AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0476280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476280 MtrunA17_Chr3g0135851 98.652 445 6 0 1 445 1 445 0.0 907
Msa0476280 MtrunA17_Chr8g0342551 44.091 440 218 10 1 432 1 420 8.49e-76 243
Msa0476280 MtrunA17_Chr2g0330051 44.548 431 189 13 1 427 1 385 3.84e-73 235
Msa0476280 MtrunA17_Chr4g0025441 47.122 278 124 6 1 268 1 265 4.95e-58 197
Msa0476280 MtrunA17_Chr6g0462191 39.016 305 151 11 89 380 105 387 2.84e-42 154
Msa0476280 MtrunA17_Chr1g0200161 43.503 177 90 4 90 263 140 309 1.35e-37 143
Msa0476280 MtrunA17_Chr8g0346021 44.041 193 80 5 89 265 125 305 1.11e-36 141
Msa0476280 MtrunA17_Chr7g0263731 42.478 226 106 7 50 265 64 275 2.27e-35 136
Msa0476280 MtrunA17_Chr1g0181581 44.503 191 86 6 72 259 103 276 8.30e-35 135
Msa0476280 MtrunA17_Chr2g0283321 35.600 250 122 8 93 332 65 285 1.07e-32 125
Msa0476280 MtrunA17_Chr2g0316401 35.514 214 127 6 58 270 42 245 4.83e-32 124
Msa0476280 MtrunA17_Chr4g0045641 30.114 352 207 12 56 386 112 445 1.77e-30 123
Msa0476280 MtrunA17_Chr4g0020671 31.466 232 131 5 50 276 60 268 1.38e-28 117
Msa0476280 MtrunA17_Chr1g0146931 39.604 202 101 3 86 267 117 317 1.12e-25 109
Msa0476280 MtrunA17_Chr1g0204901 49.524 105 51 1 90 192 135 239 3.63e-24 104
Msa0476280 MtrunA17_Chr7g0273861 29.947 187 108 3 86 268 120 287 2.49e-21 95.9
Msa0476280 MtrunA17_Chr8g0340761 62.162 74 28 0 85 158 120 193 3.75e-21 95.1
Msa0476280 MtrunA17_Chr3g0126901 38.947 190 108 4 91 279 112 294 6.26e-21 94.7
Msa0476280 MtrunA17_Chr8g0371131 40.000 140 74 3 28 159 2 139 9.95e-21 88.2
Msa0476280 MtrunA17_Chr6g0472551 56.098 82 36 0 86 167 112 193 9.17e-20 91.3
Msa0476280 MtrunA17_Chr8g0389781 63.636 66 24 0 90 155 125 190 1.18e-19 90.9
Msa0476280 MtrunA17_Chr2g0330921 36.628 172 89 5 1 159 1 165 1.43e-18 86.7
Msa0476280 MtrunA17_Chr1g0203711 58.571 70 29 0 90 159 114 183 1.55e-18 87.4
Msa0476280 MtrunA17_Chr4g0060381 33.158 190 97 5 74 262 83 243 4.43e-18 86.7
Msa0476280 MtrunA17_Chr4g0057321 33.511 188 99 6 1 180 1 170 1.22e-17 84.7
Msa0476280 MtrunA17_Chr7g0273951 56.716 67 29 0 93 159 108 174 1.60e-17 84.0
Msa0476280 MtrunA17_Chr1g0166431 47.222 108 52 1 90 192 116 223 4.24e-17 83.2
Msa0476280 MtrunA17_Chr5g0416161 36.290 124 63 3 69 191 99 207 5.59e-13 71.2
Msa0476280 MtrunA17_Chr1g0172611 32.847 137 81 2 93 220 107 241 5.96e-13 70.1
Msa0476280 MtrunA17_Chr1g0156121 49.254 67 34 0 91 157 124 190 1.06e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0476280 AT2G26180.1 59.502 442 147 12 1 439 1 413 3.92e-149 431
Msa0476280 AT1G72670.1 45.618 445 189 14 1 436 1 401 1.96e-94 291
Msa0476280 AT1G17480.1 37.277 448 196 14 1 440 1 371 1.66e-65 215
