+AGG | 0.514822 | 7_1:+79119446 | None:intergenic |
| CTCAGGAAAGTGTAGGAGAT+GGG | 0.521940 | 7_1:-79120588 | Msa1041540:CDS |
| ATATACTCTTCAGGATCATA+GGG | 0.522685 | 7_1:+79119913 | None:intergenic |
| TCGTCAAGACTAACAAAAGA+AGG | 0.524243 | 7_1:+79120514 | None:intergenic |
| AGAAAAGGTTAGGTGGAATG+AGG | 0.531678 | 7_1:+79121059 | None:intergenic |
| TGAGTTAGCAAGTCAAGAAA+GGG | 0.532628 | 7_1:-79119243 | Msa1041540:CDS |
| TTTGTTGGGTATGAGATTGA+AGG | 0.533817 | 7_1:-79120565 | Msa1041540:CDS |
| ATAAGCACCTTCCAAGCTAC+AGG | 0.535527 | 7_1:+79118115 | None:intergenic |
| TGGAGCACCTATGGTAGACT+TGG | 0.545874 | 7_1:-79118200 | Msa1041540:three_prime_UTR |
| CGTCCCTCCGTTGTTACACT+GGG | 0.546187 | 7_1:+79119367 | None:intergenic |
| TCATGAACGAAGGCCTCTTG+AGG | 0.546653 | 7_1:-79120692 | Msa1041540:CDS |
| CCTCAGGAAAGTGTAGGAGA+TGG | 0.550053 | 7_1:-79120589 | Msa1041540:CDS |
| GTTATTGAAACAGAATCGTA+AGG | 0.552534 | 7_1:-79119998 | Msa1041540:intron |
| TGATATTGTTCCTTCAAATG+AGG | 0.553141 | 7_1:-79119845 | Msa1041540:intron |
| GCTCATCCAACTTCAGTCCA+AGG | 0.553237 | 7_1:+79117789 | None:intergenic |
| GGAGGTTCCTCCTTTGCCCA+AGG | 0.554443 | 7_1:-79120449 | Msa1041540:intron |
| TTTCGACCTTGTGATTATTG+TGG | 0.554518 | 7_1:-79120937 | Msa1041540:CDS |
| TTGTTCTTGAACCTGTAGCT+TGG | 0.556762 | 7_1:-79118126 | Msa1041540:three_prime_UTR |
| GTGAACCCTTGGACTGAAGT+TGG | 0.558798 | 7_1:-79117795 | Msa1041540:three_prime_UTR |
| GTAGAACAGAGTATAGTAGC+AGG | 0.559506 | 7_1:+79120778 | None:intergenic |
| CTCTTAAACCACACCATGGG+TGG | 0.560180 | 7_1:-79121000 | Msa1041540:exon |
| AGGATATGGTTTGAAGAGAG+TGG | 0.565322 | 7_1:+79121079 | None:intergenic |
| AAGGTGCTTATGTTTGGGCA+AGG | 0.567565 | 7_1:-79118103 | Msa1041540:three_prime_UTR |
| GAGAGATGAGAGAAAATGTG+AGG | 0.568388 | 7_1:+79121036 | None:intergenic |
| ACAGGAACAACTTGATGCAT+AGG | 0.575038 | 7_1:+79119464 | None:intergenic |
| GACAAAAGCTCAGTAACTGA+AGG | 0.575937 | 7_1:+79120655 | None:intergenic |
| ATGAATTATACCTTGGGCAA+AGG | 0.577881 | 7_1:+79120439 | None:intergenic |
| AATTATACCTTGGGCAAAGG+AGG | 0.579881 | 7_1:+79120442 | None:intergenic |
| CTCATCCAACTTCAGTCCAA+GGG | 0.582505 | 7_1:+79117790 | None:intergenic |
| GGTCGAAATAGTTTGTGTGA+AGG | 0.583503 | 7_1:+79120952 | None:intergenic |
| GATTTGTGGAGTGAACTTCA+CGG | 0.583624 | 7_1:+79120854 | None:intergenic |
| TGTGAGGAGAAAAGGTTAGG+TGG | 0.589856 | 7_1:+79121052 | None:intergenic |
| GCGTCCCTCCGTTGTTACAG+TGG | 0.590695 | 7_1:+79119327 | None:intergenic |
| TAGGAGAACCACCCATGGTG+TGG | 0.595775 | 7_1:+79120992 | None:intergenic |
| TCTCTCAACCACTGTAACAA+CGG | 0.600835 | 7_1:-79119335 | Msa1041540:CDS |
| TCATAATTATCGTGCTATGG+AGG | 0.601458 | 7_1:-79120467 | Msa1041540:CDS |
| CTTGCTAACTCATATGGAGA+AGG | 0.601483 | 7_1:+79119254 | None:intergenic |
| CATGAGGTGAAGATAGTGAA+AGG | 0.604807 | 7_1:+79120710 | None:intergenic |
| TCAACCACTGTAACAACGGA+GGG | 0.607091 | 7_1:-79119331 | Msa1041540:CDS |
| AGGAGTCATATACTTCATCC+TGG | 0.608350 | 7_1:-79118083 | Msa1041540:three_prime_UTR |
| AGCAAAAGAAGAAAACAAGA+AGG | 0.608996 | 7_1:-79119199 | Msa1041540:intron |
| GGAGCAGAAGTACCCCAAGA+AGG | 0.610072 | 7_1:-79118179 | Msa1041540:three_prime_UTR |
| TCCTGAAGAGTATATACCAC+CGG | 0.614465 | 7_1:-79119905 | Msa1041540:CDS |
| TTCTGCTCCAAGTCTACCAT+AGG | 0.619233 | 7_1:+79118193 | None:intergenic |
| TCAAGAGGCCTTCGTTCATG+AGG | 0.621272 | 7_1:+79120694 | None:intergenic |
| CAGAATCGTAAGGCTGCTTG+TGG | 0.621356 | 7_1:-79119988 | Msa1041540:CDS |
| CTCTCTCTTAAACCACACCA+TGG | 0.624493 | 7_1:-79121004 | Msa1041540:exon |
