AlfalfaGEDB | Msa1166390

M. sativa cultivar zhongmu-4 / Msa1166390

KEGG: -
GO: GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043565 GO:0044212 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00643.27

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166390	XP_003625866.1	96.505	372	13	0	65	436	1	372	0.0	748

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166390	sp\|O82256\|COL13_ARATH	46.006	363	148	9	78	433	7	328	2.18e-93	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166390	G7KQZ2	96.505	372	13	0	65	436	1	372	0.0	748

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TFs/TRs:

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Gene ID	Type	Classification
Msa1166390	TF	C2C2-CO-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010760	Msa1166390	0.816088	6.621500e-52	-8.615850e-47
Msa0138220	Msa1166390	0.826896	2.109760e-54	-8.615850e-47
Msa0183410	Msa1166390	0.827082	1.903534e-54	-8.615850e-47
Msa0433530	Msa1166390	0.802639	5.098752e-49	-8.615850e-47
Msa1041540	Msa1166390	0.949289	1.718801e-107	-8.615850e-47
Msa1166390	Msa1348600	0.804730	1.877445e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166390	MtrunA17_Chr7g0268691	96.505	372	13	0	65	436	1	372	0.0	748
Msa1166390	MtrunA17_Chr1g0150471	28.531	354	186	14	84	433	6	296	4.29e-30	119
Msa1166390	MtrunA17_Chr3g0120711	50.000	100	50	0	84	183	5	104	2.43e-29	118
Msa1166390	MtrunA17_Chr3g0120711	55.000	60	24	1	374	433	339	395	4.00e-12	67.8
Msa1166390	MtrunA17_Chr7g0251781	45.255	137	57	4	83	212	4	129	1.01e-28	116
Msa1166390	MtrunA17_Chr7g0251781	52.239	67	32	0	367	433	316	382	9.21e-14	72.4
Msa1166390	MtrunA17_Chr5g0429341	48.515	101	51	1	84	183	5	105	1.35e-28	116
Msa1166390	MtrunA17_Chr2g0322941	45.000	100	54	1	84	183	44	142	1.97e-21	92.8
Msa1166390	MtrunA17_Chr1g0209071	37.736	106	64	1	82	187	3	106	2.84e-20	91.7
Msa1166390	MtrunA17_Chr7g0220721	36.283	113	64	3	82	190	24	132	1.52e-18	87.0

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1166390	AT2G47890.1	46.006	363	148	9	78	433	7	328	2.22e-94	288
Msa1166390	AT2G47890.3	42.136	337	147	9	78	407	7	302	2.26e-75	238
Msa1166390	AT2G47890.2	51.163	215	81	3	78	291	7	198	6.90e-71	224
Msa1166390	AT1G28050.1	36.735	196	100	6	83	273	8	184	9.04e-34	131
Msa1166390	AT1G28050.1	50.725	69	33	1	366	433	358	426	3.71e-13	71.2
Msa1166390	AT2G33500.1	51.351	111	53	1	83	192	11	121	2.97e-33	129
Msa1166390	AT2G33500.1	39.831	118	63	2	322	433	283	398	3.23e-15	77.4
Msa1166390	AT2G33500.2	51.351	111	53	1	83	192	11	121	3.23e-33	129
Msa1166390	AT2G33500.2	41.525	118	60	3	322	433	283	397	1.81e-15	78.2
Msa1166390	AT5G48250.1	46.226	106	54	1	84	186	5	110	1.42e-28	116