Msa0476280 AT3G22190.3 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0476280 AT3G22190.2 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0476280 AT3G22190.4 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0476280 AT3G22190.1 45.161 279 122 8 1 268 1 259 4.43e-49 173
Msa0476280 AT5G03040.1 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0476280 AT5G03040.3 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0476280 AT5G03040.2 43.627 204 105 4 71 272 94 289 4.07e-41 152
Msa0476280 AT4G00820.1 33.668 398 180 15 89 443 130 486 1.42e-37 144
Msa0476280 AT1G01110.2 31.159 414 228 12 14 385 44 442 2.29e-36 140
Msa0476280 AT3G52290.1 39.674 184 102 2 90 273 107 281 3.91e-35 135
Msa0476280 AT3G15050.1 38.496 226 110 8 91 315 50 247 1.02e-32 125
Msa0476280 AT3G09710.1 38.839 224 108 7 64 269 67 279 1.35e-32 129
Msa0476280 AT3G49260.3 40.513 195 93 4 86 265 115 301 1.94e-32 129
Msa0476280 AT3G49260.1 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0476280 AT3G49260.4 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0476280 AT3G49260.2 40.000 195 93 4 86 265 115 300 2.20e-32 128
Msa0476280 AT3G09710.2 36.709 237 109 8 64 269 67 293 4.05e-31 125
Msa0476280 AT2G33990.1 37.853 177 99 4 90 265 46 212 1.21e-29 116
Msa0476280 AT4G10640.1 31.864 295 154 9 15 278 22 300 4.70e-27 112
Msa0476280 AT2G26410.2 35.028 177 106 4 89 263 146 315 1.84e-25 109
Msa0476280 AT2G26410.1 35.028 177 106 4 89 263 146 315 1.84e-25 109
Msa0476280 AT5G13460.1 31.897 232 120 8 58 284 86 284 6.25e-23 101
Msa0476280 AT2G43680.4 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0476280 AT2G43680.2 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0476280 AT2G43680.3 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0476280 AT2G43680.5 32.402 179 102 5 77 255 311 470 1.15e-21 98.6
Msa0476280 AT2G43680.1 32.402 179 102 5 77 255 312 471 1.25e-21 98.2
Msa0476280 AT4G14750.1 30.802 237 143 7 1 221 1 232 1.98e-21 95.9
Msa0476280 AT4G14750.3 30.802 237 143 7 1 221 60 291 3.71e-21 95.9
Msa0476280 AT4G14750.2 30.802 237 143 7 1 221 60 291 4.44e-21 95.5
Msa0476280 AT3G59690.2 34.641 153 92 4 81 231 160 306 7.97e-21 95.5
Msa0476280 AT3G59690.1 34.641 153 92 4 81 231 160 306 7.97e-21 95.5
Msa0476280 AT1G51960.1 33.173 208 117 7 1 198 1 196 8.00e-19 87.8
Msa0476280 AT4G23060.1 57.333 75 32 0 91 165 167 241 2.02e-18 87.8
Msa0476280 AT3G16490.1 49.451 91 38 2 90 180 106 188 2.86e-18 86.7
Msa0476280 AT1G18840.1 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0476280 AT1G18840.3 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0476280 AT1G18840.2 48.052 77 40 0 88 164 106 182 7.35e-18 86.7
Msa0476280 AT5G07240.1 66.667 63 20 1 90 151 104 166 2.49e-17 84.0
Msa0476280 AT5G07240.2 66.667 63 20 1 90 151 150 212 2.89e-17 84.3
Msa0476280 AT3G51380.1 57.812 64 27 0 89 152 35 98 8.47e-16 73.6
Msa0476280 AT1G14380.6 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0476280 AT1G14380.5 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0476280 AT1G14380.2 35.928 167 90 5 1 157 1 160 1.13e-15 79.7
Msa0476280 AT1G14380.7 35.928 167 90 5 1 157 1 160 1.22e-15 79.7
Msa0476280 AT1G74690.1 39.316 117 66 1 62 178 84 195 1.27e-15 79.7
Msa0476280 AT4G29150.1 61.538 65 25 0 89 153 129 193 1.28e-15 79.0
Msa0476280 AT1G14380.1 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0476280 AT1G14380.3 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0476280 AT1G14380.4 35.928 167 90 5 1 157 1 160 1.32e-15 79.7
Msa0476280 AT5G03960.3 37.956 137 74 2 93 222 110 242 7.04e-15 76.6
Msa0476280 AT5G03960.2 37.956 137 74 2 93 222 110 242 7.04e-15 76.6
Msa0476280 AT5G03960.1 37.956 137 74 2 93 222 109 241 7.33e-15 76.6
Msa0476280 AT1G01110.1 28.125 288 162 9 134 385 1 279 1.28e-14 75.5
Msa0476280 AT5G62070.1 61.667 60 23 0 86 145 112 171 2.21e-14 75.1
Msa0476280 AT3G49380.1 38.235 136 67 4 19 147 41 166 3.23e-14 74.3
Msa0476280 AT1G19870.1 35.938 128 60 3 47 152 149 276 4.33e-13 72.0
Msa0476280 AT1G19870.2 53.226 62 29 0 91 152 32 93 1.89e-12 69.7
Msa0476280 AT2G02790.2 41.892 74 43 0 84 157 100 173 9.81e-11 64.3
Msa0476280 AT2G02790.3 41.892 74 43 0 84 157 100 173 9.81e-11 64.3

Find 166 sgRNAs with CRISPR-Local

Find 233 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGGACGAATTGTCAATTTA+TGG 0.120322 3_3:+80093771 Msa0476280:three_prime_UTR
TCATGGGTGCTTCTGGAAAA+TGG 0.162318 3_3:+80091382 Msa0476280:exon
TTATTTCTAATAGTAATTTA+TGG 0.163021 3_3:+80093968 Msa0476280:three_prime_UTR
TGTTATACAACATGATTATT+TGG 0.179043 3_3:+80093927 Msa0476280:three_prime_UTR
CAACAAGATGTTGAACTTCT+TGG 0.237700 3_3:-80093604 None:intergenic
AACGAGTAGCTTGTCCAATA+TGG 0.247199 3_3:-80093161 None:intergenic
CGGTGAGACCATGGTGAAAA+AGG 0.254663 3_3:+80093532 Msa0476280:exon
AAGGGTTCTGCAAATTTCTT+TGG 0.258449 3_3:-80093057 None:intergenic
GTTTCGGCATTCACCTGATA+TGG 0.260918 3_3:-80094313 Msa0476290:CDS
TGAGTCAGGTTCATGTAATT+TGG 0.262145 3_3:-80093312 None:intergenic
GCAACACTCATGGGTGCTTC+TGG 0.264318 3_3:+80091375 Msa0476280:exon
TCTAAAGGGCTTTCCATATC+AGG 0.269204 3_3:+80094300 Msa0476280:three_prime_UTR
AACCACTTTCCGCGCCTTCT+TGG 0.292272 3_3:+80091770 Msa0476280:CDS
CCATGAGTGTTGCTGAGTTT+TGG 0.299452 3_3:-80091365 None:intergenic
CTTTGTTCATCTCGTGATTC+CGG 0.304293 3_3:-80092924 None:intergenic
CCTTATGCTTTCATACCATT+TGG 0.309982 3_3:-80094420 Msa0476290:CDS
AGCAAGCTGCAGTGACATTA+AGG 0.326388 3_3:+80092206 Msa0476280:CDS
TCTCACCATTAGATGATATA+TGG 0.337909 3_3:+80094060 Msa0476280:three_prime_UTR
CTCAACCTGGAGAGATTATC+TGG 0.341877 3_3:+80093752 Msa0476280:three_prime_UTR
TGGACGAATTGTCAATTTAT+GGG 0.347242 3_3:+80093772 Msa0476280:three_prime_UTR
TGTCTTGTGCATCATAGAAT+TGG 0.353917 3_3:-80093991 None:intergenic
AGCCCTTTAGAACTCGAATA+TGG 0.355019 3_3:-80094288 Msa0476290:CDS
TATACAGAAAATACTTGTTT+CGG 0.356055 3_3:-80094329 Msa0476290:CDS
GCTAAGCCTCCTCCCCATAT+TGG 0.363494 3_3:+80093147 Msa0476280:CDS
AACCAAGGCAAAGCTAAAAT+CGG 0.368576 3_3:+80093338 Msa0476280:CDS
AATTGTTCATTTGTGAGTAT+TGG 0.372492 3_3:+80093724 Msa0476280:three_prime_UTR
TTGCCTTGGTTGATTGAGTC+AGG 0.373865 3_3:-80093326 None:intergenic
GGTGAGATTTATTGATTCAA+TGG 0.373983 3_3:-80094044 None:intergenic
ACATGTTGTTCATCTTTGTC+TGG 0.374417 3_3:-80091432 None:intergenic
AATTTCTTTGGAGGTGGCGG+TGG 0.375706 3_3:-80093045 None:intergenic
GCTTTCATACCATTTGGAAT+TGG 0.378600 3_3:-80094414 Msa0476290:CDS
AGAGAAAGAGAAGGGTTCGT+GGG 0.379570 3_3:-80091236 None:intergenic
CCAAATGGTATGAAAGCATA+AGG 0.390674 3_3:+80094420 Msa0476280:three_prime_UTR
CACCGAGCTCTTGTCCGATT+GGG 0.391424 3_3:-80093514 None:intergenic
TGAGGATTCAAGCACTTGTC+AGG 0.392686 3_3:+80092167 Msa0476280:CDS
CACGAGATGAACAAAGCTAA+TGG 0.399444 3_3:+80092931 Msa0476280:CDS
AGAAGGCGCGGAAAGTGGTT+TGG 0.400404 3_3:-80091767 None:intergenic
ACGAGATGAACAAAGCTAAT+GGG 0.406154 3_3:+80092932 Msa0476280:CDS
CAAGTCCAAGTTCCGAGTTT+CGG 0.408556 3_3:+80093190 Msa0476280:CDS
ACCCTTCAGAAGCTGCTTTG+TGG 0.408756 3_3:-80091635 None:intergenic
GCCTTGGGAGACTAGATTGA+TGG 0.409779 3_3:+80092990 Msa0476280:CDS
GATGGAGTTGGTTGGAAAGA+TGG 0.411885 3_3:+80092956 Msa0476280:CDS
CTAACAAGTCTAAAATCCTT+AGG 0.416040 3_3:-80091720 None:intergenic
TTCCATATTCGAGTTCTAAA+GGG 0.417925 3_3:+80094286 Msa0476280:three_prime_UTR
TGAAAGCTTGATCTCTTGTA+TGG 0.419879 3_3:+80094362 Msa0476280:three_prime_UTR
ATTCCATATTCGAGTTCTAA+AGG 0.422142 3_3:+80094285 Msa0476280:three_prime_UTR
TCGTACCGAAACTCGGAACT+TGG 0.431873 3_3:-80093195 None:intergenic
TCACCGAGCTCTTGTCCGAT+TGG 0.433938 3_3:-80093515 None:intergenic
CATGGGTGCTTCTGGAAAAT+GGG 0.436014 3_3:+80091383 Msa0476280:exon
AAATGGGTCAAAGCATTAAT+CGG 0.439295 3_3:+80091399 Msa0476280:CDS
GAGAGAAAGAGAAGGGTTCG+TGG 0.444055 3_3:-80091237 None:intergenic
CAAATGAACAATTATACAAA+TGG 0.444321 3_3:-80093714 None:intergenic
AAGGGCTTTGAGGGCATTGA+AGG 0.446119 3_3:+80092138 Msa0476280:CDS
ATTTCTTTGGAGGTGGCGGT+GGG 0.446397 3_3:-80093044 None:intergenic
TCACACCATATATCATCTAA+TGG 0.448162 3_3:-80094065 None:intergenic
ACGAGTAGCTTGTCCAATAT+GGG 0.450987 3_3:-80093160 None:intergenic
TTAGACTTGTTAGGCAAGAA+TGG 0.452196 3_3:+80091730 Msa0476280:CDS
AGCTCAAAGGCAACAGTCAA+TGG 0.457003 3_3:+80093383 Msa0476280:CDS
TAGACTTGTTAGGCAAGAAT+GGG 0.462512 3_3:+80091731 Msa0476280:CDS
GGTTCTGCAAATTTCTTTGG+AGG 0.465140 3_3:-80093054 None:intergenic
TGCAGGCAAGAAGGGCTTTG+AGG 0.465225 3_3:+80092128 Msa0476280:intron
TTTGAGATTTCCAGCAATGC+AGG 0.466329 3_3:+80092854 Msa0476280:intron
GATGGATGGCAGCCAAGCCT+TGG 0.468070 3_3:+80092974 Msa0476280:CDS
CATCAGGAGATAACAGTTCA+TGG 0.470128 3_3:+80091592 Msa0476280:CDS
GCAGGCAAGAAGGGCTTTGA+GGG 0.472599 3_3:+80092129 Msa0476280:intron
TCTGCAAATTTCTTTGGAGG+TGG 0.475452 3_3:-80093051 None:intergenic
TTCAAATTCGAGCTTACAAA+GGG 0.481570 3_3:-80093075 None:intergenic
TCGTCGTGTGAGGATGTCTA+TGG 0.489827 3_3:+80092270 Msa0476280:CDS
GAGAAAGAGAAGGGTTCGTG+GGG 0.490414 3_3:-80091235 None:intergenic
ACATCCACAACTCCAATGTC+AGG 0.493112 3_3:+80093246 Msa0476280:CDS
GGTGTGACTTATTCATTCAA+TGG 0.499281 3_3:+80094081 Msa0476280:three_prime_UTR
CTTCAGAAGCTGCTTTGTGG+TGG 0.503461 3_3:-80091632 None:intergenic
CGCGAATTAGTGCTTGAGGT+TGG 0.505381 3_3:-80092877 None:intergenic
TGAGTTTCAATTTATGAAGA+GGG 0.508341 3_3:+80093407 Msa0476280:CDS
GCAAATTTCTTTGGAGGTGG+CGG 0.508534 3_3:-80093048 None:intergenic
AGAGGATGAAATATAAACTT+AGG 0.508574 3_3:-80094162 None:intergenic
TGTTTGAAGGTGAAGGAGGG+TGG 0.510225 3_3:+80091537 Msa0476280:intron
AAGTAGAGAGAGAAAGAGAA+GGG 0.511516 3_3:-80091244 None:intergenic
ATGGATGGCAGCCAAGCCTT+GGG 0.511965 3_3:+80092975 Msa0476280:CDS
AGGTTATGGAGAAGTTCATC+AGG 0.515436 3_3:+80091576 Msa0476280:CDS
GTCCTTGATGTTACTTGTGA+AGG 0.518061 3_3:+80093685 Msa0476280:three_prime_UTR
TGACACCATGCTTGAAGTTG+AGG 0.519275 3_3:+80094259 Msa0476280:three_prime_UTR
AAAATTCAAATGAGGCAAGA+AGG 0.523644 3_3:+80092489 Msa0476280:CDS
TGCATACTCACTTGCTCAGA+AGG 0.524622 3_3:+80092536 Msa0476280:CDS
ACCAAGGCAAAGCTAAAATC+GGG 0.526058 3_3:+80093339 Msa0476280:CDS
TCACAAGTGTTCCCTGACAT+TGG 0.528516 3_3:-80093258 None:intergenic
CCAAAACTCAGCAACACTCA+TGG 0.532255 3_3:+80091365 Msa0476280:exon
GGTTATGAGTGCAGGCAAGA+AGG 0.532390 3_3:+80092119 Msa0476280:intron
CGTTGTTAGAGCTCAACCTA+AGG 0.533918 3_3:+80091704 Msa0476280:CDS
GTTATGAGTGCAGGCAAGAA+GGG 0.535330 3_3:+80092120 Msa0476280:intron
ACTCTCATCGTACCGAAACT+CGG 0.535615 3_3:-80093202 None:intergenic
TTCATTAAGCATATTCTGCA+CGG 0.537002 3_3:-80092302 None:intergenic
TACCAAGAAGGCGCGGAAAG+TGG 0.545045 3_3:-80091772 None:intergenic
ACTTCACCTACCAACCCAAT+CGG 0.545649 3_3:+80093500 Msa0476280:CDS
CAATCTAGTCTCCCAAGGCT+TGG 0.546403 3_3:-80092986 None:intergenic
CACCACAAAGCAGCTTCTGA+AGG 0.550489 3_3:+80091633 Msa0476280:CDS
CAAATGGTATGAAAGCATAA+GGG 0.551950 3_3:+80094421 Msa0476280:three_prime_UTR
GTGTAAGCTTCTGCAGCAGT+TGG 0.555988 3_3:-80091666 None:intergenic
TTCGTCCAGATAATCTCTCC+AGG 0.556575 3_3:-80093757 None:intergenic
GAAGTAGAGAGAGAAAGAGA+AGG 0.558166 3_3:-80091245 None:intergenic
TTTGAGGGCATTGAAGGCAG+TGG 0.558218 3_3:+80092144 Msa0476280:CDS
AGGAGATAACAGTTCATGGA+AGG 0.563394 3_3:+80091596 Msa0476280:CDS
GAAAGAGAAGGGTTCGTGGG+GGG 0.563981 3_3:-80091233 None:intergenic
ACTTATACTTTGAGAGTCAG+AGG 0.565119 3_3:-80094180 None:intergenic
GCTCTAGGACCAATTCCAAA+TGG 0.565328 3_3:+80094405 Msa0476280:three_prime_UTR
TCCTTGATGTTACTTGTGAA+GGG 0.565990 3_3:+80093686 Msa0476280:three_prime_UTR
TTATGTTTGAAGGTGAAGGA+GGG 0.568504 3_3:+80091534 Msa0476280:intron
ATGAGTTTCAATTTATGAAG+AGG 0.569955 3_3:+80093406 Msa0476280:CDS
CGAGATGAACAAAGCTAATG+GGG 0.570107 3_3:+80092933 Msa0476280:CDS
GAGAGTGGAAAATGAGGTGT+TGG 0.571769 3_3:-80092902 None:intergenic
CAAAACTCAGCAACACTCAT+GGG 0.571912 3_3:+80091366 Msa0476280:exon
AGAAAGAGAAGGGTTCGTGG+GGG 0.574053 3_3:-80091234 None:intergenic
GAGCTCTTGTCCGATTGGGT+TGG 0.575108 3_3:-80093510 None:intergenic
AGTATTGGTAATACTCAACC+TGG 0.575609 3_3:+80093739 Msa0476280:three_prime_UTR
GAGTAAGAGCTCGTCGTGTG+AGG 0.575741 3_3:+80092260 Msa0476280:CDS
TTTCAAATTCGAGCTTACAA+AGG 0.575937 3_3:-80093076 None:intergenic
GTTCCCTGACATTGGAGTTG+TGG 0.575976 3_3:-80093250 None:intergenic
CTCGAATTTGAAACCATGCT+CGG 0.576259 3_3:+80093086 Msa0476280:CDS
GCTTGTCCAATATGGGGAGG+AGG 0.576470 3_3:-80093153 None:intergenic
TCTTGTCCGATTGGGTTGGT+AGG 0.578767 3_3:-80093506 None:intergenic
AGTGACATTAAGGTGCATGC+AGG 0.581722 3_3:+80092216 Msa0476280:CDS
AGGATAGTTGTAACAGCACT+AGG 0.582943 3_3:+80093289 Msa0476280:CDS
TCGTGTGAGGATGTCTATGG+AGG 0.584361 3_3:+80092273 Msa0476280:CDS
TTCTGACCAATGCAAGCTCT+AGG 0.584781 3_3:+80094390 Msa0476280:three_prime_UTR
GATTGGGTTGGTAGGTGAAG+TGG 0.587150 3_3:-80093498 None:intergenic
CATCTCGTGATTCCGGAGAG+TGG 0.591885 3_3:-80092917 None:intergenic
GTGTGATAGCATAGGAACAT+TGG 0.592155 3_3:+80092452 Msa0476280:CDS
AATATGGGGAGGAGGCTTAG+CGG 0.592945 3_3:-80093145 None:intergenic
TCCCTTCACAAGTAACATCA+AGG 0.592979 3_3:-80093687 None:intergenic
AACCCAATCGGACAAGAGCT+CGG 0.593120 3_3:+80093512 Msa0476280:CDS
GAGGATTCAAGCACTTGTCA+GGG 0.594722 3_3:+80092168 Msa0476280:CDS
TTTCTTTGGAGGTGGCGGTG+GGG 0.595890 3_3:-80093043 None:intergenic
ATTGGTCCTAGAGCTTGCAT+TGG 0.600573 3_3:-80094396 Msa0476290:CDS
TTTATGTTTGAAGGTGAAGG+AGG 0.601205 3_3:+80091533 Msa0476280:intron
ATGAACAATTATACAAATGG+AGG 0.601507 3_3:-80093711 None:intergenic
ACCACAAAGCAGCTTCTGAA+GGG 0.605684 3_3:+80091634 Msa0476280:CDS
AGGAGCTTTCAAAAGAGAGA+GGG 0.607085 3_3:+80092509 Msa0476280:CDS
GGAGATAACAGTTCATGGAA+GGG 0.611321 3_3:+80091597 Msa0476280:CDS
AGTGCTGTTACAACTATCCT+CGG 0.615531 3_3:-80093286 None:intergenic
GAAGGGTGGTGTGATAGCAT+AGG 0.616172 3_3:+80092444 Msa0476280:CDS
ACAAGAGCTCGGTGAGACCA+TGG 0.619435 3_3:+80093523 Msa0476280:CDS
TCCATCAATCTAGTCTCCCA+AGG 0.620091 3_3:-80092991 None:intergenic
AGAAGCTTACACTGCTGCTG+TGG 0.620813 3_3:+80091677 Msa0476280:CDS
AAGGAGCTTTCAAAAGAGAG+AGG 0.623020 3_3:+80092508 Msa0476280:CDS
GGGCATTGAAGGCAGTGGTG+AGG 0.626128 3_3:+80092149 Msa0476280:CDS
ATAGTCCTCAACTTCAAGCA+TGG 0.629476 3_3:-80094264 Msa0476290:CDS
ATTCCGGAGAGTGGAAAATG+AGG 0.631071 3_3:-80092908 None:intergenic
CGAGTAGCTTGTCCAATATG+GGG 0.633366 3_3:-80093159 None:intergenic
CGTGTGAGGATGTCTATGGA+GGG 0.633588 3_3:+80092274 Msa0476280:CDS
GAGTTGGTTGGAAAGATGGA+TGG 0.634715 3_3:+80092960 Msa0476280:CDS
TGTCAGGGAACACTTGTGAA+AGG 0.634990 3_3:+80093262 Msa0476280:CDS
GGTTCGCGAATTAGTGCTTG+AGG 0.643363 3_3:-80092881 None:intergenic
AAATGTATAACAGAGCTCAA+AGG 0.643845 3_3:+80093370 Msa0476280:CDS
TTGTGAATCTGCAGGAAGGG+TGG 0.652606 3_3:+80092430 Msa0476280:intron
AAAGGGAAATAGCGGCTGGG+TGG 0.656150 3_3:+80093550 Msa0476280:three_prime_UTR
CATCCACAACTCCAATGTCA+GGG 0.657914 3_3:+80093247 Msa0476280:CDS
CTTAGGTTGAGCTCTAACAA+CGG 0.664616 3_3:-80091703 None:intergenic
GAAAGAGAGACACTTGTGCA+TGG 0.671235 3_3:+80094105 Msa0476280:three_prime_UTR
AATTGAATACCAAGAAGGCG+CGG 0.680101 3_3:-80091779 None:intergenic
AGGATTCAAGCACTTGTCAG+GGG 0.684889 3_3:+80092169 Msa0476280:CDS
TTGTCAGGGGTAGACAAGTG+AGG 0.688660 3_3:+80092182 Msa0476280:CDS
GTAGCTTGTCCAATATGGGG+AGG 0.689343 3_3:-80093156 None:intergenic
GAACCTGACTCAATCAACCA+AGG 0.696026 3_3:+80093323 Msa0476280:CDS
AAAAGAACAATGTCACAACA+AGG 0.709510 3_3:+80093118 Msa0476280:CDS
GAGATGAACAAAGCTAATGG+GGG 0.721370 3_3:+80092934 Msa0476280:CDS
GAACACTTGTGAAAGGACCG+AGG 0.744801 3_3:+80093269 Msa0476280:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACTAAAAAAACATTAAAT+GGG - chr3_3:80091935-80091954 None:intergenic 10.0%
!! TAAACTAAAAAAACATTAAA+TGG - chr3_3:80091936-80091955 None:intergenic 10.0%
!! TTAAAAAATAACAAATTTGA+GGG - chr3_3:80092617-80092636 None:intergenic 10.0%
!! ATTAAAAAATAACAAATTTG+AGG - chr3_3:80092618-80092637 None:intergenic 10.0%
!!! TTATTTCTAATAGTAATTTA+TGG + chr3_3:80093968-80093987 Msa0476280:three_prime_UTR 10.0%
!!! AAAAAACAAACTTTTTTTGT+GGG - chr3_3:80091491-80091510 None:intergenic 15.0%
!!! AAAAAAACAAACTTTTTTTG+TGG - chr3_3:80091492-80091511 None:intergenic 15.0%
!!! AATGTTTTTTTAGTTTAGAT+TGG + chr3_3:80091939-80091958 Msa0476280:intron 15.0%
!! TTAAATCAAAAATTCAAATG+AGG + chr3_3:80092481-80092500 Msa0476280:CDS 15.0%
