Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183410 | sp|Q9FLC2|MO3_ARATH | 50.919 | 381 | 177 | 3 | 100 | 474 | 27 | 403 | 1.35e-135 | 399 |
| Msa0183410 | sp|Q9FLC2|MO3_ARATH | 49.412 | 85 | 43 | 0 | 1 | 85 | 1 | 85 | 3.90e-17 | 86.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183410 | A0A072VRJ9 | 79.167 | 96 | 20 | 0 | 5 | 100 | 1 | 96 | 1.10e-40 | 160 |
| Msa0183410 | A0A072VRJ9 | 91.755 | 376 | 31 | 0 | 100 | 475 | 23 | 398 | 0.0 | 677 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0010760 | Msa0183410 | 0.942870 | 3.333588e-102 | -8.615850e-47 |
| Msa0090910 | Msa0183410 | 0.879357 | 1.331711e-69 | -8.615850e-47 |
| Msa0138220 | Msa0183410 | 0.977167 | 3.049928e-143 | -8.615850e-47 |
| Msa0183410 | Msa0307470 | 0.810016 | 1.421326e-50 | -8.615850e-47 |
| Msa0183410 | Msa0388840 | 0.816350 | 5.785600e-52 | -8.615850e-47 |
| Msa0183410 | Msa0433530 | 0.801811 | 7.550184e-49 | -8.615850e-47 |
| Msa0183410 | Msa0531550 | 0.804541 | 2.056407e-49 | -8.615850e-47 |
| Msa0183410 | Msa0588240 | 0.822482 | 2.313115e-53 | -8.615850e-47 |
| Msa0183410 | Msa0704730 | 0.805920 | 1.057320e-49 | -8.615850e-47 |
| Msa0183410 | Msa1041540 | 0.800767 | 1.235063e-48 | -8.615850e-47 |
| Msa0183410 | Msa1166390 | 0.827082 | 1.903534e-54 | -8.615850e-47 |
| Msa0183410 | Msa1187780 | 0.858159 | 9.972393e-63 | -8.615850e-47 |
| Msa0183410 | Msa1241990 | 0.848700 | 5.186518e-60 | -8.615850e-47 |
| Msa0183410 | Msa1283150 | 0.816642 | 4.977920e-52 | -8.615850e-47 |
| Msa0183410 | Msa1322400 | 0.815316 | 9.842866e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183410 | MtrunA17_Chr1g0211141 | 91.755 | 376 | 31 | 0 | 100 | 475 | 23 | 398 | 0.0 | 677 |
| Msa0183410 | MtrunA17_Chr1g0211141 | 79.167 | 96 | 20 | 0 | 5 | 100 | 1 | 96 | 2.11e-44 | 160 |
| Msa0183410 | MtrunA17_Chr1g0211171 | 83.812 | 383 | 55 | 2 | 100 | 475 | 27 | 409 | 0.0 | 629 |
| Msa0183410 | MtrunA17_Chr1g0211171 | 82.828 | 99 | 17 | 0 | 1 | 99 | 1 | 99 | 1.68e-47 | 169 |
| Msa0183410 | MtrunA17_Chr1g0197161 | 81.579 | 380 | 66 | 1 | 100 | 475 | 27 | 406 | 0.0 | 627 |
| Msa0183410 | MtrunA17_Chr1g0197161 | 79.381 | 97 | 20 | 0 | 1 | 97 | 1 | 97 | 1.03e-43 | 159 |
| Msa0183410 | MtrunA17_Chr1g0211181 | 77.600 | 375 | 83 | 1 | 100 | 474 | 30 | 403 | 0.0 | 595 |
| Msa0183410 | MtrunA17_Chr1g0211181 | 74.468 | 94 | 23 | 1 | 6 | 99 | 9 | 101 | 2.93e-39 | 146 |
| Msa0183410 | MtrunA17_Chr1g0211151 | 76.316 | 380 | 86 | 2 | 100 | 475 | 27 | 406 | 0.0 | 550 |
| Msa0183410 | MtrunA17_Chr1g0211151 | 89.216 | 102 | 11 | 0 | 1 | 102 | 1 | 102 | 1.39e-53 | 185 |
| Msa0183410 | MtrunA17_Chr5g0399671 | 38.375 | 357 | 212 | 4 | 100 | 455 | 64 | 413 | 1.18e-77 | 248 |
| Msa0183410 | MtrunA17_Chr5g0399671 | 50.515 | 97 | 47 | 1 | 4 | 100 | 41 | 136 | 1.50e-20 | 93.6 |
| Msa0183410 | MtrunA17_Chr5g0399661 | 36.148 | 379 | 231 | 5 | 100 | 475 | 60 | 430 | 3.09e-73 | 237 |
| Msa0183410 | MtrunA17_Chr5g0399661 | 47.959 | 98 | 50 | 1 | 3 | 100 | 36 | 132 | 6.21e-20 | 92.0 |
| Msa0183410 | MtrunA17_Chr4g0018001 | 31.313 | 198 | 135 | 1 | 253 | 449 | 16 | 213 | 1.44e-31 | 121 |
| Msa0183410 | MtrunA17_Chr4g0017981 | 35.461 | 141 | 84 | 1 | 331 | 471 | 15 | 148 | 1.10e-22 | 94.7 |
| Msa0183410 | MtrunA17_Chr4g0017951 | 52.632 | 76 | 36 | 0 | 1 | 76 | 1 | 76 | 2.99e-19 | 82.0 |
| Msa0183410 | MtrunA17_Chr4g0017991 | 53.521 | 71 | 33 | 0 | 6 | 76 | 6 | 76 | 2.94e-17 | 79.7 |
| Msa0183410 | MtrunA17_Chr4g0017991 | 35.938 | 128 | 59 | 3 | 103 | 228 | 30 | 136 | 2.98e-14 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183410 | AT5G05320.1 | 50.919 | 381 | 177 | 3 | 100 | 474 | 27 | 403 | 1.37e-136 | 399 |
| Msa0183410 | AT5G05320.1 | 49.412 | 85 | 43 | 0 | 1 | 85 | 1 | 85 | 3.97e-18 | 86.7 |
| Msa0183410 | AT4G38540.1 | 52.880 | 382 | 170 | 3 | 100 | 474 | 27 | 405 | 3.49e-130 | 383 |
| Msa0183410 | AT4G38540.1 | 45.361 | 97 | 53 | 0 | 1 | 97 | 1 | 97 | 2.70e-19 | 90.1 |
| Msa0183410 | AT2G35660.1 | 36.772 | 378 | 228 | 5 | 100 | 474 | 65 | 434 | 3.18e-72 | 235 |
| Msa0183410 | AT2G35660.1 | 46.316 | 95 | 50 | 1 | 6 | 100 | 44 | 137 | 9.94e-19 | 89.0 |
| Msa0183410 | AT2G29720.1 | 36.944 | 360 | 218 | 4 | 100 | 458 | 63 | 414 | 1.63e-71 | 233 |
| Msa0183410 | AT2G29720.1 | 42.391 | 92 | 50 | 2 | 19 | 108 | 55 | 145 | 5.99e-13 | 70.9 |
| Msa0183410 | AT4G15760.1 | 32.540 | 378 | 244 | 5 | 102 | 474 | 51 | 422 | 1.18e-62 | 209 |
| Msa0183410 | AT4G15760.2 | 32.051 | 390 | 242 | 6 | 102 | 474 | 51 | 434 | 1.03e-61 | 207 |
| Msa0183410 | AT2G35660.2 | 36.562 | 320 | 193 | 4 | 158 | 474 | 8 | 320 | 6.32e-58 | 194 |
| Msa0183410 | AT2G35660.3 | 36.562 | 320 | 193 | 4 | 158 | 474 | 8 | 320 | 6.32e-58 | 194 |
| Msa0183410 | AT4G15765.1 | 27.437 | 277 | 160 | 6 | 102 | 376 | 26 | 263 | 2.53e-26 | 108 |
| Msa0183410 | AT4G15765.2 | 27.717 | 184 | 132 | 1 | 193 | 376 | 8 | 190 | 1.12e-23 | 98.6 |
| Msa0183410 | AT4G15765.5 | 27.717 | 184 | 132 | 1 | 193 | 376 | 8 | 190 | 1.12e-23 | 98.6 |
| Msa0183410 | AT4G15765.3 | 27.717 | 184 | 132 | 1 | 193 | 376 | 8 | 190 | 1.12e-23 | 98.6 |
| Msa0183410 | AT4G15765.4 | 27.717 | 184 | 132 | 1 | 193 | 376 | 8 | 190 | 1.12e-23 | 98.6 |
| Msa0183410 | AT5G67030.2 | 26.346 | 353 | 212 | 12 | 99 | 425 | 100 | 430 | 1.11e-14 | 77.0 |
| Msa0183410 | AT5G67030.1 | 26.346 | 353 | 212 | 12 | 99 | 425 | 100 | 430 | 2.07e-14 | 76.3 |
Find 121 sgRNAs with CRISPR-Local
Find 460 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTCCTTTGGTTTCT+TGG | 0.080457 | 1_4:-72347017 | None:intergenic |
| CAAAATTTGTTAACTTCTTT+AGG | 0.144756 | 1_4:+72347152 | Msa0183410:CDS |
| GTCAAAGGTTGTTGCTATTC+AGG | 0.183324 | 1_4:+72346177 | Msa0183410:CDS |
| CTTCTTTAGGGATAAAATTC+TGG | 0.205709 | 1_4:+72347165 | Msa0183410:CDS |
| GCGGATTTGCTTTAACAATA+TGG | 0.223001 | 1_4:+72344940 | Msa0183410:CDS |
| ATATTGAACTATATACTTAT+TGG | 0.224695 | 1_4:+72339266 | Msa0183410:five_prime_UTR |
| AATATGCAAGTGAGAGAAAA+TGG | 0.232349 | 1_4:+72347071 | Msa0183410:CDS |
| GGTATTTCACCTTGGCTAAT+AGG | 0.258501 | 1_4:-72346472 | None:intergenic |
| TGGCAGGCCTTGGATGTTAT+TGG | 0.260063 | 1_4:+72339687 | Msa0183410:CDS |
| AAAATTTGTTAACTTCTTTA+GGG | 0.269584 | 1_4:+72347153 | Msa0183410:CDS |
| TAAATTTATATTATATAGAT+TGG | 0.306313 | 1_4:-72347368 | None:intergenic |
| AAAGGAAATGTTTGTGTTGT+TGG | 0.311040 | 1_4:+72346896 | Msa0183410:CDS |
| CGGATTTGCTTTAACAATAT+GGG | 0.317160 | 1_4:+72344941 | Msa0183410:CDS |
| TTCCTTTGGTTTCTTGGAAA+AGG | 0.321296 | 1_4:-72347011 | None:intergenic |
| TTGTATTCTTCTTCTTCCTT+TGG | 0.323398 | 1_4:-72347025 | None:intergenic |
| AATATCAACTACGTCTTTCA+TGG | 0.328496 | 1_4:+72344062 | Msa0183410:CDS |
| GTTGTTGCTATTCAGGAATC+TGG | 0.332949 | 1_4:+72346184 | Msa0183410:CDS |
| AAAATATTACATCTTGTTGA+TGG | 0.342630 | 1_4:+72346214 | Msa0183410:CDS |
| TGCATATCTCCCTGTGTTAG+AGG | 0.344088 | 1_4:-72346317 | None:intergenic |
| GTGAAGTTCGTTGTGTTAGA+AGG | 0.345398 | 1_4:+72346098 | Msa0183410:intron |
| TTGTTGAATAAATTCTCTAA+TGG | 0.351556 | 1_4:-72347320 | None:intergenic |
| GTGACTACTTCTTTGATAAC+GGG | 0.364125 | 1_4:+72344033 | Msa0183410:CDS |
| TTCAAAGAGGCCTCTAACAC+AGG | 0.364705 | 1_4:+72346307 | Msa0183410:CDS |
| AACTATATACTTATTGGTAA+TGG | 0.369844 | 1_4:+72339272 | Msa0183410:exon |
| GTGATGAGAGGAGTGTTTAT+TGG | 0.370317 | 1_4:+72346434 | Msa0183410:CDS |
| CACAAATATCTACAACTTCA+TGG | 0.371135 | 1_4:+72339729 | Msa0183410:CDS |
| GGGTGTTGTGCTTTAGAGGA+TGG | 0.372973 | 1_4:+72346959 | Msa0183410:CDS |
| CATCGACATATTCAACTTCA+TGG | 0.377254 | 1_4:+72345014 | Msa0183410:CDS |
| GTGGATTTGCTTTAACACTA+TGG | 0.378469 | 1_4:+72339655 | Msa0183410:CDS |
| AAGCTTGATATTAGAATCTT+CGG | 0.379835 | 1_4:+72339617 | Msa0183410:CDS |
| GTGACGACTACTTTGATTAC+GGG | 0.384896 | 1_4:+72345930 | Msa0183410:CDS |
| GGTGTTGTGCTTTAGAGGAT+GGG | 0.387261 | 1_4:+72346960 | Msa0183410:CDS |
| ATCAAAACCAAGGTGTTGAT+TGG | 0.389792 | 1_4:+72346244 | Msa0183410:CDS |
| TGACCAAGATCAGGTGTCAT+AGG | 0.390228 | 1_4:-72346932 | None:intergenic |
| CACCCTATGACACCTGATCT+TGG | 0.391704 | 1_4:+72346929 | Msa0183410:CDS |
| TGTGACGACTACTTTGATTA+CGG | 0.393200 | 1_4:+72345929 | Msa0183410:CDS |
| GCCTTGGATGTTGTTGGTGT+TGG | 0.395609 | 1_4:+72344978 | Msa0183410:CDS |
| GCCTTGGATGTTATTGGTGT+TGG | 0.398050 | 1_4:+72339693 | Msa0183410:CDS |
| CATGAAGTTGTAGATATTTG+TGG | 0.403354 | 1_4:-72339728 | None:intergenic |
| ATTACTGCATCTTATATTGT+GGG | 0.404848 | 1_4:+72347109 | Msa0183410:CDS |
| TGGAAGGCCTTGGATGTTGT+TGG | 0.417071 | 1_4:+72344972 | Msa0183410:CDS |
| ACATATTGTTTCAGATTAGC+AGG | 0.417614 | 1_4:-72346746 | None:intergenic |
| GTGTTGTGCTTTAGAGGATG+GGG | 0.426399 | 1_4:+72346961 | Msa0183410:CDS |
| CATTACTGCATCTTATATTG+TGG | 0.430022 | 1_4:+72347108 | Msa0183410:CDS |
| TTTCCTTTGTTATTCTTGAA+AGG | 0.430760 | 1_4:-72345972 | None:intergenic |
| TGTGACTACTTCTTTGATAA+CGG | 0.438236 | 1_4:+72344032 | Msa0183410:CDS |
| TCCTAAGGATGTTGTGAGTC+CGG | 0.452600 | 1_4:-72339340 | None:intergenic |
| ATTGTGGGAGCTGGAATTGC+CGG | 0.453950 | 1_4:+72339321 | Msa0183410:CDS |
| CCAATGTTCATGCAGTACTT+TGG | 0.458036 | 1_4:+72346382 | Msa0183410:CDS |
| TAACAATATGGGAAAATGCT+TGG | 0.460242 | 1_4:+72344952 | Msa0183410:CDS |
| TGTTAGAAGGAAGTTATTGT+TGG | 0.460274 | 1_4:+72346111 | Msa0183410:CDS |
| GGAAAATGCTTGGAAGGCCT+TGG | 0.464232 | 1_4:+72344962 | Msa0183410:CDS |
| AACCTTTGACATGTACCTAA+TGG | 0.465605 | 1_4:-72346164 | None:intergenic |
| CATTGAGATATAGACATCCT+TGG | 0.475442 | 1_4:+72346849 | Msa0183410:CDS |
| AGCTTCCTAGTGGCACCATT+AGG | 0.478225 | 1_4:+72346149 | Msa0183410:CDS |
| CTTTAACTCTGCATAACCTC+TGG | 0.478251 | 1_4:-72346341 | None:intergenic |
| TGAAGAAGATATTGTGATTG+TGG | 0.488194 | 1_4:+72339305 | Msa0183410:CDS |
| ACATCCTTGGGAGCTTATGA+TGG | 0.490825 | 1_4:+72346862 | Msa0183410:CDS |
| TCTGTGGTGGCAAAGTGGTT+AGG | 0.491813 | 1_4:+72346283 | Msa0183410:CDS |
| ATTGAGATATAGACATCCTT+GGG | 0.500029 | 1_4:+72346850 | Msa0183410:CDS |
| ATAACACAAGTTCATTATCA+TGG | 0.501315 | 1_4:-72347276 | None:intergenic |
| ACAAATATCTACAACTTCAT+GGG | 0.502782 | 1_4:+72339730 | Msa0183410:CDS |
| TCAAAACCAAGGTGTTGATT+GGG | 0.505761 | 1_4:+72346245 | Msa0183410:CDS |
| AGGAAGAAGAAGAATACAAA+AGG | 0.505964 | 1_4:+72347029 | Msa0183410:CDS |
| TGGTTTCTTGGAAAAGGCCT+CGG | 0.506552 | 1_4:-72347005 | None:intergenic |
| TTGTGCTTTAGAGGATGGGG+TGG | 0.506803 | 1_4:+72346964 | Msa0183410:CDS |
| AGAAGAATACAAAAGGATTG+AGG | 0.512161 | 1_4:+72347036 | Msa0183410:CDS |
| GCCGGACTCACAACATCCTT+AGG | 0.512209 | 1_4:+72339339 | Msa0183410:CDS |
| CAAGGATGTCTATATCTCAA+TGG | 0.515761 | 1_4:-72346848 | None:intergenic |
| TCGAATAGTTTGCGAGTAAG+CGG | 0.516449 | 1_4:+72344921 | Msa0183410:CDS |
| GATATTGTGATTGTGGGAGC+TGG | 0.518765 | 1_4:+72339312 | Msa0183410:CDS |
| CCAAAGTACTGCATGAACAT+TGG | 0.523201 | 1_4:-72346382 | None:intergenic |
| GAAGAAGATATTGTGATTGT+GGG | 0.526373 | 1_4:+72339306 | Msa0183410:CDS |
| ATGATGGGAAATATTAGTAA+AGG | 0.531699 | 1_4:+72346878 | Msa0183410:CDS |
| CAACATCCTTAGGACTTCAC+AGG | 0.536535 | 1_4:+72339349 | Msa0183410:CDS |
| TTCATGCAGTACTTTGGCAA+AGG | 0.540273 | 1_4:+72346388 | Msa0183410:CDS |
| GACCAAGATCAGGTGTCATA+GGG | 0.545249 | 1_4:-72346931 | None:intergenic |
| TCGGATGGTTTGAGAGTGAG+TGG | 0.545800 | 1_4:+72339636 | Msa0183410:CDS |
| ACAATACCTGTGAAGTCCTA+AGG | 0.548073 | 1_4:-72339355 | None:intergenic |
| AATATGGGAAAATGCTTGGA+AGG | 0.553301 | 1_4:+72344956 | Msa0183410:CDS |
| TTTGTTATTCTTGAAAGGTG+TGG | 0.554455 | 1_4:-72345967 | None:intergenic |
| GGGCTCTTCCATGTGATGAG+AGG | 0.554636 | 1_4:+72346422 | Msa0183410:CDS |
| GTGGGTTATATTCAACAAAG+TGG | 0.555643 | 1_4:+72347127 | Msa0183410:CDS |
| GGTGCCACTAGGAAGCTCAT+TGG | 0.561305 | 1_4:-72346143 | None:intergenic |
| GTTGAATATGTCGATGGCGA+AGG | 0.567318 | 1_4:-72345007 | None:intergenic |
| GTTGTAGATATTTGTGGCGA+AGG | 0.570033 | 1_4:-72339722 | None:intergenic |
| TGCTAATCTGAAACAATATG+TGG | 0.570705 | 1_4:+72346748 | Msa0183410:CDS |
| ATGACACCTGATCTTGGTCA+AGG | 0.570907 | 1_4:+72346935 | Msa0183410:CDS |
| CACCATTAGGTACATGTCAA+AGG | 0.572299 | 1_4:+72346162 | Msa0183410:CDS |
| TTTAGCAAGGTGCTTAGCCG+AGG | 0.575073 | 1_4:+72346988 | Msa0183410:CDS |
| ATCACACCCAATCAACACCT+TGG | 0.578417 | 1_4:-72346251 | None:intergenic |
| ATCGACATATTCAACTTCAT+GGG | 0.578947 | 1_4:+72345015 | Msa0183410:CDS |
| TGACACCTGATCTTGGTCAA+GGG | 0.585117 | 1_4:+72346936 | Msa0183410:CDS |
| CATATTGTTTCAGATTAGCA+GGG | 0.586481 | 1_4:-72346745 | None:intergenic |
| TCTTCAACAGTTGAACAGCT+AGG | 0.593198 | 1_4:-72347195 | None:intergenic |
| CATCCTTGGGAGCTTATGAT+GGG | 0.594050 | 1_4:+72346863 | Msa0183410:CDS |
| AAGGTGTTGATTGGGTGTGA+TGG | 0.594090 | 1_4:+72346253 | Msa0183410:CDS |
| TTTCCCATCATAAGCTCCCA+AGG | 0.596739 | 1_4:-72346866 | None:intergenic |
| TTGATATTAGAATCTTCGGA+TGG | 0.597630 | 1_4:+72339621 | Msa0183410:CDS |
| GACACCTGATCTTGGTCAAG+GGG | 0.601603 | 1_4:+72346937 | Msa0183410:CDS |
| ACATGGACTCCTATTAGCCA+AGG | 0.609077 | 1_4:+72346463 | Msa0183410:CDS |
| CATGAAGTTGAATATGTCGA+TGG | 0.612735 | 1_4:-72345013 | None:intergenic |
| TAAACACTCCTCTCATCACA+TGG | 0.612843 | 1_4:-72346430 | None:intergenic |
| TCCAACACCAATAACATCCA+AGG | 0.622075 | 1_4:-72339694 | None:intergenic |
| TCCAACACCAACAACATCCA+AGG | 0.623961 | 1_4:-72344979 | None:intergenic |
| ACACCTTTCAAGAATAACAA+AGG | 0.628535 | 1_4:+72345969 | Msa0183410:CDS |
| TCAAAGAGGCCTCTAACACA+GGG | 0.635552 | 1_4:+72346308 | Msa0183410:CDS |
| ATGTACCTAATGGTGCCACT+AGG | 0.636331 | 1_4:-72346154 | None:intergenic |
| TAAACTCTGTGGTGGCAAAG+TGG | 0.641769 | 1_4:+72346278 | Msa0183410:CDS |
| CATTGGTTCAAGCTTGTGAG+TGG | 0.645311 | 1_4:-72346365 | None:intergenic |
| CACCTGATCTTGGTCAAGGG+GGG | 0.646163 | 1_4:+72346939 | Msa0183410:CDS |
| ACGTCTTTCATGGACAACAA+AGG | 0.652008 | 1_4:+72344072 | Msa0183410:CDS |
| TGACTACTTCTTTGATAACG+GGG | 0.664647 | 1_4:+72344034 | Msa0183410:CDS |
| CTTGCCAATGAGCTTCCTAG+TGG | 0.666218 | 1_4:+72346139 | Msa0183410:CDS |
| ACACCTGATCTTGGTCAAGG+GGG | 0.668650 | 1_4:+72346938 | Msa0183410:CDS |
| TGACGACTACTTTGATTACG+GGG | 0.673218 | 1_4:+72345931 | Msa0183410:CDS |
| TGATGGAGTAAACTCTGTGG+TGG | 0.689773 | 1_4:+72346270 | Msa0183410:CDS |
| TGGAACAACCATCAAAACCA+AGG | 0.703968 | 1_4:+72346234 | Msa0183410:CDS |
| AAAGTGGTTAGGCTTCAAAG+AGG | 0.718391 | 1_4:+72346294 | Msa0183410:CDS |
| ACAGGGAGATATGCAACCAG+AGG | 0.723621 | 1_4:+72346325 | Msa0183410:CDS |
| GTGTGATGGAGTAAACTCTG+TGG | 0.740999 | 1_4:+72346267 | Msa0183410:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATATATATTATTTTTTAT+TGG | - | chr1_4:72340057-72340076 | None:intergenic | 0.0% |
| !!! | TAATATATATTATTTTTTAT+TGG | - | chr1_4:72340057-72340076 | None:intergenic | 0.0% |
