AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1053080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053080 MtrunA17_Chr7g0223041 84.615 338 20 4 1 329 1 315 0.0 565
Msa1053080 MtrunA17_Chr4g0031081 50.459 109 33 1 76 184 94 181 3.96e-28 110
Msa1053080 MtrunA17_Chr3g0110401 46.491 114 40 1 76 189 29 121 4.48e-24 97.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1053080 AT5G02530.2 38.028 213 77 4 1 180 1 191 7.65e-29 112
Msa1053080 AT5G02530.1 38.028 213 77 4 1 180 1 191 7.88e-29 113
Msa1053080 AT5G59950.4 37.981 208 75 7 1 186 1 176 2.66e-27 106
Msa1053080 AT5G59950.3 38.350 206 75 7 1 186 1 174 3.19e-27 107
Msa1053080 AT5G59950.5 37.981 208 75 7 1 186 1 176 6.54e-27 106
Msa1053080 AT5G59950.1 37.981 208 75 7 1 186 1 176 7.09e-27 106
Msa1053080 AT5G59950.2 49.550 111 34 2 76 186 22 110 4.42e-26 102
Msa1053080 AT5G37720.2 43.119 109 39 2 76 184 93 178 9.03e-20 88.2
Msa1053080 AT5G37720.1 43.119 109 39 2 76 184 93 178 9.99e-20 88.2
Msa1053080 AT1G66260.2 37.288 118 52 2 76 192 107 203 1.33e-18 85.1
Msa1053080 AT1G66260.1 37.288 118 52 2 76 192 107 203 1.33e-18 85.1

Find 101 sgRNAs with CRISPR-Local

Find 436 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCATTCATTATGATCAATT+TGG 0.135951 7_2:+22376624 Msa1053080:CDS
ATGCTATTAGTTACCGAATT+TGG 0.165877 7_2:+22377657 Msa1053080:three_prime_UTR
TACAGGGAAGAAAGAAAATT+TGG 0.190188 7_2:+22377254 Msa1053080:intron
GTCTAGGCCGGCTGGCATTT+TGG 0.219083 7_2:-22373691 None:intergenic
CGTGTATGGTCCTGCTTTCT+TGG 0.233960 7_2:-22377323 None:intergenic
AGGATTATGGTCATATGTTT+TGG 0.240436 7_2:+22377518 Msa1053080:three_prime_UTR
ATTTGGTTTGGGCGCTTAAA+AGG 0.241066 7_2:+22377674 Msa1053080:three_prime_UTR
ATTTGTCTAACTTGGATGAT+AGG 0.242394 7_2:+22374015 Msa1053080:CDS
TATGAGCTCTGGAACAAATT+TGG 0.244923 7_2:+22376866 Msa1053080:CDS
GGGCGCTTAAAAGGTATATT+TGG 0.263116 7_2:+22377683 Msa1053080:three_prime_UTR
CACTTGAAACTTCAAAGTTT+TGG 0.298618 7_2:+22377596 Msa1053080:three_prime_UTR
CACCTTGCAAAGACATCATT+TGG 0.314256 7_2:-22376822 None:intergenic
CCATTCATTATGATCAATTT+GGG 0.320300 7_2:+22376625 Msa1053080:CDS
CACCTTGCAAAGACATCATT+TGG 0.323688 7_2:-22376936 None:intergenic
ATTAGTTACCGAATTTGGTT+TGG 0.327298 7_2:+22377662 Msa1053080:three_prime_UTR
ACTCCTGCTGCTGCGCCTCT+TGG 0.343069 7_2:+22376777 Msa1053080:CDS
TGTTCCTCAAGAAATGGTTT+TGG 0.343432 7_2:+22373956 Msa1053080:CDS
TGAGCTTGTTGGAGCAAGTT+TGG 0.346832 7_2:+22376752 Msa1053080:CDS
CACCTTACAAAGACATCATT+TGG 0.348640 7_2:-22377011 None:intergenic
AAGTATTGGATAAAGGATTA+TGG 0.355186 7_2:+22377505 Msa1053080:three_prime_UTR
CATGAGCTATGGAACAAGTT+TGG 0.358886 7_2:+22376980 Msa1053080:CDS
CAAGTTAGACAAATAGAGTT+TGG 0.361511 7_2:-22374006 None:intergenic
TCTTGGTCGAAGTAGCTTAC+TGG 0.368386 7_2:+22376908 Msa1053080:CDS
TCGCAGACACCGTTGGAATC+TGG 0.370912 7_2:-22377358 None:intergenic
GACCTATTTACTCATATAAT+CGG 0.373037 7_2:-22377478 None:intergenic
CAAACTCTATTTGTCTAACT+TGG 0.383083 7_2:+22374007 Msa1053080:CDS
TTAAGCGCCCAAACCAAATT+CGG 0.387161 7_2:-22377670 None:intergenic
CTTGGACAAAGTAGCTTACT+AGG 0.389224 7_2:+22376795 Msa1053080:CDS
GTCAGAAAAGTATTGGATAA+AGG 0.392012 7_2:+22377498 Msa1053080:three_prime_UTR
TACAACAATATGAAGCTTGA+TGG 0.409513 7_2:+22376714 Msa1053080:CDS
TGGCAGATTTAATGTCTGTT+TGG 0.416178 7_2:+22377616 Msa1053080:three_prime_UTR
ACAGCTGTTGTTCTCGGAAG+AGG 0.419689 7_2:+22376584 Msa1053080:intron
GATCAATTTGGGAGATCAAA+AGG 0.422082 7_2:+22376636 Msa1053080:CDS
ACATTGCAAATTGAGCTTGT+TGG 0.429062 7_2:+22376741 Msa1053080:CDS
TTAGTTACCGAATTTGGTTT+GGG 0.432686 7_2:+22377663 Msa1053080:three_prime_UTR
GACAAATAGAGTTTGGTGAT+AGG 0.440244 7_2:-22373999 None:intergenic
TTTGTCTAACTTGGATGATA+GGG 0.442399 7_2:+22374016 Msa1053080:CDS
CCCAAATTGATCATAATGAA+TGG 0.454862 7_2:-22376625 None:intergenic
GAAAACAAAGGAAAAGGAAA+GGG 0.460023 7_2:+22377428 Msa1053080:CDS
TTCCGATTATATGAGTAAAT+AGG 0.461828 7_2:+22377476 Msa1053080:three_prime_UTR
TGTCCAAGAGGCGCAGCAGC+AGG 0.466031 7_2:-22376780 None:intergenic
CAGCAGAAGTTGTCTTTACA+AGG 0.468637 7_2:+22376661 Msa1053080:CDS
AGTCCTGGTCTTATGAGCTC+TGG 0.470269 7_2:+22376855 Msa1053080:CDS
ATGAAGGAAAACAAAGGAAA+AGG 0.471066 7_2:+22377422 Msa1053080:CDS
TAAATAGGTCAGAAAAGTAT+TGG 0.472122 7_2:+22377491 Msa1053080:three_prime_UTR
TGTTGATGCTTGCTACTGTT+TGG 0.473979 7_2:+22376229 Msa1053080:CDS
AAGTACCTGAGAGTGAGAAA+TGG 0.473990 7_2:-22373814 None:intergenic
AGGAGAACGGGAGTAAGAGT+AGG 0.474294 7_2:-22373668 None:intergenic
AGGTGTCAAATTCCGACTCC+TGG 0.478241 7_2:+22376954 Msa1053080:CDS
GCGAACATATTGGCTTTAGC+TGG 0.478380 7_2:-22377706 None:intergenic
GGAGAACGGGAGTAAGAGTA+GGG 0.480728 7_2:-22373667 None:intergenic
GTGGCGAGTTGGTCTGTGGT+TGG 0.480813 7_2:-22373751 None:intergenic
ACTCCTGCTGATATGCCTCT+TGG 0.494809 7_2:+22376891 Msa1053080:CDS
TGATGATGTTCCTCAAGAAA+TGG 0.502259 7_2:+22373950 Msa1053080:CDS
GTACTCCATTTCTCACTCTC+AGG 0.503892 7_2:+22373809 Msa1053080:CDS
TAATACATGAATGTCTTCGT+TGG 0.505479 7_2:-22374042 None:intergenic
AAAGAAAATTTGGAGGTAGC+AGG 0.508686 7_2:+22377264 Msa1053080:CDS
AGGTGCAAAATTCCAAGTCC+TGG 0.511611 7_2:+22376840 Msa1053080:CDS
GTTGGAGGTGCGGCGGTGAG+TGG 0.513530 7_2:-22373733 None:intergenic
GAGCTCATAAGACCAGGACT+TGG 0.514703 7_2:-22376852 None:intergenic
AGGGAAGAAAGAAAATTTGG+AGG 0.515320 7_2:+22377257 Msa1053080:intron
GACCAAATGATGTCTTTGTA+AGG 0.515429 7_2:+22377009 Msa1053080:CDS
GTATCGCTCAGAGGCTATGA+AGG 0.516903 7_2:+22377406 Msa1053080:CDS
CTTGGTCGAAGTAGCTTACT+GGG 0.517273 7_2:+22376909 Msa1053080:CDS
GGAAAACAAAGGAAAAGGAA+AGG 0.519285 7_2:+22377427 Msa1053080:CDS
CAGCTGTTGTTCTCGGAAGA+GGG 0.519739 7_2:+22376585 Msa1053080:intron
AGTGACATGTCTAGGCCGGC+TGG 0.531260 7_2:-22373699 None:intergenic
ACTCCTGGTTTCATGAGCTA+TGG 0.536177 7_2:+22376969 Msa1053080:CDS
CGACCAAGAGGCATATCAGC+AGG 0.536972 7_2:-22376894 None:intergenic
GTCTGTGGTTGGAGGTGCGG+CGG 0.537574 7_2:-22373740 None:intergenic
CTTGGAAGATAGCCATGTGT+TGG 0.550084 7_2:-22377305 None:intergenic
AGATCTTTCGCAGACACCGT+TGG 0.563012 7_2:-22377365 None:intergenic
TTTCGTCGAGTGACATGTCT+AGG 0.564360 7_2:-22373707 None:intergenic
TGATCCAAAACCATTTCTTG+AGG 0.565878 7_2:-22373960 None:intergenic
GTTCTCGGAAGAGGGTGAGT+TGG 0.566196 7_2:+22376593 Msa1053080:CDS
GCGAGTTGGTCTGTGGTTGG+AGG 0.570792 7_2:-22373748 None:intergenic
TGGCTATCTTCCAAGAAAGC+AGG 0.572819 7_2:+22377313 Msa1053080:CDS
GTCGAGTGACATGTCTAGGC+CGG 0.574701 7_2:-22373703 None:intergenic
TTGGTCTGTGGTTGGAGGTG+CGG 0.578364 7_2:-22373743 None:intergenic
TTCTCCTCCAAAATGCCAGC+CGG 0.579942 7_2:+22373684 Msa1053080:exon
TGAGAGTGAGAAATGGAGTA+CGG 0.588394 7_2:-22373807 None:intergenic
TGTCTTTACAAGGCAGTCTG+AGG 0.591733 7_2:+22376671 Msa1053080:CDS
CACAGACCAACTCGCCACCT+CGG 0.593169 7_2:+22373756 Msa1053080:CDS
CGAACGCCGAGGTGGCGAGT+TGG 0.593959 7_2:-22373762 None:intergenic
GTTCCATAGCTCATGAAACC+AGG 0.598365 7_2:-22376972 None:intergenic
GAAAGATCTTGATGAAGACT+TGG 0.606384 7_2:+22377379 Msa1053080:CDS
AACCAAATGATGTCTTTGCA+AGG 0.608753 7_2:+22376820 Msa1053080:CDS
GTTCCAGAGCTCATAAGACC+AGG 0.611855 7_2:-22376858 None:intergenic
AGCCAAATGATGTCTTTGCA+AGG 0.612404 7_2:+22376934 Msa1053080:CDS
AGGCTTTAGCAGCTCTCAAG+AGG 0.614864 7_2:+22376691 Msa1053080:CDS
TTTGGATTCTGATTTACATG+AGG 0.615711 7_2:+22377536 Msa1053080:three_prime_UTR
ATCTTGATGAAGACTTGGAG+AGG 0.624037 7_2:+22377384 Msa1053080:CDS
AGTAAGCTACTTTGTCCAAG+AGG 0.629482 7_2:-22376792 None:intergenic
AGCAAAACGCCAGATTCCAA+CGG 0.644000 7_2:+22377349 Msa1053080:CDS
AATAGCTCTGCACCAACACA+TGG 0.647051 7_2:+22377293 Msa1053080:CDS
TAGCTCATGAAACCAGGAGT+CGG 0.649403 7_2:-22376966 None:intergenic
GAGGCTATGAAGGAAAACAA+AGG 0.656184 7_2:+22377416 Msa1053080:CDS
CTTGGAGAGGTATCGCTCAG+AGG 0.658554 7_2:+22377397 Msa1053080:CDS
AGTAAGCTACTTCGACCAAG+AGG 0.658801 7_2:-22376906 None:intergenic
CGAGGTGGCGAGTTGGTCTG+TGG 0.663681 7_2:-22373755 None:intergenic
AGTTGCTGCGAACGCCGAGG+TGG 0.671552 7_2:-22373770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATTTTTCATATTATATTGA+TGG + chr7_2:22375446-22375465 Msa1053080:intron 10.0%
!!! TTTTTTACAACAAAAAAAAA+AGG - chr7_2:22376504-22376523 None:intergenic 10.0%
!!! TATTTTTCATATTATATTGA+TGG + chr7_2:22375446-22375465 Msa1053080:intron 10.0%
!!! TTTTTTACAACAAAAAAAAA+AGG - chr7_2:22376504-22376523 None:intergenic 10.0%
!!! CTTATTTATATCTGTAATTT+TGG + chr7_2:22374299-22374318 Msa1053080:intron 15.0%
!!! TATTTTCCATATTATATTGA+TGG + chr7_2:22374669-22374688 Msa1053080:intron 15.0%
!!! CAAATTTATATGAAATTTTG+TGG - chr7_2:22374701-22374720 None:intergenic 15.0%
!!! CTAAATAAAATTTTATCAAG+TGG - chr7_2:22374821-22374840 None:intergenic 15.0%
!!! ATAAAATTTTATTTAGTAGC+TGG + chr7_2:22374825-22374844 Msa1053080:intron 15.0%
!! GATGAAAATAATAAAAATAG+AGG - chr7_2:22374930-22374949 None:intergenic 15.0%
!!! AATATAGTTTTTATTATGTG+AGG + chr7_2:22375359-22375378 Msa1053080:intron 15.0%
!!! ATATAGTTTTTATTATGTGA+GGG + chr7_2:22375360-22375379 Msa1053080:intron 15.0%
!! GATGAAAATAATAAAAATAG+AGG - chr7_2:22374930-22374949 None:intergenic 15.0%
!!! TTAATAGATTTTCTTTCATA+AGG + chr7_2:22375874-22375893 Msa1053080:intron 15.0%
!!! TTGATACTATTTTTTTTTAC+AGG + chr7_2:22377237-22377256 Msa1053080:intron 15.0%
!!! TGATACTATTTTTTTTTACA+GGG + chr7_2:22377238-22377257 Msa1053080:intron 15.0%
!!! CTTATTTATATCTGTAATTT+TGG + chr7_2:22374299-22374318 Msa1053080:intron 15.0%
!!! TATTTTCCATATTATATTGA+TGG + chr7_2:22374669-22374688 Msa1053080:intron 15.0%
!!! CAAATTTATATGAAATTTTG+TGG - chr7_2:22374701-22374720 None:intergenic 15.0%
!!! CTAAATAAAATTTTATCAAG+TGG - chr7_2:22374821-22374840 None:intergenic 15.0%
!!! ATAAAATTTTATTTAGTAGC+TGG + chr7_2:22374825-22374844 Msa1053080:intron 15.0%
!! GATGAAAATAATAAAAATAG+AGG - chr7_2:22374930-22374949 None:intergenic 15.0%
!!! AATATAGTTTTTATTATGTG+AGG + chr7_2:22375359-22375378 Msa1053080:intron 15.0%
!!! ATATAGTTTTTATTATGTGA+GGG + chr7_2:22375360-22375379 Msa1053080:intron 15.0%
!! GATGAAAATAATAAAAATAG+AGG - chr7_2:22374930-22374949 None:intergenic 15.0%
!!! TTAATAGATTTTCTTTCATA+AGG + chr7_2:22375874-22375893 Msa1053080:intron 15.0%
!!! TTGATACTATTTTTTTTTAC+AGG + chr7_2:22377237-22377256 Msa1053080:intron 15.0%
!!! TGATACTATTTTTTTTTACA+GGG + chr7_2:22377238-22377257 Msa1053080:intron 15.0%
!!! ACAACAAGTCATTTTTTTAA+TGG - chr7_2:22374214-22374233 None:intergenic 20.0%
!!! TATAGTTTTTATTATGTGAG+GGG + chr7_2:22375361-22375380 Msa1053080:intron 20.0%
!!! GCAAATTATATGAATTTTTG+TGG - chr7_2:22375478-22375497 None:intergenic 20.0%
!! ACTACTAAAATCTTATTAAG+TGG - chr7_2:22375561-22375580 None:intergenic 20.0%
!!! CTTAATAAGATTTTAGTAGT+TGG + chr7_2:22375561-22375580 Msa1053080:intron 20.0%
!!! ACAACAAGTCATTTTTTTAA+TGG - chr7_2:22374214-22374233 None:intergenic 20.0%
!!! TATAGTTTTTATTATGTGAG+GGG + chr7_2:22375361-22375380 Msa1053080:intron 20.0%
!!! GCAAATTATATGAATTTTTG+TGG - chr7_2:22375478-22375497 None:intergenic 20.0%
!! ACTACTAAAATCTTATTAAG+TGG - chr7_2:22375561-22375580 None:intergenic 20.0%
!!! CTTAATAAGATTTTAGTAGT+TGG + chr7_2:22375561-22375580 Msa1053080:intron 20.0%
! AATCTATCATCTATGATACA+CGG - chr7_2:22374535-22374554 None:intergenic 25.0%
!!! TATTGTTGTTATTTTGTGAG+AGG + chr7_2:22374565-22374584 Msa1053080:intron 25.0%
!!! ATTGTTGTTATTTTGTGAGA+GGG + chr7_2:22374566-22374585 Msa1053080:intron 25.0%
! ACTTGACCATCAATATAATA+TGG - chr7_2:22374678-22374697 None:intergenic 25.0%
! TCTACAACTAAGTAATATTG+TGG + chr7_2:22374724-22374743 Msa1053080:intron 25.0%
!! AGAAGCTTATGATACATTTT+TGG + chr7_2:22374774-22374793 Msa1053080:intron 25.0%
! AATTAAGTAGTAGTACATCA+GGG + chr7_2:22375079-22375098 Msa1053080:intron 25.0%
!! TCTAACAGTTTTCTTTCATA+AGG + chr7_2:22375144-22375163 Msa1053080:intron 25.0%
!!! GAAGCTTATGATACATTTTT+TGG + chr7_2:22374775-22374794 Msa1053080:intron 25.0%
!!! TAAGATTTTAGTAGTTGGAT+TGG + chr7_2:22375566-22375585 Msa1053080:intron 25.0%
! GATATGACTTATGAGAAATT+TGG - chr7_2:22375705-22375724 None:intergenic 25.0%
!!! TTTTAGTTTCTCTGCATTAT+TGG + chr7_2:22376141-22376160 Msa1053080:intron 25.0%
!!! ATCGTTTGTTTTGAAGATAT+TGG + chr7_2:22376197-22376216 Msa1053080:CDS 25.0%
! TGGTGTATGAATCTTAATTT+GGG + chr7_2:22376298-22376317 Msa1053080:intron 25.0%
!! TCTTTTATGTCCTCTTTTAA+AGG + chr7_2:22376340-22376359 Msa1053080:intron 25.0%
!! CTTTGATTTACCTTTAAAAG+AGG - chr7_2:22376353-22376372 None:intergenic 25.0%
!!! AAAAAGGTTCTGAAAAGAAA+GGG - chr7_2:22376488-22376507 None:intergenic 25.0%
!!! AAAAAAGGTTCTGAAAAGAA+AGG - chr7_2:22376489-22376508 None:intergenic 25.0%
! TCCATTCATTATGATCAATT+TGG + chr7_2:22376624-22376643 Msa1053080:CDS 25.0%
! CCATTCATTATGATCAATTT+GGG + chr7_2:22376625-22376644 Msa1053080:CDS 25.0%
! AGTTTATTAGATGTTACACA+AGG - chr7_2:22377116-22377135 None:intergenic 25.0%
! TTCCGATTATATGAGTAAAT+AGG + chr7_2:22377476-22377495 Msa1053080:three_prime_UTR 25.0%
! GACCTATTTACTCATATAAT+CGG - chr7_2:22377481-22377500 None:intergenic 25.0%
!! TAAATAGGTCAGAAAAGTAT+TGG + chr7_2:22377491-22377510 Msa1053080:three_prime_UTR 25.0%
!!! AAGTATTGGATAAAGGATTA+TGG + chr7_2:22377505-22377524 Msa1053080:three_prime_UTR 25.0%
! AATCTATCATCTATGATACA+CGG - chr7_2:22374535-22374554 None:intergenic 25.0%
!!! TATTGTTGTTATTTTGTGAG+AGG + chr7_2:22374565-22374584 Msa1053080:intron 25.0%
!!! ATTGTTGTTATTTTGTGAGA+GGG + chr7_2:22374566-22374585 Msa1053080:intron 25.0%
! ACTTGACCATCAATATAATA+TGG - chr7_2:22374678-22374697 None:intergenic 25.0%
! TCTACAACTAAGTAATATTG+TGG + chr7_2:22374724-22374743 Msa1053080:intron 25.0%
!! AGAAGCTTATGATACATTTT+TGG + chr7_2:22374774-22374793 Msa1053080:intron 25.0%
! AATTAAGTAGTAGTACATCA+GGG + chr7_2:22375079-22375098 Msa1053080:intron 25.0%
!! TCTAACAGTTTTCTTTCATA+AGG + chr7_2:22375144-22375163 Msa1053080:intron 25.0%
!!! GAAGCTTATGATACATTTTT+TGG + chr7_2:22374775-22374794 Msa1053080:intron 25.0%
!!! TAAGATTTTAGTAGTTGGAT+TGG + chr7_2:22375566-22375585 Msa1053080:intron 25.0%
! GATATGACTTATGAGAAATT+TGG - chr7_2:22375705-22375724 None:intergenic 25.0%
!!! TTTTAGTTTCTCTGCATTAT+TGG + chr7_2:22376141-22376160 Msa1053080:intron 25.0%
!!! ATCGTTTGTTTTGAAGATAT+TGG + chr7_2:22376197-22376216 Msa1053080:CDS 25.0%
! TGGTGTATGAATCTTAATTT+GGG + chr7_2:22376298-22376317 Msa1053080:intron 25.0%
!! TCTTTTATGTCCTCTTTTAA+AGG + chr7_2:22376340-22376359 Msa1053080:intron 25.0%
!! CTTTGATTTACCTTTAAAAG+AGG - chr7_2:22376353-22376372 None:intergenic 25.0%
!!! AAAAAGGTTCTGAAAAGAAA+GGG - chr7_2:22376488-22376507 None:intergenic 25.0%
!!! AAAAAAGGTTCTGAAAAGAA+AGG - chr7_2:22376489-22376508 None:intergenic 25.0%
! TCCATTCATTATGATCAATT+TGG + chr7_2:22376624-22376643 Msa1053080:CDS 25.0%
! CCATTCATTATGATCAATTT+GGG + chr7_2:22376625-22376644 Msa1053080:CDS 25.0%
! AGTTTATTAGATGTTACACA+AGG - chr7_2:22377116-22377135 None:intergenic 25.0%
! TTCCGATTATATGAGTAAAT+AGG + chr7_2:22377476-22377495 Msa1053080:three_prime_UTR 25.0%
! GACCTATTTACTCATATAAT+CGG - chr7_2:22377481-22377500 None:intergenic 25.0%
!! TAAATAGGTCAGAAAAGTAT+TGG + chr7_2:22377491-22377510 Msa1053080:three_prime_UTR 25.0%
!!! AAGTATTGGATAAAGGATTA+TGG + chr7_2:22377505-22377524 Msa1053080:three_prime_UTR 25.0%
!!! AGTTTGGTGATAGGATTTTT+TGG - chr7_2:22373993-22374012 None:intergenic 30.0%
CAAGTTAGACAAATAGAGTT+TGG - chr7_2:22374009-22374028 None:intergenic 30.0%
CAAACTCTATTTGTCTAACT+TGG + chr7_2:22374007-22374026 Msa1053080:CDS 30.0%
ATTTGTCTAACTTGGATGAT+AGG + chr7_2:22374015-22374034 Msa1053080:CDS 30.0%
TTTGTCTAACTTGGATGATA+GGG + chr7_2:22374016-22374035 Msa1053080:CDS 30.0%
TAATACATGAATGTCTTCGT+TGG - chr7_2:22374045-22374064 None:intergenic 30.0%
TTGTTAAATAGCATCCATAG+CGG - chr7_2:22374642-22374661 None:intergenic 30.0%
!! ATTTTATTTAGTAGCTGGAC+TGG + chr7_2:22374830-22374849 Msa1053080:intron 30.0%
GGTATGACTTATGAGAAATT+TGG - chr7_2:22374970-22374989 None:intergenic 30.0%
CAATTAAGTAGTAGTACATC+AGG + chr7_2:22375078-22375097 Msa1053080:intron 30.0%
! TACCTGCTATTTAATAACAC+TGG + chr7_2:22375422-22375441 Msa1053080:intron 30.0%
! AACCAGTGTTATTAAATAGC+AGG - chr7_2:22375427-22375446 None:intergenic 30.0%
GTTATTGAGCCAAAATAACT+TGG + chr7_2:22375609-22375628 Msa1053080:intron 30.0%
! ACCTTTAAGCCAAGTTATTT+TGG - chr7_2:22375621-22375640 None:intergenic 30.0%
TCATAAGTCATATCAGTCTT+TGG + chr7_2:22375711-22375730 Msa1053080:intron 30.0%
!!! CATATCAGTCTTTGGTTTTA+TGG + chr7_2:22375719-22375738 Msa1053080:intron 30.0%
TTACTAACTCATGTAAAACG+TGG + chr7_2:22375744-22375763 Msa1053080:intron 30.0%
ATCTTGATGAATGAAGTACA+CGG + chr7_2:22375041-22375060 Msa1053080:intron 30.0%
ACAAAATATACCAGAGTATG+TGG - chr7_2:22375905-22375924 None:intergenic 30.0%
!!! TTTTAGCTTCTCTGCATTAT+TGG + chr7_2:22376043-22376062 Msa1053080:intron 30.0%
TTCATACACCAGATTGATAT+GGG - chr7_2:22376289-22376308 None:intergenic 30.0%
ATTCATACACCAGATTGATA+TGG - chr7_2:22376290-22376309 None:intergenic 30.0%
CTGGTGTATGAATCTTAATT+TGG + chr7_2:22376297-22376316 Msa1053080:intron 30.0%
GAGTCATTATTGCAATTAGA+AGG + chr7_2:22376372-22376391 Msa1053080:intron 30.0%
GATGAAGATGAAGATCAATT+GGG - chr7_2:22376446-22376465 None:intergenic 30.0%
TGATGAAGATGAAGATCAAT+TGG - chr7_2:22376447-22376466 None:intergenic 30.0%
!! AAAAGGTTCTGAAAAGAAAG+GGG - chr7_2:22376487-22376506 None:intergenic 30.0%
! TATTTTACAGCTGTTGTTCT+CGG + chr7_2:22376578-22376597 Msa1053080:intron 30.0%
CCCAAATTGATCATAATGAA+TGG - chr7_2:22376628-22376647 None:intergenic 30.0%
TACAACAATATGAAGCTTGA+TGG + chr7_2:22376714-22376733 Msa1053080:CDS 30.0%
! GATAAGGTGTTAAATACATG+TGG + chr7_2:22377196-22377215 Msa1053080:intron 30.0%
TACAGGGAAGAAAGAAAATT+TGG + chr7_2:22377254-22377273 Msa1053080:intron 30.0%
ATGAAGGAAAACAAAGGAAA+AGG + chr7_2:22377422-22377441 Msa1053080:CDS 30.0%
GAAAACAAAGGAAAAGGAAA+GGG + chr7_2:22377428-22377447 Msa1053080:CDS 30.0%
!! GTCAGAAAAGTATTGGATAA+AGG + chr7_2:22377498-22377517 Msa1053080:three_prime_UTR 30.0%
! AGGATTATGGTCATATGTTT+TGG + chr7_2:22377518-22377537 Msa1053080:three_prime_UTR 30.0%
TTTGGATTCTGATTTACATG+AGG + chr7_2:22377536-22377555 Msa1053080:three_prime_UTR 30.0%
! CACTTGAAACTTCAAAGTTT+TGG + chr7_2:22377596-22377615 Msa1053080:three_prime_UTR 30.0%
ATGCTATTAGTTACCGAATT+TGG + chr7_2:22377657-22377676 Msa1053080:three_prime_UTR 30.0%
ATTAGTTACCGAATTTGGTT+TGG + chr7_2:22377662-22377681 Msa1053080:three_prime_UTR 30.0%
! TTAGTTACCGAATTTGGTTT+GGG + chr7_2:22377663-22377682 Msa1053080:three_prime_UTR 30.0%
!!! AGTTTGGTGATAGGATTTTT+TGG - chr7_2:22373993-22374012 None:intergenic 30.0%
CAAGTTAGACAAATAGAGTT+TGG - chr7_2:22374009-22374028 None:intergenic 30.0%
CAAACTCTATTTGTCTAACT+TGG + chr7_2:22374007-22374026 Msa1053080:CDS 30.0%
ATTTGTCTAACTTGGATGAT+AGG + chr7_2:22374015-22374034 Msa1053080:CDS 30.0%
TTTGTCTAACTTGGATGATA+GGG + chr7_2:22374016-22374035 Msa1053080:CDS 30.0%
TAATACATGAATGTCTTCGT+TGG - chr7_2:22374045-22374064 None:intergenic 30.0%
TTGTTAAATAGCATCCATAG+CGG - chr7_2:22374642-22374661 None:intergenic 30.0%
!! ATTTTATTTAGTAGCTGGAC+TGG + chr7_2:22374830-22374849 Msa1053080:intron 30.0%
GGTATGACTTATGAGAAATT+TGG - chr7_2:22374970-22374989 None:intergenic 30.0%
CAATTAAGTAGTAGTACATC+AGG + chr7_2:22375078-22375097 Msa1053080:intron 30.0%
! TACCTGCTATTTAATAACAC+TGG + chr7_2:22375422-22375441 Msa1053080:intron 30.0%
! AACCAGTGTTATTAAATAGC+AGG - chr7_2:22375427-22375446 None:intergenic 30.0%
GTTATTGAGCCAAAATAACT+TGG + chr7_2:22375609-22375628 Msa1053080:intron 30.0%
! ACCTTTAAGCCAAGTTATTT+TGG - chr7_2:22375621-22375640 None:intergenic 30.0%
TCATAAGTCATATCAGTCTT+TGG + chr7_2:22375711-22375730 Msa1053080:intron 30.0%
!!! CATATCAGTCTTTGGTTTTA+TGG + chr7_2:22375719-22375738 Msa1053080:intron 30.0%
TTACTAACTCATGTAAAACG+TGG + chr7_2:22375744-22375763 Msa1053080:intron 30.0%
ATCTTGATGAATGAAGTACA+CGG + chr7_2:22375041-22375060 Msa1053080:intron 30.0%
ACAAAATATACCAGAGTATG+TGG - chr7_2:22375905-22375924 None:intergenic 30.0%
!!! TTTTAGCTTCTCTGCATTAT+TGG + chr7_2:22376043-22376062 Msa1053080:intron 30.0%
TTCATACACCAGATTGATAT+GGG - chr7_2:22376289-22376308 None:intergenic 30.0%
ATTCATACACCAGATTGATA+TGG - chr7_2:22376290-22376309 None:intergenic 30.0%
CTGGTGTATGAATCTTAATT+TGG + chr7_2:22376297-22376316 Msa1053080:intron 30.0%
GAGTCATTATTGCAATTAGA+AGG + chr7_2:22376372-22376391 Msa1053080:intron 30.0%
GATGAAGATGAAGATCAATT+GGG - chr7_2:22376446-22376465 None:intergenic 30.0%
TGATGAAGATGAAGATCAAT+TGG - chr7_2:22376447-22376466 None:intergenic 30.0%
!! AAAAGGTTCTGAAAAGAAAG+GGG - chr7_2:22376487-22376506 None:intergenic 30.0%
! TATTTTACAGCTGTTGTTCT+CGG + chr7_2:22376578-22376597 Msa1053080:intron 30.0%
CCCAAATTGATCATAATGAA+TGG - chr7_2:22376628-22376647 None:intergenic 30.0%
TACAACAATATGAAGCTTGA+TGG + chr7_2:22376714-22376733 Msa1053080:CDS 30.0%
! GATAAGGTGTTAAATACATG+TGG + chr7_2:22377196-22377215 Msa1053080:intron 30.0%
TACAGGGAAGAAAGAAAATT+TGG + chr7_2:22377254-22377273 Msa1053080:intron 30.0%
ATGAAGGAAAACAAAGGAAA+AGG + chr7_2:22377422-22377441 Msa1053080:CDS 30.0%
GAAAACAAAGGAAAAGGAAA+GGG + chr7_2:22377428-22377447 Msa1053080:CDS 30.0%
!! GTCAGAAAAGTATTGGATAA+AGG + chr7_2:22377498-22377517 Msa1053080:three_prime_UTR 30.0%
! AGGATTATGGTCATATGTTT+TGG + chr7_2:22377518-22377537 Msa1053080:three_prime_UTR 30.0%
TTTGGATTCTGATTTACATG+AGG + chr7_2:22377536-22377555 Msa1053080:three_prime_UTR 30.0%
! CACTTGAAACTTCAAAGTTT+TGG + chr7_2:22377596-22377615 Msa1053080:three_prime_UTR 30.0%
ATGCTATTAGTTACCGAATT+TGG + chr7_2:22377657-22377676 Msa1053080:three_prime_UTR 30.0%
ATTAGTTACCGAATTTGGTT+TGG + chr7_2:22377662-22377681 Msa1053080:three_prime_UTR 30.0%
! TTAGTTACCGAATTTGGTTT+GGG + chr7_2:22377663-22377682 Msa1053080:three_prime_UTR 30.0%
ATTCATGAAAATGCAGATGC+TGG + chr7_2:22373899-22373918 Msa1053080:intron 35.0%
! TGATGATGTTCCTCAAGAAA+TGG + chr7_2:22373950-22373969 Msa1053080:CDS 35.0%
! TGTTCCTCAAGAAATGGTTT+TGG + chr7_2:22373956-22373975 Msa1053080:CDS 35.0%
TGATCCAAAACCATTTCTTG+AGG - chr7_2:22373963-22373982 None:intergenic 35.0%
!!! GTGATAGGATTTTTTGGTTG+AGG - chr7_2:22373987-22374006 None:intergenic 35.0%
! GACAAATAGAGTTTGGTGAT+AGG - chr7_2:22374002-22374021 None:intergenic 35.0%
ATCATGTGTCAATGTCATGT+CGG - chr7_2:22374420-22374439 None:intergenic 35.0%
AGCTAAGTAACTTGGCTTAA+AGG + chr7_2:22374882-22374901 Msa1053080:intron 35.0%
TCATAAGTCATACCAGTCTT+TGG + chr7_2:22374976-22374995 Msa1053080:intron 35.0%
!!! CATACCAGTCTTTGGTTTTA+TGG + chr7_2:22374984-22375003 Msa1053080:intron 35.0%
GAATAGCAATCTATGATGCA+TGG - chr7_2:22375338-22375357 None:intergenic 35.0%
GCCAAAATAACTTGGCTTAA+AGG + chr7_2:22375617-22375636 Msa1053080:intron 35.0%
TTGACAAGTAGTAGTACATC+AGG + chr7_2:22375807-22375826 Msa1053080:intron 35.0%
TGACAAGTAGTAGTACATCA+GGG + chr7_2:22375808-22375827 Msa1053080:intron 35.0%
GCAAATTGTTGCAGTAACAA+GGG - chr7_2:22375984-22376003 None:intergenic 35.0%
AGCAAATTGTTGCAGTAACA+AGG - chr7_2:22375985-22376004 None:intergenic 35.0%
TCATACACCAGATTGATATG+GGG - chr7_2:22376288-22376307 None:intergenic 35.0%
GATCAATTTGGGAGATCAAA+AGG + chr7_2:22376636-22376655 Msa1053080:CDS 35.0%
ACATTGCAAATTGAGCTTGT+TGG + chr7_2:22376741-22376760 Msa1053080:CDS 35.0%
AACCAAATGATGTCTTTGCA+AGG + chr7_2:22376820-22376839 Msa1053080:CDS 35.0%
!! TATGAGCTCTGGAACAAATT+TGG + chr7_2:22376866-22376885 Msa1053080:CDS 35.0%
GACCAAATGATGTCTTTGTA+AGG + chr7_2:22377009-22377028 Msa1053080:CDS 35.0%
CACCTTACAAAGACATCATT+TGG - chr7_2:22377014-22377033 None:intergenic 35.0%
GAACAGAACTTGAGATTTCA+TGG - chr7_2:22377162-22377181 None:intergenic 35.0%
AGGGAAGAAAGAAAATTTGG+AGG + chr7_2:22377257-22377276 Msa1053080:intron 35.0%
AAAGAAAATTTGGAGGTAGC+AGG + chr7_2:22377264-22377283 Msa1053080:CDS 35.0%
GAAAGATCTTGATGAAGACT+TGG + chr7_2:22377379-22377398 Msa1053080:CDS 35.0%
GGAAAACAAAGGAAAAGGAA+AGG + chr7_2:22377427-22377446 Msa1053080:CDS 35.0%
TGGCAGATTTAATGTCTGTT+TGG + chr7_2:22377616-22377635 Msa1053080:three_prime_UTR 35.0%
ATTCATGAAAATGCAGATGC+TGG + chr7_2:22373899-22373918 Msa1053080:intron 35.0%
! TGATGATGTTCCTCAAGAAA+TGG + chr7_2:22373950-22373969 Msa1053080:CDS 35.0%
! TGTTCCTCAAGAAATGGTTT+TGG + chr7_2:22373956-22373975 Msa1053080:CDS 35.0%
TGATCCAAAACCATTTCTTG+AGG - chr7_2:22373963-22373982 None:intergenic 35.0%
!!! GTGATAGGATTTTTTGGTTG+AGG - chr7_2:22373987-22374006 None:intergenic 35.0%
! GACAAATAGAGTTTGGTGAT+AGG - chr7_2:22374002-22374021 None:intergenic 35.0%
ATCATGTGTCAATGTCATGT+CGG - chr7_2:22374420-22374439 None:intergenic 35.0%
AGCTAAGTAACTTGGCTTAA+AGG + chr7_2:22374882-22374901 Msa1053080:intron 35.0%
TCATAAGTCATACCAGTCTT+TGG + chr7_2:22374976-22374995 Msa1053080:intron 35.0%
!!! CATACCAGTCTTTGGTTTTA+TGG + chr7_2:22374984-22375003 Msa1053080:intron 35.0%
GAATAGCAATCTATGATGCA+TGG - chr7_2:22375338-22375357 None:intergenic 35.0%
GCCAAAATAACTTGGCTTAA+AGG + chr7_2:22375617-22375636 Msa1053080:intron 35.0%
TTGACAAGTAGTAGTACATC+AGG + chr7_2:22375807-22375826 Msa1053080:intron 35.0%
TGACAAGTAGTAGTACATCA+GGG + chr7_2:22375808-22375827 Msa1053080:intron 35.0%
GCAAATTGTTGCAGTAACAA+GGG - chr7_2:22375984-22376003 None:intergenic 35.0%
AGCAAATTGTTGCAGTAACA+AGG - chr7_2:22375985-22376004 None:intergenic 35.0%
TCATACACCAGATTGATATG+GGG - chr7_2:22376288-22376307 None:intergenic 35.0%
GATCAATTTGGGAGATCAAA+AGG + chr7_2:22376636-22376655 Msa1053080:CDS 35.0%
ACATTGCAAATTGAGCTTGT+TGG + chr7_2:22376741-22376760 Msa1053080:CDS 35.0%
AACCAAATGATGTCTTTGCA+AGG + chr7_2:22376820-22376839 Msa1053080:CDS 35.0%
!! TATGAGCTCTGGAACAAATT+TGG + chr7_2:22376866-22376885 Msa1053080:CDS 35.0%
GACCAAATGATGTCTTTGTA+AGG + chr7_2:22377009-22377028 Msa1053080:CDS 35.0%
CACCTTACAAAGACATCATT+TGG - chr7_2:22377014-22377033 None:intergenic 35.0%
GAACAGAACTTGAGATTTCA+TGG - chr7_2:22377162-22377181 None:intergenic 35.0%
AGGGAAGAAAGAAAATTTGG+AGG + chr7_2:22377257-22377276 Msa1053080:intron 35.0%
AAAGAAAATTTGGAGGTAGC+AGG + chr7_2:22377264-22377283 Msa1053080:CDS 35.0%
GAAAGATCTTGATGAAGACT+TGG + chr7_2:22377379-22377398 Msa1053080:CDS 35.0%
GGAAAACAAAGGAAAAGGAA+AGG + chr7_2:22377427-22377446 Msa1053080:CDS 35.0%
TGGCAGATTTAATGTCTGTT+TGG + chr7_2:22377616-22377635 Msa1053080:three_prime_UTR 35.0%
TGAGAGTGAGAAATGGAGTA+CGG - chr7_2:22373810-22373829 None:intergenic 40.0%
AAGTACCTGAGAGTGAGAAA+TGG - chr7_2:22373817-22373836 None:intergenic 40.0%
AGTCCTTGAGCTAAGTAACT+TGG + chr7_2:22374874-22374893 Msa1053080:intron 40.0%
AAGCCAAGTTACTTAGCTCA+AGG - chr7_2:22374880-22374899 None:intergenic 40.0%
AACGCCATAAAACCAAAGAC+TGG - chr7_2:22374991-22375010 None:intergenic 40.0%
CTAGCTCATCATGTAAAACG+TGG + chr7_2:22375012-22375031 Msa1053080:intron 40.0%
! CTTTTGTGAGCGTACACTAT+CGG + chr7_2:22375277-22375296 Msa1053080:intron 40.0%
TAAGGACAATCCACATACTC+TGG + chr7_2:22375892-22375911 Msa1053080:intron 40.0%
! TGTTGATGCTTGCTACTGTT+TGG + chr7_2:22376229-22376248 Msa1053080:CDS 40.0%
ATGACAACCCCATATCAATC+TGG + chr7_2:22376278-22376297 Msa1053080:intron 40.0%
!! TAGGGGTGAATTTGGTGTTT+GGG - chr7_2:22376409-22376428 None:intergenic 40.0%
ATTAGTGGTAGGGGTGAATT+TGG - chr7_2:22376417-22376436 None:intergenic 40.0%
TCAATTGGGCGTAACATTAG+TGG - chr7_2:22376432-22376451 None:intergenic 40.0%
CAGCAGAAGTTGTCTTTACA+AGG + chr7_2:22376661-22376680 Msa1053080:CDS 40.0%
! AGTAAGCTACTTTGTCCAAG+AGG - chr7_2:22376795-22376814 None:intergenic 40.0%
CTTGGACAAAGTAGCTTACT+AGG + chr7_2:22376795-22376814 Msa1053080:CDS 40.0%
CACCTTGCAAAGACATCATT+TGG - chr7_2:22376825-22376844 None:intergenic 40.0%
AGCCAAATGATGTCTTTGCA+AGG + chr7_2:22376934-22376953 Msa1053080:CDS 40.0%
CACCTTGCAAAGACATCATT+TGG - chr7_2:22376825-22376844 None:intergenic 40.0%
CATGAGCTATGGAACAAGTT+TGG + chr7_2:22376980-22376999 Msa1053080:CDS 40.0%
AGCTAAGAGCTCATAAGATC+AGG - chr7_2:22377050-22377069 None:intergenic 40.0%
TTCTGTTCATGTGTGTGTCA+TGG + chr7_2:22377174-22377193 Msa1053080:intron 40.0%
TCATGTGTGTGTCATGGATA+AGG + chr7_2:22377180-22377199 Msa1053080:intron 40.0%
ATCTTGATGAAGACTTGGAG+AGG + chr7_2:22377384-22377403 Msa1053080:CDS 40.0%
GAGGCTATGAAGGAAAACAA+AGG + chr7_2:22377416-22377435 Msa1053080:CDS 40.0%
TTAAGCGCCCAAACCAAATT+CGG - chr7_2:22377673-22377692 None:intergenic 40.0%
!! ATTTGGTTTGGGCGCTTAAA+AGG + chr7_2:22377674-22377693 Msa1053080:three_prime_UTR 40.0%
! GGGCGCTTAAAAGGTATATT+TGG + chr7_2:22377683-22377702 Msa1053080:three_prime_UTR 40.0%
TGAGAGTGAGAAATGGAGTA+CGG - chr7_2:22373810-22373829 None:intergenic 40.0%
AAGTACCTGAGAGTGAGAAA+TGG - chr7_2:22373817-22373836 None:intergenic 40.0%
AGTCCTTGAGCTAAGTAACT+TGG + chr7_2:22374874-22374893 Msa1053080:intron 40.0%
AAGCCAAGTTACTTAGCTCA+AGG - chr7_2:22374880-22374899 None:intergenic 40.0%
AACGCCATAAAACCAAAGAC+TGG - chr7_2:22374991-22375010 None:intergenic 40.0%
CTAGCTCATCATGTAAAACG+TGG + chr7_2:22375012-22375031 Msa1053080:intron 40.0%
! CTTTTGTGAGCGTACACTAT+CGG + chr7_2:22375277-22375296 Msa1053080:intron 40.0%
TAAGGACAATCCACATACTC+TGG + chr7_2:22375892-22375911 Msa1053080:intron 40.0%
! TGTTGATGCTTGCTACTGTT+TGG + chr7_2:22376229-22376248 Msa1053080:CDS 40.0%
ATGACAACCCCATATCAATC+TGG + chr7_2:22376278-22376297 Msa1053080:intron 40.0%
!! TAGGGGTGAATTTGGTGTTT+GGG - chr7_2:22376409-22376428 None:intergenic 40.0%
ATTAGTGGTAGGGGTGAATT+TGG - chr7_2:22376417-22376436 None:intergenic 40.0%
TCAATTGGGCGTAACATTAG+TGG - chr7_2:22376432-22376451 None:intergenic 40.0%
CAGCAGAAGTTGTCTTTACA+AGG + chr7_2:22376661-22376680 Msa1053080:CDS 40.0%
! AGTAAGCTACTTTGTCCAAG+AGG - chr7_2:22376795-22376814 None:intergenic 40.0%
CTTGGACAAAGTAGCTTACT+AGG + chr7_2:22376795-22376814 Msa1053080:CDS 40.0%
CACCTTGCAAAGACATCATT+TGG - chr7_2:22376825-22376844 None:intergenic 40.0%
AGCCAAATGATGTCTTTGCA+AGG + chr7_2:22376934-22376953 Msa1053080:CDS 40.0%
CACCTTGCAAAGACATCATT+TGG - chr7_2:22376825-22376844 None:intergenic 40.0%
CATGAGCTATGGAACAAGTT+TGG + chr7_2:22376980-22376999 Msa1053080:CDS 40.0%
AGCTAAGAGCTCATAAGATC+AGG - chr7_2:22377050-22377069 None:intergenic 40.0%
TTCTGTTCATGTGTGTGTCA+TGG + chr7_2:22377174-22377193 Msa1053080:intron 40.0%
TCATGTGTGTGTCATGGATA+AGG + chr7_2:22377180-22377199 Msa1053080:intron 40.0%
ATCTTGATGAAGACTTGGAG+AGG + chr7_2:22377384-22377403 Msa1053080:CDS 40.0%
GAGGCTATGAAGGAAAACAA+AGG + chr7_2:22377416-22377435 Msa1053080:CDS 40.0%
TTAAGCGCCCAAACCAAATT+CGG - chr7_2:22377673-22377692 None:intergenic 40.0%
!! ATTTGGTTTGGGCGCTTAAA+AGG + chr7_2:22377674-22377693 Msa1053080:three_prime_UTR 40.0%
! GGGCGCTTAAAAGGTATATT+TGG + chr7_2:22377683-22377702 Msa1053080:three_prime_UTR 40.0%
TTTCGTCGAGTGACATGTCT+AGG - chr7_2:22373710-22373729 None:intergenic 45.0%
GTACTCCATTTCTCACTCTC+AGG + chr7_2:22373809-22373828 Msa1053080:CDS 45.0%
TTTGTGTCTGGTGTCTGTGT+GGG - chr7_2:22374167-22374186 None:intergenic 45.0%
CAGACACAAACACACTGAGA+CGG + chr7_2:22374177-22374196 Msa1053080:intron 45.0%
!! CAGAAGTGTCAGTGCTACAA+AGG + chr7_2:22374262-22374281 Msa1053080:intron 45.0%
GCACAGACACTTCTGATTGA+AGG + chr7_2:22374365-22374384 Msa1053080:intron 45.0%
ATGTGTCAATGTCATGTCGG+TGG - chr7_2:22374417-22374436 None:intergenic 45.0%
AGTAGTAGTACATCAGGGCA+TGG + chr7_2:22375084-22375103 Msa1053080:intron 45.0%
GTCAATGTCCATGTCGTGTT+TGG + chr7_2:22375309-22375328 Msa1053080:intron 45.0%
AGTGTACGCTCACAAAAGCT+TGG - chr7_2:22375275-22375294 None:intergenic 45.0%
!! GTAGGGGTGAATTTGGTGTT+TGG - chr7_2:22376410-22376429 None:intergenic 45.0%
TGGGCGTAACATTAGTGGTA+GGG - chr7_2:22376427-22376446 None:intergenic 45.0%
TTGGGCGTAACATTAGTGGT+AGG - chr7_2:22376428-22376447 None:intergenic 45.0%
!! GTTCTGAAAAGAAAGGGGTG+AGG - chr7_2:22376482-22376501 None:intergenic 45.0%
TGTCTTTACAAGGCAGTCTG+AGG + chr7_2:22376671-22376690 Msa1053080:CDS 45.0%
!! TGAGCTTGTTGGAGCAAGTT+TGG + chr7_2:22376752-22376771 Msa1053080:CDS 45.0%
AGGTGCAAAATTCCAAGTCC+TGG + chr7_2:22376840-22376859 Msa1053080:CDS 45.0%
AGTAAGCTACTTCGACCAAG+AGG - chr7_2:22376909-22376928 None:intergenic 45.0%
TCTTGGTCGAAGTAGCTTAC+TGG + chr7_2:22376908-22376927 Msa1053080:CDS 45.0%
CTTGGTCGAAGTAGCTTACT+GGG + chr7_2:22376909-22376928 Msa1053080:CDS 45.0%
TAGCTCATGAAACCAGGAGT+CGG - chr7_2:22376969-22376988 None:intergenic 45.0%
ACTCCTGGTTTCATGAGCTA+TGG + chr7_2:22376969-22376988 Msa1053080:CDS 45.0%
GTTCCATAGCTCATGAAACC+AGG - chr7_2:22376975-22376994 None:intergenic 45.0%
! AATAGCTCTGCACCAACACA+TGG + chr7_2:22377293-22377312 Msa1053080:CDS 45.0%
CTTGGAAGATAGCCATGTGT+TGG - chr7_2:22377308-22377327 None:intergenic 45.0%
TGGCTATCTTCCAAGAAAGC+AGG + chr7_2:22377313-22377332 Msa1053080:CDS 45.0%
!! GGCGTTTTGCTTTTCGTGTA+TGG - chr7_2:22377340-22377359 None:intergenic 45.0%
AGCAAAACGCCAGATTCCAA+CGG + chr7_2:22377349-22377368 Msa1053080:CDS 45.0%
TTTCGTCGAGTGACATGTCT+AGG - chr7_2:22373710-22373729 None:intergenic 45.0%
GTACTCCATTTCTCACTCTC+AGG + chr7_2:22373809-22373828 Msa1053080:CDS 45.0%
TTTGTGTCTGGTGTCTGTGT+GGG - chr7_2:22374167-22374186 None:intergenic 45.0%
CAGACACAAACACACTGAGA+CGG + chr7_2:22374177-22374196 Msa1053080:intron 45.0%
!! CAGAAGTGTCAGTGCTACAA+AGG + chr7_2:22374262-22374281 Msa1053080:intron 45.0%
GCACAGACACTTCTGATTGA+AGG + chr7_2:22374365-22374384 Msa1053080:intron 45.0%
ATGTGTCAATGTCATGTCGG+TGG - chr7_2:22374417-22374436 None:intergenic 45.0%
AGTAGTAGTACATCAGGGCA+TGG + chr7_2:22375084-22375103 Msa1053080:intron 45.0%
GTCAATGTCCATGTCGTGTT+TGG + chr7_2:22375309-22375328 Msa1053080:intron 45.0%
AGTGTACGCTCACAAAAGCT+TGG - chr7_2:22375275-22375294 None:intergenic 45.0%
!! GTAGGGGTGAATTTGGTGTT+TGG - chr7_2:22376410-22376429 None:intergenic 45.0%
TGGGCGTAACATTAGTGGTA+GGG - chr7_2:22376427-22376446 None:intergenic 45.0%
TTGGGCGTAACATTAGTGGT+AGG - chr7_2:22376428-22376447 None:intergenic 45.0%
!! GTTCTGAAAAGAAAGGGGTG+AGG - chr7_2:22376482-22376501 None:intergenic 45.0%
TGTCTTTACAAGGCAGTCTG+AGG + chr7_2:22376671-22376690 Msa1053080:CDS 45.0%
!! TGAGCTTGTTGGAGCAAGTT+TGG + chr7_2:22376752-22376771 Msa1053080:CDS 45.0%
AGGTGCAAAATTCCAAGTCC+TGG + chr7_2:22376840-22376859 Msa1053080:CDS 45.0%
AGTAAGCTACTTCGACCAAG+AGG - chr7_2:22376909-22376928 None:intergenic 45.0%
TCTTGGTCGAAGTAGCTTAC+TGG + chr7_2:22376908-22376927 Msa1053080:CDS 45.0%
CTTGGTCGAAGTAGCTTACT+GGG + chr7_2:22376909-22376928 Msa1053080:CDS 45.0%
TAGCTCATGAAACCAGGAGT+CGG - chr7_2:22376969-22376988 None:intergenic 45.0%
ACTCCTGGTTTCATGAGCTA+TGG + chr7_2:22376969-22376988 Msa1053080:CDS 45.0%
GTTCCATAGCTCATGAAACC+AGG - chr7_2:22376975-22376994 None:intergenic 45.0%
! AATAGCTCTGCACCAACACA+TGG + chr7_2:22377293-22377312 Msa1053080:CDS 45.0%
CTTGGAAGATAGCCATGTGT+TGG - chr7_2:22377308-22377327 None:intergenic 45.0%
TGGCTATCTTCCAAGAAAGC+AGG + chr7_2:22377313-22377332 Msa1053080:CDS 45.0%
!! GGCGTTTTGCTTTTCGTGTA+TGG - chr7_2:22377340-22377359 None:intergenic 45.0%
AGCAAAACGCCAGATTCCAA+CGG + chr7_2:22377349-22377368 Msa1053080:CDS 45.0%
GGAGAACGGGAGTAAGAGTA+GGG - chr7_2:22373670-22373689 None:intergenic 50.0%
AGGAGAACGGGAGTAAGAGT+AGG - chr7_2:22373671-22373690 None:intergenic 50.0%
!! CTGGCATTTTGGAGGAGAAC+GGG - chr7_2:22373683-22373702 None:intergenic 50.0%
!! GCTGGCATTTTGGAGGAGAA+CGG - chr7_2:22373684-22373703 None:intergenic 50.0%
TTCTCCTCCAAAATGCCAGC+CGG + chr7_2:22373684-22373703 Msa1053080:exon 50.0%
GTTTGTGTCTGGTGTCTGTG+TGG - chr7_2:22374168-22374187 None:intergenic 50.0%
CGTCTCAGTGTGTTTGTGTC+TGG - chr7_2:22374179-22374198 None:intergenic 50.0%
TGTCAATGTCATGTCGGTGG+CGG - chr7_2:22374414-22374433 None:intergenic 50.0%
GTCAGTGTCCATGTCGTGTA+TGG + chr7_2:22374506-22374525 Msa1053080:intron 50.0%
ACTTACCTATTGCGCCGCTA+TGG + chr7_2:22374625-22374644 Msa1053080:intron 50.0%
GCTCACAAAAGCTTGACAGC+AGG - chr7_2:22375268-22375287 None:intergenic 50.0%
CATGGACACCAAACACGACA+TGG - chr7_2:22375320-22375339 None:intergenic 50.0%
AGTAGTAGTACATCAGGGCG+TGG + chr7_2:22375813-22375832 Msa1053080:intron 50.0%
GGGCGTAACATTAGTGGTAG+GGG - chr7_2:22376426-22376445 None:intergenic 50.0%
ACAGCTGTTGTTCTCGGAAG+AGG + chr7_2:22376584-22376603 Msa1053080:intron 50.0%
CAGCTGTTGTTCTCGGAAGA+GGG + chr7_2:22376585-22376604 Msa1053080:intron 50.0%
! AGGCTTTAGCAGCTCTCAAG+AGG + chr7_2:22376691-22376710 Msa1053080:CDS 50.0%
GAGCTCATAAGACCAGGACT+TGG - chr7_2:22376855-22376874 None:intergenic 50.0%
!! AGTCCTGGTCTTATGAGCTC+TGG + chr7_2:22376855-22376874 Msa1053080:CDS 50.0%
GTTCCAGAGCTCATAAGACC+AGG - chr7_2:22376861-22376880 None:intergenic 50.0%
ACTCCTGCTGATATGCCTCT+TGG + chr7_2:22376891-22376910 Msa1053080:CDS 50.0%
AGGTGTCAAATTCCGACTCC+TGG + chr7_2:22376954-22376973 Msa1053080:CDS 50.0%
CGTGTATGGTCCTGCTTTCT+TGG - chr7_2:22377326-22377345 None:intergenic 50.0%
AGATCTTTCGCAGACACCGT+TGG - chr7_2:22377368-22377387 None:intergenic 50.0%
GTATCGCTCAGAGGCTATGA+AGG + chr7_2:22377406-22377425 Msa1053080:CDS 50.0%
GGAGAACGGGAGTAAGAGTA+GGG - chr7_2:22373670-22373689 None:intergenic 50.0%
AGGAGAACGGGAGTAAGAGT+AGG - chr7_2:22373671-22373690 None:intergenic 50.0%
!! CTGGCATTTTGGAGGAGAAC+GGG - chr7_2:22373683-22373702 None:intergenic 50.0%
!! GCTGGCATTTTGGAGGAGAA+CGG - chr7_2:22373684-22373703 None:intergenic 50.0%
TTCTCCTCCAAAATGCCAGC+CGG + chr7_2:22373684-22373703 Msa1053080:exon 50.0%
GTTTGTGTCTGGTGTCTGTG+TGG - chr7_2:22374168-22374187 None:intergenic 50.0%
CGTCTCAGTGTGTTTGTGTC+TGG - chr7_2:22374179-22374198 None:intergenic 50.0%
TGTCAATGTCATGTCGGTGG+CGG - chr7_2:22374414-22374433 None:intergenic 50.0%
GTCAGTGTCCATGTCGTGTA+TGG + chr7_2:22374506-22374525 Msa1053080:intron 50.0%
ACTTACCTATTGCGCCGCTA+TGG + chr7_2:22374625-22374644 Msa1053080:intron 50.0%
GCTCACAAAAGCTTGACAGC+AGG - chr7_2:22375268-22375287 None:intergenic 50.0%
CATGGACACCAAACACGACA+TGG - chr7_2:22375320-22375339 None:intergenic 50.0%
AGTAGTAGTACATCAGGGCG+TGG + chr7_2:22375813-22375832 Msa1053080:intron 50.0%
GGGCGTAACATTAGTGGTAG+GGG - chr7_2:22376426-22376445 None:intergenic 50.0%
ACAGCTGTTGTTCTCGGAAG+AGG + chr7_2:22376584-22376603 Msa1053080:intron 50.0%
CAGCTGTTGTTCTCGGAAGA+GGG + chr7_2:22376585-22376604 Msa1053080:intron 50.0%
! AGGCTTTAGCAGCTCTCAAG+AGG + chr7_2:22376691-22376710 Msa1053080:CDS 50.0%
GAGCTCATAAGACCAGGACT+TGG - chr7_2:22376855-22376874 None:intergenic 50.0%
!! AGTCCTGGTCTTATGAGCTC+TGG + chr7_2:22376855-22376874 Msa1053080:CDS 50.0%
GTTCCAGAGCTCATAAGACC+AGG - chr7_2:22376861-22376880 None:intergenic 50.0%
ACTCCTGCTGATATGCCTCT+TGG + chr7_2:22376891-22376910 Msa1053080:CDS 50.0%
AGGTGTCAAATTCCGACTCC+TGG + chr7_2:22376954-22376973 Msa1053080:CDS 50.0%
CGTGTATGGTCCTGCTTTCT+TGG - chr7_2:22377326-22377345 None:intergenic 50.0%
AGATCTTTCGCAGACACCGT+TGG - chr7_2:22377368-22377387 None:intergenic 50.0%
GTATCGCTCAGAGGCTATGA+AGG + chr7_2:22377406-22377425 Msa1053080:CDS 50.0%
GTCGAGTGACATGTCTAGGC+CGG - chr7_2:22373706-22373725 None:intergenic 55.0%
TTGGTCTGTGGTTGGAGGTG+CGG - chr7_2:22373746-22373765 None:intergenic 55.0%
CACGGACACCATACACGACA+TGG - chr7_2:22374517-22374536 None:intergenic 55.0%
AGCATCCATAGCGGCGCAAT+AGG - chr7_2:22374633-22374652 None:intergenic 55.0%
GCTCACAAAAGCTTGGCAGC+AGG - chr7_2:22376008-22376027 None:intergenic 55.0%
GTTCTCGGAAGAGGGTGAGT+TGG + chr7_2:22376593-22376612 Msa1053080:CDS 55.0%
! CGACCAAGAGGCATATCAGC+AGG - chr7_2:22376897-22376916 None:intergenic 55.0%
TCGCAGACACCGTTGGAATC+TGG - chr7_2:22377361-22377380 None:intergenic 55.0%
!! CTTGGAGAGGTATCGCTCAG+AGG + chr7_2:22377397-22377416 Msa1053080:CDS 55.0%
GTCGAGTGACATGTCTAGGC+CGG - chr7_2:22373706-22373725 None:intergenic 55.0%
