AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1166390

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166390 MtrunA17_Chr7g0268691 96.505 372 13 0 65 436 1 372 0.0 748
Msa1166390 MtrunA17_Chr1g0150471 28.531 354 186 14 84 433 6 296 4.29e-30 119
Msa1166390 MtrunA17_Chr3g0120711 50.000 100 50 0 84 183 5 104 2.43e-29 118
Msa1166390 MtrunA17_Chr3g0120711 55.000 60 24 1 374 433 339 395 4.00e-12 67.8
Msa1166390 MtrunA17_Chr7g0251781 45.255 137 57 4 83 212 4 129 1.01e-28 116
Msa1166390 MtrunA17_Chr7g0251781 52.239 67 32 0 367 433 316 382 9.21e-14 72.4
Msa1166390 MtrunA17_Chr5g0429341 48.515 101 51 1 84 183 5 105 1.35e-28 116
Msa1166390 MtrunA17_Chr2g0322941 45.000 100 54 1 84 183 44 142 1.97e-21 92.8
Msa1166390 MtrunA17_Chr1g0209071 37.736 106 64 1 82 187 3 106 2.84e-20 91.7
Msa1166390 MtrunA17_Chr7g0220721 36.283 113 64 3 82 190 24 132 1.52e-18 87.0
Msa1166390 MtrunA17_Chr3g0136701 40.449 89 52 1 84 171 6 94 1.76e-17 82.4
Msa1166390 MtrunA17_Chr4g0072871 40.449 89 52 1 84 171 22 110 2.12e-17 83.6
Msa1166390 MtrunA17_Chr4g0072871 41.176 68 40 0 366 433 272 339 1.84e-11 65.5
Msa1166390 MtrunA17_Chr4g0033641 43.478 92 42 2 84 165 5 96 9.82e-16 76.6
Msa1166390 MtrunA17_Chr1g0155811 35.354 99 53 2 84 171 5 103 1.58e-13 70.5
Msa1166390 MtrunA17_Chr5g0405151 38.750 80 41 1 84 155 5 84 2.72e-13 68.2
Msa1166390 MtrunA17_Chr2g0329511 41.304 92 44 2 84 165 5 96 3.36e-13 69.3
Msa1166390 MtrunA17_Chr2g0322951 63.636 44 16 0 390 433 90 133 4.44e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1166390 AT2G47890.1 46.006 363 148 9 78 433 7 328 2.22e-94 288
Msa1166390 AT2G47890.3 42.136 337 147 9 78 407 7 302 2.26e-75 238
Msa1166390 AT2G47890.2 51.163 215 81 3 78 291 7 198 6.90e-71 224
Msa1166390 AT1G28050.1 36.735 196 100 6 83 273 8 184 9.04e-34 131
Msa1166390 AT1G28050.1 50.725 69 33 1 366 433 358 426 3.71e-13 71.2
Msa1166390 AT2G33500.1 51.351 111 53 1 83 192 11 121 2.97e-33 129
Msa1166390 AT2G33500.1 39.831 118 63 2 322 433 283 398 3.23e-15 77.4
Msa1166390 AT2G33500.2 51.351 111 53 1 83 192 11 121 3.23e-33 129
Msa1166390 AT2G33500.2 41.525 118 60 3 322 433 283 397 1.81e-15 78.2
Msa1166390 AT5G48250.1 46.226 106 54 1 84 186 5 110 1.42e-28 116
Msa1166390 AT3G07650.3 42.623 122 59 3 84 194 5 126 2.56e-26 109
Msa1166390 AT3G07650.2 42.623 122 59 3 84 194 5 126 2.56e-26 109
Msa1166390 AT3G07650.4 42.623 122 59 3 84 194 5 126 2.56e-26 109
Msa1166390 AT3G07650.1 42.623 122 59 3 84 194 5 126 2.56e-26 109
Msa1166390 AT3G21880.3 47.423 97 50 1 84 180 9 104 1.67e-21 95.9
Msa1166390 AT3G21880.2 47.423 97 50 1 84 180 9 104 1.67e-21 95.9
Msa1166390 AT3G21880.1 47.423 97 50 1 84 180 5 100 1.69e-21 95.9
Msa1166390 AT1G68190.2 38.679 106 64 1 82 187 41 145 2.61e-20 92.8
Msa1166390 AT1G68190.1 38.679 106 64 1 82 187 12 116 2.85e-20 92.0
Msa1166390 AT1G68190.3 38.679 106 64 1 82 187 12 116 2.85e-20 92.0
Msa1166390 AT4G15250.1 42.000 100 57 1 84 183 5 103 4.30e-20 91.3
Msa1166390 AT5G15840.1 43.011 93 52 1 82 173 18 110 1.18e-19 90.5
Msa1166390 AT5G15840.2 43.011 93 52 1 82 173 18 110 2.09e-19 88.2
Msa1166390 AT3G02380.1 40.000 95 56 1 75 168 7 101 4.45e-18 85.5
Msa1166390 AT3G02380.1 60.417 48 19 0 386 433 272 319 2.86e-11 65.1
Msa1166390 AT5G15850.1 43.023 86 48 1 84 168 12 97 4.87e-18 85.5
Msa1166390 AT5G15850.1 35.075 134 66 5 316 433 199 327 2.49e-11 65.5
Msa1166390 AT5G24930.1 40.449 89 52 1 84 171 6 94 6.39e-18 85.5
Msa1166390 AT5G24930.1 52.632 57 23 1 377 433 284 336 8.11e-11 63.9
Msa1166390 AT2G24790.1 39.560 91 54 1 82 171 6 96 7.05e-18 84.3
Msa1166390 AT2G24790.2 39.560 91 54 1 82 171 6 96 8.88e-18 82.4
Msa1166390 AT5G57660.1 39.560 91 50 2 82 171 20 106 1.77e-17 84.0
Msa1166390 AT4G38960.1 40.000 80 40 1 84 155 5 84 9.14e-13 67.0
Msa1166390 AT4G38960.6 40.000 80 40 1 84 155 5 84 9.14e-13 67.0
Msa1166390 AT1G75540.1 35.000 100 52 2 84 170 5 104 3.79e-12 67.8
Msa1166390 AT2G21320.1 38.750 80 41 1 84 155 5 84 3.84e-12 65.1
Msa1166390 AT2G31380.1 36.170 94 51 1 84 168 5 98 1.74e-11 64.3

Find 134 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCGATATATCACTCTGATTT+TGG 0.166869 7_4:+58503699 Msa1166390:three_prime_UTR
TAAATAGTCATAATATTTAT+TGG 0.170269 7_4:-58503651 None:intergenic
CATGTGACTCATTCATTTCT+TGG 0.181063 7_4:-58500585 None:intergenic