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Find 134 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATTCTGTATCTTCTGC+TGG	0.403504	7_4:+58502292	Msa1166390:CDS
AAACCTGTAGATAAATTTGC+CGG	0.458844	7_4:-58501807	None:intergenic
AAAGGGATTCTGCATTATTA+CGG	0.421974	7_4:+58502467	Msa1166390:CDS
AAATAGTCATAATATTTATT+GGG	0.324041	7_4:-58503650	None:intergenic
AAATGTGAGGAGAAAAGGTT+AGG	0.478482	7_4:-58500657	None:intergenic
AACATTCTGTATCTTCTGCT+GGG	0.457746	7_4:+58502293	Msa1166390:CDS
AAGATAGAGCACTGAAATCA+TGG	0.483808	7_4:+58503079	Msa1166390:exon
AAGCACAAGTTGTTGAAGTG+AGG	0.641309	7_4:-58500557	None:intergenic
AAGGTGCTTATGTTTGGGCA+AGG	0.567565	7_4:+58503592	Msa1166390:three_prime_UTR
AAGGTTAGGTAGGTGGAATG+AGG	0.544592	7_4:-58500643	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTGTCTGATATGTTTGTTT+GGG	+	chr7_4:58501164-58501183	Msa1166390:CDS	30.0%
TTCTCATAATTATCGTGCTA+TGG	+	chr7_4:58501236-58501255	Msa1166390:CDS	30.0%
TCAGATCTTGATCATAAACA+AGG	+	chr7_4:58501388-58501407	Msa1166390:intron	30.0%
GAAACAAACCCTAAGTAATT+TGG	+	chr7_4:58501554-58501573	Msa1166390:intron	30.0%
TTCAACTCAAGTGGTTAAAA+GGG	-	chr7_4:58501622-58501641	None:intergenic	30.0%
GTTATTGAAACAGAATCGTA+AGG	+	chr7_4:58501695-58501714	Msa1166390:intron	30.0%
AAACCTGTAGATAAATTTGC+CGG	-	chr7_4:58501810-58501829	None:intergenic	30.0%
TGATATTGTTCCTTCAAATG+AGG	+	chr7_4:58501848-58501867	Msa1166390:CDS	30.0%
ATAGGAGCAATCAAAAAAGA+GGG	-	chr7_4:58502056-58502075	None:intergenic	30.0%
TTACCAAAAAGAGTGAAGAT+AGG	-	chr7_4:58502074-58502093	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_4	gene	58500529	58503936	58500529	ID=Msa1166390;Name=Msa1166390
chr7_4	mRNA	58500529	58503936	58500529	ID=Msa1166390-mRNA-1;Parent=Msa1166390;Name=Msa1166390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0\|1\|0.6\|1\|0.5\|0.8\|5\|466\|436
chr7_4	exon	58500529	58501278	58500529	ID=Msa1166390-mRNA-1:exon:17955;Parent=Msa1166390-mRNA-1
chr7_4	exon	58501708	58501869	58501708	ID=Msa1166390-mRNA-1:exon:17956;Parent=Msa1166390-mRNA-1
chr7_4	exon	58502208	58502515	58502208	ID=Msa1166390-mRNA-1:exon:17957;Parent=Msa1166390-mRNA-1
chr7_4	exon	58503003	58503100	58503003	ID=Msa1166390-mRNA-1:exon:17958;Parent=Msa1166390-mRNA-1
chr7_4	exon	58503478	58503936	58503478	ID=Msa1166390-mRNA-1:exon:17959;Parent=Msa1166390-mRNA-1
chr7_4	CDS	58500529	58501278	58500529	ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4	CDS	58501708	58501869	58501708	ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4	CDS	58502208	58502515	58502208	ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4	CDS	58503003	58503093	58503003	ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4	three_prime_UTR	58503094	58503100	58503094	ID=Msa1166390-mRNA-1:three_prime_utr;Parent=Msa1166390-mRNA-1
chr7_4	three_prime_UTR	58503478	58503936	58503478	ID=Msa1166390-mRNA-1:three_prime_utr;Parent=Msa1166390-mRNA-1

Gene Sequence

>Msa1166390

ATGACAACAAAAATGTCAATTCCATTATCCTCACTTCAACAACTTGTGCTTGCTCTCCAAGAAATGAATGAGTCACATGCCAAATCCTCTTTTGCCACTCTCTTCAAACCATATCCTCATTCCACCTACCTAACCTTTTCTCCTCACATTTTCTCTCATCTCTCTCTCACACACTCTCTCTTAAACCACACCATGGGTGGTTCTCCTAGAAACCCTAACCCTAACCCTTCACACAAACTATTTCGACCTTGTGATTATTGTGGCAATTCAAACGCAGTTATATACTGCAGAGCAGATTCAGCCAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAATCAACTCTTCTCTAAGCACACACGCTCCTTAATCTGTGATTCATGCGATGATTCACCTGCTACTATACTCTGTTCTACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGCCTCTTGAGGGTTTTACAGGGTGCCCTTCAGTTACTGAGCTTTTGTCGATTCTGGGTTTGCAGGATATTGGAAAAAAATCTTTGCTTTTGCCTCAGGAAAGTGTAGGAGATGGGTTTGTTGGGTATGAGATTGAAGGACTGTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGACGATCTTATTTCTTCTTCTCCTTCTTCTCATAATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGTAGACACAGAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAATATATACCACCGGCAAATTTATCTACAGGTTTTGATTGCGATGTAAAGGCTGATATTGTTCCTTCAAATGAGTGGCTCAGAGAAAGTAGCGAGCCTATGCATCAAGTTGTTCCTGTTGATACATCCTTCAAAGCTCACACCGAAGAAATTTCACTTAAACATTCTGTATCTTCTGCTGGGGAGCCTCATACCCAGTGTAACAACGGAGGGACGCCTTCAGAATCTCTCAACCACTGTAACAACGGAGGGACGCCTTCAGAGTATCTCAAGTCTGAAACCTTGTCAACTACTCCTAAAGCCGTTCCTTCTCCATATGAGTTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGAGCAGGACAAGAGTTAAGGGCCGATTTGCCAAGATAGAGCACTGA

Protein sequence

>Msa1166390

MTTKMSIPLSSLQQLVLALQEMNESHAKSSFATLFKPYPHSTYLTFSPHIFSHLSLTHSLLNHTMGGSPRNPNPNPSHKLFRPCDYCGNSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHNYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEPYDPEEYIPPANLSTGFDCDVKADIVPSNEWLRESSEPMHQVVPVDTSFKAHTEEISLKHSVSSAGEPHTQCNNGGTPSESLNHCNNGGTPSEYLKSETLSTTPKAVPSPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIEH*