AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1051470

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1051470 MtrunA17_Chr7g0220791 98.077 52 1 0 1 52 1 52 9.31e-32 103
Msa1051470 MtrunA17_Chr7g0220801 98.077 52 1 0 1 52 1 52 9.31e-32 103
Msa1051470 MtrunA17_Chr7g0220831 98.077 52 1 0 1 52 1 52 1.38e-31 103
Msa1051470 MtrunA17_Chr4g0020171 98.077 52 1 0 1 52 1 52 1.38e-31 103
Msa1051470 MtrunA17_Chr8g0368651 76.923 52 11 1 1 52 1 51 6.26e-17 66.2
Msa1051470 MtrunA17_Chr4g0021531 75.000 36 9 0 17 52 19 54 3.56e-16 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 95 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATTATGTTTACTGTTATC+AGG 0.213232 7_2:-18697953 Msa1051470:three_prime_UTR
AAGTCACATATGTCAGATTT+TGG 0.231849 7_2:+18698408 None:intergenic
CGCGGAAGCTTCATCTTTCC+TGG 0.256495 7_2:-18698720 Msa1051470:three_prime_UTR
AATCTCGTCAATTTGGTCTT+TGG 0.259345 7_2:+18698947 None:intergenic
AAATTTCCTTTGGAGGTTAA+AGG 0.271383 7_2:-18698159 Msa1051470:three_prime_UTR
GCTGTTCTTGACAGCTATTT+TGG 0.280170 7_2:-18698657 Msa1051470:three_prime_UTR
TTCTCTGACCCTGCTGGATT+AGG 0.287048 7_2:-18698984 Msa1051470:three_prime_UTR
TGACTCGCTTAAATTTATTC+AGG 0.295150 7_2:+18697923 None:intergenic
ATTTATTTAGAAATATAATA+AGG 0.310133 7_2:+18697850 None:intergenic
GTTTCAGAATCTCGTCAATT+TGG 0.331728 7_2:+18698940 None:intergenic
GGTTTGATGACTAAGAATTC+TGG 0.333324 7_2:-18698447 Msa1051470:three_prime_UTR
GCATAACTGAATCCATCTTC+AGG 0.337519 7_2:+18698315 None:intergenic
TGAGAACGAGGAGGAAGTTA+AGG 0.347960 7_2:-18698010 Msa1051470:three_prime_UTR
GAGGAGGGAGGACAAGAAAA+AGG 0.353170 7_2:+18699156 None:intergenic
ATGCTGATAAGTCACAAATT+TGG 0.357352 7_2:-18698596 Msa1051470:three_prime_UTR
AAAACTTGACAAATTTCCTT+TGG 0.369192 7_2:-18698169 Msa1051470:three_prime_UTR
GAGAGGAGCTTCGTACAAAA+AGG 0.388362 7_2:+18699450 None:intergenic
ACTTCGAATTTGAACCTTGC+GGG 0.390896 7_2:-18698389 Msa1051470:three_prime_UTR
GCTTCACCGGAAGCTGTCTA+TGG 0.396357 7_2:-18698543 Msa1051470:three_prime_UTR
TCAAGGCCATAGACAGCTTC+CGG 0.398954 7_2:+18698537 None:intergenic
TCGGCAAGCTTAAGAATTGC+AGG 0.407592 7_2:+18698780 None:intergenic
AAAATCTCAGGATGGTTTGC+GGG 0.408047 7_2:+18699240 None:intergenic
GGTCTACTCTGAAATGTTGC+TGG 0.418240 7_2:-18698041 Msa1051470:three_prime_UTR
CGTACCTTTGTTCGAAATGA+TGG 0.419044 7_2:-18698078 Msa1051470:three_prime_UTR
AAATCTCTGAATGAACTTGT+TGG 0.430429 7_2:-18698258 Msa1051470:three_prime_UTR
AACCAGTCATGCACATTTCA+AGG 0.440811 7_2:+18698520 None:intergenic
ACTTGACAAATTTCCTTTGG+AGG 0.442578 7_2:-18698166 Msa1051470:three_prime_UTR
TGACTAAGAATTCTGGAATC+AGG 0.442912 7_2:-18698440 Msa1051470:three_prime_UTR
TTCAGGGGTGACGTGGATAG+TGG 0.450732 7_2:+18698332 None:intergenic
TGAGGGAAGGATTGAGCTCC+AGG 0.451159 7_2:+18698702 None:intergenic
TTAAGGAGATATAACTACTT+TGG 0.453253 7_2:-18697993 Msa1051470:three_prime_UTR
GATTATGTTTACTGTTATCA+GGG 0.461194 7_2:-18697952 Msa1051470:three_prime_UTR
GGCCTTGAAATGTGCATGAC+TGG 0.467615 7_2:-18698522 Msa1051470:three_prime_UTR
TCAACAATGGTGCATTCAGC+TGG 0.471465 7_2:+18698918 None:intergenic
GTGAAGTGTGAATGAACTAA+TGG 0.476790 7_2:-18699515 Msa1051470:exon
TTTGGTCTTTGGACAATGCT+CGG 0.490726 7_2:+18698958 None:intergenic
CTCTGAATGAACTTGTTGGA+AGG 0.494644 7_2:-18698254 Msa1051470:three_prime_UTR
TCTGAATGAACTTGTTGGAA+GGG 0.497768 7_2:-18698253 Msa1051470:three_prime_UTR
ATCCACGTCACCCCTGAAGA+TGG 0.499429 7_2:-18698327 Msa1051470:three_prime_UTR
CATAACTGAATCCATCTTCA+GGG 0.502683 7_2:+18698316 None:intergenic
AAGACAGAAGAATCTTCAGC+AGG 0.512817 7_2:-18698468 Msa1051470:three_prime_UTR
TCTTAACATTGCTGTGAAAT+CGG 0.512952 7_2:-18698754 Msa1051470:three_prime_UTR
AAGCAATTTCGTAGTCCCGC+AGG 0.513037 7_2:+18698812 None:intergenic
GCTCGGAGGCCTAATCCAGC+AGG 0.517190 7_2:+18698975 None:intergenic
TCATGGTCATCTTGACTCAA+AGG 0.518087 7_2:+18699075 None:intergenic
CACAGCAATGTTAAGACCAT+CGG 0.522381 7_2:+18698761 None:intergenic
AAGGATACAACTGTGGAGAA+AGG 0.528377 7_2:-18698140 Msa1051470:three_prime_UTR
GACTGGTTTAGATAAAGAAA+AGG 0.528480 7_2:-18698505 Msa1051470:three_prime_UTR
CATCACCCATCATGTAAGCT+TGG 0.530202 7_2:+18698616 None:intergenic
TTGTATCCTTTAACCTCCAA+AGG 0.534196 7_2:+18698153 None:intergenic
ATTCAATCATCAAACGATGA+TGG 0.535335 7_2:-18697800 Msa1051470:three_prime_UTR
GTCAAGAACAGCAACTTCCT+CGG 0.536338 7_2:+18698668 None:intergenic
AATGAAGTACTTGGTGAAGA+TGG 0.547238 7_2:-18698114 Msa1051470:three_prime_UTR
AACTTATCATCAAAACCTGC+GGG 0.549743 7_2:-18698827 Msa1051470:three_prime_UTR
GAAAGGATCAATGAAGTACT+TGG 0.555327 7_2:-18698123 Msa1051470:three_prime_UTR
TGCTAAGCTAGACGCTTCAC+CGG 0.556532 7_2:-18698556 Msa1051470:three_prime_UTR
ATTGAAGACGTTCGACCCAA+CGG 0.561423 7_2:-18699418 Msa1051470:CDS
TTATGCAAGCTTTGAAGCAG+TGG 0.572426 7_2:-18698298 Msa1051470:three_prime_UTR
CGGTAGCCAAGCTTACATGA+TGG 0.573036 7_2:-18698622 Msa1051470:three_prime_UTR
TATGCAAGCTTTGAAGCAGT+GGG 0.574688 7_2:-18698297 Msa1051470:three_prime_UTR
ATCCATCTTCAGGGGTGACG+TGG 0.577108 7_2:+18698325 None:intergenic
CAACATTTCAGAGTAGACCT+TGG 0.577948 7_2:+18698045 None:intergenic
CATCATGTAAGCTTGGCTAC+CGG 0.578005 7_2:+18698623 None:intergenic
TGAATAAGCTTGACTCGGAT+AGG 0.578524 7_2:+18698862 None:intergenic
GCATTGCACATTGATACAAA+TGG 0.591805 7_2:-18698195 Msa1051470:three_prime_UTR
GCAATTCTTAAGCTTGCCGA+TGG 0.593187 7_2:-18698777 Msa1051470:three_prime_UTR
GGTAGCCAAGCTTACATGAT+GGG 0.595267 7_2:-18698621 Msa1051470:three_prime_UTR
ACCATGACAAACTCAGCTAT+CGG 0.606560 7_2:-18699059 Msa1051470:three_prime_UTR
AATGCAACAGAAAACTCAGC+TGG 0.608895 7_2:+18698213 None:intergenic
ATGATGGCTGCACATCTCCA+AGG 0.613417 7_2:-18698062 Msa1051470:three_prime_UTR
AATGAACTAATGGAGTCTAA+AGG 0.613513 7_2:-18699505 Msa1051470:exon
ACCGATAGCTGAGTTTGTCA+TGG 0.615180 7_2:+18699058 None:intergenic
TCCTCGGAAAAGCTTCGATG+AGG 0.618294 7_2:+18698684 None:intergenic
CCGTTCATTGAGTACCCGCA+AGG 0.620321 7_2:+18698375 None:intergenic
CCTCGGAAAAGCTTCGATGA+GGG 0.624053 7_2:+18698685 None:intergenic
GGAAAAGCTTCGATGAGGGA+AGG 0.627007 7_2:+18698689 None:intergenic
CCTTGCGGGTACTCAATGAA+CGG 0.636080 7_2:-18698375 Msa1051470:three_prime_UTR
ATTAGATAGTGAGTCAACAA+TGG 0.640442 7_2:+18698905 None:intergenic
GAACTAATGGAGTCTAAAGG+TGG 0.640546 7_2:-18699502 Msa1051470:exon
GACTTCGAATTTGAACCTTG+CGG 0.643472 7_2:-18698390 Msa1051470:three_prime_UTR
CGGCAAGCTTAAGAATTGCA+GGG 0.643796 7_2:+18698781 None:intergenic
AAACTTATCATCAAAACCTG+CGG 0.648431 7_2:-18698828 Msa1051470:three_prime_UTR
CTGGAGTGAGGATGAGAACG+AGG 0.648538 7_2:-18698022 Msa1051470:three_prime_UTR
TCTGAAATGTTGCTGGAGTG+AGG 0.649297 7_2:-18698034 Msa1051470:three_prime_UTR
GCAGCCATCATTTCGAACAA+AGG 0.652571 7_2:+18698074 None:intergenic
CATCATTTCGAACAAAGGTA+CGG 0.654774 7_2:+18698079 None:intergenic
ATAGATGAATAAGCTTGACT+CGG 0.663143 7_2:+18698857 None:intergenic
GGTCTTTGGACAATGCTCGG+AGG 0.663736 7_2:+18698961 None:intergenic
CTCGGAGGCCTAATCCAGCA+GGG 0.668437 7_2:+18698976 None:intergenic
GAGGTTAAAGGATACAACTG+TGG 0.681618 7_2:-18698147 Msa1051470:three_prime_UTR
ATAACTGAATCCATCTTCAG+GGG 0.689618 7_2:+18698317 None:intergenic
GAGTGAGGATGAGAACGAGG+AGG 0.703166 7_2:-18698019 Msa1051470:three_prime_UTR
GAAGACGTTCGACCCAACGG+TGG 0.734466 7_2:-18699415 Msa1051470:CDS
AAATCGGTGAGATACACTCG+CGG 0.764779 7_2:-18698738 Msa1051470:three_prime_UTR
TCTTCAATGATGTAACCGAG+AGG 0.771142 7_2:+18699433 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATGTTAAAATTAATCAA+AGG + chr7_2:18697898-18697917 None:intergenic 10.0%