CCATGTAAAGTTGTAGTTCT+AGG 0.239739 7_4:+58503820 Msa1166390:three_prime_UTR
GGGTTAGGGTTAGGGTTTCT+AGG 0.248419 7_4:-58500733 None:intergenic
CAGTTTCTTATATTATATTA+TGG 0.248631 7_4:+58503475 Msa1166390:intron
TTGTGTGAAGGGTTAGGGTT+AGG 0.274503 7_4:-58500742 None:intergenic
ATTATGACTATTTAGTTTAT+CGG 0.286559 7_4:+58503660 Msa1166390:three_prime_UTR
ATCGCATGAATCACAGATTA+AGG 0.318847 7_4:-58500899 None:intergenic
ATTCTGGGTTTGCAGGATAT+TGG 0.319782 7_4:+58501075 Msa1166390:CDS
GCCGGTGGTATATATTCTTC+AGG 0.319793 7_4:-58501789 None:intergenic
AGGTAGGTGGAATGAGGATA+TGG 0.320898 7_4:-58500637 None:intergenic
TAGCAAAATGCTTCCTTCTT+GGG 0.321320 7_4:-58503529 None:intergenic
TATGGAGAAGGAACGGCTTT+AGG 0.323731 7_4:-58502427 None:intergenic
AAATAGTCATAATATTTATT+GGG 0.324041 7_4:-58503650 None:intergenic
CTAGCAAAATGCTTCCTTCT+TGG 0.324663 7_4:-58503530 None:intergenic
GACTGTCTGATATGTTTGTT+TGG 0.326886 7_4:+58501163 Msa1166390:CDS
GCTTGGAAGGTGCTTATGTT+TGG 0.334046 7_4:+58503586 Msa1166390:three_prime_UTR
ACAGATATGACAAGCATATA+AGG 0.340161 7_4:+58502999 Msa1166390:intron
TCTTGACTTGCTAACTCATA+TGG 0.342545 7_4:-58502445 None:intergenic
ATAGTACATGATTGTAAATT+CGG 0.343940 7_4:-58503780 None:intergenic
AATAGTTTGTGTGAAGGGTT+AGG 0.348641 7_4:-58500748 None:intergenic
CTTGGAAGGTGCTTATGTTT+GGG 0.352531 7_4:+58503587 Msa1166390:three_prime_UTR
TGTGTGAAGGGTTAGGGTTA+GGG 0.355224 7_4:-58500741 None:intergenic
GAGAGTGGCAAAAGAGGATT+TGG 0.355929 7_4:-58500608 None:intergenic
AGTGTAGGAGATGGGTTTGT+TGG 0.360731 7_4:+58501126 Msa1166390:CDS
TTCTTCGGTGTGAGCTTTGA+AGG 0.363654 7_4:-58502260 None:intergenic
TATATATTCTTCAGGATCAT+AGG 0.369594 7_4:-58501781 None:intergenic
ATGATTTCAGTGCTCTATCT+TGG 0.379435 7_4:-58503077 None:intergenic
GGAGAGCAGGACAAGAGTTA+AGG 0.397226 7_4:+58503045 Msa1166390:CDS
AAACATTCTGTATCTTCTGC+TGG 0.403504 7_4:+58502292 Msa1166390:CDS
CTTAGAGAAGAGTTGATTTG+TGG 0.405751 7_4:-58500866 None:intergenic
TTTGTCGATTCTGGGTTTGC+AGG 0.409347 7_4:+58501068 Msa1166390:CDS
AGTTGTTGAAGTGAGGATAA+TGG 0.415599 7_4:-58500550 None:intergenic
GTGTAGGAGATGGGTTTGTT+GGG 0.419510 7_4:+58501127 Msa1166390:CDS
AAAGGGATTCTGCATTATTA+CGG 0.421974 7_4:+58502467 Msa1166390:CDS
AGAGAAAATGTGAGGAGAAA+AGG 0.424988 7_4:-58500662 None:intergenic
GCGTCCCTCCGTTGTTACAC+TGG 0.441856 7_4:-58502327 None:intergenic
GTATGAATCACGTAAAGTTC+GGG 0.445996 7_4:+58503021 Msa1166390:CDS
CCTAGAACTACAACTTTACA+TGG 0.447581 7_4:-58503820 None:intergenic
GGTATGAATCACGTAAAGTT+CGG 0.449433 7_4:+58503020 Msa1166390:CDS
CCACCGGCAAATTTATCTAC+AGG 0.455322 7_4:+58501804 Msa1166390:CDS
TTCTCATAATTATCGTGCTA+TGG 0.457659 7_4:+58501236 Msa1166390:CDS
AACATTCTGTATCTTCTGCT+GGG 0.457746 7_4:+58502293 Msa1166390:CDS
AAACCTGTAGATAAATTTGC+CGG 0.458844 7_4:-58501807 None:intergenic
GAGAGCAGGACAAGAGTTAA+GGG 0.458882 7_4:+58503046 Msa1166390:CDS
ACTGTCTGATATGTTTGTTT+GGG 0.461387 7_4:+58501164 Msa1166390:CDS
AGTGCTCTATCTTGGCAAAT+CGG 0.463266 7_4:-58503069 None:intergenic
AGAAGCATTACCTCATTTGA+AGG 0.463647 7_4:-58501858 None:intergenic
ATTATATTATGGAGCACCTA+TGG 0.465673 7_4:+58503486 Msa1166390:three_prime_UTR
ATAGTTTGTGTGAAGGGTTA+GGG 0.471313 7_4:-58500747 None:intergenic
CCGTTGTTACACTGGGTATG+AGG 0.476347 7_4:-58502319 None:intergenic
AAATGTGAGGAGAAAAGGTT+AGG 0.478482 7_4:-58500657 None:intergenic
ATGTTTAAGTGAAATTTCTT+CGG 0.479598 7_4:-58502275 None:intergenic
GTCACAAGAGAAACAGAGTT+TGG 0.482714 7_4:-58500830 None:intergenic
TTTGAAGAGAGTGGCAAAAG+AGG 0.482855 7_4:-58500614 None:intergenic
CATGAACGAAGGCCTCTTGA+GGG 0.483331 7_4:+58501015 Msa1166390:CDS
AAGATAGAGCACTGAAATCA+TGG 0.483808 7_4:+58503079 Msa1166390:exon
GTGAGGAGAAAAGGTTAGGT+AGG 0.492514 7_4:-58500653 None:intergenic
ATGAGTTAGCAAGTCAAGAA+AGG 0.496861 7_4:+58502449 Msa1166390:CDS
AGCAAAATGCTTCCTTCTTG+GGG 0.503535 7_4:-58503528 None:intergenic
GTAAAGTTCGGGCGGAGAGC+AGG 0.504523 7_4:+58503032 Msa1166390:CDS
GTCGAAATAGTTTGTGTGAA+GGG 0.509191 7_4:-58500753 None:intergenic
GCACGATAATTATGAGAAGA+AGG 0.510409 7_4:-58501231 None:intergenic
TCTTGAACCTGTAGCTTGGA+AGG 0.512199 7_4:+58503573 Msa1166390:three_prime_UTR
GCTTTGAAGGATGTATCAAC+AGG 0.514822 7_4:-58502247 None:intergenic
CTCAGGAAAGTGTAGGAGAT+GGG 0.521940 7_4:+58501118 Msa1166390:CDS
TCGTCAAGACTAACAAAAGA+AGG 0.524243 7_4:-58501192 None:intergenic