TTGGTCTGTGGTTGGAGGTG+CGG - chr7_2:22373746-22373765 None:intergenic 55.0%
CACGGACACCATACACGACA+TGG - chr7_2:22374517-22374536 None:intergenic 55.0%
AGCATCCATAGCGGCGCAAT+AGG - chr7_2:22374633-22374652 None:intergenic 55.0%
GCTCACAAAAGCTTGGCAGC+AGG - chr7_2:22376008-22376027 None:intergenic 55.0%
GTTCTCGGAAGAGGGTGAGT+TGG + chr7_2:22376593-22376612 Msa1053080:CDS 55.0%
! CGACCAAGAGGCATATCAGC+AGG - chr7_2:22376897-22376916 None:intergenic 55.0%
TCGCAGACACCGTTGGAATC+TGG - chr7_2:22377361-22377380 None:intergenic 55.0%
!! CTTGGAGAGGTATCGCTCAG+AGG + chr7_2:22377397-22377416 Msa1053080:CDS 55.0%
! TAGGCCGGCTGGCATTTTGG+AGG - chr7_2:22373691-22373710 None:intergenic 60.0%
! GTCTAGGCCGGCTGGCATTT+TGG - chr7_2:22373694-22373713 None:intergenic 60.0%
AGTGACATGTCTAGGCCGGC+TGG - chr7_2:22373702-22373721 None:intergenic 60.0%
!! GCGAGTTGGTCTGTGGTTGG+AGG - chr7_2:22373751-22373770 None:intergenic 60.0%
!! GTGGCGAGTTGGTCTGTGGT+TGG - chr7_2:22373754-22373773 None:intergenic 60.0%
CACAGACCAACTCGCCACCT+CGG + chr7_2:22373756-22373775 Msa1053080:CDS 60.0%
! TTGAGTTGCTGCGAACGCCG+AGG - chr7_2:22373776-22373795 None:intergenic 60.0%
! TAGGCCGGCTGGCATTTTGG+AGG - chr7_2:22373691-22373710 None:intergenic 60.0%
! GTCTAGGCCGGCTGGCATTT+TGG - chr7_2:22373694-22373713 None:intergenic 60.0%
AGTGACATGTCTAGGCCGGC+TGG - chr7_2:22373702-22373721 None:intergenic 60.0%
!! GCGAGTTGGTCTGTGGTTGG+AGG - chr7_2:22373751-22373770 None:intergenic 60.0%
!! GTGGCGAGTTGGTCTGTGGT+TGG - chr7_2:22373754-22373773 None:intergenic 60.0%
CACAGACCAACTCGCCACCT+CGG + chr7_2:22373756-22373775 Msa1053080:CDS 60.0%
! TTGAGTTGCTGCGAACGCCG+AGG - chr7_2:22373776-22373795 None:intergenic 60.0%
! GTCTGTGGTTGGAGGTGCGG+CGG - chr7_2:22373743-22373762 None:intergenic 65.0%
!! CGAGGTGGCGAGTTGGTCTG+TGG - chr7_2:22373758-22373777 None:intergenic 65.0%
AGTTGCTGCGAACGCCGAGG+TGG - chr7_2:22373773-22373792 None:intergenic 65.0%
ACTCCTGCTGCTGCGCCTCT+TGG + chr7_2:22376777-22376796 Msa1053080:CDS 65.0%
! TGTCCAAGAGGCGCAGCAGC+AGG - chr7_2:22376783-22376802 None:intergenic 65.0%
! GTCTGTGGTTGGAGGTGCGG+CGG - chr7_2:22373743-22373762 None:intergenic 65.0%
!! CGAGGTGGCGAGTTGGTCTG+TGG - chr7_2:22373758-22373777 None:intergenic 65.0%
AGTTGCTGCGAACGCCGAGG+TGG - chr7_2:22373773-22373792 None:intergenic 65.0%
ACTCCTGCTGCTGCGCCTCT+TGG + chr7_2:22376777-22376796 Msa1053080:CDS 65.0%
! TGTCCAAGAGGCGCAGCAGC+AGG - chr7_2:22376783-22376802 None:intergenic 65.0%
! GTTGGAGGTGCGGCGGTGAG+TGG - chr7_2:22373736-22373755 None:intergenic 70.0%
CGAACGCCGAGGTGGCGAGT+TGG - chr7_2:22373765-22373784 None:intergenic 70.0%
! GTTGGAGGTGCGGCGGTGAG+TGG - chr7_2:22373736-22373755 None:intergenic 70.0%
CGAACGCCGAGGTGGCGAGT+TGG - chr7_2:22373765-22373784 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 22373625 22377716 22373625 ID=Msa1053080;Name=Msa1053080
chr7_2 mRNA 22373625 22377716 22373625 ID=Msa1053080-mRNA-1;Parent=Msa1053080;Name=Msa1053080-mRNA-1;_AED=0.21;_eAED=0.21;_QI=71|0.5|0.8|0.8|1|1|5|253|329
chr7_2 exon 22373625 22373830 22373625 ID=Msa1053080-mRNA-1:exon:5051;Parent=Msa1053080-mRNA-1
chr7_2 exon 22373915 22374058 22373915 ID=Msa1053080-mRNA-1:exon:5052;Parent=Msa1053080-mRNA-1
chr7_2 exon 22376192 22376254 22376192 ID=Msa1053080-mRNA-1:exon:5053;Parent=Msa1053080-mRNA-1
chr7_2 exon 22376588 22377030 22376588 ID=Msa1053080-mRNA-1:exon:5054;Parent=Msa1053080-mRNA-1
chr7_2 exon 22377259 22377716 22377259 ID=Msa1053080-mRNA-1:exon:5055;Parent=Msa1053080-mRNA-1
chr7_2 five_prime_UTR 22373625 22373695 22373625 ID=Msa1053080-mRNA-1:five_prime_utr;Parent=Msa1053080-mRNA-1
chr7_2 CDS 22373696 22373830 22373696 ID=Msa1053080-mRNA-1:cds;Parent=Msa1053080-mRNA-1
chr7_2 CDS 22373915 22374058 22373915 ID=Msa1053080-mRNA-1:cds;Parent=Msa1053080-mRNA-1
chr7_2 CDS 22376192 22376254 22376192 ID=Msa1053080-mRNA-1:cds;Parent=Msa1053080-mRNA-1
chr7_2 CDS 22376588 22377030 22376588 ID=Msa1053080-mRNA-1:cds;Parent=Msa1053080-mRNA-1
chr7_2 CDS 22377259 22377463 22377259 ID=Msa1053080-mRNA-1:cds;Parent=Msa1053080-mRNA-1
chr7_2 three_prime_UTR 22377464 22377716 22377464 ID=Msa1053080-mRNA-1:three_prime_utr;Parent=Msa1053080-mRNA-1
Gene Sequence

>Msa1053080

ATGCCAGCCGGCCTAGACATGTCACTCGACGAAATCACCACTCACCGCCGCACCTCCAACCACAGACCAACTCGCCACCTCGGCGTTCGCAGCAACTCAATCAGAATCACTCCGTACTCCATTTCTCACTCTCAGATGCTGGAAAGAGAAGCGTTGCGAAGAAGCAGTGTTGATGATGTTCCTCAAGAAATGGTTTTGGATCAACCTCAACCAAAAAATCCTATCACCAAACTCTATTTGTCTAACTTGGATGATAGGGTTTCCAACGAAGACATTCATAACATATCGTTTGTTTTGAAGATATTGGTTCTGAGAATGTTGATGCTTGCTACTGTTTGGCAACTGTTGTTCTCGGAAGAGGGTGAGTTGGAAAGTTACTCCATTCATTATGATCAATTTGGGAGATCAAAAGGAACAGCAGAAGTTGTCTTTACAAGGCAGTCTGAGGCTTTAGCAGCTCTCAAGAGGTACAACAATATGAAGCTTGATGGAAAGACATTGCAAATTGAGCTTGTTGGAGCAAGTTTGGTTACTCCTGCTGCTGCGCCTCTTGGACAAAGTAGCTTACTAGGAAAACCAAATGATGTCTTTGCAAGGTGCAAAATTCCAAGTCCTGGTCTTATGAGCTCTGGAACAAATTTGGTTACTCCTGCTGATATGCCTCTTGGTCGAAGTAGCTTACTGGGAAAGCCAAATGATGTCTTTGCAAGGTGTCAAATTCCGACTCCTGGTTTCATGAGCTATGGAACAAGTTTGGTTACTCGACCAAATGATGTCTTTGTAAGGGAAGAAAGAAAATTTGGAGGTAGCAGGTACAATAATAGCTCTGCACCAACACATGGCTATCTTCCAAGAAAGCAGGACCATACACGAAAAGCAAAACGCCAGATTCCAACGGTGTCTGCGAAAGATCTTGATGAAGACTTGGAGAGGTATCGCTCAGAGGCTATGAAGGAAAACAAAGGAAAAGGAAAGGGAAATCATGATTGA
Protein sequence

>Msa1053080

MPAGLDMSLDEITTHRRTSNHRPTRHLGVRSNSIRITPYSISHSQMLEREALRRSSVDDVPQEMVLDQPQPKNPITKLYLSNLDDRVSNEDIHNISFVLKILVLRMLMLATVWQLLFSEEGELESYSIHYDQFGRSKGTAEVVFTRQSEALAALKRYNNMKLDGKTLQIELVGASLVTPAAAPLGQSSLLGKPNDVFARCKIPSPGLMSSGTNLVTPADMPLGRSSLLGKPNDVFARCQIPTPGFMSYGTSLVTRPNDVFVREERKFGGSRYNNSSAPTHGYLPRKQDHTRKAKRQIPTVSAKDLDEDLERYRSEAMKENKGKGKGNHD*