| !!! | TTTTTTTTTTTTTAAAATCG+TGG | + | chr1_4:72339819-72339838 | Msa0183410:intron | 10.0% |
| !!! | TGGATTATTTTTTTTATATT+AGG | + | chr1_4:72340567-72340586 | Msa0183410:intron | 10.0% |
| !! | TTGTAAATTAAAGAAAAAAA+TGG | - | chr1_4:72341033-72341052 | None:intergenic | 10.0% |
| !! | ATAAATAAAAAGAAATTGAA+AGG | + | chr1_4:72341645-72341664 | Msa0183410:intron | 10.0% |
| !! | AATAAAATTAGAACATAAAA+AGG | + | chr1_4:72342392-72342411 | Msa0183410:intron | 10.0% |
| !! | ATAAAATTAGAACATAAAAA+GGG | + | chr1_4:72342393-72342412 | Msa0183410:intron | 10.0% |
| !!! | ATCTTATTTTAATATAAACT+TGG | + | chr1_4:72342957-72342976 | Msa0183410:intron | 10.0% |
| !!! | TTTTAATTTGATTTTAATGT+TGG | + | chr1_4:72344647-72344666 | Msa0183410:intron | 10.0% |
| !!! | ATAATTTTGTTATTTACATA+TGG | + | chr1_4:72345071-72345090 | Msa0183410:intron | 10.0% |
| !! | AAGAAAAAATAAATACAATT+TGG | + | chr1_4:72345805-72345824 | Msa0183410:intron | 10.0% |
| !! | AGAAAAAATAAATACAATTT+GGG | + | chr1_4:72345806-72345825 | Msa0183410:intron | 10.0% |
| !!! | ATTCTAAAAAATTTACTAAT+CGG | - | chr1_4:72346650-72346669 | None:intergenic | 10.0% |
| !!! | TAGTAAATTTTTTAGAATAT+TGG | + | chr1_4:72346652-72346671 | Msa0183410:intron | 10.0% |
| !!! | TCTTTAAGTTTTTATTAGAA+TGG | - | chr1_4:72339246-72339265 | None:intergenic | 15.0% |
| !! | ATATTGAACTATATACTTAT+TGG | + | chr1_4:72339266-72339285 | Msa0183410:five_prime_UTR | 15.0% |
| !! | TTTATATAAGATATGTTATC+AGG | - | chr1_4:72339388-72339407 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTATTAAGTAATT+TGG | + | chr1_4:72339952-72339971 | Msa0183410:intron | 15.0% |
| !!! | ATTCTTTCTCTTTTTTTTTA+AGG | + | chr1_4:72341072-72341091 | Msa0183410:intron | 15.0% |
| !! | TATATTAACAAAATGATTAG+AGG | + | chr1_4:72341312-72341331 | Msa0183410:intron | 15.0% |
| !! | TAAATGAACTAAAGAAAATT+GGG | - | chr1_4:72341964-72341983 | None:intergenic | 15.0% |
| !! | TTAAATGAACTAAAGAAAAT+TGG | - | chr1_4:72341965-72341984 | None:intergenic | 15.0% |
| !!! | ATCTAATAGAAATTTTATGA+GGG | - | chr1_4:72342243-72342262 | None:intergenic | 15.0% |
| !!! | AATCTAATAGAAATTTTATG+AGG | - | chr1_4:72342244-72342263 | None:intergenic | 15.0% |
| !!! | TTTGATTTTTTATGTTTACT+TGG | - | chr1_4:72342319-72342338 | None:intergenic | 15.0% |
| !! | TTTAAGGATCTTTAATTATT+AGG | - | chr1_4:72342369-72342388 | None:intergenic | 15.0% |
| !! | AATAATTAAAGATCCTTAAA+TGG | + | chr1_4:72342369-72342388 | Msa0183410:intron | 15.0% |
| !!! | TTCTAATTTTATTCCATTTA+AGG | - | chr1_4:72342385-72342404 | None:intergenic | 15.0% |
| !! | TTTAACAGTGTAAAATATAT+TGG | + | chr1_4:72342692-72342711 | Msa0183410:intron | 15.0% |
| !!! | GTACGTTTTTTTTTTTTTTT+GGG | - | chr1_4:72342917-72342936 | None:intergenic | 15.0% |
| !!! | TGTACGTTTTTTTTTTTTTT+TGG | - | chr1_4:72342918-72342937 | None:intergenic | 15.0% |
| !!! | AAGAAAAGTATTAAGTAATT+TGG | + | chr1_4:72339952-72339971 | Msa0183410:intron | 15.0% |
| !!! | AATGTTAATAGTTAATTTGT+TGG | - | chr1_4:72343915-72343934 | None:intergenic | 15.0% |
| !! | CAAATTAAATATATATCACT+TGG | + | chr1_4:72344350-72344369 | Msa0183410:intron | 15.0% |
| !!! | TTTTGTATTTCTTACAAAAT+AGG | + | chr1_4:72344508-72344527 | Msa0183410:intron | 15.0% |
| !! | TGAAAATAAAATGTTAATGT+TGG | + | chr1_4:72344582-72344601 | Msa0183410:intron | 15.0% |
| !!! | TATTAATTTTATTTAGAGAG+AGG | - | chr1_4:72345132-72345151 | None:intergenic | 15.0% |
| !!! | ATTGTTAACTTTTAGATTTT+TGG | + | chr1_4:72345180-72345199 | Msa0183410:intron | 15.0% |
| !!! | ACACTAAAATGATATAATTT+TGG | + | chr1_4:72345278-72345297 | Msa0183410:intron | 15.0% |
| !! | AATATTTCACATTAATAGTA+TGG | - | chr1_4:72345622-72345641 | None:intergenic | 15.0% |
| !!! | AAATTTTTTTCTCTTTCAAT+TGG | + | chr1_4:72346530-72346549 | Msa0183410:intron | 15.0% |
| !!! | AAAATTTGTTAACTTCTTTA+GGG | + | chr1_4:72347153-72347172 | Msa0183410:CDS | 15.0% |
| !! | AACTATATACTTATTGGTAA+TGG | + | chr1_4:72339272-72339291 | Msa0183410:exon | 20.0% |
| !! | TATCTTAGATTAGAGTTATA+TGG | - | chr1_4:72339461-72339480 | None:intergenic | 20.0% |
| !!! | AATTTTAATCCCTATAAAAG+TGG | + | chr1_4:72340133-72340152 | Msa0183410:intron | 20.0% |
| !! | TATTGTTACAAAAACAAAAC+AGG | + | chr1_4:72340453-72340472 | Msa0183410:intron | 20.0% |
| !!! | TGTTAATTGTTTGAAATTGA+AGG | + | chr1_4:72340523-72340542 | Msa0183410:intron | 20.0% |
| !! | GTACAATAAAATATTCAATC+CGG | + | chr1_4:72340702-72340721 | Msa0183410:intron | 20.0% |
| !!! | AATTGCCATAATAAAGTTTT+TGG | + | chr1_4:72340787-72340806 | Msa0183410:intron | 20.0% |
| !!! | TCTCTACGATTAATTTTTTT+AGG | + | chr1_4:72341115-72341134 | Msa0183410:intron | 20.0% |
| !!! | AATAATGATAATGCAACATA+TGG | - | chr1_4:72341247-72341266 | None:intergenic | 20.0% |
| !! | ACATTAAAGTACATATTAGT+GGG | - | chr1_4:72341612-72341631 | None:intergenic | 20.0% |
| !! | TTTCGCAAATAAACTATTTA+GGG | - | chr1_4:72342047-72342066 | None:intergenic | 20.0% |
| !!! | TTTTCGCAAATAAACTATTT+AGG | - | chr1_4:72342048-72342067 | None:intergenic | 20.0% |
| !!! | TCTAATAGAAATTTTATGAG+GGG | - | chr1_4:72342242-72342261 | None:intergenic | 20.0% |
| !!! | GTTTTTAGTCTTTGAAAAAA+TGG | - | chr1_4:72342290-72342309 | None:intergenic | 20.0% |
| !! | TTTACTCTGTATAGAAAAAA+TGG | - | chr1_4:72342759-72342778 | None:intergenic | 20.0% |
| !!! | ATTGAAATTTTCAATTGAGT+TGG | - | chr1_4:72342788-72342807 | None:intergenic | 20.0% |
| !!! | AATAGACCATCATTTTTTAA+GGG | - | chr1_4:72343146-72343165 | None:intergenic | 20.0% |
| !!! | TAATAGACCATCATTTTTTA+AGG | - | chr1_4:72343147-72343166 | None:intergenic | 20.0% |
| !! | AATATTCTATATTGGCAAAA+TGG | - | chr1_4:72343178-72343197 | None:intergenic | 20.0% |
| !! | CAATGATGAATATTCTATAT+TGG | - | chr1_4:72343186-72343205 | None:intergenic | 20.0% |
| !! | GATTAAATTAATTGCTTGAA+GGG | - | chr1_4:72343220-72343239 | None:intergenic | 20.0% |
| !! | TGATTAAATTAATTGCTTGA+AGG | - | chr1_4:72343221-72343240 | None:intergenic | 20.0% |
| !! | GCAATTAATTTAATCAAAGA+TGG | + | chr1_4:72343225-72343244 | Msa0183410:intron | 20.0% |
| !! | AAAATTCACACATTATCAAT+AGG | - | chr1_4:72343418-72343437 | None:intergenic | 20.0% |
| !!! | AATTTTAATCCCTATAAAAG+TGG | + | chr1_4:72340133-72340152 | Msa0183410:intron | 20.0% |
| !! | GCTAATTAATAAAATAGAGT+TGG | + | chr1_4:72343848-72343867 | Msa0183410:intron | 20.0% |
| !! | TAACATTTAGTTATTTGTCT+GGG | - | chr1_4:72343890-72343909 | None:intergenic | 20.0% |
| !! | TTAACATTTAGTTATTTGTC+TGG | - | chr1_4:72343891-72343910 | None:intergenic | 20.0% |
| !! | CTCACTAATTAAAAATACAA+AGG | - | chr1_4:72343957-72343976 | None:intergenic | 20.0% |
| !! | TTGAAACTAAAAACTTGATT+TGG | + | chr1_4:72343999-72344018 | Msa0183410:intron | 20.0% |
| !! | TATTTATTTATCTTGCAGTT+CGG | + | chr1_4:72344791-72344810 | Msa0183410:intron | 20.0% |
| !! | TATCTATTATTAATTGTTCG+CGG | - | chr1_4:72344851-72344870 | None:intergenic | 20.0% |
| !! | GTCAAAATTAATTTACTTGA+TGG | - | chr1_4:72345397-72345416 | None:intergenic | 20.0% |
| !!! | AAGTGATTGTCTAATTTTTT+TGG | - | chr1_4:72345469-72345488 | None:intergenic | 20.0% |
| !!! | TATATGGTATTTGTTTTCTT+TGG | + | chr1_4:72345494-72345513 | Msa0183410:intron | 20.0% |
| !! | AAATATTGTTCACTTTGTAA+TGG | + | chr1_4:72345635-72345654 | Msa0183410:intron | 20.0% |