!! ATAATGTTAAAATTAATCAA+AGG + chr7_2:18697898-18697917 None:intergenic 10.0%
!! TATAGTATATAGTATAAGAT+TGG - chr7_2:18697915-18697934 Msa1051470:three_prime_UTR 15.0%
!! TATAGTATATAGTATAAGAT+TGG - chr7_2:18697915-18697934 Msa1051470:three_prime_UTR 15.0%
!! AAAGGAATTGAAATTGAAAT+GGG + chr7_2:18697880-18697899 None:intergenic 20.0%
!! ACTGCATAATAAAGAAAAAA+GGG + chr7_2:18697965-18697984 None:intergenic 20.0%
!! AAAGGAATTGAAATTGAAAT+GGG + chr7_2:18697880-18697899 None:intergenic 20.0%
!! ACTGCATAATAAAGAAAAAA+GGG + chr7_2:18697965-18697984 None:intergenic 20.0%
! CAAAGGAATTGAAATTGAAA+TGG + chr7_2:18697881-18697900 None:intergenic 25.0%
!! TAGTATAAGATTGGTTGATT+TGG - chr7_2:18697924-18697943 Msa1051470:three_prime_UTR 25.0%
! CACTGCATAATAAAGAAAAA+AGG + chr7_2:18697966-18697985 None:intergenic 25.0%
!!! TTTTGTTGTTTGTAGAGAAA+GGG + chr7_2:18698123-18698142 None:intergenic 25.0%
!!! TTTTTGTTGTTTGTAGAGAA+AGG + chr7_2:18698124-18698143 None:intergenic 25.0%
!!! GAGATAACTTTTTTCGAAAA+TGG - chr7_2:18698217-18698236 Msa1051470:three_prime_UTR 25.0%
! AAAACTTGACAAATTTCCTT+TGG - chr7_2:18699059-18699078 Msa1051470:three_prime_UTR 25.0%
! TTAAGGAGATATAACTACTT+TGG - chr7_2:18699235-18699254 Msa1051470:exon 25.0%
! TGATTATGTTTACTGTTATC+AGG - chr7_2:18699275-18699294 Msa1051470:intron 25.0%
! GATTATGTTTACTGTTATCA+GGG - chr7_2:18699276-18699295 Msa1051470:intron 25.0%
!!! CTTTTATTTTTGCAACAATG+GGG + chr7_2:18699454-18699473 None:intergenic 25.0%
!!! CCTTTTATTTTTGCAACAAT+GGG + chr7_2:18699455-18699474 None:intergenic 25.0%
!!! TCCTTTTATTTTTGCAACAA+TGG + chr7_2:18699456-18699475 None:intergenic 25.0%
! CAAAGGAATTGAAATTGAAA+TGG + chr7_2:18697881-18697900 None:intergenic 25.0%
!! TAGTATAAGATTGGTTGATT+TGG - chr7_2:18697924-18697943 Msa1051470:three_prime_UTR 25.0%
! CACTGCATAATAAAGAAAAA+AGG + chr7_2:18697966-18697985 None:intergenic 25.0%
!!! TTTTGTTGTTTGTAGAGAAA+GGG + chr7_2:18698123-18698142 None:intergenic 25.0%
!!! TTTTTGTTGTTTGTAGAGAA+AGG + chr7_2:18698124-18698143 None:intergenic 25.0%
!!! GAGATAACTTTTTTCGAAAA+TGG - chr7_2:18698217-18698236 Msa1051470:three_prime_UTR 25.0%
! AAAACTTGACAAATTTCCTT+TGG - chr7_2:18699059-18699078 Msa1051470:three_prime_UTR 25.0%
! TTAAGGAGATATAACTACTT+TGG - chr7_2:18699235-18699254 Msa1051470:exon 25.0%
! TGATTATGTTTACTGTTATC+AGG - chr7_2:18699275-18699294 Msa1051470:intron 25.0%
! GATTATGTTTACTGTTATCA+GGG - chr7_2:18699276-18699295 Msa1051470:intron 25.0%
!!! CTTTTATTTTTGCAACAATG+GGG + chr7_2:18699454-18699473 None:intergenic 25.0%
!!! CCTTTTATTTTTGCAACAAT+GGG + chr7_2:18699455-18699474 None:intergenic 25.0%
!!! TCCTTTTATTTTTGCAACAA+TGG + chr7_2:18699456-18699475 None:intergenic 25.0%
AATGAACTAATGGAGTCTAA+AGG - chr7_2:18697723-18697742 Msa1051470:three_prime_UTR 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG - chr7_2:18697993-18698012 Msa1051470:three_prime_UTR 30.0%
!!! TGGGTTCTGATTTAGTTTTT+AGG - chr7_2:18698012-18698031 Msa1051470:three_prime_UTR 30.0%
TGTTGAAGAAAAAAGCAAAG+AGG + chr7_2:18698094-18698113 None:intergenic 30.0%
ATTAGATAGTGAGTCAACAA+TGG + chr7_2:18698326-18698345 None:intergenic 30.0%
ATAGATGAATAAGCTTGACT+CGG + chr7_2:18698374-18698393 None:intergenic 30.0%
AAACTTATCATCAAAACCTG+CGG - chr7_2:18698400-18698419 Msa1051470:three_prime_UTR 30.0%
TCTTAACATTGCTGTGAAAT+CGG - chr7_2:18698474-18698493 Msa1051470:three_prime_UTR 30.0%
ATGCTGATAAGTCACAAATT+TGG - chr7_2:18698632-18698651 Msa1051470:three_prime_UTR 30.0%
!! GACTGGTTTAGATAAAGAAA+AGG - chr7_2:18698723-18698742 Msa1051470:three_prime_UTR 30.0%
! AAGTCACATATGTCAGATTT+TGG + chr7_2:18698823-18698842 None:intergenic 30.0%
AAATCTCTGAATGAACTTGT+TGG - chr7_2:18698970-18698989 Msa1051470:three_prime_UTR 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG - chr7_2:18699069-18699088 Msa1051470:three_prime_UTR 30.0%
TGACTCGCTTAAATTTATTC+AGG + chr7_2:18699308-18699327 None:intergenic 30.0%
ATTCAATCATCAAACGATGA+TGG - chr7_2:18699428-18699447 Msa1051470:CDS 30.0%
CCCATTGTTGCAAAAATAAA+AGG - chr7_2:18699452-18699471 Msa1051470:CDS 30.0%
AATGAACTAATGGAGTCTAA+AGG - chr7_2:18697723-18697742 Msa1051470:three_prime_UTR 30.0%
!!! AAACCATCCTGAGATTTTTT+GGG - chr7_2:18697993-18698012 Msa1051470:three_prime_UTR 30.0%
!!! TGGGTTCTGATTTAGTTTTT+AGG - chr7_2:18698012-18698031 Msa1051470:three_prime_UTR 30.0%
TGTTGAAGAAAAAAGCAAAG+AGG + chr7_2:18698094-18698113 None:intergenic 30.0%
ATTAGATAGTGAGTCAACAA+TGG + chr7_2:18698326-18698345 None:intergenic 30.0%
ATAGATGAATAAGCTTGACT+CGG + chr7_2:18698374-18698393 None:intergenic 30.0%
AAACTTATCATCAAAACCTG+CGG - chr7_2:18698400-18698419 Msa1051470:three_prime_UTR 30.0%
TCTTAACATTGCTGTGAAAT+CGG - chr7_2:18698474-18698493 Msa1051470:three_prime_UTR 30.0%
ATGCTGATAAGTCACAAATT+TGG - chr7_2:18698632-18698651 Msa1051470:three_prime_UTR 30.0%
!! GACTGGTTTAGATAAAGAAA+AGG - chr7_2:18698723-18698742 Msa1051470:three_prime_UTR 30.0%
! AAGTCACATATGTCAGATTT+TGG + chr7_2:18698823-18698842 None:intergenic 30.0%
AAATCTCTGAATGAACTTGT+TGG - chr7_2:18698970-18698989 Msa1051470:three_prime_UTR 30.0%
! AAATTTCCTTTGGAGGTTAA+AGG - chr7_2:18699069-18699088 Msa1051470:three_prime_UTR 30.0%
TGACTCGCTTAAATTTATTC+AGG + chr7_2:18699308-18699327 None:intergenic 30.0%
ATTCAATCATCAAACGATGA+TGG - chr7_2:18699428-18699447 Msa1051470:CDS 30.0%
CCCATTGTTGCAAAAATAAA+AGG - chr7_2:18699452-18699471 Msa1051470:CDS 30.0%
AAAAATCTCAGGATGGTTTG+CGG + chr7_2:18697992-18698011 None:intergenic 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG - chr7_2:18697992-18698011 Msa1051470:three_prime_UTR 35.0%
ATCAGAACCCAAAAAATCTC+AGG + chr7_2:18698003-18698022 None:intergenic 35.0%
GAAGAAAAAAGCAAAGAGGA+GGG + chr7_2:18698090-18698109 None:intergenic 35.0%
TGAAGAAAAAAGCAAAGAGG+AGG + chr7_2:18698091-18698110 None:intergenic 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG - chr7_2:18698191-18698210 Msa1051470:three_prime_UTR 35.0%
! AATCTCGTCAATTTGGTCTT+TGG + chr7_2:18698284-18698303 None:intergenic 35.0%
GTTTCAGAATCTCGTCAATT+TGG + chr7_2:18698291-18698310 None:intergenic 35.0%
AACTTATCATCAAAACCTGC+GGG - chr7_2:18698401-18698420 Msa1051470:three_prime_UTR 35.0%
!!! TATTTTGGCAAACTAGGTTC+CGG - chr7_2:18698586-18698605 Msa1051470:three_prime_UTR 35.0%
! GGTTTGATGACTAAGAATTC+TGG - chr7_2:18698781-18698800 Msa1051470:three_prime_UTR 35.0%
!! TGACTAAGAATTCTGGAATC+AGG - chr7_2:18698788-18698807 Msa1051470:three_prime_UTR 35.0%
! CACATATGTCAGATTTTGGA+AGG + chr7_2:18698819-18698838 None:intergenic 35.0%
ATAACTGAATCCATCTTCAG+GGG + chr7_2:18698914-18698933 None:intergenic 35.0%
CATAACTGAATCCATCTTCA+GGG + chr7_2:18698915-18698934 None:intergenic 35.0%
!! TCTGAATGAACTTGTTGGAA+GGG - chr7_2:18698975-18698994 Msa1051470:three_prime_UTR 35.0%
GCATTGCACATTGATACAAA+TGG - chr7_2:18699033-18699052 Msa1051470:three_prime_UTR 35.0%
ACTTGACAAATTTCCTTTGG+AGG - chr7_2:18699062-18699081 Msa1051470:three_prime_UTR 35.0%
TTGTATCCTTTAACCTCCAA+AGG + chr7_2:18699078-18699097 None:intergenic 35.0%
! GAAAGGATCAATGAAGTACT+TGG - chr7_2:18699105-18699124 Msa1051470:three_prime_UTR 35.0%
! AATGAAGTACTTGGTGAAGA+TGG - chr7_2:18699114-18699133 Msa1051470:three_prime_UTR 35.0%
CATCATTTCGAACAAAGGTA+CGG + chr7_2:18699152-18699171 None:intergenic 35.0%
AAAAATCTCAGGATGGTTTG+CGG + chr7_2:18697992-18698011 None:intergenic 35.0%
!!! CAAACCATCCTGAGATTTTT+TGG - chr7_2:18697992-18698011 Msa1051470:three_prime_UTR 35.0%
ATCAGAACCCAAAAAATCTC+AGG + chr7_2:18698003-18698022 None:intergenic 35.0%
GAAGAAAAAAGCAAAGAGGA+GGG + chr7_2:18698090-18698109 None:intergenic 35.0%
TGAAGAAAAAAGCAAAGAGG+AGG + chr7_2:18698091-18698110 None:intergenic 35.0%
!!! GTTTTGAAGGCTATGAAAAG+AGG - chr7_2:18698191-18698210 Msa1051470:three_prime_UTR 35.0%
! AATCTCGTCAATTTGGTCTT+TGG + chr7_2:18698284-18698303 None:intergenic 35.0%
GTTTCAGAATCTCGTCAATT+TGG + chr7_2:18698291-18698310 None:intergenic 35.0%
AACTTATCATCAAAACCTGC+GGG - chr7_2:18698401-18698420 Msa1051470:three_prime_UTR 35.0%
!!! TATTTTGGCAAACTAGGTTC+CGG - chr7_2:18698586-18698605 Msa1051470:three_prime_UTR 35.0%
! GGTTTGATGACTAAGAATTC+TGG - chr7_2:18698781-18698800 Msa1051470:three_prime_UTR 35.0%
!! TGACTAAGAATTCTGGAATC+AGG - chr7_2:18698788-18698807 Msa1051470:three_prime_UTR 35.0%
! CACATATGTCAGATTTTGGA+AGG + chr7_2:18698819-18698838 None:intergenic 35.0%
ATAACTGAATCCATCTTCAG+GGG + chr7_2:18698914-18698933 None:intergenic 35.0%
CATAACTGAATCCATCTTCA+GGG + chr7_2:18698915-18698934 None:intergenic 35.0%
!! TCTGAATGAACTTGTTGGAA+GGG - chr7_2:18698975-18698994 Msa1051470:three_prime_UTR 35.0%
GCATTGCACATTGATACAAA+TGG - chr7_2:18699033-18699052 Msa1051470:three_prime_UTR 35.0%
ACTTGACAAATTTCCTTTGG+AGG - chr7_2:18699062-18699081 Msa1051470:three_prime_UTR 35.0%
TTGTATCCTTTAACCTCCAA+AGG + chr7_2:18699078-18699097 None:intergenic 35.0%
! GAAAGGATCAATGAAGTACT+TGG - chr7_2:18699105-18699124 Msa1051470:three_prime_UTR 35.0%
! AATGAAGTACTTGGTGAAGA+TGG - chr7_2:18699114-18699133 Msa1051470:three_prime_UTR 35.0%
CATCATTTCGAACAAAGGTA+CGG + chr7_2:18699152-18699171 None:intergenic 35.0%
GAACTAATGGAGTCTAAAGG+TGG - chr7_2:18697726-18697745 Msa1051470:three_prime_UTR 40.0%
! TTTTTGTACGAAGCTCCTCT+CGG - chr7_2:18697780-18697799 Msa1051470:three_prime_UTR 40.0%
TCTTCAATGATGTAACCGAG+AGG + chr7_2:18697798-18697817 None:intergenic 40.0%
! AATTTTTCTACGCCACCGTT+GGG + chr7_2:18697828-18697847 None:intergenic 40.0%
! AAAATCTCAGGATGGTTTGC+GGG + chr7_2:18697991-18698010 None:intergenic 40.0%
GAACCCAAAAAATCTCAGGA+TGG + chr7_2:18697999-18698018 None:intergenic 40.0%
TCATGGTCATCTTGACTCAA+AGG + chr7_2:18698156-18698175 None:intergenic 40.0%
ACCATGACAAACTCAGCTAT+CGG - chr7_2:18698169-18698188 Msa1051470:three_prime_UTR 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG - chr7_2:18698178-18698197 Msa1051470:three_prime_UTR 40.0%
! TTTGGTCTTTGGACAATGCT+CGG + chr7_2:18698273-18698292 None:intergenic 40.0%
!! TGAATAAGCTTGACTCGGAT+AGG + chr7_2:18698369-18698388 None:intergenic 40.0%
CACAGCAATGTTAAGACCAT+CGG + chr7_2:18698470-18698489 None:intergenic 40.0%
! GCTGTTCTTGACAGCTATTT+TGG - chr7_2:18698571-18698590 Msa1051470:three_prime_UTR 40.0%
!!! GACAGCTATTTTGGCAAACT+AGG - chr7_2:18698580-18698599 Msa1051470:three_prime_UTR 40.0%
AACCAGTCATGCACATTTCA+AGG + chr7_2:18698711-18698730 None:intergenic 40.0%
AAGACAGAAGAATCTTCAGC+AGG - chr7_2:18698760-18698779 Msa1051470:three_prime_UTR 40.0%
GACTTCGAATTTGAACCTTG+CGG - chr7_2:18698838-18698857 Msa1051470:three_prime_UTR 40.0%
ACTTCGAATTTGAACCTTGC+GGG - chr7_2:18698839-18698858 Msa1051470:three_prime_UTR 40.0%
GCATAACTGAATCCATCTTC+AGG + chr7_2:18698916-18698935 None:intergenic 40.0%
!! TTATGCAAGCTTTGAAGCAG+TGG - chr7_2:18698930-18698949 Msa1051470:three_prime_UTR 40.0%
!! TATGCAAGCTTTGAAGCAGT+GGG - chr7_2:18698931-18698950 Msa1051470:three_prime_UTR 40.0%
!! CTCTGAATGAACTTGTTGGA+AGG - chr7_2:18698974-18698993 Msa1051470:three_prime_UTR 40.0%
AATGCAACAGAAAACTCAGC+TGG + chr7_2:18699018-18699037 None:intergenic 40.0%
GAGGTTAAAGGATACAACTG+TGG - chr7_2:18699081-18699100 Msa1051470:three_prime_UTR 40.0%
AAGGATACAACTGTGGAGAA+AGG - chr7_2:18699088-18699107 Msa1051470:three_prime_UTR 40.0%
CGTACCTTTGTTCGAAATGA+TGG - chr7_2:18699150-18699169 Msa1051470:three_prime_UTR 40.0%
CAACATTTCAGAGTAGACCT+TGG + chr7_2:18699186-18699205 None:intergenic 40.0%