| TTTCTGTCAAAACTGTGACT+GGG | 0.626975 | 7_1:-79120743 | Msa1041540:CDS |
| ACATTCTGTATCTTCTGCTG+GGG | 0.636591 | 7_1:-79119399 | Msa1041540:CDS |
| ATACCCAGTGTAACAACGGA+GGG | 0.637441 | 7_1:-79119370 | Msa1041540:CDS |
| AAGCACAAGTTGTTGAAGTG+AGG | 0.641309 | 7_1:+79121145 | None:intergenic |
| GGCTTTAGGAGTAGTTGACA+AGG | 0.642101 | 7_1:+79119280 | None:intergenic |
| CACCCTGTAAAACCCTCAAG+AGG | 0.645981 | 7_1:+79120679 | None:intergenic |
| ACAAAAGCTCAGTAACTGAA+GGG | 0.647464 | 7_1:+79120656 | None:intergenic |
| TTGACAAAATCACAATGACA+CGG | 0.648433 | 7_1:+79117943 | None:intergenic |
| TCAGACTTGAGATACTCTGA+AGG | 0.649177 | 7_1:+79119305 | None:intergenic |
| CTCAACCACTGTAACAACGG+AGG | 0.655253 | 7_1:-79119332 | Msa1041540:CDS |
| TAACTCATATGGAGAAGGAA+CGG | 0.655311 | 7_1:+79119259 | None:intergenic |
| TCTCTCTTAAACCACACCAT+GGG | 0.656520 | 7_1:-79121003 | Msa1041540:exon |
| CCTGTAGATAAATTTGCCGG+TGG | 0.659097 | 7_1:+79119889 | None:intergenic |
| CCTCATACCCAGTGTAACAA+CGG | 0.666009 | 7_1:-79119374 | Msa1041540:CDS |
| CAGTGGTTGAGAGATTCTGA+AGG | 0.668190 | 7_1:+79119344 | None:intergenic |
| AGCACATTTATAAAACTCAG+AGG | 0.678646 | 7_1:+79117848 | None:intergenic |
| GAATTGCCACAATAATCACA+AGG | 0.683272 | 7_1:+79120931 | None:intergenic |
| TGAATCACGTAAAGTTCGGG+CGG | 0.683457 | 7_1:-79118669 | Msa1041540:CDS |
| CCATCTCCTACACTTTCCTG+AGG | 0.685251 | 7_1:+79120589 | None:intergenic |
| TATCTTCACCTCATGAACGA+AGG | 0.697940 | 7_1:-79120702 | Msa1041540:CDS |
| CATACCCAGTGTAACAACGG+AGG | 0.713642 | 7_1:-79119371 | Msa1041540:CDS |
| GTTTCTAGGAGAACCACCCA+TGG | 0.721828 | 7_1:+79120987 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAGTCATAATATTTATT+GGG | + | chr7_1:79120904-79120923 | None:intergenic | 10.0% |
| !! | TAAATAGTCATAATATTTAT+TGG | + | chr7_1:79120905-79120924 | None:intergenic | 10.0% |
| !!! | TTGGATTTTTTTTTTGTTTT+TGG | - | chr7_1:79118699-79118718 | Msa1041540:intron | 15.0% |
| !!! | TTTTTTTTGTTTTTGGATTT+TGG | - | chr7_1:79118706-79118725 | Msa1041540:intron | 15.0% |
| !! | CTCAAATAAAATATATCAAA+AGG | + | chr7_1:79119955-79119974 | None:intergenic | 15.0% |
| !! | GCATATATATAAATAAAATG+CGG | + | chr7_1:79120700-79120719 | None:intergenic | 15.0% |
| !! | CAGTTTCTTATATTATATTA+TGG | - | chr7_1:79120726-79120745 | Msa1041540:CDS | 15.0% |
| !!! | ATTATGACTATTTAGTTTAT+CGG | - | chr7_1:79120911-79120930 | Msa1041540:CDS | 15.0% |
| !! | AATTTAAAAACAGAGAAAGA+AGG | + | chr7_1:79118546-79118565 | None:intergenic | 20.0% |
| !!! | GAAATTCATTTTGTCTTTTT+AGG | - | chr7_1:79118574-79118593 | Msa1041540:intron | 20.0% |
| !!! | TTTTAATTCTCTGATTCTTA+GGG | - | chr7_1:79118784-79118803 | Msa1041540:intron | 20.0% |
| !! | AAACATTAAAAGGTTGAAAA+TGG | + | chr7_1:79119204-79119223 | None:intergenic | 20.0% |
| !! | ACACACAAATAAACATTAAA+AGG | + | chr7_1:79119214-79119233 | None:intergenic | 20.0% |
| !! | ATGTTTAAGTGAAATTTCTT+CGG | + | chr7_1:79119531-79119550 | None:intergenic | 20.0% |
| !!! | ATTTTATTTGAGAGATATCA+AGG | - | chr7_1:79119963-79119982 | Msa1041540:CDS | 20.0% |
| !!! | TGTTTTTCATGTAAATACAT+GGG | + | chr7_1:79120232-79120251 | None:intergenic | 20.0% |
| !!! | TTGTTTTTCATGTAAATACA+TGG | + | chr7_1:79120233-79120252 | None:intergenic | 20.0% |
| !! | ATAGTACATGATTGTAAATT+CGG | + | chr7_1:79121034-79121053 | None:intergenic | 20.0% |
| ! | TTATCCATGAATTATACCTT+GGG | + | chr7_1:79118516-79118535 | None:intergenic | 25.0% |
| ! | ATTATCCATGAATTATACCT+TGG | + | chr7_1:79118517-79118536 | None:intergenic | 25.0% |
| ! | TCAGATCTTGATTATAAACA+AGG | - | chr7_1:79118628-79118647 | Msa1041540:CDS | 25.0% |
| !!! | GTGAAAACATGATTAGTTTT+TGG | - | chr7_1:79118680-79118699 | Msa1041540:CDS | 25.0% |
| !!! | GTTTTAATTCTCTGATTCTT+AGG | - | chr7_1:79118783-79118802 | Msa1041540:intron | 25.0% |
| ! | TTTAATTCTCTGATTCTTAG+GGG | - | chr7_1:79118785-79118804 | Msa1041540:intron | 25.0% |
| !!! | TGGTTAAAAGGGTTTTTTTT+GGG | + | chr7_1:79118864-79118883 | None:intergenic | 25.0% |
| ! | AAAACAAGAAATCCATTATC+AGG | + | chr7_1:79119177-79119196 | None:intergenic | 25.0% |
| ! | AAAAGAGGGAAAAATAAACA+AGG | + | chr7_1:79119295-79119314 | None:intergenic | 25.0% |
| ! | TAGTAATGTTATCATTTCAG+TGG | - | chr7_1:79119441-79119460 | Msa1041540:CDS | 25.0% |
| ! | ATATTCAATGTCTTGAAGTA+TGG | + | chr7_1:79119801-79119820 | None:intergenic | 25.0% |
| !! | TGATCATTGGATATTTTCAT+TGG | - | chr7_1:79119924-79119943 | Msa1041540:CDS | 25.0% |
| ! | AAATTGAAGAAGTTCAATGT+AGG | - | chr7_1:79120025-79120044 | Msa1041540:intron | 25.0% |
| !! | TCTTTGCAATTTTCAAATGA+TGG | - | chr7_1:79120131-79120150 | Msa1041540:intron | 25.0% |
| !! | GTTTTTCATGTAAATACATG+GGG | + | chr7_1:79120231-79120250 | None:intergenic | 25.0% |
| ! | AACAACTTAACGAAAATTCT+TGG | - | chr7_1:79120366-79120385 | Msa1041540:intron | 25.0% |
| ! | ATAAGTTCACTATACAACAA+GGG | + | chr7_1:79120420-79120439 | None:intergenic | 25.0% |
| ! | AATAAGTTCACTATACAACA+AGG | + | chr7_1:79120421-79120440 | None:intergenic | 25.0% |
| ! | AAAAAAACAGAACTGTTATG+TGG | + | chr7_1:79120598-79120617 | None:intergenic | 25.0% |
| !!! | TAACTTTTGTAGTTTTAGCT+GGG | - | chr7_1:79120640-79120659 | Msa1041540:CDS | 25.0% |
| ! | TATATAAATAAAATGCGGAC+AGG | + | chr7_1:79120695-79120714 | None:intergenic | 25.0% |
| !!! | ATTTTGGCAAAACATGTATT+TGG | - | chr7_1:79120966-79120985 | Msa1041540:CDS | 25.0% |
| !! | TTTTGGCAAAACATGTATTT+GGG | - | chr7_1:79120967-79120986 | Msa1041540:CDS | 25.0% |
| ACTGTCTGATATGTTTGTTT+GGG | - | chr7_1:79118404-79118423 | Msa1041540:intron | 30.0% | |
| TTCTCATAATTATCGTGCTA+TGG | - | chr7_1:79118476-79118495 | Msa1041540:intron | 30.0% | |
| TGATTATAAACAAGGCATGA+TGG | - | chr7_1:79118636-79118655 | Msa1041540:CDS | 30.0% | |
| GATTATAAACAAGGCATGAT+GGG | - | chr7_1:79118637-79118656 | Msa1041540:CDS | 30.0% | |
| ! | TTTTTGGATTTTGGACTGTT+TGG | - | chr7_1:79118715-79118734 | Msa1041540:intron | 30.0% |
| GAAACAAACCCTAAGTAATT+TGG | - | chr7_1:79118807-79118826 | Msa1041540:intron | 30.0% | |
| !!! | TTTTTTTTGGGGTGGTTAAA+GGG | + | chr7_1:79118852-79118871 | None:intergenic | 30.0% |
| !!! | GGTTAAAAGGGTTTTTTTTG+GGG | + | chr7_1:79118863-79118882 | None:intergenic | 30.0% |
| !!! | GTGGTTAAAAGGGTTTTTTT+TGG | + | chr7_1:79118865-79118884 | None:intergenic | 30.0% |
| TTCAACTCAAGTGGTTAAAA+GGG | + | chr7_1:79118875-79118894 | None:intergenic | 30.0% | |
| ! | TTCAATTTGTTCAACTCAAG+TGG | + | chr7_1:79118884-79118903 | None:intergenic | 30.0% |
| !! | GCTGCAATTTTAACATATTC+TGG | - | chr7_1:79118918-79118937 | Msa1041540:intron | 30.0% |
| GTTATTGAAACAGAATCGTA+AGG | - | chr7_1:79118948-79118967 | Msa1041540:intron | 30.0% | |
| ATATACTCTTCAGGATCATA+GGG | + | chr7_1:79119036-79119055 | None:intergenic | 30.0% | |
| TATATACTCTTCAGGATCAT+AGG | + | chr7_1:79119037-79119056 | None:intergenic | 30.0% | |
| AAACCTGTAGATAAATTTGC+CGG | + | chr7_1:79119063-79119082 | None:intergenic | 30.0% | |
| TGATATTGTTCCTTCAAATG+AGG | - | chr7_1:79119101-79119120 | Msa1041540:intron | 30.0% | |
| ATAGGAGCAATCAAAAAAGA+GGG | + | chr7_1:79119309-79119328 | None:intergenic | 30.0% | |