| !! | AAAATAAATACAATTTGGGA+CGG | + | chr1_4:72345810-72345829 | Msa0183410:intron | 20.0% |
| !! | AAAATATTACATCTTGTTGA+TGG | + | chr1_4:72346214-72346233 | Msa0183410:CDS | 20.0% |
| !! | TGAATATGCAAAAGAAAAAT+GGG | - | chr1_4:72346506-72346525 | None:intergenic | 20.0% |
| !! | ATGAATATGCAAAAGAAAAA+TGG | - | chr1_4:72346507-72346526 | None:intergenic | 20.0% |
| !! | ATCATAATTGTACTACAATT+TGG | - | chr1_4:72346583-72346602 | None:intergenic | 20.0% |
| !!! | CAAAATTTGTTAACTTCTTT+AGG | + | chr1_4:72347152-72347171 | Msa0183410:CDS | 20.0% |
| !! | TTGTTGAATAAATTCTCTAA+TGG | - | chr1_4:72347323-72347342 | None:intergenic | 20.0% |
| !! | AAGTTTTTATTAGAATGGAG+TGG | - | chr1_4:72339241-72339260 | None:intergenic | 25.0% |
| !!! | ATAGGAGATTTTAGTAAAGA+TGG | - | chr1_4:72339420-72339439 | None:intergenic | 25.0% |
| ! | TACAAACATTACGTTGAAAA+TGG | - | chr1_4:72339509-72339528 | None:intergenic | 25.0% |
| ! | AAGCTTGATATTAGAATCTT+CGG | + | chr1_4:72339617-72339636 | Msa0183410:CDS | 25.0% |
| ! | ACAAATATCTACAACTTCAT+GGG | + | chr1_4:72339730-72339749 | Msa0183410:CDS | 25.0% |
| !!! | TGTTTCATTCCACTTTTATA+GGG | - | chr1_4:72340145-72340164 | None:intergenic | 25.0% |
| !!! | ATGTTTCATTCCACTTTTAT+AGG | - | chr1_4:72340146-72340165 | None:intergenic | 25.0% |
| !! | ATATGATTATGTGTCATTGA+GGG | + | chr1_4:72340208-72340227 | Msa0183410:intron | 25.0% |
| !! | TTTGTGAAGTATTTAAGCAA+CGG | + | chr1_4:72340363-72340382 | Msa0183410:intron | 25.0% |
| !!! | ACACAATTTTGCTATCAATA+TGG | - | chr1_4:72340412-72340431 | None:intergenic | 25.0% |
| !! | ATTGTTTGAAATTGAAGGTA+TGG | + | chr1_4:72340528-72340547 | Msa0183410:intron | 25.0% |
| ! | ATGGATATGTAACAATCAAT+TGG | + | chr1_4:72340547-72340566 | Msa0183410:intron | 25.0% |
| ! | TTAGGTAACTTGACAATTAT+CGG | + | chr1_4:72340585-72340604 | Msa0183410:intron | 25.0% |
| ! | TGCATAATTGTATATATGTC+TGG | + | chr1_4:72340627-72340646 | Msa0183410:intron | 25.0% |
| ! | TTTGGCCAAAAACTTTATTA+TGG | - | chr1_4:72340795-72340814 | None:intergenic | 25.0% |
| ! | ATTCAAAATCTCATTAGCAT+AGG | + | chr1_4:72340917-72340936 | Msa0183410:intron | 25.0% |
| ! | AGAAAAAAATGGTATACACA+TGG | - | chr1_4:72341022-72341041 | None:intergenic | 25.0% |
| ! | AGCAGACTTATATTAGAATT+TGG | + | chr1_4:72341288-72341307 | Msa0183410:intron | 25.0% |
| !!! | GAATATAGATATGATGGATT+TGG | - | chr1_4:72341383-72341402 | None:intergenic | 25.0% |
| ! | ATCTACGAATATAGATATGA+TGG | - | chr1_4:72341389-72341408 | None:intergenic | 25.0% |
| ! | ATAACCTTCATTAGAACATT+CGG | - | chr1_4:72341439-72341458 | None:intergenic | 25.0% |
| ! | ATGTTCTAATGAAGGTTATT+TGG | + | chr1_4:72341440-72341459 | Msa0183410:intron | 25.0% |
| ! | TTGTAAGTAAGTTTCGAATA+TGG | + | chr1_4:72341538-72341557 | Msa0183410:intron | 25.0% |
| ! | TATGGATTCAATGATTCAAA+TGG | + | chr1_4:72341556-72341575 | Msa0183410:intron | 25.0% |
| ! | ATATTAGTGGGATCAATTTA+AGG | - | chr1_4:72341600-72341619 | None:intergenic | 25.0% |
| ! | CACATTAAAGTACATATTAG+TGG | - | chr1_4:72341613-72341632 | None:intergenic | 25.0% |
| !!! | CTTTTTTTCTTCCTTAAAAG+AGG | + | chr1_4:72341781-72341800 | Msa0183410:intron | 25.0% |
| !! | TATACCCTATCACATTTTAA+GGG | - | chr1_4:72341900-72341919 | None:intergenic | 25.0% |
| !! | ATATACCCTATCACATTTTA+AGG | - | chr1_4:72341901-72341920 | None:intergenic | 25.0% |
| ! | TAAAATGTGATAGGGTATAT+AGG | + | chr1_4:72341901-72341920 | Msa0183410:intron | 25.0% |
| ! | AAAATGTGATAGGGTATATA+GGG | + | chr1_4:72341902-72341921 | Msa0183410:intron | 25.0% |
| !!! | TTATTTGCGAAAAGTATTAG+CGG | + | chr1_4:72342055-72342074 | Msa0183410:intron | 25.0% |
| !! | CTAATAGAAATTTTATGAGG+GGG | - | chr1_4:72342241-72342260 | None:intergenic | 25.0% |
| ! | TCTATTAGATTCATCATTGA+CGG | + | chr1_4:72342253-72342272 | Msa0183410:intron | 25.0% |
| ! | ACATCCTTAAAAAAAGACAA+CGG | + | chr1_4:72342431-72342450 | Msa0183410:intron | 25.0% |
| ! | GTAAATGAAAGACAAATACA+AGG | - | chr1_4:72342656-72342675 | None:intergenic | 25.0% |
| ! | TGTCTTTCATTTACTTTCAT+AGG | + | chr1_4:72342662-72342681 | Msa0183410:intron | 25.0% |
| ! | AAAGCTTTCATCAATATCAT+TGG | + | chr1_4:72342831-72342850 | Msa0183410:intron | 25.0% |
| !!! | CATTTTTTAAGGGTTATTCA+TGG | - | chr1_4:72343136-72343155 | None:intergenic | 25.0% |
| ! | GAATAACCCTTAAAAAATGA+TGG | + | chr1_4:72343137-72343156 | Msa0183410:intron | 25.0% |
| !!! | TGTTTCATTCCACTTTTATA+GGG | - | chr1_4:72340145-72340164 | None:intergenic | 25.0% |
| !!! | ATGTTTCATTCCACTTTTAT+AGG | - | chr1_4:72340146-72340165 | None:intergenic | 25.0% |
| !! | ATATGATTATGTGTCATTGA+GGG | + | chr1_4:72340208-72340227 | Msa0183410:intron | 25.0% |
| ! | AGAAAATGAAAGAGTAAGAA+GGG | + | chr1_4:72343975-72343994 | Msa0183410:intron | 25.0% |
| !!! | TGTTTTTTACGATTTTGGTT+TGG | - | chr1_4:72344211-72344230 | None:intergenic | 25.0% |
| ! | TTTGTGTTTGTCATATATTG+CGG | - | chr1_4:72344334-72344353 | None:intergenic | 25.0% |
| ! | ACGTAGACTAAATTTAAATG+CGG | - | chr1_4:72344543-72344562 | None:intergenic | 25.0% |
| ! | AGATAAATAAATATGCGGTT+TGG | - | chr1_4:72344784-72344803 | None:intergenic | 25.0% |
| ! | CTGCAAGATAAATAAATATG+CGG | - | chr1_4:72344789-72344808 | None:intergenic | 25.0% |
| !!! | CAATGTATAGTGTTATTTGT+TGG | + | chr1_4:72345321-72345340 | Msa0183410:intron | 25.0% |
| !!! | TTTGTGTTGATTCTAAAAGT+TGG | - | chr1_4:72345433-72345452 | None:intergenic | 25.0% |
| !!! | ATTTTTTTGGTTGCTATACT+TGG | - | chr1_4:72345456-72345475 | None:intergenic | 25.0% |
| !! | ATACATTTTTGCATTTCCAT+AGG | + | chr1_4:72345709-72345728 | Msa0183410:intron | 25.0% |
| ! | TTATTTGACAATTGAAAGAG+TGG | - | chr1_4:72345774-72345793 | None:intergenic | 25.0% |
| !!! | TTTCAGCCAAAATTTTAACT+AGG | - | chr1_4:72345845-72345864 | None:intergenic | 25.0% |
| !! | GATATTCTAAAAACTTGATC+TGG | + | chr1_4:72345896-72345915 | Msa0183410:intron | 25.0% |
| ! | AAAAACTTGATCTGGAAATT+AGG | + | chr1_4:72345904-72345923 | Msa0183410:intron | 25.0% |
| !!! | TTTCCTTTGTTATTCTTGAA+AGG | - | chr1_4:72345975-72345994 | None:intergenic | 25.0% |
| ! | AAAGAAAAATGGGAAGAAAA+TGG | - | chr1_4:72346496-72346515 | None:intergenic | 25.0% |
| !! | TTTTTCTCTTTCAATTGGAT+TGG | + | chr1_4:72346535-72346554 | Msa0183410:intron | 25.0% |
| ! | AAATTTACTAATCGGTCAAT+TGG | - | chr1_4:72346642-72346661 | None:intergenic | 25.0% |
| !! | ATGATGGGAAATATTAGTAA+AGG | + | chr1_4:72346878-72346897 | Msa0183410:CDS | 25.0% |
| ! | ATTACTGCATCTTATATTGT+GGG | + | chr1_4:72347109-72347128 | Msa0183410:CDS | 25.0% |
| ! | ATAACACAAGTTCATTATCA+TGG | - | chr1_4:72347279-72347298 | None:intergenic | 25.0% |
| TGAAGAAGATATTGTGATTG+TGG | + | chr1_4:72339305-72339324 | Msa0183410:CDS | 30.0% | |
| GAAGAAGATATTGTGATTGT+GGG | + | chr1_4:72339306-72339325 | Msa0183410:CDS | 30.0% | |
| TACTTCATCTACATGATTAG+TGG | + | chr1_4:72339530-72339549 | Msa0183410:intron | 30.0% | |
| ! | TGATATTGATGATTGCAGAT+TGG | + | chr1_4:72339587-72339606 | Msa0183410:intron | 30.0% |
| ! | GATATTGATGATTGCAGATT+GGG | + | chr1_4:72339588-72339607 | Msa0183410:intron | 30.0% |
| TTGATATTAGAATCTTCGGA+TGG | + | chr1_4:72339621-72339640 | Msa0183410:CDS | 30.0% | |
| TAACACTATGGAAAAATGCT+TGG | + | chr1_4:72339667-72339686 | Msa0183410:CDS | 30.0% | |
| CATGAAGTTGTAGATATTTG+TGG | - | chr1_4:72339731-72339750 | None:intergenic | 30.0% | |
| CACAAATATCTACAACTTCA+TGG | + | chr1_4:72339729-72339748 | Msa0183410:CDS | 30.0% | |