GTGAACCCTTGGATTGAAGT+TGG 0.528424 7_4:+58503900 Msa1166390:three_prime_UTR
TGAGTTAGCAAGTCAAGAAA+GGG 0.532628 7_4:+58502450 Msa1166390:CDS
TTTGTTGGGTATGAGATTGA+AGG 0.533817 7_4:+58501141 Msa1166390:CDS
ATAAGCACCTTCCAAGCTAC+AGG 0.535527 7_4:-58503580 None:intergenic
AGGAGAAAAGGTTAGGTAGG+TGG 0.537186 7_4:-58500650 None:intergenic
ATATATTCTTCAGGATCATA+GGG 0.544212 7_4:-58501780 None:intergenic
AAGGTTAGGTAGGTGGAATG+AGG 0.544592 7_4:-58500643 None:intergenic
TGGAGCACCTATGGTAGACT+TGG 0.545874 7_4:+58503495 Msa1166390:three_prime_UTR
CGTCCCTCCGTTGTTACACT+GGG 0.546187 7_4:-58502326 None:intergenic
TCATGAACGAAGGCCTCTTG+AGG 0.546653 7_4:+58501014 Msa1166390:CDS
CCTCAGGAAAGTGTAGGAGA+TGG 0.550053 7_4:+58501117 Msa1166390:CDS
GTTATTGAAACAGAATCGTA+AGG 0.552534 7_4:+58501695 Msa1166390:intron
TGATATTGTTCCTTCAAATG+AGG 0.553141 7_4:+58501848 Msa1166390:CDS
GCTCATCCAACTTCAATCCA+AGG 0.554047 7_4:-58503906 None:intergenic
GGAGGTTCCTCCTTTGCCCA+AGG 0.554443 7_4:+58501257 Msa1166390:CDS
TTTCGACCTTGTGATTATTG+TGG 0.554518 7_4:+58500769 Msa1166390:CDS
TTGTTCTTGAACCTGTAGCT+TGG 0.556762 7_4:+58503569 Msa1166390:three_prime_UTR
GTAGAACAGAGTATAGTAGC+AGG 0.559506 7_4:-58500928 None:intergenic
CTCTTAAACCACACCATGGG+TGG 0.560180 7_4:+58500706 Msa1166390:CDS
AGGATATGGTTTGAAGAGAG+TGG 0.565322 7_4:-58500623 None:intergenic
AAGGTGCTTATGTTTGGGCA+AGG 0.567565 7_4:+58503592 Msa1166390:three_prime_UTR
GAGAGATGAGAGAAAATGTG+AGG 0.568388 7_4:-58500670 None:intergenic
ACAGGAACAACTTGATGCAT+AGG 0.575038 7_4:-58502229 None:intergenic
GACAAAAGCTCAGTAACTGA+AGG 0.575937 7_4:-58501051 None:intergenic
ATGAATTATACCTTGGGCAA+AGG 0.577881 7_4:-58501267 None:intergenic
AATTATACCTTGGGCAAAGG+AGG 0.579881 7_4:-58501264 None:intergenic
GGTCGAAATAGTTTGTGTGA+AGG 0.583503 7_4:-58500754 None:intergenic
GATTTGTGGAGTGAACTTCA+CGG 0.583624 7_4:-58500852 None:intergenic
GCGTCCCTCCGTTGTTACAG+TGG 0.590695 7_4:-58502366 None:intergenic
CTCATCCAACTTCAATCCAA+GGG 0.592717 7_4:-58503905 None:intergenic
TCCTGAAGAATATATACCAC+CGG 0.595306 7_4:+58501788 Msa1166390:CDS
TAGGAGAACCACCCATGGTG+TGG 0.595775 7_4:-58500714 None:intergenic
TCTCTCAACCACTGTAACAA+CGG 0.600835 7_4:+58502358 Msa1166390:CDS
TCATAATTATCGTGCTATGG+AGG 0.601458 7_4:+58501239 Msa1166390:CDS
CTTGCTAACTCATATGGAGA+AGG 0.601483 7_4:-58502439 None:intergenic
CATGAGGTGAAGATAGTGAA+AGG 0.604807 7_4:-58500996 None:intergenic
TCAACCACTGTAACAACGGA+GGG 0.607091 7_4:+58502362 Msa1166390:CDS
AGGAGTCATATACTTCATCC+TGG 0.608350 7_4:+58503612 Msa1166390:three_prime_UTR
AGCAAAAGAAGAAAACAAGA+AGG 0.608996 7_4:+58502494 Msa1166390:CDS
GGAGCAGAAGTACCCCAAGA+AGG 0.610072 7_4:+58503516 Msa1166390:three_prime_UTR
TTCTGCTCCAAGTCTACCAT+AGG 0.619233 7_4:-58503502 None:intergenic
TCAAGAGGCCTTCGTTCATG+AGG 0.621272 7_4:-58501012 None:intergenic
CAGAATCGTAAGGCTGCTTG+TGG 0.621356 7_4:+58501705 Msa1166390:intron
CTCTCTCTTAAACCACACCA+TGG 0.624493 7_4:+58500702 Msa1166390:CDS
TTTCTGTCAAAACTGTGACT+GGG 0.626975 7_4:+58500963 Msa1166390:CDS
ACATTCTGTATCTTCTGCTG+GGG 0.636591 7_4:+58502294 Msa1166390:CDS
ATACCCAGTGTAACAACGGA+GGG 0.637441 7_4:+58502323 Msa1166390:CDS
AAGCACAAGTTGTTGAAGTG+AGG 0.641309 7_4:-58500557 None:intergenic
GGCTTTAGGAGTAGTTGACA+AGG 0.642101 7_4:-58502413 None:intergenic
CACCCTGTAAAACCCTCAAG+AGG 0.645981 7_4:-58501027 None:intergenic
ACAAAAGCTCAGTAACTGAA+GGG 0.647464 7_4:-58501050 None:intergenic
TTGACAAAATCACAATGACA+CGG 0.648433 7_4:-58503752 None:intergenic
TCAGACTTGAGATACTCTGA+AGG 0.649177 7_4:-58502388 None:intergenic
CTCAACCACTGTAACAACGG+AGG 0.655253 7_4:+58502361 Msa1166390:CDS
TAACTCATATGGAGAAGGAA+CGG 0.655311 7_4:-58502434 None:intergenic
TCTCTCTTAAACCACACCAT+GGG 0.656520 7_4:+58500703 Msa1166390:CDS
CCTGTAGATAAATTTGCCGG+TGG 0.659097 7_4:-58501804 None:intergenic
CCTCATACCCAGTGTAACAA+CGG 0.666009 7_4:+58502319 Msa1166390:CDS
CAGTGGTTGAGAGATTCTGA+AGG 0.668190 7_4:-58502349 None:intergenic
AGCACATTTATAAAACTCAG+AGG 0.678646 7_4:-58503847 None:intergenic
GAATTGCCACAATAATCACA+AGG 0.683272 7_4:-58500775 None:intergenic
TGAATCACGTAAAGTTCGGG+CGG 0.683457 7_4:+58503024 Msa1166390:CDS
CCATCTCCTACACTTTCCTG+AGG 0.685251 7_4:-58501117 None:intergenic
TATCTTCACCTCATGAACGA+AGG 0.697940 7_4:+58501004 Msa1166390:CDS
CATACCCAGTGTAACAACGG+AGG 0.713642 7_4:+58502322 Msa1166390:CDS