| TTACCAAAAAGAGTGAAGAT+AGG | + | chr7_1:79119327-79119346 | None:intergenic | 30.0% | |
| AAATTAGAATAACAACCACC+TGG | + | chr7_1:79119382-79119401 | None:intergenic | 30.0% | |
| AAAGGGATTCTGCATTATTA+CGG | - | chr7_1:79119720-79119739 | Msa1041540:intron | 30.0% | |
| AGCAAAAGAAGAAAACAAGA+AGG | - | chr7_1:79119747-79119766 | Msa1041540:intron | 30.0% | |
| ATGATCAAGCCATATTACTT+GGG | + | chr7_1:79119911-79119930 | None:intergenic | 30.0% | |
| AATGATCAAGCCATATTACT+TGG | + | chr7_1:79119912-79119931 | None:intergenic | 30.0% | |
| AAGTAATATGGCTTGATCAT+TGG | - | chr7_1:79119911-79119930 | Msa1041540:CDS | 30.0% | |
| ! | TGCAATTTTCAAATGATGGT+TGG | - | chr7_1:79120135-79120154 | Msa1041540:intron | 30.0% |
| ACAGATATGACAAGCATATA+AGG | - | chr7_1:79120252-79120271 | Msa1041540:intron | 30.0% | |
| TCTGATAATACTACTGTCAA+CGG | + | chr7_1:79120523-79120542 | None:intergenic | 30.0% | |
| !!! | ATTATCAGATTTGTTTTGCC+TGG | - | chr7_1:79120534-79120553 | Msa1041540:CDS | 30.0% |
| !!! | CTAACTTTTGTAGTTTTAGC+TGG | - | chr7_1:79120639-79120658 | Msa1041540:CDS | 30.0% |
| !!! | AACTTTTGTAGTTTTAGCTG+GGG | - | chr7_1:79120641-79120660 | Msa1041540:CDS | 30.0% |
| ! | ATTATATTATGGAGCACCTA+TGG | - | chr7_1:79120737-79120756 | Msa1041540:CDS | 30.0% |
| TTGACAAAATCACAATGACA+CGG | + | chr7_1:79121006-79121025 | None:intergenic | 30.0% | |
| AGCACATTTATAAAACTCAG+AGG | + | chr7_1:79121101-79121120 | None:intergenic | 30.0% | |
| !!! | CACACTTTTTCTTCTCTTTT+TGG | + | chr7_1:79121134-79121153 | None:intergenic | 30.0% |
| AGTTGTTGAAGTGAGGATAA+TGG | + | chr7_1:79117797-79117816 | None:intergenic | 35.0% | |
| CATGTGACTCATTCATTTCT+TGG | + | chr7_1:79117832-79117851 | None:intergenic | 35.0% | |
| AAATGTGAGGAGAAAAGGTT+AGG | + | chr7_1:79117900-79117919 | None:intergenic | 35.0% | |
| AGAGAAAATGTGAGGAGAAA+AGG | + | chr7_1:79117905-79117924 | None:intergenic | 35.0% | |
| ! | ATAGTTTGTGTGAAGGGTTA+GGG | + | chr7_1:79117990-79118009 | None:intergenic | 35.0% |
| ! | AATAGTTTGTGTGAAGGGTT+AGG | + | chr7_1:79117991-79118010 | None:intergenic | 35.0% |
| ! | GTCGAAATAGTTTGTGTGAA+GGG | + | chr7_1:79117996-79118015 | None:intergenic | 35.0% |
| TTTCGACCTTGTGATTATTG+TGG | - | chr7_1:79118009-79118028 | Msa1041540:three_prime_UTR | 35.0% | |
| GAATTGCCACAATAATCACA+AGG | + | chr7_1:79118018-79118037 | None:intergenic | 35.0% | |
| !! | CTTAGAGAAGAGTTGATTTG+TGG | + | chr7_1:79118109-79118128 | None:intergenic | 35.0% |
| ATCGCATGAATCACAGATTA+AGG | + | chr7_1:79118142-79118161 | None:intergenic | 35.0% | |
| !! | ACAGTTTTGACAGAAAACAG+AGG | + | chr7_1:79118199-79118218 | None:intergenic | 35.0% |
| ! | TTTTCTGTCAAAACTGTGAC+TGG | - | chr7_1:79118202-79118221 | Msa1041540:three_prime_UTR | 35.0% |
| TTTCTGTCAAAACTGTGACT+GGG | - | chr7_1:79118203-79118222 | Msa1041540:three_prime_UTR | 35.0% | |
| ACAAAAGCTCAGTAACTGAA+GGG | + | chr7_1:79118293-79118312 | None:intergenic | 35.0% | |
| !! | AAAATCTTTGCTTTTGCCTC+AGG | - | chr7_1:79118341-79118360 | Msa1041540:intron | 35.0% |
| TTTGTTGGGTATGAGATTGA+AGG | - | chr7_1:79118381-79118400 | Msa1041540:intron | 35.0% | |
| GACTGTCTGATATGTTTGTT+TGG | - | chr7_1:79118403-79118422 | Msa1041540:intron | 35.0% | |
| TCGTCAAGACTAACAAAAGA+AGG | + | chr7_1:79118435-79118454 | None:intergenic | 35.0% | |
| GCACGATAATTATGAGAAGA+AGG | + | chr7_1:79118474-79118493 | None:intergenic | 35.0% | |
| TCATAATTATCGTGCTATGG+AGG | - | chr7_1:79118479-79118498 | Msa1041540:intron | 35.0% | |
| ATGAATTATACCTTGGGCAA+AGG | + | chr7_1:79118510-79118529 | None:intergenic | 35.0% | |