| CTAATGAAAGTAAAGTGATC+TGG | + | chr1_4:72340169-72340188 | Msa0183410:intron | 30.0% | |
| ! | CATATGATTATGTGTCATTG+AGG | + | chr1_4:72340207-72340226 | Msa0183410:intron | 30.0% |
| CAATATGTGGTAACTAGTAT+GGG | + | chr1_4:72340237-72340256 | Msa0183410:intron | 30.0% | |
| AATATGTGGTAACTAGTATG+GGG | + | chr1_4:72340238-72340257 | Msa0183410:intron | 30.0% | |
| AAGCAACGGAAAATATTTGA+TGG | + | chr1_4:72340377-72340396 | Msa0183410:intron | 30.0% | |
| !! | AAGACAATTTGGTTTGAATC+CGG | - | chr1_4:72340724-72340743 | None:intergenic | 30.0% |
| TCATGGTTTAGAAGACAATT+TGG | - | chr1_4:72340735-72340754 | None:intergenic | 30.0% | |
| TGAAAAACATTGATCAGACA+GGG | - | chr1_4:72340831-72340850 | None:intergenic | 30.0% | |
| ATGAAAAACATTGATCAGAC+AGG | - | chr1_4:72340832-72340851 | None:intergenic | 30.0% | |
| TTGAATGACATAAAGTGATC+AGG | - | chr1_4:72340903-72340922 | None:intergenic | 30.0% | |
| GGAATTATTCAAGATTGTGT+TGG | + | chr1_4:72341136-72341155 | Msa0183410:intron | 30.0% | |
| ! | GATTGTGTTGGTGTAAAAAA+TGG | + | chr1_4:72341148-72341167 | Msa0183410:intron | 30.0% |
| AAAATCACATGAACTTGAGA+TGG | + | chr1_4:72341672-72341691 | Msa0183410:intron | 30.0% | |
| TGGGATTAAAAACATAGCAT+GGG | - | chr1_4:72341856-72341875 | None:intergenic | 30.0% | |
| AAATGTGATAGGGTATATAG+GGG | + | chr1_4:72341903-72341922 | Msa0183410:intron | 30.0% | |
| !!! | GAAACCGTTGTCTTTTTTTA+AGG | - | chr1_4:72342438-72342457 | None:intergenic | 30.0% |
| ! | GACAAATACAAGGTATTCAT+GGG | - | chr1_4:72342646-72342665 | None:intergenic | 30.0% |
| ! | AGACAAATACAAGGTATTCA+TGG | - | chr1_4:72342647-72342666 | None:intergenic | 30.0% |
| TGGTGAGTTAGTTCAAAAAT+TGG | - | chr1_4:72342739-72342758 | None:intergenic | 30.0% | |
| !!! | AATTTTCAATTGAGTTGGAC+AGG | - | chr1_4:72342783-72342802 | None:intergenic | 30.0% |
| GGTATCGTTATAGAATTCAA+CGG | - | chr1_4:72343008-72343027 | None:intergenic | 30.0% | |
| ATTCTATATTGGCAAAATGG+TGG | - | chr1_4:72343175-72343194 | None:intergenic | 30.0% | |
| ! | CCGCATACATATTACATTTT+CGG | - | chr1_4:72343337-72343356 | None:intergenic | 30.0% |
| CCGAAAATGTAATATGTATG+CGG | + | chr1_4:72343334-72343353 | Msa0183410:intron | 30.0% | |
| ATTCACACATTATCAATAGG+AGG | - | chr1_4:72343415-72343434 | None:intergenic | 30.0% | |
| TAAAGTGATCTCGTAACATT+TGG | + | chr1_4:72343693-72343712 | Msa0183410:intron | 30.0% | |
| ! | CATATGATTATGTGTCATTG+AGG | + | chr1_4:72340207-72340226 | Msa0183410:intron | 30.0% |
| AATCCCTTAATACCTTGTAT+CGG | + | chr1_4:72343803-72343822 | Msa0183410:intron | 30.0% | |
| GAGAAAATGAAAGAGTAAGA+AGG | + | chr1_4:72343974-72343993 | Msa0183410:intron | 30.0% | |
| !! | AAAAACTTGATTTGGAATGC+AGG | + | chr1_4:72344007-72344026 | Msa0183410:intron | 30.0% |
| TGTGACTACTTCTTTGATAA+CGG | + | chr1_4:72344032-72344051 | Msa0183410:CDS | 30.0% | |
| AATATCAACTACGTCTTTCA+TGG | + | chr1_4:72344062-72344081 | Msa0183410:CDS | 30.0% | |
| !!! | GTTTTTCTATTGGATTGGTT+CGG | - | chr1_4:72344172-72344191 | None:intergenic | 30.0% |
| !!! | TTTACGATTTTGGTTTGGAT+TGG | - | chr1_4:72344206-72344225 | None:intergenic | 30.0% |
| CAATTTATTACTCAACTGCA+TGG | + | chr1_4:72344256-72344275 | Msa0183410:intron | 30.0% | |
| CATTGAGTTTCTATGAGTAT+TGG | - | chr1_4:72344377-72344396 | None:intergenic | 30.0% | |
| !! | AATAAATATGCGGTTTGGTT+TGG | - | chr1_4:72344779-72344798 | None:intergenic | 30.0% |
| ! | CGGATTTGCTTTAACAATAT+GGG | + | chr1_4:72344941-72344960 | Msa0183410:CDS | 30.0% |
| TAACAATATGGGAAAATGCT+TGG | + | chr1_4:72344952-72344971 | Msa0183410:CDS | 30.0% | |
| ATCGACATATTCAACTTCAT+GGG | + | chr1_4:72345015-72345034 | Msa0183410:CDS | 30.0% | |
| !!! | GATATAATTTTGGCTTGTAG+TGG | + | chr1_4:72345288-72345307 | Msa0183410:intron | 30.0% |
| GACAATCACTTCTAAGTATA+TGG | + | chr1_4:72345478-72345497 | Msa0183410:intron | 30.0% | |
| TGTAATGGTCAATCTTCATT+AGG | + | chr1_4:72345650-72345669 | Msa0183410:intron | 30.0% | |
| GTCAATCTTCATTAGGAAAT+TGG | + | chr1_4:72345657-72345676 | Msa0183410:intron | 30.0% | |
| ATATACCTACCACTAAAGAA+AGG | - | chr1_4:72345691-72345710 | None:intergenic | 30.0% | |
| ! | ATCCCTCCTAGTTAAAATTT+TGG | + | chr1_4:72345836-72345855 | Msa0183410:intron | 30.0% |
| !!! | AGCCAAAATTTTAACTAGGA+GGG | - | chr1_4:72345841-72345860 | None:intergenic | 30.0% |
| !! | TTTGTTATTCTTGAAAGGTG+TGG | - | chr1_4:72345970-72345989 | None:intergenic | 30.0% |
| ACACCTTTCAAGAATAACAA+AGG | + | chr1_4:72345969-72345988 | Msa0183410:CDS | 30.0% | |
| TGTTAGAAGGAAGTTATTGT+TGG | + | chr1_4:72346111-72346130 | Msa0183410:CDS | 30.0% | |
| !!! | GTGTTTATTGGTTTTTCACA+TGG | + | chr1_4:72346446-72346465 | Msa0183410:CDS | 30.0% |
| AAGAAAATGGTATTTCACCT+TGG | - | chr1_4:72346483-72346502 | None:intergenic | 30.0% | |
| ! | GAAGTGATTAGTTCATTAGT+TGG | - | chr1_4:72346610-72346629 | None:intergenic | 30.0% |
| TGTAAAACATGTCAAGAAAG+TGG | - | chr1_4:72346705-72346724 | None:intergenic | 30.0% | |
| CATATTGTTTCAGATTAGCA+GGG | - | chr1_4:72346748-72346767 | None:intergenic | 30.0% | |
| ACATATTGTTTCAGATTAGC+AGG | - | chr1_4:72346749-72346768 | None:intergenic | 30.0% | |
| ! | TGCTAATCTGAAACAATATG+TGG | + | chr1_4:72346748-72346767 | Msa0183410:CDS | 30.0% |
| ATTGAGATATAGACATCCTT+GGG | + | chr1_4:72346850-72346869 | Msa0183410:CDS | 30.0% | |
| AAAGGAAATGTTTGTGTTGT+TGG | + | chr1_4:72346896-72346915 | Msa0183410:CDS | 30.0% | |
| TTGTATTCTTCTTCTTCCTT+TGG | - | chr1_4:72347028-72347047 | None:intergenic | 30.0% | |
| AGGAAGAAGAAGAATACAAA+AGG | + | chr1_4:72347029-72347048 | Msa0183410:CDS | 30.0% | |
| AGAAGAATACAAAAGGATTG+AGG | + | chr1_4:72347036-72347055 | Msa0183410:CDS | 30.0% | |
| AATATGCAAGTGAGAGAAAA+TGG | + | chr1_4:72347071-72347090 | Msa0183410:CDS | 30.0% | |
| CATTACTGCATCTTATATTG+TGG | + | chr1_4:72347108-72347127 | Msa0183410:CDS | 30.0% | |
| ! | CTTCTTTAGGGATAAAATTC+TGG | + | chr1_4:72347165-72347184 | Msa0183410:CDS | 30.0% |
| !!! | AAGAAGTCAGATTTTGATTG+TGG | + | chr1_4:72347214-72347233 | Msa0183410:CDS | 30.0% |
| ! | GTGGATTTGCTTTAACACTA+TGG | + | chr1_4:72339655-72339674 | Msa0183410:CDS | 35.0% |
| TAAAGTGATCTGGTAACATC+TGG | + | chr1_4:72340179-72340198 | Msa0183410:intron | 35.0% | |
| GCAATATGTGGTAACTAGTA+TGG | + | chr1_4:72340236-72340255 | Msa0183410:intron | 35.0% | |
| AGAATGACTATGGTACAAAG+TGG | - | chr1_4:72340758-72340777 | None:intergenic | 35.0% | |
| TCTCATACTGAGAATGACTA+TGG | - | chr1_4:72340768-72340787 | None:intergenic | 35.0% | |
| !!! | CATTTTTAAGTCTCAGCTTG+TGG | + | chr1_4:72340868-72340887 | Msa0183410:intron | 35.0% |
| ! | TTTTCCTAAACCTCAACTTG+TGG | + | chr1_4:72340944-72340963 | Msa0183410:intron | 35.0% |
| GTATTTCAAACCACAAGTTG+AGG | - | chr1_4:72340957-72340976 | None:intergenic | 35.0% | |
| TTCACCGAATGTTCTAATGA+AGG | + | chr1_4:72341432-72341451 | Msa0183410:intron | 35.0% | |
| AAGAGAGAGTCCTTATACAA+TGG | + | chr1_4:72341738-72341757 | Msa0183410:intron | 35.0% | |
| TAGTTACCGACCATTGTATA+AGG | - | chr1_4:72341751-72341770 | None:intergenic | 35.0% | |
| TTCCTTAAAAGAGGTCCTTA+TGG | + | chr1_4:72341790-72341809 | Msa0183410:intron | 35.0% | |
| GATTAAAAACATAGCATGGG+GGG | - | chr1_4:72341853-72341872 | None:intergenic | 35.0% | |
| GGATTAAAAACATAGCATGG+GGG | - | chr1_4:72341854-72341873 | None:intergenic | 35.0% | |
| GGGATTAAAAACATAGCATG+GGG | - | chr1_4:72341855-72341874 | None:intergenic | 35.0% | |
| GTGGGATTAAAAACATAGCA+TGG | - | chr1_4:72341857-72341876 | None:intergenic | 35.0% | |
| TTAAAAACCGCTATTGCTAG+CGG | + | chr1_4:72342537-72342556 | Msa0183410:intron | 35.0% | |
| ACTATGTTATTCCATGGTAG+CGG | + | chr1_4:72342601-72342620 | Msa0183410:intron | 35.0% | |
| CAAAAATTGGACTGTCATAC+AGG | - | chr1_4:72342726-72342745 | None:intergenic | 35.0% | |
| TCTGAACCTCATTAGCAAAA+GGG | - | chr1_4:72343266-72343285 | None:intergenic | 35.0% | |
| TTCTGAACCTCATTAGCAAA+AGG | - | chr1_4:72343267-72343286 | None:intergenic | 35.0% | |
| TAACGTCACAAACAGATAGT+TGG | - | chr1_4:72343386-72343405 | None:intergenic | 35.0% | |
| TTGCAATATGTGGTAAAGTG+AGG | + | chr1_4:72343748-72343767 | Msa0183410:intron | 35.0% | |
| TGCAATATGTGGTAAAGTGA+GGG | + | chr1_4:72343749-72343768 | Msa0183410:intron | 35.0% | |
| TAAAATAGAGTTGGAAGTCC+TGG | + | chr1_4:72343857-72343876 | Msa0183410:intron | 35.0% | |
| !!! | ATTTGTCTGGGTTTTATTCC+AGG | - | chr1_4:72343878-72343897 | None:intergenic | 35.0% |
| ! | GTGACTACTTCTTTGATAAC+GGG | + | chr1_4:72344033-72344052 | Msa0183410:CDS | 35.0% |
| !! | TGACTACTTCTTTGATAACG+GGG | + | chr1_4:72344034-72344053 | Msa0183410:CDS | 35.0% |
| ! | GTTTTCTTGAAACACTAGCT+TGG | - | chr1_4:72344150-72344169 | None:intergenic | 35.0% |
| ! | TTGCGGTTTTTCTATTGGAT+TGG | - | chr1_4:72344177-72344196 | None:intergenic | 35.0% |
| !!! | GATTTTGGTTTGGATTGGTT+CGG | - | chr1_4:72344201-72344220 | None:intergenic | 35.0% |
| TATTACTCAACTGCATGGTT+TGG | + | chr1_4:72344261-72344280 | Msa0183410:intron | 35.0% | |
| !! | TCATATATTGCGGTTTGGTT+TGG | - | chr1_4:72344324-72344343 | None:intergenic | 35.0% |
| GTTTGTCATATATTGCGGTT+TGG | - | chr1_4:72344329-72344348 | None:intergenic | 35.0% | |
| ATTATTAATTGTTCGCGGTG+CGG | - | chr1_4:72344846-72344865 | None:intergenic | 35.0% | |
| GATGCTGATAATTGCAGATT+AGG | + | chr1_4:72344873-72344892 | Msa0183410:intron | 35.0% | |
| ! | GCGGATTTGCTTTAACAATA+TGG | + | chr1_4:72344940-72344959 | Msa0183410:CDS | 35.0% |
| AATATGGGAAAATGCTTGGA+AGG | + | chr1_4:72344956-72344975 | Msa0183410:CDS | 35.0% | |
| CATGAAGTTGAATATGTCGA+TGG | - | chr1_4:72345016-72345035 | None:intergenic | 35.0% | |
| CATCGACATATTCAACTTCA+TGG | + | chr1_4:72345014-72345033 | Msa0183410:CDS | 35.0% | |
| !! | TGGAGTGTTGCTATTTAGTA+TGG | + | chr1_4:72345200-72345219 | Msa0183410:intron | 35.0% |
| AAATATCACCAGAACAGAAG+AGG | + | chr1_4:72345236-72345255 | Msa0183410:intron | 35.0% | |
| GATTATCGACCTTTCTTTAG+TGG | + | chr1_4:72345679-72345698 | Msa0183410:intron | 35.0% | |
| ACAATTGAAAGAGTGGAACT+TGG | - | chr1_4:72345767-72345786 | None:intergenic | 35.0% | |
| !!! | CAGCCAAAATTTTAACTAGG+AGG | - | chr1_4:72345842-72345861 | None:intergenic | 35.0% |
| TGTGACGACTACTTTGATTA+CGG | + | chr1_4:72345929-72345948 | Msa0183410:CDS | 35.0% | |
| AACCTTTGACATGTACCTAA+TGG | - | chr1_4:72346167-72346186 | None:intergenic | 35.0% | |
| !!! | AATCAACACCTTGGTTTTGA+TGG | - | chr1_4:72346245-72346264 | None:intergenic | 35.0% |
| !! | ATCAAAACCAAGGTGTTGAT+TGG | + | chr1_4:72346244-72346263 | Msa0183410:CDS | 35.0% |
| !! | TCAAAACCAAGGTGTTGATT+GGG | + | chr1_4:72346245-72346264 | Msa0183410:CDS | 35.0% |
| ! | CTCTTTCAATTGGATTGGAT+CGG | + | chr1_4:72346540-72346559 | Msa0183410:intron | 35.0% |
| CAAGGATGTCTATATCTCAA+TGG | - | chr1_4:72346851-72346870 | None:intergenic | 35.0% | |
| CATTGAGATATAGACATCCT+TGG | + | chr1_4:72346849-72346868 | Msa0183410:CDS | 35.0% | |
| ! | TTCCTTTGGTTTCTTGGAAA+AGG | - | chr1_4:72347014-72347033 | None:intergenic | 35.0% |
| ! | TTCTTCTTCCTTTGGTTTCT+TGG | - | chr1_4:72347020-72347039 | None:intergenic | 35.0% |
| ! | GTGGGTTATATTCAACAAAG+TGG | + | chr1_4:72347127-72347146 | Msa0183410:CDS | 35.0% |
| ACAATACCTGTGAAGTCCTA+AGG | - | chr1_4:72339358-72339377 | None:intergenic | 40.0% | |
| ACTATGGAAAAATGCTTGGC+AGG | + | chr1_4:72339671-72339690 | Msa0183410:CDS | 40.0% | |
| TCCAACACCAATAACATCCA+AGG | - | chr1_4:72339697-72339716 | None:intergenic | 40.0% | |
| GTTGTAGATATTTGTGGCGA+AGG | - | chr1_4:72339725-72339744 | None:intergenic | 40.0% | |
| GGTTGTTGCAATGCATATTG+TGG | + | chr1_4:72339840-72339859 | Msa0183410:intron | 40.0% | |
| TTGAGGGACATTGCAATATG+TGG | + | chr1_4:72340224-72340243 | Msa0183410:intron | 40.0% | |
| TAACAATTCTTACCCGTGCT+TGG | - | chr1_4:72340270-72340289 | None:intergenic | 40.0% | |
| TCGTTCAAGTATGTTTGGGT+TGG | - | chr1_4:72340488-72340507 | None:intergenic | 40.0% | |
| ACCCAAACATACTTGAACGA+TGG | + | chr1_4:72340488-72340507 | Msa0183410:intron | 40.0% | |
| GCCATCGTTCAAGTATGTTT+GGG | - | chr1_4:72340492-72340511 | None:intergenic | 40.0% | |
| TGCCATCGTTCAAGTATGTT+TGG | - | chr1_4:72340493-72340512 | None:intergenic | 40.0% | |
| ACTATGGTACAAAGTGGTCA+TGG | - | chr1_4:72340752-72340771 | None:intergenic | 40.0% | |
| CAGGGTAATAGTCAGTGATT+TGG | - | chr1_4:72340813-72340832 | None:intergenic | 40.0% | |
| TTAAGTCTCAGCTTGTGGTT+CGG | + | chr1_4:72340873-72340892 | Msa0183410:intron | 40.0% | |
| ! | CAAACCACAAGTTGAGGTTT+AGG | - | chr1_4:72340951-72340970 | None:intergenic | 40.0% |
| GCTATTGTTGTGTCTTTGCA+TGG | - | chr1_4:72341271-72341290 | None:intergenic | 40.0% | |
| GAGAGTCCTTATACAATGGT+CGG | + | chr1_4:72341742-72341761 | Msa0183410:intron | 40.0% | |
| ! | CTCCATAAGGACCTCTTTTA+AGG | - | chr1_4:72341795-72341814 | None:intergenic | 40.0% |
| ! | GAACATAGAGCATCTCCATA+AGG | - | chr1_4:72341808-72341827 | None:intergenic | 40.0% |
| ! | GGTGTTATGCGATGTTATGT+GGG | - | chr1_4:72341875-72341894 | None:intergenic | 40.0% |
| ACCGACCCTTAAAATGTGAT+AGG | + | chr1_4:72341892-72341911 | Msa0183410:intron | 40.0% | |
| !! | CCCTATCACATTTTAAGGGT+CGG | - | chr1_4:72341896-72341915 | None:intergenic | 40.0% |
| CCGACCCTTAAAATGTGATA+GGG | + | chr1_4:72341893-72341912 | Msa0183410:intron | 40.0% | |
| ATAGGGTATATAGGGGTTGA+GGG | + | chr1_4:72341910-72341929 | Msa0183410:intron | 40.0% | |
| CATCTGACATTAGGGTTTCA+AGG | - | chr1_4:72342486-72342505 | None:intergenic | 40.0% | |
| CTCTGTCACATCTGACATTA+GGG | - | chr1_4:72342494-72342513 | None:intergenic | 40.0% | |
| ! | GCTAGCAATAGCGGTTTTTA+AGG | - | chr1_4:72342538-72342557 | None:intergenic | 40.0% |
| GGAATAACATAGTGGTGGTA+GGG | - | chr1_4:72342594-72342613 | None:intergenic | 40.0% | |
| TGGAATAACATAGTGGTGGT+AGG | - | chr1_4:72342595-72342614 | None:intergenic | 40.0% | |
| ACCACCACTATGTTATTCCA+TGG | + | chr1_4:72342595-72342614 | Msa0183410:intron | 40.0% | |
| ACCATGGAATAACATAGTGG+TGG | - | chr1_4:72342599-72342618 | None:intergenic | 40.0% | |
| GCTACCATGGAATAACATAG+TGG | - | chr1_4:72342602-72342621 | None:intergenic | 40.0% | |
| TCTATAACGATACCCTCAGA+TGG | + | chr1_4:72343014-72343033 | Msa0183410:intron | 40.0% | |
| TTCGTTAAGCATCCATCTGA+GGG | - | chr1_4:72343029-72343048 | None:intergenic | 40.0% | |
| ATTCGTTAAGCATCCATCTG+AGG | - | chr1_4:72343030-72343049 | None:intergenic | 40.0% | |
| AGGTTCAGAATGTCAGTTGA+TGG | + | chr1_4:72343277-72343296 | Msa0183410:intron | 40.0% | |
| TTGAGGGACATTGCAATATG+TGG | + | chr1_4:72340224-72340243 | Msa0183410:intron | 40.0% | |
| GGTAAAGTGAGGGATTCATT+TGG | + | chr1_4:72343759-72343778 | Msa0183410:intron | 40.0% | |
| GATTCCTTTAAGTCCACCAA+GGG | - | chr1_4:72343787-72343806 | None:intergenic | 40.0% | |