GTTTCTAGGAGAACCACCCA+TGG 0.721828 7_4:-58500719 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGTCATAATATTTATT+GGG - chr7_4:58503653-58503672 None:intergenic 10.0%
!! TAAATAGTCATAATATTTAT+TGG - chr7_4:58503654-58503673 None:intergenic 10.0%
!! CTCAAATAAAATATATCAAA+AGG - chr7_4:58502702-58502721 None:intergenic 15.0%
!! GCATATATATAAATAAAATG+CGG - chr7_4:58503449-58503468 None:intergenic 15.0%
!! CAGTTTCTTATATTATATTA+TGG + chr7_4:58503475-58503494 Msa1166390:intron 15.0%
!!! ATTATGACTATTTAGTTTAT+CGG + chr7_4:58503660-58503679 Msa1166390:three_prime_UTR 15.0%
!! AATTTAAAAACAGAGAAAGA+AGG - chr7_4:58501306-58501325 None:intergenic 20.0%
!!! GAAATTCATTTTGTCTTTTT+AGG + chr7_4:58501334-58501353 Msa1166390:intron 20.0%
!!! AGATGATTAGTTTTTGTTTT+TGG + chr7_4:58501446-58501465 Msa1166390:intron 20.0%
!!! TAGTTTTTGTTTTTGGATTT+TGG + chr7_4:58501453-58501472 Msa1166390:intron 20.0%
!!! TTTTAATTCTCTGATTCTTA+GGG + chr7_4:58501531-58501550 Msa1166390:intron 20.0%
!! AAACATTAAAAGGTTGAAAA+TGG - chr7_4:58501951-58501970 None:intergenic 20.0%
!! ACACACAAATAAACATTAAA+AGG - chr7_4:58501961-58501980 None:intergenic 20.0%
!! ATGTTTAAGTGAAATTTCTT+CGG - chr7_4:58502278-58502297 None:intergenic 20.0%
!!! ATTTTATTTGAGAGATATCA+AGG + chr7_4:58502710-58502729 Msa1166390:intron 20.0%
!!! TGTTTTTCATGTAAATACAT+GGG - chr7_4:58502979-58502998 None:intergenic 20.0%
!!! TTGTTTTTCATGTAAATACA+TGG - chr7_4:58502980-58502999 None:intergenic 20.0%
!! ATAGTACATGATTGTAAATT+CGG - chr7_4:58503783-58503802 None:intergenic 20.0%
! TTATCCATGAATTATACCTT+GGG - chr7_4:58501276-58501295 None:intergenic 25.0%
! ATTATCCATGAATTATACCT+TGG - chr7_4:58501277-58501296 None:intergenic 25.0%
!!! GTTTTAATTCTCTGATTCTT+AGG + chr7_4:58501530-58501549 Msa1166390:intron 25.0%
! TTTAATTCTCTGATTCTTAG+GGG + chr7_4:58501532-58501551 Msa1166390:intron 25.0%
!!! TGGTTAAAAGGGTTTTTTTT+GGG - chr7_4:58501611-58501630 None:intergenic 25.0%
! ATATATTCTTCAGGATCATA+GGG - chr7_4:58501783-58501802 None:intergenic 25.0%
! TATATATTCTTCAGGATCAT+AGG - chr7_4:58501784-58501803 None:intergenic 25.0%
! AAAACAAGAAATCCATTATC+AGG - chr7_4:58501924-58501943 None:intergenic 25.0%
! AAAAGAGGGAAAAATAAACA+AGG - chr7_4:58502042-58502061 None:intergenic 25.0%
! TAGTAATGTTATCATTTCAG+TGG + chr7_4:58502188-58502207 Msa1166390:intron 25.0%
! ATATTCAATGTCTTGAAGTA+TGG - chr7_4:58502548-58502567 None:intergenic 25.0%
! AAATTGAAGAAGTTCAATGT+AGG + chr7_4:58502772-58502791 Msa1166390:intron 25.0%
!! TCTTTGCAATTTTCAAATGA+TGG + chr7_4:58502878-58502897 Msa1166390:intron 25.0%
!! GTTTTTCATGTAAATACATG+GGG - chr7_4:58502978-58502997 None:intergenic 25.0%
! AACAACTTAACGAAAATTCT+TGG + chr7_4:58503113-58503132 Msa1166390:intron 25.0%
! ATAAGTTCACTATACAACAA+GGG - chr7_4:58503167-58503186 None:intergenic 25.0%
! AATAAGTTCACTATACAACA+AGG - chr7_4:58503168-58503187 None:intergenic 25.0%
! AAAAAAACAGAACTGTTATG+TGG - chr7_4:58503345-58503364 None:intergenic 25.0%
!!! TAACTTTTGTAGTTTTAGCT+GGG + chr7_4:58503389-58503408 Msa1166390:intron 25.0%
! TATATAAATAAAATGCGGAC+AGG - chr7_4:58503444-58503463 None:intergenic 25.0%
!!! ATTTTGGCAAAACATGTATT+TGG + chr7_4:58503715-58503734 Msa1166390:three_prime_UTR 25.0%
!! TTTTGGCAAAACATGTATTT+GGG + chr7_4:58503716-58503735 Msa1166390:three_prime_UTR 25.0%
ACTGTCTGATATGTTTGTTT+GGG + chr7_4:58501164-58501183 Msa1166390:CDS 30.0%
TTCTCATAATTATCGTGCTA+TGG + chr7_4:58501236-58501255 Msa1166390:CDS 30.0%
TCAGATCTTGATCATAAACA+AGG + chr7_4:58501388-58501407 Msa1166390:intron 30.0%
! TTTTTGGATTTTGGACTGTT+TGG + chr7_4:58501462-58501481 Msa1166390:intron 30.0%
GAAACAAACCCTAAGTAATT+TGG + chr7_4:58501554-58501573 Msa1166390:intron 30.0%
!!! TTTTTTTTGGGGTGGTTAAA+GGG - chr7_4:58501599-58501618 None:intergenic 30.0%
!!! GGTTAAAAGGGTTTTTTTTG+GGG - chr7_4:58501610-58501629 None:intergenic 30.0%
!!! GTGGTTAAAAGGGTTTTTTT+TGG - chr7_4:58501612-58501631 None:intergenic 30.0%
TTCAACTCAAGTGGTTAAAA+GGG - chr7_4:58501622-58501641 None:intergenic 30.0%
! TTCAATTTGTTCAACTCAAG+TGG - chr7_4:58501631-58501650 None:intergenic 30.0%
!! GCTGCAATTTTAACATATTC+TGG + chr7_4:58501665-58501684 Msa1166390:intron 30.0%
GTTATTGAAACAGAATCGTA+AGG + chr7_4:58501695-58501714 Msa1166390:intron 30.0%
AAACCTGTAGATAAATTTGC+CGG - chr7_4:58501810-58501829 None:intergenic 30.0%