| TTTGCCCAAGGTATAATTCA+TGG | - | chr7_1:79118509-79118528 | Msa1041540:intron | 35.0% | |
| ! | GATGGGATTAGTGCTAAATT+AGG | - | chr7_1:79118654-79118673 | Msa1041540:CDS | 35.0% |
| ! | ACCCTAAGTAATTTGGAGTT+CGG | - | chr7_1:79118814-79118833 | Msa1041540:intron | 35.0% |
| !!! | GTTTTTTTTGGGGTGGTTAA+AGG | + | chr7_1:79118853-79118872 | None:intergenic | 35.0% |
| !!! | TAAAAGGGTTTTTTTTGGGG+TGG | + | chr7_1:79118860-79118879 | None:intergenic | 35.0% |
| GTTCAACTCAAGTGGTTAAA+AGG | + | chr7_1:79118876-79118895 | None:intergenic | 35.0% | |
| !!! | AGGTTTTGATTGCGATGTAA+AGG | - | chr7_1:79119077-79119096 | Msa1041540:intron | 35.0% |
| !! | AGAAGCATTACCTCATTTGA+AGG | + | chr7_1:79119114-79119133 | None:intergenic | 35.0% |
| GAAATCCATTATCAGGAATG+AGG | + | chr7_1:79119170-79119189 | None:intergenic | 35.0% | |
| AGAATCAGAGATGCAAAACA+AGG | + | chr7_1:79119258-79119277 | None:intergenic | 35.0% | |
| GATAGGAGCAATCAAAAAAG+AGG | + | chr7_1:79119310-79119329 | None:intergenic | 35.0% | |
| !! | TTTGGTAAACGAACTTGCTA+TGG | - | chr7_1:79119339-79119358 | Msa1041540:CDS | 35.0% |
| ! | GTATTGATATAAGATGAGCC+AGG | - | chr7_1:79119361-79119380 | Msa1041540:CDS | 35.0% |
| AAACATTCTGTATCTTCTGC+TGG | - | chr7_1:79119545-79119564 | Msa1041540:intron | 35.0% | |
| AACATTCTGTATCTTCTGCT+GGG | - | chr7_1:79119546-79119565 | Msa1041540:intron | 35.0% | |
| TAACTCATATGGAGAAGGAA+CGG | + | chr7_1:79119690-79119709 | None:intergenic | 35.0% | |
| !! | TCTTGACTTGCTAACTCATA+TGG | + | chr7_1:79119701-79119720 | None:intergenic | 35.0% |
| ATGAGTTAGCAAGTCAAGAA+AGG | - | chr7_1:79119702-79119721 | Msa1041540:intron | 35.0% | |
| TGAGTTAGCAAGTCAAGAAA+GGG | - | chr7_1:79119703-79119722 | Msa1041540:intron | 35.0% | |
| ! | GAAGAAAACAAGAAGGTATG+TGG | - | chr7_1:79119754-79119773 | Msa1041540:intron | 35.0% |
| TGAAGTATGGAGTTCAGATA+TGG | + | chr7_1:79119788-79119807 | None:intergenic | 35.0% | |
| ATGATGACTCCCAAGTAATA+TGG | - | chr7_1:79119899-79119918 | Msa1041540:CDS | 35.0% | |
| CAATTCACAGTAAATGGAAC+AGG | + | chr7_1:79120081-79120100 | None:intergenic | 35.0% | |
| GTTCCATTTACTGTGAATTG+TGG | - | chr7_1:79120081-79120100 | Msa1041540:intron | 35.0% | |
| GAACCACAATTCACAGTAAA+TGG | + | chr7_1:79120087-79120106 | None:intergenic | 35.0% | |
| ! | TGTGGTTCTGTAATTGATCA+TGG | - | chr7_1:79120099-79120118 | Msa1041540:intron | 35.0% |
| TTTCATGTAAATACATGGGG+TGG | + | chr7_1:79120228-79120247 | None:intergenic | 35.0% | |
| GGTATGAATCACGTAAAGTT+CGG | - | chr7_1:79120273-79120292 | Msa1041540:intron | 35.0% | |
| GTATGAATCACGTAAAGTTC+GGG | - | chr7_1:79120274-79120293 | Msa1041540:intron | 35.0% | |
| ATGATTTCAGTGCTCTATCT+TGG | + | chr7_1:79120333-79120352 | None:intergenic | 35.0% | |
| !! | AAGATAGAGCACTGAAATCA+TGG | - | chr7_1:79120332-79120351 | Msa1041540:intron | 35.0% |
| TGTATGATGTTGTGTATCCT+TGG | - | chr7_1:79120457-79120476 | Msa1041540:CDS | 35.0% | |
| !! | CATAAAGTTGATGATTTGCC+AGG | + | chr7_1:79120555-79120574 | None:intergenic | 35.0% |
| !!! | ACTTTTGTAGTTTTAGCTGG+GGG | - | chr7_1:79120642-79120661 | Msa1041540:CDS | 35.0% |
| GGGAAATACTTGTAAGTTTG+CGG | - | chr7_1:79120663-79120682 | Msa1041540:CDS | 35.0% | |
| TAGCAAAATGCTTCCTTCTT+GGG | + | chr7_1:79120783-79120802 | None:intergenic | 35.0% | |
| ! | GCGATATATCACTCTGATTT+TGG | - | chr7_1:79120950-79120969 | Msa1041540:CDS | 35.0% |
| ACCATGTAAAGTTGTAGTTC+TGG | - | chr7_1:79121070-79121089 | Msa1041540:five_prime_UTR | 35.0% | |
| CCATGTAAAGTTGTAGTTCT+GGG | - | chr7_1:79121071-79121090 | Msa1041540:five_prime_UTR | 35.0% | |
| AAGCACAAGTTGTTGAAGTG+AGG | + | chr7_1:79117804-79117823 | None:intergenic | 40.0% | |
| TTTGAAGAGAGTGGCAAAAG+AGG | + | chr7_1:79117861-79117880 | None:intergenic | 40.0% | |
| AGGATATGGTTTGAAGAGAG+TGG | + | chr7_1:79117870-79117889 | None:intergenic | 40.0% | |
| AGAAAAGGTTAGGTGGAATG+AGG | + | chr7_1:79117890-79117909 | None:intergenic | 40.0% | |
| GAGAGATGAGAGAAAATGTG+AGG | + | chr7_1:79117913-79117932 | None:intergenic | 40.0% | |
| TCTCTCTTAAACCACACCAT+GGG | - | chr7_1:79117943-79117962 | Msa1041540:three_prime_UTR | 40.0% | |
| ! | GGTCGAAATAGTTTGTGTGA+AGG | + | chr7_1:79117997-79118016 | None:intergenic | 40.0% |
| GTCACAAGAGAAACAGAGTT+TGG | + | chr7_1:79118073-79118092 | None:intergenic | 40.0% | |
| GATTTGTGGAGTGAACTTCA+CGG | + | chr7_1:79118095-79118114 | None:intergenic | 40.0% | |
| GTAGAACAGAGTATAGTAGC+AGG | + | chr7_1:79118171-79118190 | None:intergenic | 40.0% | |
| CATGAGGTGAAGATAGTGAA+AGG | + | chr7_1:79118239-79118258 | None:intergenic | 40.0% | |
| TATCTTCACCTCATGAACGA+AGG | - | chr7_1:79118244-79118263 | Msa1041540:intron | 40.0% | |
| GACAAAAGCTCAGTAACTGA+AGG | + | chr7_1:79118294-79118313 | None:intergenic | 40.0% | |
| !!! | TACTGAGCTTTTGTCGATTC+TGG | - | chr7_1:79118299-79118318 | Msa1041540:intron | 40.0% |
| !!! | ACTGAGCTTTTGTCGATTCT+GGG | - | chr7_1:79118300-79118319 | Msa1041540:intron | 40.0% |
| ATTCTGGGTTTGCAGGATAT+TGG | - | chr7_1:79118315-79118334 | Msa1041540:intron | 40.0% | |
| AATTATACCTTGGGCAAAGG+AGG | + | chr7_1:79118507-79118526 | None:intergenic | 40.0% | |
| GCCGAACTCCAAATTACTTA+GGG | + | chr7_1:79118818-79118837 | None:intergenic | 40.0% | |
| AGCCGAACTCCAAATTACTT+AGG | + | chr7_1:79118819-79118838 | None:intergenic | 40.0% | |
| ! | TCCTGAAGAGTATATACCAC+CGG | - | chr7_1:79119041-79119060 | Msa1041540:intron | 40.0% |
| TCGATCCTCATTCCTGATAA+TGG | - | chr7_1:79119162-79119181 | Msa1041540:intron | 40.0% | |
| ! | GCTCCTATCTTCACTCTTTT+TGG | - | chr7_1:79119321-79119340 | Msa1041540:CDS | 40.0% |
| TTGATATAAGATGAGCCAGG+TGG | - | chr7_1:79119364-79119383 | Msa1041540:CDS | 40.0% | |
| ACAGGAACAACTTGATGCAT+AGG | + | chr7_1:79119485-79119504 | None:intergenic | 40.0% | |
| !! | GCTTTGAAGGATGTATCAAC+AGG | + | chr7_1:79119503-79119522 | None:intergenic | 40.0% |
| ACATTCTGTATCTTCTGCTG+GGG | - | chr7_1:79119547-79119566 | Msa1041540:intron | 40.0% | |
| TCTCTCAACCACTGTAACAA+CGG | - | chr7_1:79119611-79119630 | Msa1041540:intron | 40.0% | |
| TCAGACTTGAGATACTCTGA+AGG | + | chr7_1:79119644-79119663 | None:intergenic | 40.0% | |
| CTTGCTAACTCATATGGAGA+AGG | + | chr7_1:79119695-79119714 | None:intergenic | 40.0% | |
| GGATTGTTGATCAATGAGCT+AGG | - | chr7_1:79120156-79120175 | Msa1041540:intron | 40.0% | |
| AGTGCTCTATCTTGGCAAAT+CGG | + | chr7_1:79120325-79120344 | None:intergenic | 40.0% | |
| !! | TAGAGCACTGAAATCATGGT+AGG | - | chr7_1:79120336-79120355 | Msa1041540:intron | 40.0% |
| !!! | CTTTTGTAGTTTTAGCTGGG+GGG | - | chr7_1:79120643-79120662 | Msa1041540:CDS | 40.0% |
| AGCAAAATGCTTCCTTCTTG+GGG | + | chr7_1:79120782-79120801 | None:intergenic | 40.0% | |
| CTAGCAAAATGCTTCCTTCT+TGG | + | chr7_1:79120784-79120803 | None:intergenic | 40.0% | |
| TTGTTCTTGAACCTGTAGCT+TGG | - | chr7_1:79120820-79120839 | Msa1041540:CDS | 40.0% | |
| !! | CTTGGAAGGTGCTTATGTTT+GGG | - | chr7_1:79120838-79120857 | Msa1041540:CDS | 40.0% |
| AGGAGTCATATACTTCATCC+TGG | - | chr7_1:79120863-79120882 | Msa1041540:CDS | 40.0% | |
| GGGTTGAAAAATAGAAGACC+AGG | + | chr7_1:79120884-79120903 | None:intergenic | 40.0% | |