| ! | CCACCGATACAAGGTATTAA+GGG | - | chr1_4:72343809-72343828 | None:intergenic | 40.0% |
| ! | ACCACCGATACAAGGTATTA+AGG | - | chr1_4:72343810-72343829 | None:intergenic | 40.0% |
| ! | TAATACCTTGTATCGGTGGT+TGG | + | chr1_4:72343810-72343829 | Msa0183410:intron | 40.0% |
| ! | AATACCTTGTATCGGTGGTT+GGG | + | chr1_4:72343811-72343830 | Msa0183410:intron | 40.0% |
| ACGTCTTTCATGGACAACAA+AGG | + | chr1_4:72344072-72344091 | Msa0183410:CDS | 40.0% | |
| !! | TCGGTTTGCGGTTTTTCTAT+TGG | - | chr1_4:72344182-72344201 | None:intergenic | 40.0% |
| !! | TTGGTTTGGTTTGGTTAGGT+TGG | - | chr1_4:72344310-72344329 | None:intergenic | 40.0% |
| !! | TATTGCGGTTTGGTTTGGTT+TGG | - | chr1_4:72344319-72344338 | None:intergenic | 40.0% |
| CAAACCAAACCAAACCATTG+CGG | - | chr1_4:72344726-72344745 | None:intergenic | 40.0% | |
| !! | TGGTTTGGTTTGGTTTGGTT+CGG | + | chr1_4:72344729-72344748 | Msa0183410:intron | 40.0% |
| !! | ATATGCGGTTTGGTTTGGTT+CGG | - | chr1_4:72344774-72344793 | None:intergenic | 40.0% |
| ! | TCGAATAGTTTGCGAGTAAG+CGG | + | chr1_4:72344921-72344940 | Msa0183410:CDS | 40.0% |
| !! | TTGGCTTGTAGTGGAAATCA+TGG | + | chr1_4:72345297-72345316 | Msa0183410:intron | 40.0% |
| ATCGACCTTTCTTTAGTGGT+AGG | + | chr1_4:72345683-72345702 | Msa0183410:intron | 40.0% | |
| GAATTCGAGACACTGCTTTA+TGG | + | chr1_4:72345734-72345753 | Msa0183410:intron | 40.0% | |
| GTGACGACTACTTTGATTAC+GGG | + | chr1_4:72345930-72345949 | Msa0183410:CDS | 40.0% | |
| TGACGACTACTTTGATTACG+GGG | + | chr1_4:72345931-72345950 | Msa0183410:CDS | 40.0% | |
| GTGAAGTTCGTTGTGTTAGA+AGG | + | chr1_4:72346098-72346117 | Msa0183410:intron | 40.0% | |
| CACCATTAGGTACATGTCAA+AGG | + | chr1_4:72346162-72346181 | Msa0183410:CDS | 40.0% | |
| ! | GTCAAAGGTTGTTGCTATTC+AGG | + | chr1_4:72346177-72346196 | Msa0183410:CDS | 40.0% |
| ! | GTTGTTGCTATTCAGGAATC+TGG | + | chr1_4:72346184-72346203 | Msa0183410:CDS | 40.0% |
| TGGAACAACCATCAAAACCA+AGG | + | chr1_4:72346234-72346253 | Msa0183410:CDS | 40.0% | |
| AAAGTGGTTAGGCTTCAAAG+AGG | + | chr1_4:72346294-72346313 | Msa0183410:CDS | 40.0% | |
| CTTTAACTCTGCATAACCTC+TGG | - | chr1_4:72346344-72346363 | None:intergenic | 40.0% | |
| !! | CCAAAGTACTGCATGAACAT+TGG | - | chr1_4:72346385-72346404 | None:intergenic | 40.0% |
| CCAATGTTCATGCAGTACTT+TGG | + | chr1_4:72346382-72346401 | Msa0183410:CDS | 40.0% | |
| TTCATGCAGTACTTTGGCAA+AGG | + | chr1_4:72346388-72346407 | Msa0183410:CDS | 40.0% | |
| !!! | TTTGGCAAAGGTTTTAGAGC+TGG | + | chr1_4:72346400-72346419 | Msa0183410:CDS | 40.0% |
| !!! | TTGGCAAAGGTTTTAGAGCT+GGG | + | chr1_4:72346401-72346420 | Msa0183410:CDS | 40.0% |
| TAAACACTCCTCTCATCACA+TGG | - | chr1_4:72346433-72346452 | None:intergenic | 40.0% | |
| !! | GTGATGAGAGGAGTGTTTAT+TGG | + | chr1_4:72346434-72346453 | Msa0183410:CDS | 40.0% |
| GGTATTTCACCTTGGCTAAT+AGG | - | chr1_4:72346475-72346494 | None:intergenic | 40.0% | |
| TCTTCAACAGTTGAACAGCT+AGG | - | chr1_4:72347198-72347217 | None:intergenic | 40.0% | |
| GATATTGTGATTGTGGGAGC+TGG | + | chr1_4:72339312-72339331 | Msa0183410:CDS | 45.0% | |
| TCCTAAGGATGTTGTGAGTC+CGG | - | chr1_4:72339343-72339362 | None:intergenic | 45.0% | |
| CAACATCCTTAGGACTTCAC+AGG | + | chr1_4:72339349-72339368 | Msa0183410:CDS | 45.0% | |
| GCCTTGGATGTTATTGGTGT+TGG | + | chr1_4:72339693-72339712 | Msa0183410:CDS | 45.0% | |
| !! | CGGTGTTATGCGATGTTATG+TGG | - | chr1_4:72341876-72341895 | None:intergenic | 45.0% |
| GATAGGGTATATAGGGGTTG+AGG | + | chr1_4:72341909-72341928 | Msa0183410:intron | 45.0% | |
| CCTCTGTCACATCTGACATT+AGG | - | chr1_4:72342495-72342514 | None:intergenic | 45.0% | |
| CCTAATGTCAGATGTGACAG+AGG | + | chr1_4:72342492-72342511 | Msa0183410:intron | 45.0% | |
| TATTGCTAGCGGCAACTTGT+GGG | + | chr1_4:72342548-72342567 | Msa0183410:intron | 45.0% | |
| ! | TCACCACCCTTTTGCTAATG+AGG | + | chr1_4:72343257-72343276 | Msa0183410:intron | 45.0% |
| GAACCTCATTAGCAAAAGGG+TGG | - | chr1_4:72343263-72343282 | None:intergenic | 45.0% | |
| AGGGATTCATTTGGTACCCT+TGG | + | chr1_4:72343768-72343787 | Msa0183410:intron | 45.0% | |
| GATTCATTTGGTACCCTTGG+TGG | + | chr1_4:72343771-72343790 | Msa0183410:intron | 45.0% | |
| GGATTCCTTTAAGTCCACCA+AGG | - | chr1_4:72343788-72343807 | None:intergenic | 45.0% | |
| CCCTTAATACCTTGTATCGG+TGG | + | chr1_4:72343806-72343825 | Msa0183410:intron | 45.0% | |
| !! | GTTTGGATTGGTTCGGTTTG+CGG | - | chr1_4:72344194-72344213 | None:intergenic | 45.0% |
| !! | CTCAACTGCATGGTTTGGTT+CGG | + | chr1_4:72344266-72344285 | Msa0183410:intron | 45.0% |
| !! | CGGTTTGGTTTGGTTTGGTT+AGG | - | chr1_4:72344314-72344333 | None:intergenic | 45.0% |
| ! | CATTGCGGTTTGGATTGGAT+CGG | - | chr1_4:72344711-72344730 | None:intergenic | 45.0% |
| ! | CAAACCATTGCGGTTTGGAT+TGG | - | chr1_4:72344716-72344735 | None:intergenic | 45.0% |
| CAATCCAAACCGCAATGGTT+TGG | + | chr1_4:72344714-72344733 | Msa0183410:intron | 45.0% | |
| CAAACCAAACCATTGCGGTT+TGG | - | chr1_4:72344721-72344740 | None:intergenic | 45.0% | |
| !! | CAAACCGCAATGGTTTGGTT+TGG | + | chr1_4:72344719-72344738 | Msa0183410:intron | 45.0% |
| !! | CGCAATGGTTTGGTTTGGTT+TGG | + | chr1_4:72344724-72344743 | Msa0183410:intron | 45.0% |
| TCCAACACCAACAACATCCA+AGG | - | chr1_4:72344982-72345001 | None:intergenic | 45.0% | |
| GTTGAATATGTCGATGGCGA+AGG | - | chr1_4:72345010-72345029 | None:intergenic | 45.0% | |
| TATCACCAGAACAGAAGAGG+CGG | + | chr1_4:72345239-72345258 | Msa0183410:intron | 45.0% | |
| TCTTTGGTCGTCGTAACGTA+AGG | + | chr1_4:72345510-72345529 | Msa0183410:intron | 45.0% | |
| AGTGTCTCGAATTCGACCTA+TGG | - | chr1_4:72345728-72345747 | None:intergenic | 45.0% | |
| ACACAACGAACTTCACTGCT+TGG | - | chr1_4:72346094-72346113 | None:intergenic | 45.0% | |
| !! | ATGTACCTAATGGTGCCACT+AGG | - | chr1_4:72346157-72346176 | None:intergenic | 45.0% |
| ATCACACCCAATCAACACCT+TGG | - | chr1_4:72346254-72346273 | None:intergenic | 45.0% | |
| !! | AAGGTGTTGATTGGGTGTGA+TGG | + | chr1_4:72346253-72346272 | Msa0183410:CDS | 45.0% |
| ! | GTGTGATGGAGTAAACTCTG+TGG | + | chr1_4:72346267-72346286 | Msa0183410:CDS | 45.0% |
| TGATGGAGTAAACTCTGTGG+TGG | + | chr1_4:72346270-72346289 | Msa0183410:CDS | 45.0% | |
| TAAACTCTGTGGTGGCAAAG+TGG | + | chr1_4:72346278-72346297 | Msa0183410:CDS | 45.0% | |
| TTCAAAGAGGCCTCTAACAC+AGG | + | chr1_4:72346307-72346326 | Msa0183410:CDS | 45.0% | |
| TCAAAGAGGCCTCTAACACA+GGG | + | chr1_4:72346308-72346327 | Msa0183410:CDS | 45.0% | |
| TGCATATCTCCCTGTGTTAG+AGG | - | chr1_4:72346320-72346339 | None:intergenic | 45.0% | |
| !! | CATTGGTTCAAGCTTGTGAG+TGG | - | chr1_4:72346368-72346387 | None:intergenic | 45.0% |
| !!! | TGGCAAAGGTTTTAGAGCTG+GGG | + | chr1_4:72346402-72346421 | Msa0183410:CDS | 45.0% |
| ACATGGACTCCTATTAGCCA+AGG | + | chr1_4:72346463-72346482 | Msa0183410:CDS | 45.0% | |
| ACATCCTTGGGAGCTTATGA+TGG | + | chr1_4:72346862-72346881 | Msa0183410:CDS | 45.0% | |
| CATCCTTGGGAGCTTATGAT+GGG | + | chr1_4:72346863-72346882 | Msa0183410:CDS | 45.0% | |
| TTTCCCATCATAAGCTCCCA+AGG | - | chr1_4:72346869-72346888 | None:intergenic | 45.0% | |
| ! | GACCAAGATCAGGTGTCATA+GGG | - | chr1_4:72346934-72346953 | None:intergenic | 45.0% |
| ! | TGACCAAGATCAGGTGTCAT+AGG | - | chr1_4:72346935-72346954 | None:intergenic | 45.0% |
| ATGACACCTGATCTTGGTCA+AGG | + | chr1_4:72346935-72346954 | Msa0183410:CDS | 45.0% | |