TGATATTGTTCCTTCAAATG+AGG + chr7_4:58501848-58501867 Msa1166390:CDS 30.0%
ATAGGAGCAATCAAAAAAGA+GGG - chr7_4:58502056-58502075 None:intergenic 30.0%
TTACCAAAAAGAGTGAAGAT+AGG - chr7_4:58502074-58502093 None:intergenic 30.0%
AAATTAGAATAACAACCACC+TGG - chr7_4:58502129-58502148 None:intergenic 30.0%
AAAGGGATTCTGCATTATTA+CGG + chr7_4:58502467-58502486 Msa1166390:CDS 30.0%
AGCAAAAGAAGAAAACAAGA+AGG + chr7_4:58502494-58502513 Msa1166390:CDS 30.0%
! TGATCACTGGATATTTTCAT+TGG + chr7_4:58502671-58502690 Msa1166390:intron 30.0%
! TGCAATTTTCAAATGATGGT+TGG + chr7_4:58502882-58502901 Msa1166390:intron 30.0%
ACAGATATGACAAGCATATA+AGG + chr7_4:58502999-58503018 Msa1166390:intron 30.0%
TCTGATAATACTACTGTCAA+CGG - chr7_4:58503270-58503289 None:intergenic 30.0%
!!! ATTATCAGATTTGTTTTGCC+TGG + chr7_4:58503281-58503300 Msa1166390:intron 30.0%
!!! CTAACTTTTGTAGTTTTAGC+TGG + chr7_4:58503388-58503407 Msa1166390:intron 30.0%
!!! AACTTTTGTAGTTTTAGCTG+GGG + chr7_4:58503390-58503409 Msa1166390:intron 30.0%
! ATTATATTATGGAGCACCTA+TGG + chr7_4:58503486-58503505 Msa1166390:three_prime_UTR 30.0%
TTGACAAAATCACAATGACA+CGG - chr7_4:58503755-58503774 None:intergenic 30.0%
AGCACATTTATAAAACTCAG+AGG - chr7_4:58503850-58503869 None:intergenic 30.0%
!!! CACACTTTTTCTTCTCTTTT+TGG - chr7_4:58503883-58503902 None:intergenic 30.0%
AGTTGTTGAAGTGAGGATAA+TGG - chr7_4:58500553-58500572 None:intergenic 35.0%
CATGTGACTCATTCATTTCT+TGG - chr7_4:58500588-58500607 None:intergenic 35.0%
AAATGTGAGGAGAAAAGGTT+AGG - chr7_4:58500660-58500679 None:intergenic 35.0%
AGAGAAAATGTGAGGAGAAA+AGG - chr7_4:58500665-58500684 None:intergenic 35.0%
! ATAGTTTGTGTGAAGGGTTA+GGG - chr7_4:58500750-58500769 None:intergenic 35.0%
! AATAGTTTGTGTGAAGGGTT+AGG - chr7_4:58500751-58500770 None:intergenic 35.0%
! GTCGAAATAGTTTGTGTGAA+GGG - chr7_4:58500756-58500775 None:intergenic 35.0%
TTTCGACCTTGTGATTATTG+TGG + chr7_4:58500769-58500788 Msa1166390:CDS 35.0%
GAATTGCCACAATAATCACA+AGG - chr7_4:58500778-58500797 None:intergenic 35.0%
!! CTTAGAGAAGAGTTGATTTG+TGG - chr7_4:58500869-58500888 None:intergenic 35.0%
ATCGCATGAATCACAGATTA+AGG - chr7_4:58500902-58500921 None:intergenic 35.0%
!! ACAGTTTTGACAGAAAACAG+AGG - chr7_4:58500959-58500978 None:intergenic 35.0%
! TTTTCTGTCAAAACTGTGAC+TGG + chr7_4:58500962-58500981 Msa1166390:CDS 35.0%
TTTCTGTCAAAACTGTGACT+GGG + chr7_4:58500963-58500982 Msa1166390:CDS 35.0%
ACAAAAGCTCAGTAACTGAA+GGG - chr7_4:58501053-58501072 None:intergenic 35.0%
!! AAAATCTTTGCTTTTGCCTC+AGG + chr7_4:58501101-58501120 Msa1166390:CDS 35.0%
TTTGTTGGGTATGAGATTGA+AGG + chr7_4:58501141-58501160 Msa1166390:CDS 35.0%
GACTGTCTGATATGTTTGTT+TGG + chr7_4:58501163-58501182 Msa1166390:CDS 35.0%
TCGTCAAGACTAACAAAAGA+AGG - chr7_4:58501195-58501214 None:intergenic 35.0%
GCACGATAATTATGAGAAGA+AGG - chr7_4:58501234-58501253 None:intergenic 35.0%
TCATAATTATCGTGCTATGG+AGG + chr7_4:58501239-58501258 Msa1166390:CDS 35.0%
ATGAATTATACCTTGGGCAA+AGG - chr7_4:58501270-58501289 None:intergenic 35.0%
TTTGCCCAAGGTATAATTCA+TGG + chr7_4:58501269-58501288 Msa1166390:intron 35.0%
TGATCATAAACAAGGCATGA+TGG + chr7_4:58501396-58501415 Msa1166390:intron 35.0%
GATCATAAACAAGGCATGAT+GGG + chr7_4:58501397-58501416 Msa1166390:intron 35.0%
! GATGGGATTAGTGCTAAATT+AGG + chr7_4:58501414-58501433 Msa1166390:intron 35.0%
! ACCCTAAGTAATTTGGAGTT+CGG + chr7_4:58501561-58501580 Msa1166390:intron 35.0%
!!! GTTTTTTTTGGGGTGGTTAA+AGG - chr7_4:58501600-58501619 None:intergenic 35.0%
!!! TAAAAGGGTTTTTTTTGGGG+TGG - chr7_4:58501607-58501626 None:intergenic 35.0%
GTTCAACTCAAGTGGTTAAA+AGG - chr7_4:58501623-58501642 None:intergenic 35.0%
TCCTGAAGAATATATACCAC+CGG + chr7_4:58501788-58501807 Msa1166390:CDS 35.0%
!!! AGGTTTTGATTGCGATGTAA+AGG + chr7_4:58501824-58501843 Msa1166390:CDS 35.0%
!! AGAAGCATTACCTCATTTGA+AGG - chr7_4:58501861-58501880 None:intergenic 35.0%
GAAATCCATTATCAGGAATG+AGG - chr7_4:58501917-58501936 None:intergenic 35.0%
AGAATCAGAGATGCAAAACA+AGG - chr7_4:58502005-58502024 None:intergenic 35.0%
GATAGGAGCAATCAAAAAAG+AGG - chr7_4:58502057-58502076 None:intergenic 35.0%
!! TTTGGTAAACGAACTTGCTA+TGG + chr7_4:58502086-58502105 Msa1166390:intron 35.0%
! GTATTGATATAAGATGAGCC+AGG + chr7_4:58502108-58502127 Msa1166390:intron 35.0%