GAACTAATGGAGTCTAAAGG+TGG - chr7_2:18697726-18697745 Msa1051470:three_prime_UTR 40.0%
! TTTTTGTACGAAGCTCCTCT+CGG - chr7_2:18697780-18697799 Msa1051470:three_prime_UTR 40.0%
TCTTCAATGATGTAACCGAG+AGG + chr7_2:18697798-18697817 None:intergenic 40.0%
! AATTTTTCTACGCCACCGTT+GGG + chr7_2:18697828-18697847 None:intergenic 40.0%
! AAAATCTCAGGATGGTTTGC+GGG + chr7_2:18697991-18698010 None:intergenic 40.0%
GAACCCAAAAAATCTCAGGA+TGG + chr7_2:18697999-18698018 None:intergenic 40.0%
TCATGGTCATCTTGACTCAA+AGG + chr7_2:18698156-18698175 None:intergenic 40.0%
ACCATGACAAACTCAGCTAT+CGG - chr7_2:18698169-18698188 Msa1051470:three_prime_UTR 40.0%
!!! AACTCAGCTATCGGTTTTGA+AGG - chr7_2:18698178-18698197 Msa1051470:three_prime_UTR 40.0%
! TTTGGTCTTTGGACAATGCT+CGG + chr7_2:18698273-18698292 None:intergenic 40.0%
!! TGAATAAGCTTGACTCGGAT+AGG + chr7_2:18698369-18698388 None:intergenic 40.0%
CACAGCAATGTTAAGACCAT+CGG + chr7_2:18698470-18698489 None:intergenic 40.0%
! GCTGTTCTTGACAGCTATTT+TGG - chr7_2:18698571-18698590 Msa1051470:three_prime_UTR 40.0%
!!! GACAGCTATTTTGGCAAACT+AGG - chr7_2:18698580-18698599 Msa1051470:three_prime_UTR 40.0%
AACCAGTCATGCACATTTCA+AGG + chr7_2:18698711-18698730 None:intergenic 40.0%
AAGACAGAAGAATCTTCAGC+AGG - chr7_2:18698760-18698779 Msa1051470:three_prime_UTR 40.0%
GACTTCGAATTTGAACCTTG+CGG - chr7_2:18698838-18698857 Msa1051470:three_prime_UTR 40.0%
ACTTCGAATTTGAACCTTGC+GGG - chr7_2:18698839-18698858 Msa1051470:three_prime_UTR 40.0%
GCATAACTGAATCCATCTTC+AGG + chr7_2:18698916-18698935 None:intergenic 40.0%
!! TTATGCAAGCTTTGAAGCAG+TGG - chr7_2:18698930-18698949 Msa1051470:three_prime_UTR 40.0%
!! TATGCAAGCTTTGAAGCAGT+GGG - chr7_2:18698931-18698950 Msa1051470:three_prime_UTR 40.0%
!! CTCTGAATGAACTTGTTGGA+AGG - chr7_2:18698974-18698993 Msa1051470:three_prime_UTR 40.0%
AATGCAACAGAAAACTCAGC+TGG + chr7_2:18699018-18699037 None:intergenic 40.0%
GAGGTTAAAGGATACAACTG+TGG - chr7_2:18699081-18699100 Msa1051470:three_prime_UTR 40.0%
AAGGATACAACTGTGGAGAA+AGG - chr7_2:18699088-18699107 Msa1051470:three_prime_UTR 40.0%
CGTACCTTTGTTCGAAATGA+TGG - chr7_2:18699150-18699169 Msa1051470:three_prime_UTR 40.0%
CAACATTTCAGAGTAGACCT+TGG + chr7_2:18699186-18699205 None:intergenic 40.0%
AGGAGCTTCGTACAAAAAGG+AGG + chr7_2:18697778-18697797 None:intergenic 45.0%
GAGAGGAGCTTCGTACAAAA+AGG + chr7_2:18697781-18697800 None:intergenic 45.0%
ATTGAAGACGTTCGACCCAA+CGG - chr7_2:18697810-18697829 Msa1051470:three_prime_UTR 45.0%
! GAATTTTTCTACGCCACCGT+TGG + chr7_2:18697829-18697848 None:intergenic 45.0%
AGGACAAGAAAAAGGAGAGG+AGG + chr7_2:18698067-18698086 None:intergenic 45.0%
GAAAAAAGCAAAGAGGAGGG+AGG + chr7_2:18698087-18698106 None:intergenic 45.0%
ACCGATAGCTGAGTTTGTCA+TGG + chr7_2:18698173-18698192 None:intergenic 45.0%
TCAACAATGGTGCATTCAGC+TGG + chr7_2:18698313-18698332 None:intergenic 45.0%
CGGCAAGCTTAAGAATTGCA+GGG + chr7_2:18698450-18698469 None:intergenic 45.0%
TCGGCAAGCTTAAGAATTGC+AGG + chr7_2:18698451-18698470 None:intergenic 45.0%
GCAATTCTTAAGCTTGCCGA+TGG - chr7_2:18698451-18698470 Msa1051470:three_prime_UTR 45.0%
AAATCGGTGAGATACACTCG+CGG - chr7_2:18698490-18698509 Msa1051470:three_prime_UTR 45.0%
GTCAAGAACAGCAACTTCCT+CGG + chr7_2:18698563-18698582 None:intergenic 45.0%
CATCATGTAAGCTTGGCTAC+CGG + chr7_2:18698608-18698627 None:intergenic 45.0%
GGTAGCCAAGCTTACATGAT+GGG - chr7_2:18698607-18698626 Msa1051470:three_prime_UTR 45.0%
CATCACCCATCATGTAAGCT+TGG + chr7_2:18698615-18698634 None:intergenic 45.0%
GCAGCCATCATTTCGAACAA+AGG + chr7_2:18699157-18699176 None:intergenic 45.0%
!! GGTCTACTCTGAAATGTTGC+TGG - chr7_2:18699187-18699206 Msa1051470:three_prime_UTR 45.0%
! TCTGAAATGTTGCTGGAGTG+AGG - chr7_2:18699194-18699213 Msa1051470:three_prime_UTR 45.0%