| TGACACCTGATCTTGGTCAA+GGG | + | chr1_4:72346936-72346955 | Msa0183410:CDS | 45.0% | |
| !! | GGTGTTGTGCTTTAGAGGAT+GGG | + | chr1_4:72346960-72346979 | Msa0183410:CDS | 45.0% |
| !! | GTGTTGTGCTTTAGAGGATG+GGG | + | chr1_4:72346961-72346980 | Msa0183410:CDS | 45.0% |
| TGGTTTCTTGGAAAAGGCCT+CGG | - | chr1_4:72347008-72347027 | None:intergenic | 45.0% | |
| ! | GGCCTTTTCCAAGAAACCAA+AGG | + | chr1_4:72347009-72347028 | Msa0183410:CDS | 45.0% |
| !!! | ATAAAAAATATAGTTTTAAT+AGG | - | chr1_4:72339438-72339457 | None:intergenic | 5.0% |
| !! | ATATAGAAATTAATTATTAA+TGG | + | chr1_4:72339564-72339583 | Msa0183410:intron | 5.0% |
| !!! | TTAATATTTTATTTTTCTTT+TGG | - | chr1_4:72339889-72339908 | None:intergenic | 5.0% |
| !!! | TTTTAAATTTTTATTACAAA+TGG | - | chr1_4:72340327-72340346 | None:intergenic | 5.0% |
| ATTGTGGGAGCTGGAATTGC+CGG | + | chr1_4:72339321-72339340 | Msa0183410:CDS | 50.0% | |
| TCGGATGGTTTGAGAGTGAG+TGG | + | chr1_4:72339636-72339655 | Msa0183410:CDS | 50.0% | |
| GAAAAATGCTTGGCAGGCCT+TGG | + | chr1_4:72339677-72339696 | Msa0183410:CDS | 50.0% | |
| TGGCAGGCCTTGGATGTTAT+TGG | + | chr1_4:72339687-72339706 | Msa0183410:CDS | 50.0% | |
| ATTCTTACCCGTGCTTGGCA+CGG | - | chr1_4:72340265-72340284 | None:intergenic | 50.0% | |
| !! | GGTTGAGGGTATTGTCGTGT+CGG | + | chr1_4:72341924-72341943 | Msa0183410:intron | 50.0% |
| !! | GTTGAGGGTATTGTCGTGTC+GGG | + | chr1_4:72341925-72341944 | Msa0183410:intron | 50.0% |
| !! | TTGAGGGTATTGTCGTGTCG+GGG | + | chr1_4:72341926-72341945 | Msa0183410:intron | 50.0% |
| TGTCAGATGTGACAGAGGCT+TGG | + | chr1_4:72342497-72342516 | Msa0183410:intron | 50.0% | |
| GTCAGATGTGACAGAGGCTT+GGG | + | chr1_4:72342498-72342517 | Msa0183410:intron | 50.0% | |
| TCAGATGTGACAGAGGCTTG+GGG | + | chr1_4:72342499-72342518 | Msa0183410:intron | 50.0% | |
| CAAGTTGCCGCTAGCAATAG+CGG | - | chr1_4:72342547-72342566 | None:intergenic | 50.0% | |
| CTATTGCTAGCGGCAACTTG+TGG | + | chr1_4:72342547-72342566 | Msa0183410:intron | 50.0% | |
| ACATAGTGGTGGTAGGGTTC+AGG | - | chr1_4:72342588-72342607 | None:intergenic | 50.0% | |
| !! | GGTACCCTTGGTGGACTTAA+AGG | + | chr1_4:72343780-72343799 | Msa0183410:intron | 50.0% |
| TGAACCCAACCACCGATACA+AGG | - | chr1_4:72343818-72343837 | None:intergenic | 50.0% | |
| !! | GCATGGTTTGGTTCGGTTTG+CGG | + | chr1_4:72344273-72344292 | Msa0183410:intron | 50.0% |
| CGATCCAATCCAAACCGCAA+TGG | + | chr1_4:72344709-72344728 | Msa0183410:intron | 50.0% | |
| !!! | TGCGGTTTGGTTCGGTTTTG+AGG | - | chr1_4:72344828-72344847 | None:intergenic | 50.0% |
| TAATTGTTCGCGGTGCGGTT+TGG | - | chr1_4:72344841-72344860 | None:intergenic | 50.0% | |
| GGAAAATGCTTGGAAGGCCT+TGG | + | chr1_4:72344962-72344981 | Msa0183410:CDS | 50.0% | |
| TGGAAGGCCTTGGATGTTGT+TGG | + | chr1_4:72344972-72344991 | Msa0183410:CDS | 50.0% | |
| GCCTTGGATGTTGTTGGTGT+TGG | + | chr1_4:72344978-72344997 | Msa0183410:CDS | 50.0% | |
| TGTAACCGCCTCTTCTGTTC+TGG | - | chr1_4:72345247-72345266 | None:intergenic | 50.0% | |
| CTTGCCAATGAGCTTCCTAG+TGG | + | chr1_4:72346139-72346158 | Msa0183410:CDS | 50.0% | |
| AGCTTCCTAGTGGCACCATT+AGG | + | chr1_4:72346149-72346168 | Msa0183410:CDS | 50.0% | |
| TCTGTGGTGGCAAAGTGGTT+AGG | + | chr1_4:72346283-72346302 | Msa0183410:CDS | 50.0% | |
| ACAGGGAGATATGCAACCAG+AGG | + | chr1_4:72346325-72346344 | Msa0183410:CDS | 50.0% | |
| CACCCTATGACACCTGATCT+TGG | + | chr1_4:72346929-72346948 | Msa0183410:CDS | 50.0% | |
| GACACCTGATCTTGGTCAAG+GGG | + | chr1_4:72346937-72346956 | Msa0183410:CDS | 50.0% | |
| ACACCTGATCTTGGTCAAGG+GGG | + | chr1_4:72346938-72346957 | Msa0183410:CDS | 50.0% | |
| !! | GGGTGTTGTGCTTTAGAGGA+TGG | + | chr1_4:72346959-72346978 | Msa0183410:CDS | 50.0% |
| !! | TTGTGCTTTAGAGGATGGGG+TGG | + | chr1_4:72346964-72346983 | Msa0183410:CDS | 50.0% |
| !!! | AGGATGGGGTGGTTTTAGCA+AGG | + | chr1_4:72346975-72346994 | Msa0183410:CDS | 50.0% |
| ! | TTTAGCAAGGTGCTTAGCCG+AGG | + | chr1_4:72346988-72347007 | Msa0183410:CDS | 50.0% |
| GCCGGACTCACAACATCCTT+AGG | + | chr1_4:72339339-72339358 | Msa0183410:CDS | 55.0% | |
| TTCTTACCCGTGCTTGGCAC+GGG | - | chr1_4:72340264-72340283 | None:intergenic | 55.0% | |
| ! | GGGTTCAGGCGAGATGCTTT+TGG | - | chr1_4:72342574-72342593 | None:intergenic | 55.0% |
| ! | CGTCATTAGTGCCGCTACCA+TGG | - | chr1_4:72342615-72342634 | None:intergenic | 55.0% |
| ! | GCGGTTTGGATTGGATCGGT+TGG | - | chr1_4:72344707-72344726 | None:intergenic | 55.0% |
| !! | GGTGCCACTAGGAAGCTCAT+TGG | - | chr1_4:72346146-72346165 | None:intergenic | 55.0% |
| GGGCTCTTCCATGTGATGAG+AGG | + | chr1_4:72346422-72346441 | Msa0183410:CDS | 55.0% | |
| CACCTGATCTTGGTCAAGGG+GGG | + | chr1_4:72346939-72346958 | Msa0183410:CDS | 55.0% | |
| !! | AGGGGGGTGTTGTGCTTTAG+AGG | + | chr1_4:72346955-72346974 | Msa0183410:CDS | 55.0% |
| !! | AGGGTATTGTCGTGTCGGGG+TGG | + | chr1_4:72341929-72341948 | Msa0183410:intron | 60.0% |
| TTGTCGTGTCGGGGTGGCTT+TGG | + | chr1_4:72341935-72341954 | Msa0183410:intron | 60.0% | |
| !! | GTTCGCGGTGCGGTTTGGTT+CGG | - | chr1_4:72344836-72344855 | None:intergenic | 60.0% |
| CACCCCCCTTGACCAAGATC+AGG | - | chr1_4:72346944-72346963 | None:intergenic | 60.0% | |
| TATGGGGCCCGTGCCAAGCA+CGG | + | chr1_4:72340254-72340273 | Msa0183410:intron | 65.0% | |
| ATGGGGCCCGTGCCAAGCAC+GGG | + | chr1_4:72340255-72340274 | Msa0183410:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72339231 | 72347385 | 72339231 | ID=Msa0183410;Name=Msa0183410 |
| chr1_4 | mRNA | 72339231 | 72347385 | 72339231 | ID=Msa0183410-mRNA-1;Parent=Msa0183410;Name=Msa0183410-mRNA-1;_AED=0.03;_eAED=0.03;_QI=60|0.5|0.42|1|1|1|7|136|475 |
| chr1_4 | exon | 72339231 | 72339370 | 72339231 | ID=Msa0183410-mRNA-1:exon:24389;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72339605 | 72339751 | 72339605 | ID=Msa0183410-mRNA-1:exon:24390;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72344029 | 72344100 | 72344029 | ID=Msa0183410-mRNA-1:exon:24391;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72344890 | 72345036 | 72344890 | ID=Msa0183410-mRNA-1:exon:24392;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72345926 | 72345997 | 72345926 | ID=Msa0183410-mRNA-1:exon:24393;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72346099 | 72346484 | 72346099 | ID=Msa0183410-mRNA-1:exon:24394;Parent=Msa0183410-mRNA-1 |
| chr1_4 | exon | 72346726 | 72347385 | 72346726 | ID=Msa0183410-mRNA-1:exon:24395;Parent=Msa0183410-mRNA-1 |
| chr1_4 | five_prime_UTR | 72339231 | 72339290 | 72339231 | ID=Msa0183410-mRNA-1:five_prime_utr;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72339291 | 72339370 | 72339291 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72339605 | 72339751 | 72339605 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72344029 | 72344100 | 72344029 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72344890 | 72345036 | 72344890 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72345926 | 72345997 | 72345926 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72346099 | 72346484 | 72346099 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | CDS | 72346726 | 72347249 | 72346726 | ID=Msa0183410-mRNA-1:cds;Parent=Msa0183410-mRNA-1 |
| chr1_4 | three_prime_UTR | 72347250 | 72347385 | 72347250 | ID=Msa0183410-mRNA-1:three_prime_utr;Parent=Msa0183410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