AAACATTCTGTATCTTCTGC+TGG + chr7_4:58502292-58502311 Msa1166390:CDS 35.0%
AACATTCTGTATCTTCTGCT+GGG + chr7_4:58502293-58502312 Msa1166390:CDS 35.0%
TAACTCATATGGAGAAGGAA+CGG - chr7_4:58502437-58502456 None:intergenic 35.0%
!! TCTTGACTTGCTAACTCATA+TGG - chr7_4:58502448-58502467 None:intergenic 35.0%
ATGAGTTAGCAAGTCAAGAA+AGG + chr7_4:58502449-58502468 Msa1166390:CDS 35.0%
TGAGTTAGCAAGTCAAGAAA+GGG + chr7_4:58502450-58502469 Msa1166390:CDS 35.0%
! GAAGAAAACAAGAAGGTATG+TGG + chr7_4:58502501-58502520 Msa1166390:intron 35.0%
TGAAGTATGGAGTTCAGATA+TGG - chr7_4:58502535-58502554 None:intergenic 35.0%
ATGATGACTCCCAAGTAATA+TGG + chr7_4:58502646-58502665 Msa1166390:intron 35.0%
GTGATCAAGCCATATTACTT+GGG - chr7_4:58502658-58502677 None:intergenic 35.0%
AGTGATCAAGCCATATTACT+TGG - chr7_4:58502659-58502678 None:intergenic 35.0%
AAGTAATATGGCTTGATCAC+TGG + chr7_4:58502658-58502677 Msa1166390:intron 35.0%
CAATTCACAGTAAATGGAAC+AGG - chr7_4:58502828-58502847 None:intergenic 35.0%
GTTCCATTTACTGTGAATTG+TGG + chr7_4:58502828-58502847 Msa1166390:intron 35.0%
GAACCACAATTCACAGTAAA+TGG - chr7_4:58502834-58502853 None:intergenic 35.0%
! TGTGGTTCTGTAATTGATCA+TGG + chr7_4:58502846-58502865 Msa1166390:intron 35.0%
TTTCATGTAAATACATGGGG+TGG - chr7_4:58502975-58502994 None:intergenic 35.0%
GGTATGAATCACGTAAAGTT+CGG + chr7_4:58503020-58503039 Msa1166390:CDS 35.0%
GTATGAATCACGTAAAGTTC+GGG + chr7_4:58503021-58503040 Msa1166390:CDS 35.0%
ATGATTTCAGTGCTCTATCT+TGG - chr7_4:58503080-58503099 None:intergenic 35.0%
!! AAGATAGAGCACTGAAATCA+TGG + chr7_4:58503079-58503098 Msa1166390:exon 35.0%
TGTATGATGTTGTGTATCCT+TGG + chr7_4:58503204-58503223 Msa1166390:intron 35.0%
!! CATAAAGTTGATGATTTGCC+AGG - chr7_4:58503302-58503321 None:intergenic 35.0%
!!! ACTTTTGTAGTTTTAGCTGG+GGG + chr7_4:58503391-58503410 Msa1166390:intron 35.0%
GGGAAATACTTGTAAGTTTG+CGG + chr7_4:58503412-58503431 Msa1166390:intron 35.0%
TAGCAAAATGCTTCCTTCTT+GGG - chr7_4:58503532-58503551 None:intergenic 35.0%
! GCGATATATCACTCTGATTT+TGG + chr7_4:58503699-58503718 Msa1166390:three_prime_UTR 35.0%
CCTAGAACTACAACTTTACA+TGG - chr7_4:58503823-58503842 None:intergenic 35.0%
CCATGTAAAGTTGTAGTTCT+AGG + chr7_4:58503820-58503839 Msa1166390:three_prime_UTR 35.0%
AAGCACAAGTTGTTGAAGTG+AGG - chr7_4:58500560-58500579 None:intergenic 40.0%
TTTGAAGAGAGTGGCAAAAG+AGG - chr7_4:58500617-58500636 None:intergenic 40.0%
AGGATATGGTTTGAAGAGAG+TGG - chr7_4:58500626-58500645 None:intergenic 40.0%
GAGAGATGAGAGAAAATGTG+AGG - chr7_4:58500673-58500692 None:intergenic 40.0%
TCTCTCTTAAACCACACCAT+GGG + chr7_4:58500703-58500722 Msa1166390:CDS 40.0%
! GGTCGAAATAGTTTGTGTGA+AGG - chr7_4:58500757-58500776 None:intergenic 40.0%
GTCACAAGAGAAACAGAGTT+TGG - chr7_4:58500833-58500852 None:intergenic 40.0%
GATTTGTGGAGTGAACTTCA+CGG - chr7_4:58500855-58500874 None:intergenic 40.0%
GTAGAACAGAGTATAGTAGC+AGG - chr7_4:58500931-58500950 None:intergenic 40.0%
CATGAGGTGAAGATAGTGAA+AGG - chr7_4:58500999-58501018 None:intergenic 40.0%
TATCTTCACCTCATGAACGA+AGG + chr7_4:58501004-58501023 Msa1166390:CDS 40.0%
GACAAAAGCTCAGTAACTGA+AGG - chr7_4:58501054-58501073 None:intergenic 40.0%
!!! TACTGAGCTTTTGTCGATTC+TGG + chr7_4:58501059-58501078 Msa1166390:CDS 40.0%
!!! ACTGAGCTTTTGTCGATTCT+GGG + chr7_4:58501060-58501079 Msa1166390:CDS 40.0%
ATTCTGGGTTTGCAGGATAT+TGG + chr7_4:58501075-58501094 Msa1166390:CDS 40.0%
AATTATACCTTGGGCAAAGG+AGG - chr7_4:58501267-58501286 None:intergenic 40.0%
GCCGAACTCCAAATTACTTA+GGG - chr7_4:58501565-58501584 None:intergenic 40.0%
AGCCGAACTCCAAATTACTT+AGG - chr7_4:58501566-58501585 None:intergenic 40.0%
TCGATCCTCATTCCTGATAA+TGG + chr7_4:58501909-58501928 Msa1166390:intron 40.0%
! GCTCCTATCTTCACTCTTTT+TGG + chr7_4:58502068-58502087 Msa1166390:intron 40.0%
TTGATATAAGATGAGCCAGG+TGG + chr7_4:58502111-58502130 Msa1166390:intron 40.0%
ACAGGAACAACTTGATGCAT+AGG - chr7_4:58502232-58502251 None:intergenic 40.0%
!! GCTTTGAAGGATGTATCAAC+AGG - chr7_4:58502250-58502269 None:intergenic 40.0%
ACATTCTGTATCTTCTGCTG+GGG + chr7_4:58502294-58502313 Msa1166390:CDS 40.0%
TCTCTCAACCACTGTAACAA+CGG + chr7_4:58502358-58502377 Msa1166390:CDS 40.0%
TCAGACTTGAGATACTCTGA+AGG - chr7_4:58502391-58502410 None:intergenic 40.0%
CTTGCTAACTCATATGGAGA+AGG - chr7_4:58502442-58502461 None:intergenic 40.0%
GGATTGTTGATCAATGAGCT+AGG + chr7_4:58502903-58502922 Msa1166390:intron 40.0%
AGTGCTCTATCTTGGCAAAT+CGG - chr7_4:58503072-58503091 None:intergenic 40.0%
!! TAGAGCACTGAAATCATGGT+AGG + chr7_4:58503083-58503102 Msa1166390:intron 40.0%
!!! CTTTTGTAGTTTTAGCTGGG+GGG + chr7_4:58503392-58503411 Msa1166390:intron 40.0%
AGCAAAATGCTTCCTTCTTG+GGG - chr7_4:58503531-58503550 None:intergenic 40.0%
CTAGCAAAATGCTTCCTTCT+TGG - chr7_4:58503533-58503552 None:intergenic 40.0%
TTGTTCTTGAACCTGTAGCT+TGG + chr7_4:58503569-58503588 Msa1166390:three_prime_UTR 40.0%
!! CTTGGAAGGTGCTTATGTTT+GGG + chr7_4:58503587-58503606 Msa1166390:three_prime_UTR 40.0%
AGGAGTCATATACTTCATCC+TGG + chr7_4:58503612-58503631 Msa1166390:three_prime_UTR 40.0%
GGGTTGAAAAATAGAAGACC+AGG - chr7_4:58503633-58503652 None:intergenic 40.0%
! GAAGAAAAAGTGTGAACCCT+TGG + chr7_4:58503889-58503908 Msa1166390:three_prime_UTR 40.0%
CTCATCCAACTTCAATCCAA+GGG - chr7_4:58503908-58503927 None:intergenic 40.0%
GAGAGTGGCAAAAGAGGATT+TGG - chr7_4:58500611-58500630 None:intergenic 45.0%
AGGTAGGTGGAATGAGGATA+TGG - chr7_4:58500640-58500659 None:intergenic 45.0%
AAGGTTAGGTAGGTGGAATG+AGG - chr7_4:58500646-58500665 None:intergenic 45.0%
AGGAGAAAAGGTTAGGTAGG+TGG - chr7_4:58500653-58500672 None:intergenic 45.0%
GTGAGGAGAAAAGGTTAGGT+AGG - chr7_4:58500656-58500675 None:intergenic 45.0%
CTCTCTCTTAAACCACACCA+TGG + chr7_4:58500702-58500721 Msa1166390:CDS 45.0%
TGTGTGAAGGGTTAGGGTTA+GGG - chr7_4:58500744-58500763 None:intergenic 45.0%
TTGTGTGAAGGGTTAGGGTT+AGG - chr7_4:58500745-58500764 None:intergenic 45.0%
!! TTTGTCGATTCTGGGTTTGC+AGG + chr7_4:58501068-58501087 Msa1166390:CDS 45.0%
!! CTTTTGCCTCAGGAAAGTGT+AGG + chr7_4:58501111-58501130 Msa1166390:CDS 45.0%
! CTCAGGAAAGTGTAGGAGAT+GGG + chr7_4:58501118-58501137 Msa1166390:CDS 45.0%
! AGTGTAGGAGATGGGTTTGT+TGG + chr7_4:58501126-58501145 Msa1166390:CDS 45.0%
! GTGTAGGAGATGGGTTTGTT+GGG + chr7_4:58501127-58501146 Msa1166390:CDS 45.0%
GCCGGTGGTATATATTCTTC+AGG - chr7_4:58501792-58501811 None:intergenic 45.0%
CCTGTAGATAAATTTGCCGG+TGG - chr7_4:58501807-58501826 None:intergenic 45.0%
CCACCGGCAAATTTATCTAC+AGG + chr7_4:58501804-58501823 Msa1166390:CDS 45.0%
! TTCTTCGGTGTGAGCTTTGA+AGG - chr7_4:58502263-58502282 None:intergenic 45.0%
CCTCATACCCAGTGTAACAA+CGG + chr7_4:58502319-58502338 Msa1166390:CDS 45.0%
ATACCCAGTGTAACAACGGA+GGG + chr7_4:58502323-58502342 Msa1166390:CDS 45.0%
CAGTGGTTGAGAGATTCTGA+AGG - chr7_4:58502352-58502371 None:intergenic 45.0%
TCAACCACTGTAACAACGGA+GGG + chr7_4:58502362-58502381 Msa1166390:CDS 45.0%
!! GGCTTTAGGAGTAGTTGACA+AGG - chr7_4:58502416-58502435 None:intergenic 45.0%
TATGGAGAAGGAACGGCTTT+AGG - chr7_4:58502430-58502449 None:intergenic 45.0%
TGAATCACGTAAAGTTCGGG+CGG + chr7_4:58503024-58503043 Msa1166390:CDS 45.0%
GAGAGCAGGACAAGAGTTAA+GGG + chr7_4:58503046-58503065 Msa1166390:CDS 45.0%
!! GTATCAAAGCTCTGGATCCA+AGG - chr7_4:58503224-58503243 None:intergenic 45.0%
ACTGCACAGTATCAAAGCTC+TGG - chr7_4:58503232-58503251 None:intergenic 45.0%
TTCTGCTCCAAGTCTACCAT+AGG - chr7_4:58503505-58503524 None:intergenic 45.0%
TCTTGAACCTGTAGCTTGGA+AGG + chr7_4:58503573-58503592 Msa1166390:three_prime_UTR 45.0%
ATAAGCACCTTCCAAGCTAC+AGG - chr7_4:58503583-58503602 None:intergenic 45.0%
!! GCTTGGAAGGTGCTTATGTT+TGG + chr7_4:58503586-58503605 Msa1166390:three_prime_UTR 45.0%
! AAGGTGCTTATGTTTGGGCA+AGG + chr7_4:58503592-58503611 Msa1166390:three_prime_UTR 45.0%
GTGAACCCTTGGATTGAAGT+TGG + chr7_4:58503900-58503919 Msa1166390:three_prime_UTR 45.0%
GCTCATCCAACTTCAATCCA+AGG - chr7_4:58503909-58503928 None:intergenic 45.0%
CTCTTAAACCACACCATGGG+TGG + chr7_4:58500706-58500725 Msa1166390:CDS 50.0%
! GTTTCTAGGAGAACCACCCA+TGG - chr7_4:58500722-58500741 None:intergenic 50.0%
GGGTTAGGGTTAGGGTTTCT+AGG - chr7_4:58500736-58500755 None:intergenic 50.0%
TCAAGAGGCCTTCGTTCATG+AGG - chr7_4:58501015-58501034 None:intergenic 50.0%
TCATGAACGAAGGCCTCTTG+AGG + chr7_4:58501014-58501033 Msa1166390:CDS 50.0%
CATGAACGAAGGCCTCTTGA+GGG + chr7_4:58501015-58501034 Msa1166390:CDS 50.0%
! AGGCCTCTTGAGGGTTTTAC+AGG + chr7_4:58501024-58501043 Msa1166390:CDS 50.0%
! GGCCTCTTGAGGGTTTTACA+GGG + chr7_4:58501025-58501044 Msa1166390:CDS 50.0%
CACCCTGTAAAACCCTCAAG+AGG - chr7_4:58501030-58501049 None:intergenic 50.0%
CCATCTCCTACACTTTCCTG+AGG - chr7_4:58501120-58501139 None:intergenic 50.0%
! CCTCAGGAAAGTGTAGGAGA+TGG + chr7_4:58501117-58501136 Msa1166390:CDS 50.0%
CAGAATCGTAAGGCTGCTTG+TGG + chr7_4:58501705-58501724 Msa1166390:intron 50.0%
CCGTTGTTACACTGGGTATG+AGG - chr7_4:58502322-58502341 None:intergenic 50.0%
CATACCCAGTGTAACAACGG+AGG + chr7_4:58502322-58502341 Msa1166390:CDS 50.0%
CTCAACCACTGTAACAACGG+AGG + chr7_4:58502361-58502380 Msa1166390:CDS 50.0%
GGAGAGCAGGACAAGAGTTA+AGG + chr7_4:58503045-58503064 Msa1166390:CDS 50.0%
! TGGAGCACCTATGGTAGACT+TGG + chr7_4:58503495-58503514 Msa1166390:three_prime_UTR 50.0%
TAGGAGAACCACCCATGGTG+TGG - chr7_4:58500717-58500736 None:intergenic 55.0%
CGTCCCTCCGTTGTTACACT+GGG - chr7_4:58502329-58502348 None:intergenic 55.0%
!! GGAGCAGAAGTACCCCAAGA+AGG + chr7_4:58503516-58503535 Msa1166390:three_prime_UTR 55.0%
GGAGGTTCCTCCTTTGCCCA+AGG + chr7_4:58501257-58501276 Msa1166390:CDS 60.0%
GCGTCCCTCCGTTGTTACAC+TGG - chr7_4:58502330-58502349 None:intergenic 60.0%
GCGTCCCTCCGTTGTTACAG+TGG - chr7_4:58502369-58502388 None:intergenic 60.0%
GTAAAGTTCGGGCGGAGAGC+AGG + chr7_4:58503032-58503051 Msa1166390:CDS 60.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 58500529 58503936 58500529 ID=Msa1166390;Name=Msa1166390
chr7_4 mRNA 58500529 58503936 58500529 ID=Msa1166390-mRNA-1;Parent=Msa1166390;Name=Msa1166390-mRNA-1;_AED=0.14;_eAED=0.14;_QI=0|1|0.6|1|0.5|0.8|5|466|436
chr7_4 exon 58500529 58501278 58500529 ID=Msa1166390-mRNA-1:exon:17955;Parent=Msa1166390-mRNA-1
chr7_4 exon 58501708 58501869 58501708 ID=Msa1166390-mRNA-1:exon:17956;Parent=Msa1166390-mRNA-1
chr7_4 exon 58502208 58502515 58502208 ID=Msa1166390-mRNA-1:exon:17957;Parent=Msa1166390-mRNA-1
chr7_4 exon 58503003 58503100 58503003 ID=Msa1166390-mRNA-1:exon:17958;Parent=Msa1166390-mRNA-1
chr7_4 exon 58503478 58503936 58503478 ID=Msa1166390-mRNA-1:exon:17959;Parent=Msa1166390-mRNA-1
chr7_4 CDS 58500529 58501278 58500529 ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4 CDS 58501708 58501869 58501708 ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4 CDS 58502208 58502515 58502208 ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4 CDS 58503003 58503093 58503003 ID=Msa1166390-mRNA-1:cds;Parent=Msa1166390-mRNA-1
chr7_4 three_prime_UTR 58503094 58503100 58503094 ID=Msa1166390-mRNA-1:three_prime_utr;Parent=Msa1166390-mRNA-1
chr7_4 three_prime_UTR 58503478 58503936 58503478 ID=Msa1166390-mRNA-1:three_prime_utr;Parent=Msa1166390-mRNA-1
Gene Sequence

>Msa1166390

ATGACAACAAAAATGTCAATTCCATTATCCTCACTTCAACAACTTGTGCTTGCTCTCCAAGAAATGAATGAGTCACATGCCAAATCCTCTTTTGCCACTCTCTTCAAACCATATCCTCATTCCACCTACCTAACCTTTTCTCCTCACATTTTCTCTCATCTCTCTCTCACACACTCTCTCTTAAACCACACCATGGGTGGTTCTCCTAGAAACCCTAACCCTAACCCTTCACACAAACTATTTCGACCTTGTGATTATTGTGGCAATTCAAACGCAGTTATATACTGCAGAGCAGATTCAGCCAAACTCTGTTTCTCTTGTGACCGTGAAGTTCACTCCACAAATCAACTCTTCTCTAAGCACACACGCTCCTTAATCTGTGATTCATGCGATGATTCACCTGCTACTATACTCTGTTCTACAGAATCCTCTGTTTTCTGTCAAAACTGTGACTGGGAAAATCACAACCTTTCACTATCTTCACCTCATGAACGAAGGCCTCTTGAGGGTTTTACAGGGTGCCCTTCAGTTACTGAGCTTTTGTCGATTCTGGGTTTGCAGGATATTGGAAAAAAATCTTTGCTTTTGCCTCAGGAAAGTGTAGGAGATGGGTTTGTTGGGTATGAGATTGAAGGACTGTCTGATATGTTTGTTTGGGATGCTCCTTCTTTTGTTAGTCTTGACGATCTTATTTCTTCTTCTCCTTCTTCTCATAATTATCGTGCTATGGAGGTTCCTCCTTTGCCCAAGAATCGTAAGGCTGCTTGTGGTAGACACAGAGAAGAGATTTTAAATCAGCTTCGTGAGATGACAAAGTCTGAGCCCTATGATCCTGAAGAATATATACCACCGGCAAATTTATCTACAGGTTTTGATTGCGATGTAAAGGCTGATATTGTTCCTTCAAATGAGTGGCTCAGAGAAAGTAGCGAGCCTATGCATCAAGTTGTTCCTGTTGATACATCCTTCAAAGCTCACACCGAAGAAATTTCACTTAAACATTCTGTATCTTCTGCTGGGGAGCCTCATACCCAGTGTAACAACGGAGGGACGCCTTCAGAATCTCTCAACCACTGTAACAACGGAGGGACGCCTTCAGAGTATCTCAAGTCTGAAACCTTGTCAACTACTCCTAAAGCCGTTCCTTCTCCATATGAGTTAGCAAGTCAAGAAAGGGATTCTGCATTATTACGGTACAAGCAAAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGTAAAGTTCGGGCGGAGAGCAGGACAAGAGTTAAGGGCCGATTTGCCAAGATAGAGCACTGA
Protein sequence

>Msa1166390

MTTKMSIPLSSLQQLVLALQEMNESHAKSSFATLFKPYPHSTYLTFSPHIFSHLSLTHSLLNHTMGGSPRNPNPNPSHKLFRPCDYCGNSNAVIYCRADSAKLCFSCDREVHSTNQLFSKHTRSLICDSCDDSPATILCSTESSVFCQNCDWENHNLSLSSPHERRPLEGFTGCPSVTELLSILGLQDIGKKSLLLPQESVGDGFVGYEIEGLSDMFVWDAPSFVSLDDLISSSPSSHNYRAMEVPPLPKNRKAACGRHREEILNQLREMTKSEPYDPEEYIPPANLSTGFDCDVKADIVPSNEWLRESSEPMHQVVPVDTSFKAHTEEISLKHSVSSAGEPHTQCNNGGTPSESLNHCNNGGTPSEYLKSETLSTTPKAVPSPYELASQERDSALLRYKQKKKTRRYDKHIRYESRKVRAESRTRVKGRFAKIEH*