TGAGAACGAGGAGGAAGTTA+AGG - chr7_2:18699218-18699237 Msa1051470:three_prime_UTR 45.0%
AGGAGCTTCGTACAAAAAGG+AGG + chr7_2:18697778-18697797 None:intergenic 45.0%
GAGAGGAGCTTCGTACAAAA+AGG + chr7_2:18697781-18697800 None:intergenic 45.0%
ATTGAAGACGTTCGACCCAA+CGG - chr7_2:18697810-18697829 Msa1051470:three_prime_UTR 45.0%
! GAATTTTTCTACGCCACCGT+TGG + chr7_2:18697829-18697848 None:intergenic 45.0%
AGGACAAGAAAAAGGAGAGG+AGG + chr7_2:18698067-18698086 None:intergenic 45.0%
GAAAAAAGCAAAGAGGAGGG+AGG + chr7_2:18698087-18698106 None:intergenic 45.0%
ACCGATAGCTGAGTTTGTCA+TGG + chr7_2:18698173-18698192 None:intergenic 45.0%
TCAACAATGGTGCATTCAGC+TGG + chr7_2:18698313-18698332 None:intergenic 45.0%
CGGCAAGCTTAAGAATTGCA+GGG + chr7_2:18698450-18698469 None:intergenic 45.0%
TCGGCAAGCTTAAGAATTGC+AGG + chr7_2:18698451-18698470 None:intergenic 45.0%
GCAATTCTTAAGCTTGCCGA+TGG - chr7_2:18698451-18698470 Msa1051470:three_prime_UTR 45.0%
AAATCGGTGAGATACACTCG+CGG - chr7_2:18698490-18698509 Msa1051470:three_prime_UTR 45.0%
GTCAAGAACAGCAACTTCCT+CGG + chr7_2:18698563-18698582 None:intergenic 45.0%
CATCATGTAAGCTTGGCTAC+CGG + chr7_2:18698608-18698627 None:intergenic 45.0%
GGTAGCCAAGCTTACATGAT+GGG - chr7_2:18698607-18698626 Msa1051470:three_prime_UTR 45.0%
CATCACCCATCATGTAAGCT+TGG + chr7_2:18698615-18698634 None:intergenic 45.0%
GCAGCCATCATTTCGAACAA+AGG + chr7_2:18699157-18699176 None:intergenic 45.0%
!! GGTCTACTCTGAAATGTTGC+TGG - chr7_2:18699187-18699206 Msa1051470:three_prime_UTR 45.0%
! TCTGAAATGTTGCTGGAGTG+AGG - chr7_2:18699194-18699213 Msa1051470:three_prime_UTR 45.0%
TGAGAACGAGGAGGAAGTTA+AGG - chr7_2:18699218-18699237 Msa1051470:three_prime_UTR 45.0%
!! ATTTATTTAGAAATATAATA+AGG + chr7_2:18699381-18699400 None:intergenic 5.0%
!! ATTTATTTAGAAATATAATA+AGG + chr7_2:18699381-18699400 None:intergenic 5.0%
GGGAGGACAAGAAAAAGGAG+AGG + chr7_2:18698070-18698089 None:intergenic 50.0%
GAGGAGGGAGGACAAGAAAA+AGG + chr7_2:18698075-18698094 None:intergenic 50.0%
TTCTCTGACCCTGCTGGATT+AGG - chr7_2:18698244-18698263 Msa1051470:three_prime_UTR 50.0%
AAGCAATTTCGTAGTCCCGC+AGG + chr7_2:18698419-18698438 None:intergenic 50.0%
GGAAAAGCTTCGATGAGGGA+AGG + chr7_2:18698542-18698561 None:intergenic 50.0%
CCTCGGAAAAGCTTCGATGA+GGG + chr7_2:18698546-18698565 None:intergenic 50.0%
TCCTCGGAAAAGCTTCGATG+AGG + chr7_2:18698547-18698566 None:intergenic 50.0%
CGGTAGCCAAGCTTACATGA+TGG - chr7_2:18698606-18698625 Msa1051470:three_prime_UTR 50.0%
TGCTAAGCTAGACGCTTCAC+CGG - chr7_2:18698672-18698691 Msa1051470:three_prime_UTR 50.0%
TCAAGGCCATAGACAGCTTC+CGG + chr7_2:18698694-18698713 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG - chr7_2:18698706-18698725 Msa1051470:three_prime_UTR 50.0%
CCTTGCGGGTACTCAATGAA+CGG - chr7_2:18698853-18698872 Msa1051470:three_prime_UTR 50.0%
ATGATGGCTGCACATCTCCA+AGG - chr7_2:18699166-18699185 Msa1051470:three_prime_UTR 50.0%
GGGAGGACAAGAAAAAGGAG+AGG + chr7_2:18698070-18698089 None:intergenic 50.0%
GAGGAGGGAGGACAAGAAAA+AGG + chr7_2:18698075-18698094 None:intergenic 50.0%
TTCTCTGACCCTGCTGGATT+AGG - chr7_2:18698244-18698263 Msa1051470:three_prime_UTR 50.0%
AAGCAATTTCGTAGTCCCGC+AGG + chr7_2:18698419-18698438 None:intergenic 50.0%
GGAAAAGCTTCGATGAGGGA+AGG + chr7_2:18698542-18698561 None:intergenic 50.0%
CCTCGGAAAAGCTTCGATGA+GGG + chr7_2:18698546-18698565 None:intergenic 50.0%
TCCTCGGAAAAGCTTCGATG+AGG + chr7_2:18698547-18698566 None:intergenic 50.0%
CGGTAGCCAAGCTTACATGA+TGG - chr7_2:18698606-18698625 Msa1051470:three_prime_UTR 50.0%
TGCTAAGCTAGACGCTTCAC+CGG - chr7_2:18698672-18698691 Msa1051470:three_prime_UTR 50.0%
TCAAGGCCATAGACAGCTTC+CGG + chr7_2:18698694-18698713 None:intergenic 50.0%
GGCCTTGAAATGTGCATGAC+TGG - chr7_2:18698706-18698725 Msa1051470:three_prime_UTR 50.0%