| CCCAGAACTACAACTTTACA+TGG | + | chr7_1:79121074-79121093 | None:intergenic | 40.0% | |
| ! | GAAGAAAAAGTGTGAACCCT+TGG | - | chr7_1:79121140-79121159 | Msa1041540:five_prime_UTR | 40.0% |
| GAGAGTGGCAAAAGAGGATT+TGG | + | chr7_1:79117855-79117874 | None:intergenic | 45.0% | |
| GGTTAGGTGGAATGAGGATA+TGG | + | chr7_1:79117884-79117903 | None:intergenic | 45.0% | |
| TGTGAGGAGAAAAGGTTAGG+TGG | + | chr7_1:79117897-79117916 | None:intergenic | 45.0% | |
| CTCTCTCTTAAACCACACCA+TGG | - | chr7_1:79117942-79117961 | Msa1041540:three_prime_UTR | 45.0% | |
| TGTGTGAAGGGTTAGGGTTA+GGG | + | chr7_1:79117984-79118003 | None:intergenic | 45.0% | |
| TTGTGTGAAGGGTTAGGGTT+AGG | + | chr7_1:79117985-79118004 | None:intergenic | 45.0% | |
| !! | TTTGTCGATTCTGGGTTTGC+AGG | - | chr7_1:79118308-79118327 | Msa1041540:intron | 45.0% |
| !! | CTTTTGCCTCAGGAAAGTGT+AGG | - | chr7_1:79118351-79118370 | Msa1041540:intron | 45.0% |
| ! | CTCAGGAAAGTGTAGGAGAT+GGG | - | chr7_1:79118358-79118377 | Msa1041540:intron | 45.0% |
| ! | AGTGTAGGAGATGGGTTTGT+TGG | - | chr7_1:79118366-79118385 | Msa1041540:intron | 45.0% |
| ! | GTGTAGGAGATGGGTTTGTT+GGG | - | chr7_1:79118367-79118386 | Msa1041540:intron | 45.0% |
| CCTGTAGATAAATTTGCCGG+TGG | + | chr7_1:79119060-79119079 | None:intergenic | 45.0% | |
| CCACCGGCAAATTTATCTAC+AGG | - | chr7_1:79119057-79119076 | Msa1041540:intron | 45.0% | |
| ! | TTCTTCGGTGTGAGCTTTGA+AGG | + | chr7_1:79119516-79119535 | None:intergenic | 45.0% |
| CCTCATACCCAGTGTAACAA+CGG | - | chr7_1:79119572-79119591 | Msa1041540:intron | 45.0% | |
| ATACCCAGTGTAACAACGGA+GGG | - | chr7_1:79119576-79119595 | Msa1041540:intron | 45.0% | |
| CAGTGGTTGAGAGATTCTGA+AGG | + | chr7_1:79119605-79119624 | None:intergenic | 45.0% | |
| TCAACCACTGTAACAACGGA+GGG | - | chr7_1:79119615-79119634 | Msa1041540:intron | 45.0% | |
| !! | GGCTTTAGGAGTAGTTGACA+AGG | + | chr7_1:79119669-79119688 | None:intergenic | 45.0% |
| TATGGAGAAGGAACGGCTTT+AGG | + | chr7_1:79119683-79119702 | None:intergenic | 45.0% | |
| TGAATCACGTAAAGTTCGGG+CGG | - | chr7_1:79120277-79120296 | Msa1041540:intron | 45.0% | |
| GAGAGCAGGACAAGAGTTAA+GGG | - | chr7_1:79120299-79120318 | Msa1041540:intron | 45.0% | |
| !! | GTATCAAAGCTCTGGATCCA+AGG | + | chr7_1:79120477-79120496 | None:intergenic | 45.0% |
| ACTGCACAGTATCAAAGCTC+TGG | + | chr7_1:79120485-79120504 | None:intergenic | 45.0% | |
| TTCTGCTCCAAGTCTACCAT+AGG | + | chr7_1:79120756-79120775 | None:intergenic | 45.0% | |
| TCTTGAACCTGTAGCTTGGA+AGG | - | chr7_1:79120824-79120843 | Msa1041540:CDS | 45.0% | |
| ATAAGCACCTTCCAAGCTAC+AGG | + | chr7_1:79120834-79120853 | None:intergenic | 45.0% | |
| !! | GCTTGGAAGGTGCTTATGTT+TGG | - | chr7_1:79120837-79120856 | Msa1041540:CDS | 45.0% |
| ! | AAGGTGCTTATGTTTGGGCA+AGG | - | chr7_1:79120843-79120862 | Msa1041540:CDS | 45.0% |
| CTCATCCAACTTCAGTCCAA+GGG | + | chr7_1:79121159-79121178 | None:intergenic | 45.0% | |
| CTCTTAAACCACACCATGGG+TGG | - | chr7_1:79117946-79117965 | Msa1041540:three_prime_UTR | 50.0% | |
| ! | GTTTCTAGGAGAACCACCCA+TGG | + | chr7_1:79117962-79117981 | None:intergenic | 50.0% |
| GGGTTAGGGTTAGGGTTTCT+AGG | + | chr7_1:79117976-79117995 | None:intergenic | 50.0% | |
| TCAAGAGGCCTTCGTTCATG+AGG | + | chr7_1:79118255-79118274 | None:intergenic | 50.0% | |
| TCATGAACGAAGGCCTCTTG+AGG | - | chr7_1:79118254-79118273 | Msa1041540:intron | 50.0% | |
| CATGAACGAAGGCCTCTTGA+GGG | - | chr7_1:79118255-79118274 | Msa1041540:intron | 50.0% | |
