AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044970

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044970 MtrunA17_Chr1g0211561 95.344 945 24 3 1 944 1 926 0.0 1844
Msa0044970 MtrunA17_Chr2g0300341 43.131 626 285 9 313 933 174 733 6.19e-168 508
Msa0044970 MtrunA17_Chr3g0136161 38.026 689 346 12 253 928 144 764 2.68e-153 471
Msa0044970 MtrunA17_Chr3g0136211 38.770 699 341 13 253 935 143 770 5.11e-151 465
Msa0044970 MtrunA17_Chr8g0369461 40.409 636 311 9 301 935 130 698 6.43e-144 444
Msa0044970 MtrunA17_Chr3g0136141 39.275 662 316 16 289 933 143 735 2.21e-141 439
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044970 AT1G78610.1 55.615 935 279 17 49 941 10 850 0.0 922
Msa0044970 AT2G17010.1 52.107 973 356 24 5 940 4 903 0.0 880
Msa0044970 AT1G53470.1 53.622 925 335 22 49 939 11 875 0.0 875
Msa0044970 AT3G14810.1 52.431 946 314 22 49 939 11 875 0.0 872
Msa0044970 AT3G14810.2 49.789 946 304 23 49 939 11 840 0.0 801
Msa0044970 AT2G17000.2 50.561 892 343 18 56 940 36 836 0.0 787
Msa0044970 AT2G17000.1 50.392 893 343 18 56 940 36 836 0.0 786
Msa0044970 AT2G17010.2 46.275 698 265 20 4 655 3 636 1.83e-177 530
Msa0044970 AT5G12080.1 40.458 655 318 10 276 925 143 730 7.52e-162 492
Msa0044970 AT5G12080.2 40.458 655 318 10 276 925 143 730 7.52e-162 492
Msa0044970 AT5G12080.3 40.458 655 318 10 276 925 143 730 7.52e-162 492
Msa0044970 AT5G19520.1 37.700 626 320 8 302 925 181 738 1.34e-142 442
Msa0044970 AT5G19520.2 37.700 626 320 8 302 925 181 738 1.34e-142 442
Msa0044970 AT1G49260.1 28.926 121 81 3 373 491 5 122 3.18e-11 62.8

Find 254 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCTTCAAATAGATTTA+TGG 0.106249 1_1:-76641748 None:intergenic
TTCCAAGCCGACACGTTATT+TGG 0.141191 1_1:-76640931 None:intergenic
CCCATTATCATCAGATTTCT+TGG 0.159517 1_1:-76640857 None:intergenic
CCATTATCATACTGGTTATT+TGG 0.196571 1_1:+76642373 Msa0044970:CDS
AGAAAACACATTTCAGTCTT+TGG 0.216359 1_1:+76640128 Msa0044970:CDS
TTCTCTCCAAATCTTGTTAT+TGG 0.218451 1_1:-76639441 None:intergenic
GGTTATTTGGCTCTTGATAT+TGG 0.220545 1_1:+76642386 Msa0044970:CDS
TTTGAAGGAGCGTCTGATTC+TGG 0.222745 1_1:+76641759 Msa0044970:CDS
GGAAAATCCTCTTCCATAAA+AGG 0.232230 1_1:-76640094 None:intergenic
TGGTTTCTGATTGGGTTATT+AGG 0.232570 1_1:+76640296 Msa0044970:CDS
TAAAACTAAGTCCAGATTAA+TGG 0.259824 1_1:+76639970 Msa0044970:CDS
TCCAAGAAATCTGATGATAA+TGG 0.259886 1_1:+76640856 Msa0044970:CDS
CTCTGTGGCAGCTTAAGTTT+TGG 0.268313 1_1:+76640233 Msa0044970:CDS
AGAATTGAAAGGGTCTTTCT+AGG 0.285153 1_1:-76639054 None:intergenic
GTCTTTGGATTCTTCTTGAA+TGG 0.297980 1_1:+76640143 Msa0044970:CDS
GTCTTGGTTGCATTTATATT+CGG 0.298230 1_1:+76642453 Msa0044970:CDS
TTGTCCAGGTTAATGCCTTC+AGG 0.299126 1_1:+76642268 Msa0044970:intron
TCAATATGTGACCAAGGTTT+TGG 0.301334 1_1:+76640489 Msa0044970:CDS
TATGAAGAGGTTAATGAATA+TGG 0.306929 1_1:+76640954 Msa0044970:CDS
ATAGTTTGCATCACAGGGTT+AGG 0.308441 1_1:-76639239 None:intergenic
GCAAATCCGCGTTGAAGAAC+TGG 0.325429 1_1:+76641788 Msa0044970:CDS
AACACTCTCGGGGCCGCCTT+TGG 0.329276 1_1:+76640642 Msa0044970:CDS
CTTAGTTGCCATTATCATAC+TGG 0.329463 1_1:+76642365 Msa0044970:CDS
AATGACGACGGTCGTGATTA+GGG 0.330012 1_1:-76639835 None:intergenic
CCAAGAAATCTGATGATAAT+GGG 0.332159 1_1:+76640857 Msa0044970:CDS
TTCACGTTTAACTAAACTTT+AGG 0.333542 1_1:+76639164 Msa0044970:five_prime_UTR
CCCAAGCCAATAACAAGATT+TGG 0.335913 1_1:+76639435 Msa0044970:CDS
TATGTCATTGGACATGGATT+TGG 0.336553 1_1:+76639601 Msa0044970:CDS
GAATGACGACGGTCGTGATT+AGG 0.339038 1_1:-76639836 None:intergenic
ATGTGAGTACATACTTTGAT+AGG 0.348611 1_1:+76640584 Msa0044970:CDS
TCCAAATCTTGTTATTGGCT+TGG 0.354363 1_1:-76639436 None:intergenic
CCAAATAACCAGTATGATAA+TGG 0.354637 1_1:-76642373 None:intergenic
GGTGAAAACTCTAGTGGTTA+AGG 0.355532 1_1:+76640543 Msa0044970:CDS
TTAGTAGCAAGGACACTGTT+AGG 0.356809 1_1:-76642739 None:intergenic
CCAAATCTTGTTATTGGCTT+GGG 0.357939 1_1:-76639435 None:intergenic
ACAATCACAAATTGAGTAGA+AGG 0.360639 1_1:+76643243 Msa0044970:exon
GGGATTGGGAATGGTGGTGG+TGG 0.363657 1_1:+76640877 Msa0044970:CDS
TGCAAAATTGTGTTTGGTTA+GGG 0.370280 1_1:+76640398 Msa0044970:CDS
TGTTCTAATATGTGGTAGAT+TGG 0.372968 1_1:+76640276 Msa0044970:CDS
AAAGAACCCTCTTTCTCAAT+AGG 0.374828 1_1:-76640348 None:intergenic
GTGCAAAATTGTGTTTGGTT+AGG 0.376067 1_1:+76640397 Msa0044970:CDS
AACCTTCCACTCTTGATGTT+AGG 0.378450 1_1:-76640772 None:intergenic
TTTATGTAAAGAGTTTCTTA+TGG 0.381078 1_1:+76643345 Msa0044970:three_prime_UTR
AAGTTTGTTCACTGCGGTTT+TGG 0.385413 1_1:-76642325 None:intergenic
CTGTTTCTTGGTGGGTACTT+TGG 0.387096 1_1:+76640513 Msa0044970:CDS
TTCACCGTTTATAGTCTTGA+AGG 0.388017 1_1:+76643005 Msa0044970:CDS
CAGCAAGGATTCGCCGTCAA+TGG 0.388996 1_1:+76639787 Msa0044970:CDS
CTGAGAAGCATAAGATTTGA+AGG 0.394553 1_1:-76639270 None:intergenic
GATCCACCGTCGCAACTAAT+CGG 0.395068 1_1:+76639545 Msa0044970:CDS
AAATCTGATGATAATGGGAT+TGG 0.402802 1_1:+76640862 Msa0044970:CDS
ATCGGGTGGGTCCATTAATC+TGG 0.405460 1_1:-76639981 None:intergenic
TGGTAGATTGGTTTCTGATT+GGG 0.406121 1_1:+76640288 Msa0044970:CDS
CCACTTTAACCATGTTCAAT+TGG 0.408862 1_1:-76643035 None:intergenic
TGTTGGCGGTCGTGGAGAAT+AGG 0.409760 1_1:-76639344 None:intergenic
GGCTGCTGTGTTGGCGGTCG+TGG 0.411125 1_1:-76639352 None:intergenic
GGTGGGTACTTTGGTGTGGT+TGG 0.411905 1_1:+76640522 Msa0044970:CDS
AAGAAAAGAAAGTAGGTATT+CGG 0.413917 1_1:-76639141 None:intergenic
ATAAATCAAAGAGTTTCTAT+TGG 0.418489 1_1:+76643416 Msa0044970:three_prime_UTR
CATCTATCTCCCACATCAAA+TGG 0.420933 1_1:-76642528 None:intergenic
GTGGTAGATTGGTTTCTGAT+TGG 0.422054 1_1:+76640287 Msa0044970:CDS
TTGAAGGAGCGTCTGATTCT+GGG 0.423129 1_1:+76641760 Msa0044970:CDS
GATCCTCTAGCTTAGCTTTG+TGG 0.429132 1_1:-76639526 None:intergenic
TTTGAGTGTTCCTTTGTTGA+GGG 0.432061 1_1:+76640204 Msa0044970:CDS
ACATGGGAGAAAGATATATC+AGG 0.439374 1_1:+76643091 Msa0044970:CDS
AATGGACCCACCCGATGAAC+CGG 0.440292 1_1:+76639988 Msa0044970:CDS
TAGGAAAGGCACTAGCTCTT+AGG 0.441340 1_1:-76640753 None:intergenic
ACTCTCGGGGCCGCCTTTGG+TGG 0.444265 1_1:+76640645 Msa0044970:CDS
TTGCTGTGTCTTCTCCGAAC+AGG 0.449131 1_1:-76639770 None:intergenic
TGTGAGCTCACAACTTGTCT+TGG 0.453149 1_1:+76642437 Msa0044970:CDS
TGATCCTTCAAGACTATAAA+CGG 0.453207 1_1:-76643009 None:intergenic
TAACAGTGTCCTTGCTACTA+AGG 0.454493 1_1:+76642741 Msa0044970:CDS
GATTAGCTTGATATCTACTA+AGG 0.455955 1_1:+76643379 Msa0044970:three_prime_UTR
TAGTTTGCATCACAGGGTTA+GGG 0.456148 1_1:-76639238 None:intergenic
GTTGGCGGTCGTGGAGAATA+GGG 0.456545 1_1:-76639343 None:intergenic
TGTCCAGGTTAATGCCTTCA+GGG 0.458204 1_1:+76642269 Msa0044970:intron
GGAATTTCCTATTGAGAAAG+AGG 0.459561 1_1:+76640341 Msa0044970:CDS
TCACAGGGTTAGGGTCTCTC+TGG 0.464016 1_1:-76639229 None:intergenic
AGCAAGGATTCGCCGTCAAT+GGG 0.468587 1_1:+76639788 Msa0044970:CDS
TAGAGAGTCGCGACTCGGTA+AGG 0.469846 1_1:-76643503 None:intergenic
AGATCTTCTATCCGGTTCAT+CGG 0.470858 1_1:-76639999 None:intergenic
CTTTGAGTGTTCCTTTGTTG+AGG 0.472992 1_1:+76640203 Msa0044970:CDS
AAAACCATAAATCTATTTGA+AGG 0.473072 1_1:+76641744 Msa0044970:CDS
ATAAAACGCATTAAGTCCTC+AGG 0.474659 1_1:-76641702 None:intergenic
AAGCTGTGCAAAATTGTGTT+TGG 0.475551 1_1:+76640392 Msa0044970:CDS
TTCTATCCGGTTCATCGGGT+GGG 0.475815 1_1:-76639994 None:intergenic
CTTCATAAACAGCGTGCCTC+CGG 0.476167 1_1:+76639575 Msa0044970:CDS
CGAGTTGAAAGTTAGTTTCG+AGG 0.476779 1_1:+76639706 Msa0044970:CDS
TATATCTTTCTCCCATGTCT+TGG 0.481099 1_1:-76643086 None:intergenic
ACATGGTTAAAGTGGCGATC+TGG 0.481594 1_1:+76643043 Msa0044970:CDS
TTTCAGGTGGGGTAGCTACA+TGG 0.484332 1_1:-76642819 None:intergenic
ATTATCGTATCTCAGAAATA+CGG 0.486565 1_1:-76642701 None:intergenic
TCAATAGAATCTCCCATGTC+AGG 0.487717 1_1:-76642787 None:intergenic
TCACCTGCGGGTAACGGTGG+TGG 0.488405 1_1:+76639863 Msa0044970:CDS
CGGAAAGTTAACGCCGGTGG+AGG 0.491627 1_1:+76639661 Msa0044970:CDS
TAATGAATATGGTTCGGCAT+GGG 0.492101 1_1:+76640965 Msa0044970:CDS
TCATCAGATTTCTTGGAAAG+TGG 0.493438 1_1:-76640850 None:intergenic
CGTCAATGGGTGAGTATGCT+CGG 0.493782 1_1:+76639801 Msa0044970:CDS
ATGTTGCTAGGCGCGGCTGC+AGG 0.494616 1_1:+76641100 Msa0044970:CDS
ATCCCATTCGAATTTGAAGC+TGG 0.495504 1_1:-76639731 None:intergenic
AATGGGATTGGGAATGGTGG+TGG 0.496908 1_1:+76640874 Msa0044970:CDS
GAAAAGAGCGGCTGCTGTGT+TGG 0.498772 1_1:-76639361 None:intergenic
CTGATCGTCTTCCAGCTAGT+TGG 0.498824 1_1:+76643217 Msa0044970:CDS
TCGAAAGGCGGAAGAGGAAG+AGG 0.498977 1_1:+76640672 Msa0044970:CDS
AGAGGAAAGGCTTGCTGATG+AGG 0.500044 1_1:+76640690 Msa0044970:CDS
GGAGAATAGGGAGCTGTTCG+TGG 0.500526 1_1:-76639331 None:intergenic
GATGAACCGGATAGAAGATC+TGG 0.501788 1_1:+76640001 Msa0044970:CDS
GATCTTCTATCCGGTTCATC+GGG 0.503203 1_1:-76639998 None:intergenic
TGGAAGTTCATTCTATGAGT+TGG 0.503678 1_1:-76643066 None:intergenic
GGAGATTCGAAAGGCGGAAG+AGG 0.504692 1_1:+76640666 Msa0044970:CDS
CGGTGATATGTCATTGGACA+TGG 0.505087 1_1:+76639595 Msa0044970:CDS
AATCTGATGATAATGGGATT+GGG 0.505675 1_1:+76640863 Msa0044970:CDS
CCTCCAATGCTTCGTTTGAG+AGG 0.506341 1_1:+76639909 Msa0044970:CDS
GCACTAGCTCTTAGGTCAGC+AGG 0.507575 1_1:-76640745 None:intergenic
ATCCAAATAACGTGTCGGCT+TGG 0.507985 1_1:+76640929 Msa0044970:CDS
AACCAGCTTCAAATTCGAAT+GGG 0.508508 1_1:+76639729 Msa0044970:CDS
AAGCTGTGAACGATCCTGTT+CGG 0.508743 1_1:+76639756 Msa0044970:CDS
CCTCTCAAACGAAGCATTGG+AGG 0.508854 1_1:-76639909 None:intergenic
AGGTTAATGCCTTCAGGGAG+AGG 0.510601 1_1:+76642274 Msa0044970:intron
GTTTGTGATCGAAACACTCT+CGG 0.513851 1_1:+76640630 Msa0044970:CDS
TGCCTCCGGTGATATGTCAT+TGG 0.514202 1_1:+76639589 Msa0044970:CDS
GTGATTGTTGTCCAACTAGC+TGG 0.516994 1_1:-76643228 None:intergenic
CTTCTATCCGGTTCATCGGG+TGG 0.521257 1_1:-76639995 None:intergenic
GTCGCGACTCGGTAAGGTGT+TGG 0.521513 1_1:-76643497 None:intergenic
GATGATAATGGGATTGGGAA+TGG 0.521877 1_1:+76640868 Msa0044970:CDS
TAGTAGCAAGGACACTGTTA+GGG 0.522100 1_1:-76642738 None:intergenic
CCACCGTTACCCGCAGGTGA+TGG 0.523525 1_1:-76639860 None:intergenic
AAGAGCGGCTGCTGTGTTGG+CGG 0.527336 1_1:-76639358 None:intergenic
CCAATTGAACATGGTTAAAG+TGG 0.527768 1_1:+76643035 Msa0044970:CDS
ACATGAGGCTACTAAGTACA+TGG 0.527915 1_1:-76643275 None:intergenic
GTTCCTCTCAAACGAAGCAT+TGG 0.529720 1_1:-76639912 None:intergenic
AGAGGTTAATGAATATGGTT+CGG 0.532380 1_1:+76640959 Msa0044970:CDS
ATGATGACAATGGTTGATGA+AGG 0.532525 1_1:-76638960 None:intergenic
GCATGGGGCACTTACTACAT+TGG 0.533191 1_1:+76640981 Msa0044970:CDS
ACCCGACCAGATCTTCTATC+CGG 0.536055 1_1:-76640007 None:intergenic
TCTCCATCACCTGCGGGTAA+CGG 0.536446 1_1:+76639857 Msa0044970:CDS
GTTCAGAAGTTGCAGAATGC+CGG 0.537436 1_1:+76640712 Msa0044970:CDS
TTTCCGATTAGTTGCGACGG+TGG 0.542126 1_1:-76639548 None:intergenic
ATGGAGGAGCTTCAGAATGA+AGG 0.543397 1_1:+76639626 Msa0044970:CDS
ATCTTGTTATTGGCTTGGGA+AGG 0.545695 1_1:-76639431 None:intergenic
AACTTGCCACTCTTAACCAC+AGG 0.546689 1_1:-76640820 None:intergenic
ACCGGATAGAAGATCTGGTC+GGG 0.546747 1_1:+76640006 Msa0044970:CDS
GTCTTTCTAGGACGATGTGA+GGG 0.547082 1_1:-76639042 None:intergenic
ATGATTCTTGTTCTAATATG+TGG 0.547822 1_1:+76640268 Msa0044970:CDS
GGACATGGATTTGGAGATGG+AGG 0.548013 1_1:+76639610 Msa0044970:CDS
TCGGTAAGGTGTTGGATAAG+AGG 0.548420 1_1:-76643489 None:intergenic
ACGACGACGTCTCCGGCCAT+AGG 0.549204 1_1:-76639383 None:intergenic
ACTACGGTAGAAATTATGTA+TGG 0.549810 1_1:-76642764 None:intergenic
CGTCATTCTCCATCACCTGC+GGG 0.550193 1_1:+76639851 Msa0044970:CDS
ACAAATCAGAAGTGAAAATG+AGG 0.550446 1_1:+76641047 Msa0044970:CDS
ACATCAAGAGTGGAAGGTTG+AGG 0.551793 1_1:+76640776 Msa0044970:CDS
ACGTGAAAAGAAAAGAAAGT+AGG 0.552854 1_1:-76639148 None:intergenic
AACTCGCGTTGAATCACCGT+GGG 0.553700 1_1:-76639689 None:intergenic
TTTGTGATCGAAACACTCTC+GGG 0.554279 1_1:+76640631 Msa0044970:CDS
GCCTTTCGAATCTCCACCAA+AGG 0.555304 1_1:-76640658 None:intergenic
TCTGGGATGATTGGGAGGAA+AGG 0.558110 1_1:+76640052 Msa0044970:CDS
ATGACGACGGTCGTGATTAG+GGG 0.560581 1_1:-76639834 None:intergenic
TGAAAATGTGATGCACATCA+AGG 0.560776 1_1:-76641927 None:intergenic
AAGTGCTCTCCTCTCCCTGA+AGG 0.560903 1_1:-76642283 None:intergenic
CAAATCCGCGTTGAAGAACT+GGG 0.562106 1_1:+76641789 Msa0044970:CDS
AATGAAGGTAACGTCGCTGA+CGG 0.565304 1_1:+76639641 Msa0044970:CDS
GAACCAGCTTCAAATTCGAA+TGG 0.566244 1_1:+76639728 Msa0044970:CDS
CAGTTTCATTGATAACAAGA+AGG 0.567068 1_1:+76642969 Msa0044970:intron
ACCGTGGGAGATTCCTCCAC+CGG 0.568309 1_1:-76639674 None:intergenic
TTCCTAACATCAAGAGTGGA+AGG 0.569646 1_1:+76640770 Msa0044970:CDS
GGATTGGGAATGGTGGTGGT+GGG 0.572317 1_1:+76640878 Msa0044970:CDS
TTGATAACAAGAAGGAGCAC+TGG 0.574489 1_1:+76642977 Msa0044970:CDS
TAGAATGAACTTCCAAGACA+TGG 0.577011 1_1:+76643074 Msa0044970:CDS
ATTGGACATGGATTTGGAGA+TGG 0.578623 1_1:+76639607 Msa0044970:CDS
AATGAATATGGTTCGGCATG+GGG 0.578953 1_1:+76640966 Msa0044970:CDS
GCCTTTCCTAACATCAAGAG+TGG 0.581351 1_1:+76640766 Msa0044970:CDS
TATGTATGGCCTTAGTAGCA+AGG 0.582004 1_1:-76642750 None:intergenic
GCCTTTGGTGGAGATTCGAA+AGG 0.585486 1_1:+76640657 Msa0044970:CDS
TTCAAGACTATAAACGGTGA+AGG 0.586497 1_1:-76643003 None:intergenic
AAATCTTTCAGAATGTTGCT+AGG 0.587382 1_1:+76641088 Msa0044970:CDS
TCCACTCTTGATGTTAGGAA+AGG 0.591698 1_1:-76640767 None:intergenic
AATAGGGAGCTGTTCGTGGT+CGG 0.592308 1_1:-76639327 None:intergenic
TCACCACCACCGTTACCCGC+AGG 0.592576 1_1:-76639866 None:intergenic
ATGTGAAATTGATGCGACCC+AGG 0.595144 1_1:+76642548 Msa0044970:CDS
CAAGAAACAGACCAAAACCT+TGG 0.596695 1_1:-76640500 None:intergenic
TCTTGGTGGGTACTTTGGTG+TGG 0.598050 1_1:+76640518 Msa0044970:CDS
TGACGACGGTCGTGATTAGG+GGG 0.598378 1_1:-76639833 None:intergenic
AAATCTAGAGAGTCGCGACT+CGG 0.599039 1_1:-76643508 None:intergenic
TAACGGTGGTGGTGATTGCG+AGG 0.599664 1_1:+76639874 Msa0044970:CDS
AAACCTTGGTCACATATTGA+AGG 0.599670 1_1:-76640486 None:intergenic
TGTAATGCATCCATTTGATG+TGG 0.600406 1_1:+76642518 Msa0044970:CDS
TTTCTACCGTAGTCCTGACA+TGG 0.601376 1_1:+76642774 Msa0044970:CDS
GATGACAATGGTTGATGAAG+GGG 0.603016 1_1:-76638958 None:intergenic
GATAATGGGATTGGGAATGG+TGG 0.603168 1_1:+76640871 Msa0044970:CDS
TTTCGAATCTCCACCAAAGG+CGG 0.604367 1_1:-76640655 None:intergenic
GGTCTTTCTAGGACGATGTG+AGG 0.605622 1_1:-76639043 None:intergenic
GAATTTCCTATTGAGAAAGA+GGG 0.608181 1_1:+76640342 Msa0044970:CDS
TTAATGAATATGGTTCGGCA+TGG 0.609094 1_1:+76640964 Msa0044970:CDS
AAAAGCCCTGTGGTTAAGAG+TGG 0.609737 1_1:+76640814 Msa0044970:CDS
TTTCAGAATGTTGCTAGGCG+CGG 0.611025 1_1:+76641093 Msa0044970:CDS
CCATCACCTGCGGGTAACGG+TGG 0.611209 1_1:+76639860 Msa0044970:CDS
AATCTCCCATGTCAGGACTA+CGG 0.611921 1_1:-76642780 None:intergenic
CGATTACGCGGTTCAAACTG+TGG 0.612533 1_1:-76643534 None:intergenic
CGAGCATACTCACCCATTGA+CGG 0.614333 1_1:-76639800 None:intergenic
TGATGACAATGGTTGATGAA+GGG 0.616365 1_1:-76638959 None:intergenic
AGCTGGAAGACGATCAGAAG+TGG 0.616809 1_1:-76643211 None:intergenic
CTCATCACGAACATTGTCGC+CGG 0.617480 1_1:-76639489 None:intergenic
CATGTCCAATGACATATCAC+CGG 0.618141 1_1:-76639594 None:intergenic
AGGCGGAAGAGGAAGAGGAA+AGG 0.622102 1_1:+76640677 Msa0044970:CDS
TCGTCATTCTCCATCACCTG+CGG 0.624845 1_1:+76639850 Msa0044970:CDS
GGAAGACGATCAGAAGTGGT+AGG 0.626699 1_1:-76643207 None:intergenic
CCTCTAGCTTAGCTTTGTGG+CGG 0.631480 1_1:-76639523 None:intergenic
GTAATGCATCCATTTGATGT+GGG 0.631740 1_1:+76642519 Msa0044970:CDS
TGTCGGCTTGGAATATGAAG+AGG 0.635410 1_1:+76640941 Msa0044970:CDS
AAAAGAAAGTAGGTATTCGG+TGG 0.635993 1_1:-76639138 None:intergenic
CATGAGGCTACTAAGTACAT+GGG 0.637736 1_1:-76643274 None:intergenic
CAATCACAAATTGAGTAGAA+GGG 0.641112 1_1:+76643244 Msa0044970:exon
TTGCAGAGAGAGAGTTGTGG+TGG 0.641201 1_1:-76638904 None:intergenic
GCTCTAACATTAATGTCGAG+AGG 0.642384 1_1:-76643180 None:intergenic
AGAATGAACTTCCAAGACAT+GGG 0.642846 1_1:+76643075 Msa0044970:CDS
GTCAGCAGGTATGCTAACAC+CGG 0.644403 1_1:-76640731 None:intergenic
CTTAGTAGCCTCATGTTGCG+TGG 0.644679 1_1:+76643282 Msa0044970:three_prime_UTR
ACATAATGCCACGCAACATG+AGG 0.644692 1_1:-76643290 None:intergenic
AACCGGATAGAAGATCTGGT+CGG 0.644852 1_1:+76640005 Msa0044970:CDS
TTTGGTGGAGATTCGAAAGG+CGG 0.649479 1_1:+76640660 Msa0044970:CDS
AAGAGTGGAAGGTTGAGGAG+TGG 0.649657 1_1:+76640781 Msa0044970:CDS
CCTGCTAAAATGTAACACTT+CGG 0.652616 1_1:-76643316 None:intergenic
TGTCCTTCAATATGTGACCA+AGG 0.652704 1_1:+76640483 Msa0044970:CDS
GCCGGTGGAGGAATCTCCCA+CGG 0.653244 1_1:+76639673 Msa0044970:CDS
TGACGGAAAGTTAACGCCGG+TGG 0.654507 1_1:+76639658 Msa0044970:CDS
TGTTCGGAGAAGACACAGCA+AGG 0.654791 1_1:+76639772 Msa0044970:CDS
CCGCCACAAAGCTAAGCTAG+AGG 0.656696 1_1:+76639523 Msa0044970:CDS
GTGAAAATCAACGACGACGG+CGG 0.662140 1_1:+76639404 Msa0044970:CDS
GCTGAATCCAAATAACGTGT+CGG 0.662469 1_1:+76640924 Msa0044970:CDS
TTCTACCGTAGTCCTGACAT+GGG 0.663692 1_1:+76642775 Msa0044970:CDS
TAATGTCGAGAGGCATGAGA+CGG 0.670724 1_1:-76643170 None:intergenic
TCTTTCTAGGACGATGTGAG+GGG 0.678504 1_1:-76639041 None:intergenic
GTGGTTGGTGAAAACTCTAG+TGG 0.683918 1_1:+76640537 Msa0044970:CDS
GGATCACGACCAATTGAACA+TGG 0.685709 1_1:+76643026 Msa0044970:CDS
ATCGTATCTCAGAAATACGG+TGG 0.688391 1_1:-76642698 None:intergenic
TAAAACGCATTAAGTCCTCA+GGG 0.688495 1_1:-76641701 None:intergenic
GTCCAATGACATATCACCGG+AGG 0.689612 1_1:-76639591 None:intergenic
TCGATGAAGTTTGTTCACTG+CGG 0.690334 1_1:-76642331 None:intergenic
TGGGAGAAAGATATATCAGG+AGG 0.691880 1_1:+76643094 Msa0044970:CDS
CGCTGACGGAAAGTTAACGC+CGG 0.693881 1_1:+76639655 Msa0044970:CDS
ACTTGCCACTCTTAACCACA+GGG 0.694699 1_1:-76640819 None:intergenic
GGATTGCAGAGAGAGAGTTG+TGG 0.697383 1_1:-76638907 None:intergenic
CTCCGGCCATAGGAAAAGAG+CGG 0.698377 1_1:-76639373 None:intergenic
TTGTGATCGAAACACTCTCG+GGG 0.699008 1_1:+76640632 Msa0044970:CDS
AACGATAATGATGATGACAA+TGG 0.699365 1_1:-76638970 None:intergenic
AGAGTCTTATCCCTCAACAA+AGG 0.699553 1_1:-76640214 None:intergenic
TGTTGAGGGATAAGACTCTG+TGG 0.700670 1_1:+76640218 Msa0044970:CDS
ATGAGGCTACTAAGTACATG+GGG 0.703671 1_1:-76643273 None:intergenic
GTCGTGAAAATCAACGACGA+CGG 0.711455 1_1:+76639401 Msa0044970:CDS
CAACTCGCGTTGAATCACCG+TGG 0.722386 1_1:-76639690 None:intergenic
CAGGTGATGGAGAATGACGA+CGG 0.731799 1_1:-76639847 None:intergenic
CTGCAGGTTTATATACCCTG+AGG 0.739699 1_1:+76641686 Msa0044970:intron
ATCCGCGTTGAAGAACTGGG+TGG 0.755991 1_1:+76641792 Msa0044970:CDS
TACCACCCAGTTCTTCAACG+CGG 0.756191 1_1:-76641794 None:intergenic
AATGCTTCAGAAAAGCCCTG+TGG 0.795880 1_1:+76640804 Msa0044970:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATCTATATATATATACTA+CGG - chr1_1:76641997-76642016 None:intergenic 10.0%
!!! TTGATTTTTTAGAATTGAAA+GGG - chr1_1:76639067-76639086 None:intergenic 15.0%
!!! TTTGATTTTTTAGAATTGAA+AGG - chr1_1:76639068-76639087 None:intergenic 15.0%
!!! TTGAGTTTGATTTTAATTAT+TGG + chr1_1:76640166-76640185 Msa0044970:CDS 15.0%
!! AAAATTCAAAAGACATAATT+AGG + chr1_1:76641305-76641324 Msa0044970:intron 15.0%
!! GTGTATATAGAAAAATTTCT+TGG + chr1_1:76639112-76639131 Msa0044970:five_prime_UTR 20.0%
!! TATGTCATATAAATCATGAT+TGG - chr1_1:76641151-76641170 None:intergenic 20.0%
!! AAAAATAAACCAAATAGAAG+GGG - chr1_1:76641338-76641357 None:intergenic 20.0%
!! GAAAAATAAACCAAATAGAA+GGG - chr1_1:76641339-76641358 None:intergenic 20.0%
!! TGAAAAATAAACCAAATAGA+AGG - chr1_1:76641340-76641359 None:intergenic 20.0%
!! AAAACCATAAATCTATTTGA+AGG + chr1_1:76641744-76641763 Msa0044970:CDS 20.0%
!! AAACAATACTAAAGAAGAAA+AGG - chr1_1:76641865-76641884 None:intergenic 20.0%
!! TTTATGTAAAGAGTTTCTTA+TGG + chr1_1:76643345-76643364 Msa0044970:three_prime_UTR 20.0%
!! ATAAATCAAAGAGTTTCTAT+TGG + chr1_1:76643416-76643435 Msa0044970:three_prime_UTR 20.0%
! AAGAAAAGAAAGTAGGTATT+CGG - chr1_1:76639144-76639163 None:intergenic 25.0%
! TTCACGTTTAACTAAACTTT+AGG + chr1_1:76639164-76639183 Msa0044970:five_prime_UTR 25.0%
!!! TTTTAATAGTTTGCATCACA+GGG - chr1_1:76639247-76639266 None:intergenic 25.0%
!!! TTTTTAATAGTTTGCATCAC+AGG - chr1_1:76639248-76639267 None:intergenic 25.0%
! TAAAACTAAGTCCAGATTAA+TGG + chr1_1:76639970-76639989 Msa0044970:CDS 25.0%
! ATGATTCTTGTTCTAATATG+TGG + chr1_1:76640268-76640287 Msa0044970:CDS 25.0%
! TATGAAGAGGTTAATGAATA+TGG + chr1_1:76640954-76640973 Msa0044970:CDS 25.0%
!! ACAAATGCATAAAAGTATAC+AGG - chr1_1:76641201-76641220 None:intergenic 25.0%
! TAATACCAAGAGAAAGAAAT+AGG - chr1_1:76641271-76641290 None:intergenic 25.0%
! ACTCAATTGATTATGTACAT+AGG - chr1_1:76641538-76641557 None:intergenic 25.0%
! TACATGTAATAAATGACAAG+TGG + chr1_1:76641607-76641626 Msa0044970:intron 25.0%
! GAGAAAGGATTAATAAACAA+TGG - chr1_1:76641634-76641653 None:intergenic 25.0%
! AAATAAAATGACAGAGAGAA+AGG - chr1_1:76641649-76641668 None:intergenic 25.0%
! AGGAAACATATGAAATTACA+CGG - chr1_1:76641845-76641864 None:intergenic 25.0%
! TCTATATATATATACTACGG+CGG - chr1_1:76641994-76642013 None:intergenic 25.0%
! AAACAAAATCAAAAGTAACC+AGG - chr1_1:76642177-76642196 None:intergenic 25.0%
!! TATTGTTCATTTTATTGTCC+AGG + chr1_1:76642254-76642273 Msa0044970:intron 25.0%
! TAGAGATATAAACATTACCT+GGG - chr1_1:76642568-76642587 None:intergenic 25.0%
! ATTATCGTATCTCAGAAATA+CGG - chr1_1:76642704-76642723 None:intergenic 25.0%
! CAAATATGCAAAGATAATGA+AGG - chr1_1:76642904-76642923 None:intergenic 25.0%
! CATTATCTTTGCATATTTGT+TGG + chr1_1:76642905-76642924 Msa0044970:intron 25.0%
!! TTGTAGTCAATAACGATTTT+AGG - chr1_1:76642947-76642966 None:intergenic 25.0%
! AACGATAATGATGATGACAA+TGG - chr1_1:76638973-76638992 None:intergenic 30.0%
ACGTGAAAAGAAAAGAAAGT+AGG - chr1_1:76639151-76639170 None:intergenic 30.0%
! TTCTCTCCAAATCTTGTTAT+TGG - chr1_1:76639444-76639463 None:intergenic 30.0%
! TGATGAAGATGATCCTTTTA+TGG + chr1_1:76640081-76640100 Msa0044970:CDS 30.0%
! TGTGTTTTCTTATACTCATC+TGG - chr1_1:76640118-76640137 None:intergenic 30.0%
AGAAAACACATTTCAGTCTT+TGG + chr1_1:76640128-76640147 Msa0044970:CDS 30.0%
TGTTCTAATATGTGGTAGAT+TGG + chr1_1:76640276-76640295 Msa0044970:CDS 30.0%
! TTGCTGTGTTTTGTATTGAA+AGG + chr1_1:76640320-76640339 Msa0044970:CDS 30.0%
GAATTTCCTATTGAGAAAGA+GGG + chr1_1:76640342-76640361 Msa0044970:CDS 30.0%
!!! AGGGTTCTTTATTTTGTGTA+TGG + chr1_1:76640361-76640380 Msa0044970:CDS 30.0%
!!! TTTATTTTGTGTATGGTGTC+AGG + chr1_1:76640368-76640387 Msa0044970:CDS 30.0%
TGCAAAATTGTGTTTGGTTA+GGG + chr1_1:76640398-76640417 Msa0044970:CDS 30.0%
ATGTGAGTACATACTTTGAT+AGG + chr1_1:76640584-76640603 Msa0044970:CDS 30.0%
TCCAAGAAATCTGATGATAA+TGG + chr1_1:76640856-76640875 Msa0044970:CDS 30.0%
CCAAGAAATCTGATGATAAT+GGG + chr1_1:76640857-76640876 Msa0044970:CDS 30.0%
!! AAATCTGATGATAATGGGAT+TGG + chr1_1:76640862-76640881 Msa0044970:CDS 30.0%
!! AATCTGATGATAATGGGATT+GGG + chr1_1:76640863-76640882 Msa0044970:CDS 30.0%
AGAGGTTAATGAATATGGTT+CGG + chr1_1:76640959-76640978 Msa0044970:CDS 30.0%
!! ATTTTCACTTCTGATTTGTG+TGG - chr1_1:76641046-76641065 None:intergenic 30.0%
ACAAATCAGAAGTGAAAATG+AGG + chr1_1:76641047-76641066 Msa0044970:CDS 30.0%
AAATCTTTCAGAATGTTGCT+AGG + chr1_1:76641088-76641107 Msa0044970:CDS 30.0%
! TAACTCCTATTTCTTTCTCT+TGG + chr1_1:76641263-76641282 Msa0044970:intron 30.0%
CTTTCTCTTGGTATTATGTA+TGG + chr1_1:76641275-76641294 Msa0044970:intron 30.0%
TAGTGTGACCAATAAAGAAA+AGG + chr1_1:76641562-76641581 Msa0044970:intron 30.0%
! GACAGAAACCTTTTCTTTAT+TGG - chr1_1:76641573-76641592 None:intergenic 30.0%
CTTTAGTATTGTTTGTCTGA+TGG + chr1_1:76641871-76641890 Msa0044970:intron 30.0%
! TCTGATGGAATATCTTTTAG+AGG + chr1_1:76641886-76641905 Msa0044970:intron 30.0%
! TGTGCATCACATTTTCATTA+TGG + chr1_1:76641933-76641952 Msa0044970:CDS 30.0%
CTATATATATATACTACGGC+GGG - chr1_1:76641993-76642012 None:intergenic 30.0%
TAGTTGCATCTGATTAAACT+TGG + chr1_1:76642056-76642075 Msa0044970:intron 30.0%
CCAAATAACCAGTATGATAA+TGG - chr1_1:76642376-76642395 None:intergenic 30.0%
! CCATTATCATACTGGTTATT+TGG + chr1_1:76642373-76642392 Msa0044970:CDS 30.0%
GCTCACAAAAAGAAGAAATT+TGG - chr1_1:76642424-76642443 None:intergenic 30.0%
GTCTTGGTTGCATTTATATT+CGG + chr1_1:76642453-76642472 Msa0044970:CDS 30.0%
CTAGAGATATAAACATTACC+TGG - chr1_1:76642569-76642588 None:intergenic 30.0%
CAGGTAATGTTTATATCTCT+AGG + chr1_1:76642567-76642586 Msa0044970:intron 30.0%
AAATCACAAGCAAAAATGAG+GGG - chr1_1:76642647-76642666 None:intergenic 30.0%
GAAATCACAAGCAAAAATGA+GGG - chr1_1:76642648-76642667 None:intergenic 30.0%
TGAAATCACAAGCAAAAATG+AGG - chr1_1:76642649-76642668 None:intergenic 30.0%
! TTTTTGCTTGTGATTTCAGA+TGG + chr1_1:76642651-76642670 Msa0044970:intron 30.0%
ACTACGGTAGAAATTATGTA+TGG - chr1_1:76642767-76642786 None:intergenic 30.0%
! TTCATGAGTGAAATCTTTTC+AGG - chr1_1:76642838-76642857 None:intergenic 30.0%
! CAGTTTCATTGATAACAAGA+AGG + chr1_1:76642969-76642988 Msa0044970:intron 30.0%
TGATCCTTCAAGACTATAAA+CGG - chr1_1:76643012-76643031 None:intergenic 30.0%
!!! AAGAGTTGATGAAGATTTTC+AGG + chr1_1:76643130-76643149 Msa0044970:CDS 30.0%
!!! AGAGTTGATGAAGATTTTCA+GGG + chr1_1:76643131-76643150 Msa0044970:CDS 30.0%
ACAATCACAAATTGAGTAGA+AGG + chr1_1:76643243-76643262 Msa0044970:exon 30.0%
CAATCACAAATTGAGTAGAA+GGG + chr1_1:76643244-76643263 Msa0044970:exon 30.0%
!! GATTAGCTTGATATCTACTA+AGG + chr1_1:76643379-76643398 Msa0044970:three_prime_UTR 30.0%
!! TGATGACAATGGTTGATGAA+GGG - chr1_1:76638962-76638981 None:intergenic 35.0%
!! ATGATGACAATGGTTGATGA+AGG - chr1_1:76638963-76638982 None:intergenic 35.0%
AGAATTGAAAGGGTCTTTCT+AGG - chr1_1:76639057-76639076 None:intergenic 35.0%
AAAAGAAAGTAGGTATTCGG+TGG - chr1_1:76639141-76639160 None:intergenic 35.0%
! CTGAGAAGCATAAGATTTGA+AGG - chr1_1:76639273-76639292 None:intergenic 35.0%
!! CCAAATCTTGTTATTGGCTT+GGG - chr1_1:76639438-76639457 None:intergenic 35.0%
!! TCCAAATCTTGTTATTGGCT+TGG - chr1_1:76639439-76639458 None:intergenic 35.0%
!!! TACGATTTTTGGAATGACAC+CGG + chr1_1:76639470-76639489 Msa0044970:CDS 35.0%
!! AATTTTCCGATTAGTTGCGA+CGG - chr1_1:76639554-76639573 None:intergenic 35.0%
TATGTCATTGGACATGGATT+TGG + chr1_1:76639601-76639620 Msa0044970:CDS 35.0%
AACCAGCTTCAAATTCGAAT+GGG + chr1_1:76639729-76639748 Msa0044970:CDS 35.0%
! TTGATTTTCTCTGCATTGAG+AGG - chr1_1:76639937-76639956 None:intergenic 35.0%
! AGATGATCCTTTTATGGAAG+AGG + chr1_1:76640087-76640106 Msa0044970:CDS 35.0%
GGAAAATCCTCTTCCATAAA+AGG - chr1_1:76640097-76640116 None:intergenic 35.0%
GTCTTTGGATTCTTCTTGAA+TGG + chr1_1:76640143-76640162 Msa0044970:CDS 35.0%
TTTGAGTGTTCCTTTGTTGA+GGG + chr1_1:76640204-76640223 Msa0044970:CDS 35.0%
!!! GCAGCTTAAGTTTTGGAAAT+GGG + chr1_1:76640240-76640259 Msa0044970:CDS 35.0%
!! TGGTAGATTGGTTTCTGATT+GGG + chr1_1:76640288-76640307 Msa0044970:CDS 35.0%
TGGTTTCTGATTGGGTTATT+AGG + chr1_1:76640296-76640315 Msa0044970:CDS 35.0%
GGAATTTCCTATTGAGAAAG+AGG + chr1_1:76640341-76640360 Msa0044970:CDS 35.0%
AAAGAACCCTCTTTCTCAAT+AGG - chr1_1:76640351-76640370 None:intergenic 35.0%
AAGCTGTGCAAAATTGTGTT+TGG + chr1_1:76640392-76640411 Msa0044970:CDS 35.0%
GTGCAAAATTGTGTTTGGTT+AGG + chr1_1:76640397-76640416 Msa0044970:CDS 35.0%
AAACCTTGGTCACATATTGA+AGG - chr1_1:76640489-76640508 None:intergenic 35.0%
! TCAATATGTGACCAAGGTTT+TGG + chr1_1:76640489-76640508 Msa0044970:CDS 35.0%
TCATCAGATTTCTTGGAAAG+TGG - chr1_1:76640853-76640872 None:intergenic 35.0%
CCCATTATCATCAGATTTCT+TGG - chr1_1:76640860-76640879 None:intergenic 35.0%
! TTAATGAATATGGTTCGGCA+TGG + chr1_1:76640964-76640983 Msa0044970:CDS 35.0%
! TAATGAATATGGTTCGGCAT+GGG + chr1_1:76640965-76640984 Msa0044970:CDS 35.0%
GGTGAGTAAGACTAGATTAA+TGG - chr1_1:76641130-76641149 None:intergenic 35.0%
! CATAAAAGTATACAGGTGTC+AGG - chr1_1:76641194-76641213 None:intergenic 35.0%
AAACATGACCAAATCACCTT+AGG + chr1_1:76641396-76641415 Msa0044970:intron 35.0%
AAAACTTGCCTAAGGTGATT+TGG - chr1_1:76641407-76641426 None:intergenic 35.0%
ACAGCATTAAAACTTGCCTA+AGG - chr1_1:76641415-76641434 None:intergenic 35.0%
TACTACTAGTGTAGTAGTCT+TGG + chr1_1:76641451-76641470 Msa0044970:intron 35.0%
TAAAACGCATTAAGTCCTCA+GGG - chr1_1:76641704-76641723 None:intergenic 35.0%
ATAAAACGCATTAAGTCCTC+AGG - chr1_1:76641705-76641724 None:intergenic 35.0%
CGCTCCTTCAAATAGATTTA+TGG - chr1_1:76641751-76641770 None:intergenic 35.0%
TGAAAATGTGATGCACATCA+AGG - chr1_1:76641930-76641949 None:intergenic 35.0%
TACAACAAGTGAATAACGTC+AGG - chr1_1:76641962-76641981 None:intergenic 35.0%
AAAACAGAGCTAGGAACTAT+GGG - chr1_1:76642021-76642040 None:intergenic 35.0%
!! AATCAGATGCAACTAGTCTT+AGG - chr1_1:76642051-76642070 None:intergenic 35.0%
CTTAGTTGCCATTATCATAC+TGG + chr1_1:76642365-76642384 Msa0044970:CDS 35.0%
!! GGTTATTTGGCTCTTGATAT+TGG + chr1_1:76642386-76642405 Msa0044970:CDS 35.0%
TGTAATGCATCCATTTGATG+TGG + chr1_1:76642518-76642537 Msa0044970:CDS 35.0%
GTAATGCATCCATTTGATGT+GGG + chr1_1:76642519-76642538 Msa0044970:CDS 35.0%
!!! TGAGTGAAATCTTTTCAGGT+GGG - chr1_1:76642834-76642853 None:intergenic 35.0%
!! ATGAGTGAAATCTTTTCAGG+TGG - chr1_1:76642835-76642854 None:intergenic 35.0%
TTCAAGACTATAAACGGTGA+AGG - chr1_1:76643006-76643025 None:intergenic 35.0%
! TTCACCGTTTATAGTCTTGA+AGG + chr1_1:76643005-76643024 Msa0044970:CDS 35.0%
CCACTTTAACCATGTTCAAT+TGG - chr1_1:76643038-76643057 None:intergenic 35.0%
CCAATTGAACATGGTTAAAG+TGG + chr1_1:76643035-76643054 Msa0044970:CDS 35.0%
TGGAAGTTCATTCTATGAGT+TGG - chr1_1:76643069-76643088 None:intergenic 35.0%
TAGAATGAACTTCCAAGACA+TGG + chr1_1:76643074-76643093 Msa0044970:CDS 35.0%
AGAATGAACTTCCAAGACAT+GGG + chr1_1:76643075-76643094 Msa0044970:CDS 35.0%
TATATCTTTCTCCCATGTCT+TGG - chr1_1:76643089-76643108 None:intergenic 35.0%
ACATGGGAGAAAGATATATC+AGG + chr1_1:76643091-76643110 Msa0044970:CDS 35.0%
CCTGCTAAAATGTAACACTT+CGG - chr1_1:76643319-76643338 None:intergenic 35.0%
!! CGAAGTGTTACATTTTAGCA+GGG + chr1_1:76643317-76643336 Msa0044970:three_prime_UTR 35.0%
!! GATGACAATGGTTGATGAAG+GGG - chr1_1:76638961-76638980 None:intergenic 40.0%
! TAGTTTGCATCACAGGGTTA+GGG - chr1_1:76639241-76639260 None:intergenic 40.0%
! ATAGTTTGCATCACAGGGTT+AGG - chr1_1:76639242-76639261 None:intergenic 40.0%
!! ATCTTGTTATTGGCTTGGGA+AGG - chr1_1:76639434-76639453 None:intergenic 40.0%
CCCAAGCCAATAACAAGATT+TGG + chr1_1:76639435-76639454 Msa0044970:CDS 40.0%
! GAGAATCCAGCTACGATTTT+TGG + chr1_1:76639459-76639478 Msa0044970:CDS 40.0%
GTCATTCCAAAAATCGTAGC+TGG - chr1_1:76639468-76639487 None:intergenic 40.0%
CATGTCCAATGACATATCAC+CGG - chr1_1:76639597-76639616 None:intergenic 40.0%
ATTGGACATGGATTTGGAGA+TGG + chr1_1:76639607-76639626 Msa0044970:CDS 40.0%
! CGAGTTGAAAGTTAGTTTCG+AGG + chr1_1:76639706-76639725 Msa0044970:CDS 40.0%
GAACCAGCTTCAAATTCGAA+TGG + chr1_1:76639728-76639747 Msa0044970:CDS 40.0%
! ATCCCATTCGAATTTGAAGC+TGG - chr1_1:76639734-76639753 None:intergenic 40.0%
AGATCTTCTATCCGGTTCAT+CGG - chr1_1:76640002-76640021 None:intergenic 40.0%
! AAATCGAGTCAGCTTTTGTC+TGG + chr1_1:76640034-76640053 Msa0044970:CDS 40.0%
! AATCGAGTCAGCTTTTGTCT+GGG + chr1_1:76640035-76640054 Msa0044970:CDS 40.0%
!! AGCTTTTGTCTGGGATGATT+GGG + chr1_1:76640044-76640063 Msa0044970:CDS 40.0%
CTTTGAGTGTTCCTTTGTTG+AGG + chr1_1:76640203-76640222 Msa0044970:CDS 40.0%
! AGAGTCTTATCCCTCAACAA+AGG - chr1_1:76640217-76640236 None:intergenic 40.0%
!!! GGCAGCTTAAGTTTTGGAAA+TGG + chr1_1:76640239-76640258 Msa0044970:CDS 40.0%
!! GTGGTAGATTGGTTTCTGAT+TGG + chr1_1:76640287-76640306 Msa0044970:CDS 40.0%
!!! TAGGGCTTGTTTTGATTGCA+TGG + chr1_1:76640416-76640435 Msa0044970:CDS 40.0%
TGTCCTTCAATATGTGACCA+AGG + chr1_1:76640483-76640502 Msa0044970:CDS 40.0%
CAAGAAACAGACCAAAACCT+TGG - chr1_1:76640503-76640522 None:intergenic 40.0%
!! CAAGGTTTTGGTCTGTTTCT+TGG + chr1_1:76640501-76640520 Msa0044970:CDS 40.0%
!! GTTTTGGTCTGTTTCTTGGT+GGG + chr1_1:76640505-76640524 Msa0044970:CDS 40.0%
GGTGAAAACTCTAGTGGTTA+AGG + chr1_1:76640543-76640562 Msa0044970:CDS 40.0%
GTTTGTGATCGAAACACTCT+CGG + chr1_1:76640630-76640649 Msa0044970:CDS 40.0%
TTTGTGATCGAAACACTCTC+GGG + chr1_1:76640631-76640650 Msa0044970:CDS 40.0%
TCCACTCTTGATGTTAGGAA+AGG - chr1_1:76640770-76640789 None:intergenic 40.0%
TTCCTAACATCAAGAGTGGA+AGG + chr1_1:76640770-76640789 Msa0044970:CDS 40.0%
AACCTTCCACTCTTGATGTT+AGG - chr1_1:76640775-76640794 None:intergenic 40.0%
!! GATGATAATGGGATTGGGAA+TGG + chr1_1:76640868-76640887 Msa0044970:CDS 40.0%
GCTGAATCCAAATAACGTGT+CGG + chr1_1:76640924-76640943 Msa0044970:CDS 40.0%
! AATGAATATGGTTCGGCATG+GGG + chr1_1:76640966-76640985 Msa0044970:CDS 40.0%
AAGTATACAGGTGTCAGGTA+TGG - chr1_1:76641189-76641208 None:intergenic 40.0%
CAAAACAGAGCTAGGAACTA+TGG - chr1_1:76642022-76642041 None:intergenic 40.0%
!! AAGTTTGTTCACTGCGGTTT+TGG - chr1_1:76642328-76642347 None:intergenic 40.0%
! TCGATGAAGTTTGTTCACTG+CGG - chr1_1:76642334-76642353 None:intergenic 40.0%
CATCTATCTCCCACATCAAA+TGG - chr1_1:76642531-76642550 None:intergenic 40.0%
ATCGTATCTCAGAAATACGG+TGG - chr1_1:76642701-76642720 None:intergenic 40.0%
TAGTAGCAAGGACACTGTTA+GGG - chr1_1:76642741-76642760 None:intergenic 40.0%
TTAGTAGCAAGGACACTGTT+AGG - chr1_1:76642742-76642761 None:intergenic 40.0%
TAACAGTGTCCTTGCTACTA+AGG + chr1_1:76642741-76642760 Msa0044970:CDS 40.0%
! TATGTATGGCCTTAGTAGCA+AGG - chr1_1:76642753-76642772 None:intergenic 40.0%
TCAATAGAATCTCCCATGTC+AGG - chr1_1:76642790-76642809 None:intergenic 40.0%
!!! GAGTGAAATCTTTTCAGGTG+GGG - chr1_1:76642833-76642852 None:intergenic 40.0%
! TTGATAACAAGAAGGAGCAC+TGG + chr1_1:76642977-76642996 Msa0044970:CDS 40.0%
TGGGAGAAAGATATATCAGG+AGG + chr1_1:76643094-76643113 Msa0044970:CDS 40.0%
GCTCTAACATTAATGTCGAG+AGG - chr1_1:76643183-76643202 None:intergenic 40.0%
ATGAGGCTACTAAGTACATG+GGG - chr1_1:76643276-76643295 None:intergenic 40.0%
CATGAGGCTACTAAGTACAT+GGG - chr1_1:76643277-76643296 None:intergenic 40.0%
ACATGAGGCTACTAAGTACA+TGG - chr1_1:76643278-76643297 None:intergenic 40.0%
!! CCGAAGTGTTACATTTTAGC+AGG + chr1_1:76643316-76643335 Msa0044970:three_prime_UTR 40.0%
!! GTGTTACATTTTAGCAGGGT+AGG + chr1_1:76643321-76643340 Msa0044970:three_prime_UTR 40.0%
!! TCTTTCTAGGACGATGTGAG+GGG - chr1_1:76639044-76639063 None:intergenic 45.0%
!! GTCTTTCTAGGACGATGTGA+GGG - chr1_1:76639045-76639064 None:intergenic 45.0%
GTCGTGAAAATCAACGACGA+CGG + chr1_1:76639401-76639420 Msa0044970:CDS 45.0%
!! GATCCTCTAGCTTAGCTTTG+TGG - chr1_1:76639529-76639548 None:intergenic 45.0%
CGGTGATATGTCATTGGACA+TGG + chr1_1:76639595-76639614 Msa0044970:CDS 45.0%
ATGGAGGAGCTTCAGAATGA+AGG + chr1_1:76639626-76639645 Msa0044970:CDS 45.0%
AATGAAGGTAACGTCGCTGA+CGG + chr1_1:76639641-76639660 Msa0044970:CDS 45.0%
AAGCTGTGAACGATCCTGTT+CGG + chr1_1:76639756-76639775 Msa0044970:CDS 45.0%
AATGACGACGGTCGTGATTA+GGG - chr1_1:76639838-76639857 None:intergenic 45.0%
GTTCCTCTCAAACGAAGCAT+TGG - chr1_1:76639915-76639934 None:intergenic 45.0%
GATCTTCTATCCGGTTCATC+GGG - chr1_1:76640001-76640020 None:intergenic 45.0%
GATGAACCGGATAGAAGATC+TGG + chr1_1:76640001-76640020 Msa0044970:CDS 45.0%
AACCGGATAGAAGATCTGGT+CGG + chr1_1:76640005-76640024 Msa0044970:CDS 45.0%
!! CAGCTTTTGTCTGGGATGAT+TGG + chr1_1:76640043-76640062 Msa0044970:CDS 45.0%
!! TTTTGTCTGGGATGATTGGG+AGG + chr1_1:76640047-76640066 Msa0044970:CDS 45.0%
TGTTGAGGGATAAGACTCTG+TGG + chr1_1:76640218-76640237 Msa0044970:CDS 45.0%
! CTCTGTGGCAGCTTAAGTTT+TGG + chr1_1:76640233-76640252 Msa0044970:CDS 45.0%
!! GGTTTTGGTCTGTTTCTTGG+TGG + chr1_1:76640504-76640523 Msa0044970:CDS 45.0%
! CTGTTTCTTGGTGGGTACTT+TGG + chr1_1:76640513-76640532 Msa0044970:CDS 45.0%
!! GTGGTTGGTGAAAACTCTAG+TGG + chr1_1:76640537-76640556 Msa0044970:CDS 45.0%
TTGTGATCGAAACACTCTCG+GGG + chr1_1:76640632-76640651 Msa0044970:CDS 45.0%
TTTCGAATCTCCACCAAAGG+CGG - chr1_1:76640658-76640677 None:intergenic 45.0%
TTTGGTGGAGATTCGAAAGG+CGG + chr1_1:76640660-76640679 Msa0044970:CDS 45.0%
GTTCAGAAGTTGCAGAATGC+CGG + chr1_1:76640712-76640731 Msa0044970:CDS 45.0%
!! TAGGAAAGGCACTAGCTCTT+AGG - chr1_1:76640756-76640775 None:intergenic 45.0%
GCCTTTCCTAACATCAAGAG+TGG + chr1_1:76640766-76640785 Msa0044970:CDS 45.0%
ACATCAAGAGTGGAAGGTTG+AGG + chr1_1:76640776-76640795 Msa0044970:CDS 45.0%
AATGCTTCAGAAAAGCCCTG+TGG + chr1_1:76640804-76640823 Msa0044970:CDS 45.0%
AAAAGCCCTGTGGTTAAGAG+TGG + chr1_1:76640814-76640833 Msa0044970:CDS 45.0%
ACTTGCCACTCTTAACCACA+GGG - chr1_1:76640822-76640841 None:intergenic 45.0%
AACTTGCCACTCTTAACCAC+AGG - chr1_1:76640823-76640842 None:intergenic 45.0%
!! GATAATGGGATTGGGAATGG+TGG + chr1_1:76640871-76640890 Msa0044970:CDS 45.0%
!! ATCCAAATAACGTGTCGGCT+TGG + chr1_1:76640929-76640948 Msa0044970:CDS 45.0%
TTCCAAGCCGACACGTTATT+TGG - chr1_1:76640934-76640953 None:intergenic 45.0%
!! TGTCGGCTTGGAATATGAAG+AGG + chr1_1:76640941-76640960 Msa0044970:CDS 45.0%
TTTCAGAATGTTGCTAGGCG+CGG + chr1_1:76641093-76641112 Msa0044970:CDS 45.0%
GGATGTCTTCCCCTTCTATT+TGG + chr1_1:76641326-76641345 Msa0044970:intron 45.0%
AAACCTGCAGTGCAGCAAAA+AGG - chr1_1:76641676-76641695 None:intergenic 45.0%
CTGCAGGTTTATATACCCTG+AGG + chr1_1:76641686-76641705 Msa0044970:intron 45.0%
! GCGTTTTATGCGAGAAGATG+AGG + chr1_1:76641716-76641735 Msa0044970:CDS 45.0%
!! TTTGAAGGAGCGTCTGATTC+TGG + chr1_1:76641759-76641778 Msa0044970:CDS 45.0%
!! TTGAAGGAGCGTCTGATTCT+GGG + chr1_1:76641760-76641779 Msa0044970:CDS 45.0%
CAAATCCGCGTTGAAGAACT+GGG + chr1_1:76641789-76641808 Msa0044970:CDS 45.0%
!! GATGCAACTAGTCTTAGGCA+GGG - chr1_1:76642046-76642065 None:intergenic 45.0%
!! AGATGCAACTAGTCTTAGGC+AGG - chr1_1:76642047-76642066 None:intergenic 45.0%
! ATCAAGAGTGTATTCGTGCC+TGG + chr1_1:76642156-76642175 Msa0044970:intron 45.0%
TTGTCCAGGTTAATGCCTTC+AGG + chr1_1:76642268-76642287 Msa0044970:intron 45.0%
TGTCCAGGTTAATGCCTTCA+GGG + chr1_1:76642269-76642288 Msa0044970:intron 45.0%
TGTGAGCTCACAACTTGTCT+TGG + chr1_1:76642437-76642456 Msa0044970:CDS 45.0%
ATGTGAAATTGATGCGACCC+AGG + chr1_1:76642548-76642567 Msa0044970:CDS 45.0%
ACAAGCAAAAATGAGGGGAG+GGG - chr1_1:76642642-76642661 None:intergenic 45.0%
CACAAGCAAAAATGAGGGGA+GGG - chr1_1:76642643-76642662 None:intergenic 45.0%
TCACAAGCAAAAATGAGGGG+AGG - chr1_1:76642644-76642663 None:intergenic 45.0%
TTTCTACCGTAGTCCTGACA+TGG + chr1_1:76642774-76642793 Msa0044970:CDS 45.0%
TTCTACCGTAGTCCTGACAT+GGG + chr1_1:76642775-76642794 Msa0044970:CDS 45.0%
AATCTCCCATGTCAGGACTA+CGG - chr1_1:76642783-76642802 None:intergenic 45.0%
GGATCACGACCAATTGAACA+TGG + chr1_1:76643026-76643045 Msa0044970:CDS 45.0%
ACATGGTTAAAGTGGCGATC+TGG + chr1_1:76643043-76643062 Msa0044970:CDS 45.0%
! TAATGTCGAGAGGCATGAGA+CGG - chr1_1:76643173-76643192 None:intergenic 45.0%
GTGATTGTTGTCCAACTAGC+TGG - chr1_1:76643231-76643250 None:intergenic 45.0%
ACATAATGCCACGCAACATG+AGG - chr1_1:76643293-76643312 None:intergenic 45.0%
!! TCGGTAAGGTGTTGGATAAG+AGG - chr1_1:76643492-76643511 None:intergenic 45.0%
AAATCTAGAGAGTCGCGACT+CGG - chr1_1:76643511-76643530 None:intergenic 45.0%
!!! TAATGTTTTTAAATAATTTA+TGG - chr1_1:76638931-76638950 None:intergenic 5.0%
TTGCAGAGAGAGAGTTGTGG+TGG - chr1_1:76638907-76638926 None:intergenic 50.0%
GGATTGCAGAGAGAGAGTTG+TGG - chr1_1:76638910-76638929 None:intergenic 50.0%
!! GGTCTTTCTAGGACGATGTG+AGG - chr1_1:76639046-76639065 None:intergenic 50.0%
AATAGGGAGCTGTTCGTGGT+CGG - chr1_1:76639330-76639349 None:intergenic 50.0%
! GATTTTCACGACGACGTCTC+CGG - chr1_1:76639393-76639412 None:intergenic 50.0%
GTGAAAATCAACGACGACGG+CGG + chr1_1:76639404-76639423 Msa0044970:CDS 50.0%
CTCATCACGAACATTGTCGC+CGG - chr1_1:76639492-76639511 None:intergenic 50.0%
!! CCTCTAGCTTAGCTTTGTGG+CGG - chr1_1:76639526-76639545 None:intergenic 50.0%
GATCCACCGTCGCAACTAAT+CGG + chr1_1:76639545-76639564 Msa0044970:CDS 50.0%
! TTTCCGATTAGTTGCGACGG+TGG - chr1_1:76639551-76639570 None:intergenic 50.0%
CTTCATAAACAGCGTGCCTC+CGG + chr1_1:76639575-76639594 Msa0044970:CDS 50.0%
TGCCTCCGGTGATATGTCAT+TGG + chr1_1:76639589-76639608 Msa0044970:CDS 50.0%
GTCCAATGACATATCACCGG+AGG - chr1_1:76639594-76639613 None:intergenic 50.0%
GGACATGGATTTGGAGATGG+AGG + chr1_1:76639610-76639629 Msa0044970:CDS 50.0%
AACTCGCGTTGAATCACCGT+GGG - chr1_1:76639692-76639711 None:intergenic 50.0%
TTGCTGTGTCTTCTCCGAAC+AGG - chr1_1:76639773-76639792 None:intergenic 50.0%
TGTTCGGAGAAGACACAGCA+AGG + chr1_1:76639772-76639791 Msa0044970:CDS 50.0%
AGCAAGGATTCGCCGTCAAT+GGG + chr1_1:76639788-76639807 Msa0044970:CDS 50.0%
CGAGCATACTCACCCATTGA+CGG - chr1_1:76639803-76639822 None:intergenic 50.0%
CGTCAATGGGTGAGTATGCT+CGG + chr1_1:76639801-76639820 Msa0044970:CDS 50.0%
ATGACGACGGTCGTGATTAG+GGG - chr1_1:76639837-76639856 None:intergenic 50.0%
GAATGACGACGGTCGTGATT+AGG - chr1_1:76639839-76639858 None:intergenic 50.0%
!! CAGGTGATGGAGAATGACGA+CGG - chr1_1:76639850-76639869 None:intergenic 50.0%
TCGTCATTCTCCATCACCTG+CGG + chr1_1:76639850-76639869 Msa0044970:CDS 50.0%
! GTGGTGATTGCGAGGTTTTG+AGG + chr1_1:76639882-76639901 Msa0044970:CDS 50.0%
!! CCTCTCAAACGAAGCATTGG+AGG - chr1_1:76639912-76639931 None:intergenic 50.0%
CCTCCAATGCTTCGTTTGAG+AGG + chr1_1:76639909-76639928 Msa0044970:CDS 50.0%
ATCGGGTGGGTCCATTAATC+TGG - chr1_1:76639984-76640003 None:intergenic 50.0%
TTCTATCCGGTTCATCGGGT+GGG - chr1_1:76639997-76640016 None:intergenic 50.0%
ACCGGATAGAAGATCTGGTC+GGG + chr1_1:76640006-76640025 Msa0044970:CDS 50.0%
ACCCGACCAGATCTTCTATC+CGG - chr1_1:76640010-76640029 None:intergenic 50.0%
! TCTGGGATGATTGGGAGGAA+AGG + chr1_1:76640052-76640071 Msa0044970:CDS 50.0%
! TCTTGGTGGGTACTTTGGTG+TGG + chr1_1:76640518-76640537 Msa0044970:CDS 50.0%
GCCTTTGGTGGAGATTCGAA+AGG + chr1_1:76640657-76640676 Msa0044970:CDS 50.0%
GCCTTTCGAATCTCCACCAA+AGG - chr1_1:76640661-76640680 None:intergenic 50.0%
!! AGAGGAAAGGCTTGCTGATG+AGG + chr1_1:76640690-76640709 Msa0044970:CDS 50.0%
GTCAGCAGGTATGCTAACAC+CGG - chr1_1:76640734-76640753 None:intergenic 50.0%
AAGAGTGGAAGGTTGAGGAG+TGG + chr1_1:76640781-76640800 Msa0044970:CDS 50.0%
AATGGGATTGGGAATGGTGG+TGG + chr1_1:76640874-76640893 Msa0044970:CDS 50.0%
! GCATGGGGCACTTACTACAT+TGG + chr1_1:76640981-76641000 Msa0044970:CDS 50.0%
! CTTCCTTTTTGCTGCACTGC+AGG + chr1_1:76641670-76641689 Msa0044970:intron 50.0%
GCAAATCCGCGTTGAAGAAC+TGG + chr1_1:76641788-76641807 Msa0044970:CDS 50.0%
TACCACCCAGTTCTTCAACG+CGG - chr1_1:76641797-76641816 None:intergenic 50.0%
!! TCTCCCTGAAGGCATTAACC+TGG - chr1_1:76642275-76642294 None:intergenic 50.0%
AGGTTAATGCCTTCAGGGAG+AGG + chr1_1:76642274-76642293 Msa0044970:intron 50.0%
GTCTTCTTGCAGTGCAAACC+TGG + chr1_1:76642604-76642623 Msa0044970:intron 50.0%
GAGGGGGACAAAATTAGACC+AGG - chr1_1:76642625-76642644 None:intergenic 50.0%
CAAGCAAAAATGAGGGGAGG+GGG - chr1_1:76642641-76642660 None:intergenic 50.0%
! TTTCAGGTGGGGTAGCTACA+TGG - chr1_1:76642822-76642841 None:intergenic 50.0%
GGAAGACGATCAGAAGTGGT+AGG - chr1_1:76643210-76643229 None:intergenic 50.0%
AGCTGGAAGACGATCAGAAG+TGG - chr1_1:76643214-76643233 None:intergenic 50.0%
CTGATCGTCTTCCAGCTAGT+TGG + chr1_1:76643217-76643236 Msa0044970:CDS 50.0%
CTTAGTAGCCTCATGTTGCG+TGG + chr1_1:76643282-76643301 Msa0044970:three_prime_UTR 50.0%
TCACAGGGTTAGGGTCTCTC+TGG - chr1_1:76639232-76639251 None:intergenic 55.0%
GGAGAATAGGGAGCTGTTCG+TGG - chr1_1:76639334-76639353 None:intergenic 55.0%
GTTGGCGGTCGTGGAGAATA+GGG - chr1_1:76639346-76639365 None:intergenic 55.0%
TGTTGGCGGTCGTGGAGAAT+AGG - chr1_1:76639347-76639366 None:intergenic 55.0%
GAAAAGAGCGGCTGCTGTGT+TGG - chr1_1:76639364-76639383 None:intergenic 55.0%
! CAGCAGCCGCTCTTTTCCTA+TGG + chr1_1:76639367-76639386 Msa0044970:CDS 55.0%
! AGCCGCTCTTTTCCTATGGC+CGG + chr1_1:76639371-76639390 Msa0044970:CDS 55.0%
CTCCGGCCATAGGAAAAGAG+CGG - chr1_1:76639376-76639395 None:intergenic 55.0%
CCGCCACAAAGCTAAGCTAG+AGG + chr1_1:76639523-76639542 Msa0044970:CDS 55.0%
CGCTGACGGAAAGTTAACGC+CGG + chr1_1:76639655-76639674 Msa0044970:CDS 55.0%
TGACGGAAAGTTAACGCCGG+TGG + chr1_1:76639658-76639677 Msa0044970:CDS 55.0%
CAACTCGCGTTGAATCACCG+TGG - chr1_1:76639693-76639712 None:intergenic 55.0%
CAGCAAGGATTCGCCGTCAA+TGG + chr1_1:76639787-76639806 Msa0044970:CDS 55.0%
TCGTGATTAGGGGGTTGTGG+AGG - chr1_1:76639827-76639846 None:intergenic 55.0%
TGACGACGGTCGTGATTAGG+GGG - chr1_1:76639836-76639855 None:intergenic 55.0%
CGTCATTCTCCATCACCTGC+GGG + chr1_1:76639851-76639870 Msa0044970:CDS 55.0%
TCTCCATCACCTGCGGGTAA+CGG + chr1_1:76639857-76639876 Msa0044970:CDS 55.0%
! TAACGGTGGTGGTGATTGCG+AGG + chr1_1:76639874-76639893 Msa0044970:CDS 55.0%
AATGGACCCACCCGATGAAC+CGG + chr1_1:76639988-76640007 Msa0044970:CDS 55.0%
CTTCTATCCGGTTCATCGGG+TGG - chr1_1:76639998-76640017 None:intergenic 55.0%
! GGTGGGTACTTTGGTGTGGT+TGG + chr1_1:76640522-76640541 Msa0044970:CDS 55.0%
GGAGATTCGAAAGGCGGAAG+AGG + chr1_1:76640666-76640685 Msa0044970:CDS 55.0%
TCGAAAGGCGGAAGAGGAAG+AGG + chr1_1:76640672-76640691 Msa0044970:CDS 55.0%
AGGCGGAAGAGGAAGAGGAA+AGG + chr1_1:76640677-76640696 Msa0044970:CDS 55.0%
! GCACTAGCTCTTAGGTCAGC+AGG - chr1_1:76640748-76640767 None:intergenic 55.0%
!! GGATTGGGAATGGTGGTGGT+GGG + chr1_1:76640878-76640897 Msa0044970:CDS 55.0%
ATCCGCGTTGAAGAACTGGG+TGG + chr1_1:76641792-76641811 Msa0044970:CDS 55.0%
GGCAGGGTCAAAACAGAGCT+AGG - chr1_1:76642030-76642049 None:intergenic 55.0%
AAGTGCTCTCCTCTCCCTGA+AGG - chr1_1:76642286-76642305 None:intergenic 55.0%
!! TAGAGAGTCGCGACTCGGTA+AGG - chr1_1:76643506-76643525 None:intergenic 55.0%
AAGAGCGGCTGCTGTGTTGG+CGG - chr1_1:76639361-76639380 None:intergenic 60.0%
CGGAAAGTTAACGCCGGTGG+AGG + chr1_1:76639661-76639680 Msa0044970:CDS 60.0%
ACCGTGGGAGATTCCTCCAC+CGG - chr1_1:76639677-76639696 None:intergenic 60.0%
CGGTCGTGATTAGGGGGTTG+TGG - chr1_1:76639830-76639849 None:intergenic 60.0%
!! GGGATTGGGAATGGTGGTGG+TGG + chr1_1:76640877-76640896 Msa0044970:CDS 60.0%
!! GTCGCGACTCGGTAAGGTGT+TGG - chr1_1:76643500-76643519 None:intergenic 60.0%
ACGACGACGTCTCCGGCCAT+AGG - chr1_1:76639386-76639405 None:intergenic 65.0%
GCCGGTGGAGGAATCTCCCA+CGG + chr1_1:76639673-76639692 Msa0044970:CDS 65.0%
CCACCGTTACCCGCAGGTGA+TGG - chr1_1:76639863-76639882 None:intergenic 65.0%
! CCATCACCTGCGGGTAACGG+TGG + chr1_1:76639860-76639879 Msa0044970:CDS 65.0%
! TCACCTGCGGGTAACGGTGG+TGG + chr1_1:76639863-76639882 Msa0044970:CDS 65.0%
TCACCACCACCGTTACCCGC+AGG - chr1_1:76639869-76639888 None:intergenic 65.0%
AACACTCTCGGGGCCGCCTT+TGG + chr1_1:76640642-76640661 Msa0044970:CDS 65.0%
ATGTTGCTAGGCGCGGCTGC+AGG + chr1_1:76641100-76641119 Msa0044970:CDS 65.0%
! GGCTGCTGTGTTGGCGGTCG+TGG - chr1_1:76639355-76639374 None:intergenic 70.0%
ACTCTCGGGGCCGCCTTTGG+TGG + chr1_1:76640645-76640664 Msa0044970:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76638903 76643550 76638903 ID=Msa0044970;Name=Msa0044970
chr1_1 mRNA 76638903 76643550 76638903 ID=Msa0044970-mRNA-1;Parent=Msa0044970;Name=Msa0044970-mRNA-1;_AED=0.04;_eAED=0.04;_QI=348|0.6|0.83|0.83|1|1|6|293|944
chr1_1 exon 76638903 76641121 76638903 ID=Msa0044970-mRNA-1:exon:26049;Parent=Msa0044970-mRNA-1
chr1_1 exon 76641692 76641813 76641692 ID=Msa0044970-mRNA-1:exon:26050;Parent=Msa0044970-mRNA-1
chr1_1 exon 76641906 76641964 76641906 ID=Msa0044970-mRNA-1:exon:26051;Parent=Msa0044970-mRNA-1
chr1_1 exon 76642276 76642569 76642276 ID=Msa0044970-mRNA-1:exon:26052;Parent=Msa0044970-mRNA-1
chr1_1 exon 76642670 76642872 76642670 ID=Msa0044970-mRNA-1:exon:26053;Parent=Msa0044970-mRNA-1
chr1_1 exon 76642972 76643550 76642972 ID=Msa0044970-mRNA-1:exon:26054;Parent=Msa0044970-mRNA-1
chr1_1 five_prime_UTR 76638903 76639250 76638903 ID=Msa0044970-mRNA-1:five_prime_utr;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76639251 76641121 76639251 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76641692 76641813 76641692 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76641906 76641964 76641906 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76642276 76642569 76642276 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76642670 76642872 76642670 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 CDS 76642972 76643257 76642972 ID=Msa0044970-mRNA-1:cds;Parent=Msa0044970-mRNA-1
chr1_1 three_prime_UTR 76643258 76643550 76643258 ID=Msa0044970-mRNA-1:three_prime_utr;Parent=Msa0044970-mRNA-1
Gene Sequence

>Msa0044970

ATGCAAACTATTAAAAAATCCTTCAAATCTTATGCTTCTCAGAACAATAAACATTCTAGAAAATTTTCTGCAGATTCCGACCACGAACAGCTCCCTATTCTCCACGACCGCCAACACAGCAGCCGCTCTTTTCCTATGGCCGGAGACGTCGTCGTGAAAATCAACGACGACGGCGGTGAACCTTCCCAAGCCAATAACAAGATTTGGAGAGAATCCAGCTACGATTTTTGGAATGACACCGGCGACAATGTTCGTGATGAGAGTTTTGATTTCCGCCACAAAGCTAAGCTAGAGGATCCACCGTCGCAACTAATCGGAAAATTTCTTCATAAACAGCGTGCCTCCGGTGATATGTCATTGGACATGGATTTGGAGATGGAGGAGCTTCAGAATGAAGGTAACGTCGCTGACGGAAAGTTAACGCCGGTGGAGGAATCTCCCACGGTGATTCAACGCGAGTTGAAAGTTAGTTTCGAGGAACCAGCTTCAAATTCGAATGGGATTGAAGCTGTGAACGATCCTGTTCGGAGAAGACACAGCAAGGATTCGCCGTCAATGGGTGAGTATGCTCGGCCTCCACAACCCCCTAATCACGACCGTCGTCATTCTCCATCACCTGCGGGTAACGGTGGTGGTGATTGCGAGGTTTTGAGGTGTTCCTCCAATGCTTCGTTTGAGAGGAACCTCTCAATGCAGAGAAAATCAACGTTAATGAAAACTAAAACTAAGTCCAGATTAATGGACCCACCCGATGAACCGGATAGAAGATCTGGTCGGGTTGCTAAATCGAGTCAGCTTTTGTCTGGGATGATTGGGAGGAAAGGTGATGATGATGAAGATGATCCTTTTATGGAAGAGGATTTTCCAGATGAGTATAAGAAAACACATTTCAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTAATTATTGGTGCATTAGTAACAACTTTGAGTGTTCCTTTGTTGAGGGATAAGACTCTGTGGCAGCTTAAGTTTTGGAAATGGGAAGTGATGATTCTTGTTCTAATATGTGGTAGATTGGTTTCTGATTGGGTTATTAGGATTGCTGTGTTTTGTATTGAAAGGAATTTCCTATTGAGAAAGAGGGTTCTTTATTTTGTGTATGGTGTCAGGAAAGCTGTGCAAAATTGTGTTTGGTTAGGGCTTGTTTTGATTGCATGGCATTTTCTGTTTGATAAGAGAGTTCAAAGAGAGACAAACAGTGATGTCCTTCAATATGTGACCAAGGTTTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTGGTGAAAACTCTAGTGGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGTACATACTTTGATAGGATTCAAGAGTCACTGTTTAATCAGTTTGTGATCGAAACACTCTCGGGGCCGCCTTTGGTGGAGATTCGAAAGGCGGAAGAGGAAGAGGAAAGGCTTGCTGATGAGGTTCAGAAGTTGCAGAATGCCGGTGTTAGCATACCTGCTGACCTAAGAGCTAGTGCCTTTCCTAACATCAAGAGTGGAAGGTTGAGGAGTGGAATGCTTCAGAAAAGCCCTGTGGTTAAGAGTGGCAAGTTTTCAATGCCACTTTCCAAGAAATCTGATGATAATGGGATTGGGAATGGTGGTGGTGGGATAACTATTGATCACTTGCACAAGCTGAATCCAAATAACGTGTCGGCTTGGAATATGAAGAGGTTAATGAATATGGTTCGGCATGGGGCACTTACTACATTGGATGAGCAGATACTTGATTCTTCTGCTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGCTGCAGGTTTATATACCCTGAGGACTTAATGCGTTTTATGCGAGAAGATGAGGCTATAAAAACCATAAATCTATTTGAAGGAGCGTCTGATTCTGGGAAAAAGCAAATCCGCGTTGAAGAACTGGGTGAGGCAATATTTGATAGCACTTCCTTGATGTGCATCACATTTTCATTATGGTTTCCTGACGTTAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACCGCAGTGAACAAACTTCATCGAATGCTCAATTTCTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCTACTACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTCGGAAACACATGCAAGACTGTATTTGAAGCAATCATATTTTTATTTGTAATGCATCCATTTGATGTGGGAGATAGATGTGAAATTGATGCGACCCAGATGGTTGTAGAAGAGATGAACATCTTGACCACCGTATTTCTGAGATACGATAATCAAAAGATAACGATCCCTAACAGTGTCCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTATTGAATTCTGTATCCATGTAGCTACCCCACCTGAAAAGATTTCACTCATGAAACACAGAATACATAATTTCATTGATAACAAGAAGGAGCACTGGTATCCTTCACCGTTTATAGTCTTGAAGGATCACGACCAATTGAACATGGTTAAAGTGGCGATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATATATCAGGAGGTCTCTTCTTATTGAAGAGTTGATGAAGATTTTCAGGGATCTCGACATTCAGTACCGTCTCATGCCTCTCGACATTAATGTTAGAGCTTTGCCTACCACTTCTGATCGTCTTCCAGCTAGTTGGACAACAATCACAAATTGA
Protein sequence

>Msa0044970

MQTIKKSFKSYASQNNKHSRKFSADSDHEQLPILHDRQHSSRSFPMAGDVVVKINDDGGEPSQANNKIWRESSYDFWNDTGDNVRDESFDFRHKAKLEDPPSQLIGKFLHKQRASGDMSLDMDLEMEELQNEGNVADGKLTPVEESPTVIQRELKVSFEEPASNSNGIEAVNDPVRRRHSKDSPSMGEYARPPQPPNHDRRHSPSPAGNGGGDCEVLRCSSNASFERNLSMQRKSTLMKTKTKSRLMDPPDEPDRRSGRVAKSSQLLSGMIGRKGDDDEDDPFMEEDFPDEYKKTHFSLWILLEWLSLILIIGALVTTLSVPLLRDKTLWQLKFWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVRKAVQNCVWLGLVLIAWHFLFDKRVQRETNSDVLQYVTKVLVCFLVGTLVWLVKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLADEVQKLQNAGVSIPADLRASAFPNIKSGRLRSGMLQKSPVVKSGKFSMPLSKKSDDNGIGNGGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSSADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGASDSGKKQIRVEELGEAIFDSTSLMCITFSLWFPDVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRYDNQKITIPNSVLATKAIHNFYRSPDMGDSIEFCIHVATPPEKISLMKHRIHNFIDNKKEHWYPSPFIVLKDHDQLNMVKVAIWPTHRMNFQDMGERYIRRSLLIEELMKIFRDLDIQYRLMPLDINVRALPTTSDRLPASWTTITN*