CCTTGCGGGTACTCAATGAA+CGG - chr7_2:18698853-18698872 Msa1051470:three_prime_UTR 50.0%
ATGATGGCTGCACATCTCCA+AGG - chr7_2:18699166-18699185 Msa1051470:three_prime_UTR 50.0%
! GGTGTTTTCTCTGACCCTGC+TGG - chr7_2:18698238-18698257 Msa1051470:three_prime_UTR 55.0%
GGTCTTTGGACAATGCTCGG+AGG + chr7_2:18698270-18698289 None:intergenic 55.0%
CGCGGAAGCTTCATCTTTCC+TGG - chr7_2:18698508-18698527 Msa1051470:three_prime_UTR 55.0%
TGAGGGAAGGATTGAGCTCC+AGG + chr7_2:18698529-18698548 None:intergenic 55.0%
! CCCTCATCGAAGCTTTTCCG+AGG - chr7_2:18698543-18698562 Msa1051470:three_prime_UTR 55.0%
GCTTCACCGGAAGCTGTCTA+TGG - chr7_2:18698685-18698704 Msa1051470:three_prime_UTR 55.0%
CCGTTCATTGAGTACCCGCA+AGG + chr7_2:18698856-18698875 None:intergenic 55.0%
TTCAGGGGTGACGTGGATAG+TGG + chr7_2:18698899-18698918 None:intergenic 55.0%
ATCCACGTCACCCCTGAAGA+TGG - chr7_2:18698901-18698920 Msa1051470:three_prime_UTR 55.0%
ATCCATCTTCAGGGGTGACG+TGG + chr7_2:18698906-18698925 None:intergenic 55.0%
CTGGAGTGAGGATGAGAACG+AGG - chr7_2:18699206-18699225 Msa1051470:three_prime_UTR 55.0%
GAGTGAGGATGAGAACGAGG+AGG - chr7_2:18699209-18699228 Msa1051470:three_prime_UTR 55.0%
! GGTGTTTTCTCTGACCCTGC+TGG - chr7_2:18698238-18698257 Msa1051470:three_prime_UTR 55.0%
GGTCTTTGGACAATGCTCGG+AGG + chr7_2:18698270-18698289 None:intergenic 55.0%
CGCGGAAGCTTCATCTTTCC+TGG - chr7_2:18698508-18698527 Msa1051470:three_prime_UTR 55.0%
TGAGGGAAGGATTGAGCTCC+AGG + chr7_2:18698529-18698548 None:intergenic 55.0%
! CCCTCATCGAAGCTTTTCCG+AGG - chr7_2:18698543-18698562 Msa1051470:three_prime_UTR 55.0%
GCTTCACCGGAAGCTGTCTA+TGG - chr7_2:18698685-18698704 Msa1051470:three_prime_UTR 55.0%
CCGTTCATTGAGTACCCGCA+AGG + chr7_2:18698856-18698875 None:intergenic 55.0%
TTCAGGGGTGACGTGGATAG+TGG + chr7_2:18698899-18698918 None:intergenic 55.0%
ATCCACGTCACCCCTGAAGA+TGG - chr7_2:18698901-18698920 Msa1051470:three_prime_UTR 55.0%
ATCCATCTTCAGGGGTGACG+TGG + chr7_2:18698906-18698925 None:intergenic 55.0%
CTGGAGTGAGGATGAGAACG+AGG - chr7_2:18699206-18699225 Msa1051470:three_prime_UTR 55.0%
GAGTGAGGATGAGAACGAGG+AGG - chr7_2:18699209-18699228 Msa1051470:three_prime_UTR 55.0%
GAAGACGTTCGACCCAACGG+TGG - chr7_2:18697813-18697832 Msa1051470:three_prime_UTR 60.0%
CTCGGAGGCCTAATCCAGCA+GGG + chr7_2:18698255-18698274 None:intergenic 60.0%
GAAGACGTTCGACCCAACGG+TGG - chr7_2:18697813-18697832 Msa1051470:three_prime_UTR 60.0%
CTCGGAGGCCTAATCCAGCA+GGG + chr7_2:18698255-18698274 None:intergenic 60.0%
GCTCGGAGGCCTAATCCAGC+AGG + chr7_2:18698256-18698275 None:intergenic 65.0%
GCTCGGAGGCCTAATCCAGC+AGG + chr7_2:18698256-18698275 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 18697714 18699536 18697714 ID=Msa1051470;Name=Msa1051470
chr7_2 mRNA 18697714 18699536 18697714 ID=Msa1051470-mRNA-1;Parent=Msa1051470;Name=Msa1051470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18|1|1|1|1|1|2|1532|52
chr7_2 exon 18697714 18699266 18697714 ID=Msa1051470-mRNA-1:exon:4143;Parent=Msa1051470-mRNA-1
chr7_2 exon 18699381 18699536 18699381 ID=Msa1051470-mRNA-1:exon:4142;Parent=Msa1051470-mRNA-1
chr7_2 five_prime_UTR 18699519 18699536 18699519 ID=Msa1051470-mRNA-1:five_prime_utr;Parent=Msa1051470-mRNA-1
chr7_2 CDS 18699381 18699518 18699381 ID=Msa1051470-mRNA-1:cds;Parent=Msa1051470-mRNA-1
chr7_2 CDS 18699246 18699266 18699246 ID=Msa1051470-mRNA-1:cds;Parent=Msa1051470-mRNA-1
chr7_2 three_prime_UTR 18697714 18699245 18697714 ID=Msa1051470-mRNA-1:three_prime_utr;Parent=Msa1051470-mRNA-1
Gene Sequence

>Msa1051470

ATGGAGTCTAAAGGTGGTAAAAAGAAGTCTAGCAGTAGTAATTCCTCCTTTTTGTACGAAGCTCCTCTCGGTTACATCATTGAAGACGTTCGACCCAACGGTGGCGTAGAAAAATTCAAATCTGCTGATTACTCAAACTGCACCCGCAAACCATCCTGA
Protein sequence

>Msa1051470

MESKGGKKKSSSSNSSFLYEAPLGYIIEDVRPNGGVEKFKSADYSNCTRKPS*