| ! | AGGCCTCTTGAGGGTTTTAC+AGG | - | chr7_1:79118264-79118283 | Msa1041540:intron | 50.0% |
| ! | GGCCTCTTGAGGGTTTTACA+GGG | - | chr7_1:79118265-79118284 | Msa1041540:intron | 50.0% |
| CACCCTGTAAAACCCTCAAG+AGG | + | chr7_1:79118270-79118289 | None:intergenic | 50.0% | |
| CCATCTCCTACACTTTCCTG+AGG | + | chr7_1:79118360-79118379 | None:intergenic | 50.0% | |
| ! | CCTCAGGAAAGTGTAGGAGA+TGG | - | chr7_1:79118357-79118376 | Msa1041540:intron | 50.0% |
| CAGAATCGTAAGGCTGCTTG+TGG | - | chr7_1:79118958-79118977 | Msa1041540:intron | 50.0% | |
| GCCGGTGGTATATACTCTTC+AGG | + | chr7_1:79119045-79119064 | None:intergenic | 50.0% | |
| CCGTTGTTACACTGGGTATG+AGG | + | chr7_1:79119575-79119594 | None:intergenic | 50.0% | |
| CATACCCAGTGTAACAACGG+AGG | - | chr7_1:79119575-79119594 | Msa1041540:intron | 50.0% | |
| CTCAACCACTGTAACAACGG+AGG | - | chr7_1:79119614-79119633 | Msa1041540:intron | 50.0% | |
| GGAGAGCAGGACAAGAGTTA+AGG | - | chr7_1:79120298-79120317 | Msa1041540:intron | 50.0% | |
| ! | TGGAGCACCTATGGTAGACT+TGG | - | chr7_1:79120746-79120765 | Msa1041540:CDS | 50.0% |
| GTGAACCCTTGGACTGAAGT+TGG | - | chr7_1:79121151-79121170 | Msa1041540:five_prime_UTR | 50.0% | |
| GCTCATCCAACTTCAGTCCA+AGG | + | chr7_1:79121160-79121179 | None:intergenic | 50.0% | |
| TAGGAGAACCACCCATGGTG+TGG | + | chr7_1:79117957-79117976 | None:intergenic | 55.0% | |
| CGTCCCTCCGTTGTTACACT+GGG | + | chr7_1:79119582-79119601 | None:intergenic | 55.0% | |
| !! | GGAGCAGAAGTACCCCAAGA+AGG | - | chr7_1:79120767-79120786 | Msa1041540:CDS | 55.0% |
| GGAGGTTCCTCCTTTGCCCA+AGG | - | chr7_1:79118497-79118516 | Msa1041540:intron | 60.0% | |
| GCGTCCCTCCGTTGTTACAC+TGG | + | chr7_1:79119583-79119602 | None:intergenic | 60.0% | |
| GCGTCCCTCCGTTGTTACAG+TGG | + | chr7_1:79119622-79119641 | None:intergenic | 60.0% | |
| GTAAAGTTCGGGCGGAGAGC+AGG | - | chr7_1:79120285-79120304 | Msa1041540:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 79117781 | 79121187 | 79117781 | ID=Msa1041540;Name=Msa1041540 |
| chr7_1 | mRNA | 79117781 | 79121187 | 79117781 | ID=Msa1041540-mRNA-1;Parent=Msa1041540;Name=Msa1041540-mRNA-1;_AED=0.13;_eAED=0.13;_QI=180|1|0.8|1|0.5|0.6|5|466|372 |
| chr7_1 | exon | 79117781 | 79118239 | 79117781 | ID=Msa1041540-mRNA-1:exon:21299;Parent=Msa1041540-mRNA-1 |
| chr7_1 | exon | 79118615 | 79118712 | 79118615 | ID=Msa1041540-mRNA-1:exon:21298;Parent=Msa1041540-mRNA-1 |
| chr7_1 | exon | 79119200 | 79119507 | 79119200 | ID=Msa1041540-mRNA-1:exon:21297;Parent=Msa1041540-mRNA-1 |
| chr7_1 | exon | 79119846 | 79120007 | 79119846 | ID=Msa1041540-mRNA-1:exon:21296;Parent=Msa1041540-mRNA-1 |
| chr7_1 | exon | 79120450 | 79121187 | 79120450 | ID=Msa1041540-mRNA-1:exon:21295;Parent=Msa1041540-mRNA-1 |
| chr7_1 | five_prime_UTR | 79121008 | 79121187 | 79121008 | ID=Msa1041540-mRNA-1:five_prime_utr;Parent=Msa1041540-mRNA-1 |
| chr7_1 | CDS | 79120450 | 79121007 | 79120450 | ID=Msa1041540-mRNA-1:cds;Parent=Msa1041540-mRNA-1 |
| chr7_1 | CDS | 79119846 | 79120007 | 79119846 | ID=Msa1041540-mRNA-1:cds;Parent=Msa1041540-mRNA-1 |
| chr7_1 | CDS | 79119200 | 79119507 | 79119200 | ID=Msa1041540-mRNA-1:cds;Parent=Msa1041540-mRNA-1 |
| chr7_1 | CDS | 79118622 | 79118712 | 79118622 | ID=Msa1041540-mRNA-1:cds;Parent=Msa1041540-mRNA-1 |
| chr7_1 | three_prime_UTR | 79118615 | 79118621 | 79118615 | ID=Msa1041540-mRNA-1:three_prime_utr;Parent=Msa1041540-mRNA-1 |
| chr7_1 | three_prime_UTR | 79117781 | 79118239 | 79117781 | ID=Msa1041540-mRNA-1:three_prime_utr;Parent=Msa1041540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
