AlfalfaGEDB | Msa1051470

M. sativa cultivar zhongmu-4 / Msa1051470

KEGG: -
GO: -
PFAM: PF08132.14

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051470	A0A396H0C5	98.077	52	1	0	1	52	1	52	4.83e-28	103

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044970	Msa1051470	0.820182	7.850231e-53	-8.615850e-47
Msa0301260	Msa1051470	-0.800284	1.549020e-48	-8.615850e-47
Msa0350070	Msa1051470	0.806763	7.024682e-50	-8.615850e-47
Msa0444170	Msa1051470	0.804549	2.048397e-49	-8.615850e-47
Msa0491730	Msa1051470	0.809005	2.343449e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1051470	MtrunA17_Chr7g0220791	98.077	52	1	0	1	52	1	52	9.31e-32	103
Msa1051470	MtrunA17_Chr7g0220801	98.077	52	1	0	1	52	1	52	9.31e-32	103
Msa1051470	MtrunA17_Chr7g0220831	98.077	52	1	0	1	52	1	52	1.38e-31	103
Msa1051470	MtrunA17_Chr4g0020171	98.077	52	1	0	1	52	1	52	1.38e-31	103
Msa1051470	MtrunA17_Chr8g0368651	76.923	52	11	1	1	52	1	51	6.26e-17	66.2
Msa1051470	MtrunA17_Chr4g0021531	75.000	36	9	0	17	52	19	54	3.56e-16	64.3

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 95 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGACAAATTTCCTT+TGG	0.369192	7_2:-18698169	Msa1051470:three_prime_UTR
AAAATCTCAGGATGGTTTGC+GGG	0.408047	7_2:+18699240	None:intergenic
AAACTTATCATCAAAACCTG+CGG	0.648431	7_2:-18698828	Msa1051470:three_prime_UTR
AAATCGGTGAGATACACTCG+CGG	0.764779	7_2:-18698738	Msa1051470:three_prime_UTR
AAATCTCTGAATGAACTTGT+TGG	0.430429	7_2:-18698258	Msa1051470:three_prime_UTR
AAATTTCCTTTGGAGGTTAA+AGG	0.271383	7_2:-18698159	Msa1051470:three_prime_UTR
AACCAGTCATGCACATTTCA+AGG	0.440811	7_2:+18698520	None:intergenic
AACTTATCATCAAAACCTGC+GGG	0.549743	7_2:-18698827	Msa1051470:three_prime_UTR
AAGACAGAAGAATCTTCAGC+AGG	0.512817	7_2:-18698468	Msa1051470:three_prime_UTR
AAGCAATTTCGTAGTCCCGC+AGG	0.513037	7_2:+18698812	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGAACTAATGGAGTCTAA+AGG	-	chr7_2:18697723-18697742	Msa1051470:three_prime_UTR	30.0%
TGTTGAAGAAAAAAGCAAAG+AGG	+	chr7_2:18698094-18698113	None:intergenic	30.0%
ATTAGATAGTGAGTCAACAA+TGG	+	chr7_2:18698326-18698345	None:intergenic	30.0%
ATAGATGAATAAGCTTGACT+CGG	+	chr7_2:18698374-18698393	None:intergenic	30.0%
AAACTTATCATCAAAACCTG+CGG	-	chr7_2:18698400-18698419	Msa1051470:three_prime_UTR	30.0%
TCTTAACATTGCTGTGAAAT+CGG	-	chr7_2:18698474-18698493	Msa1051470:three_prime_UTR	30.0%
ATGCTGATAAGTCACAAATT+TGG	-	chr7_2:18698632-18698651	Msa1051470:three_prime_UTR	30.0%
AAATCTCTGAATGAACTTGT+TGG	-	chr7_2:18698970-18698989	Msa1051470:three_prime_UTR	30.0%
TGACTCGCTTAAATTTATTC+AGG	+	chr7_2:18699308-18699327	None:intergenic	30.0%
ATTCAATCATCAAACGATGA+TGG	-	chr7_2:18699428-18699447	Msa1051470:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	18697714	18699536	18697714	ID=Msa1051470;Name=Msa1051470
chr7_2	mRNA	18697714	18699536	18697714	ID=Msa1051470-mRNA-1;Parent=Msa1051470;Name=Msa1051470-mRNA-1;_AED=0.00;_eAED=0.00;_QI=18\|1\|1\|1\|1\|1\|2\|1532\|52
chr7_2	exon	18697714	18699266	18697714	ID=Msa1051470-mRNA-1:exon:4143;Parent=Msa1051470-mRNA-1
chr7_2	exon	18699381	18699536	18699381	ID=Msa1051470-mRNA-1:exon:4142;Parent=Msa1051470-mRNA-1
chr7_2	five_prime_UTR	18699519	18699536	18699519	ID=Msa1051470-mRNA-1:five_prime_utr;Parent=Msa1051470-mRNA-1
chr7_2	CDS	18699381	18699518	18699381	ID=Msa1051470-mRNA-1:cds;Parent=Msa1051470-mRNA-1
chr7_2	CDS	18699246	18699266	18699246	ID=Msa1051470-mRNA-1:cds;Parent=Msa1051470-mRNA-1
chr7_2	three_prime_UTR	18697714	18699245	18697714	ID=Msa1051470-mRNA-1:three_prime_utr;Parent=Msa1051470-mRNA-1

Gene Sequence	>Msa1051470 ATGGAGTCTAAAGGTGGTAAAAAGAAGTCTAGCAGTAGTAATTCCTCCTTTTTGTACGAAGCTCCTCTCGGTTACATCATTGAAGACGTTCGACCCAACGGTGGCGTAGAAAAATTCAAATCTGCTGATTACTCAAACTGCACCCGCAAACCATCCTGA
Protein sequence	>Msa1051470 MESKGGKKKSSSSNSSFLYEAPLGYIIEDVRPNGGVEKFKSADYSNCTRKPS*