!! ACAAAATAAAATGAAAAACA+TGG - chr3_3:80093816-80093835 None:intergenic 15.0%
!!! AAGTATAAGTACAATTTTAA+CGG + chr3_3:80094193-80094212 Msa0476280:three_prime_UTR 15.0%
!! AAAATAAATAGTCATCAAAG+AGG - chr3_3:80091856-80091875 None:intergenic 20.0%
!!! TAGTTTAGATTGGAAAATTT+TGG + chr3_3:80091949-80091968 Msa0476280:intron 20.0%
!! ACTAAATTGAACAATTTGAA+AGG - chr3_3:80092650-80092669 None:intergenic 20.0%
!!! ATAATTTGAAATTTCGTTAG+AGG + chr3_3:80092703-80092722 Msa0476280:intron 20.0%
!! CAAATGAACAATTATACAAA+TGG - chr3_3:80093717-80093736 None:intergenic 20.0%
!! TGTTATACAACATGATTATT+TGG + chr3_3:80093927-80093946 Msa0476280:three_prime_UTR 20.0%
!! TATACAGAAAATACTTGTTT+CGG - chr3_3:80094332-80094351 Msa0476290:CDS 20.0%
!! TATGTTTGGTTTATGTTTGA+AGG + chr3_3:80091524-80091543 Msa0476280:intron 25.0%
! AAAGTAAAAAATGGAGGTTA+TGG + chr3_3:80091562-80091581 Msa0476280:CDS 25.0%
! GAAAAAATTGAATACCAAGA+AGG - chr3_3:80091787-80091806 None:intergenic 25.0%
!!! AAAATAAAAGCTTGAGTTGA+AGG - chr3_3:80091812-80091831 None:intergenic 25.0%
!! TTTGGACATTCATCTATTTT+AGG + chr3_3:80091967-80091986 Msa0476280:intron 25.0%
!! TTGGACATTCATCTATTTTA+GGG + chr3_3:80091968-80091987 Msa0476280:intron 25.0%
! TAGTGTATTGAACTATTTGT+TGG + chr3_3:80092068-80092087 Msa0476280:intron 25.0%
!!! ATTTTATTTTGTGAATCTGC+AGG + chr3_3:80092422-80092441 Msa0476280:intron 25.0%
!! GTCTATGAATTTTCAAATCA+TGG + chr3_3:80092680-80092699 Msa0476280:intron 25.0%
! TATTAGTTCCTAAAGTTGTA+GGG - chr3_3:80092744-80092763 None:intergenic 25.0%
! TTATTAGTTCCTAAAGTTGT+AGG - chr3_3:80092745-80092764 None:intergenic 25.0%
! GTTTATTCATTCAAACATAG+TGG + chr3_3:80092768-80092787 Msa0476280:intron 25.0%
! GAAAGGAAAGAAAAAGAAAA+AGG - chr3_3:80092813-80092832 None:intergenic 25.0%
! ATGAGTTTCAATTTATGAAG+AGG + chr3_3:80093406-80093425 Msa0476280:CDS 25.0%
! TGAGTTTCAATTTATGAAGA+GGG + chr3_3:80093407-80093426 Msa0476280:CDS 25.0%
! ATGAACAATTATACAAATGG+AGG - chr3_3:80093714-80093733 None:intergenic 25.0%
! AATTGTTCATTTGTGAGTAT+TGG + chr3_3:80093724-80093743 Msa0476280:three_prime_UTR 25.0%
!!! TTTTATTTTGTGAGTGTTCA+TGG + chr3_3:80093825-80093844 Msa0476280:three_prime_UTR 25.0%
! AGAGGATGAAATATAAACTT+AGG - chr3_3:80094165-80094184 None:intergenic 25.0%
! AAATGGGTCAAAGCATTAAT+CGG + chr3_3:80091399-80091418 Msa0476280:CDS 30.0%
! TTGTTGTTGTTGACTATGTT+TGG + chr3_3:80091510-80091529 Msa0476280:intron 30.0%
AGGGTGGTAAAAGTAAAAAA+TGG + chr3_3:80091553-80091572 Msa0476280:CDS 30.0%
GTGGTAAAAGTAAAAAATGG+AGG + chr3_3:80091556-80091575 Msa0476280:CDS 30.0%
! CTAACAAGTCTAAAATCCTT+AGG - chr3_3:80091723-80091742 None:intergenic 30.0%
!! CTAAGGATTTTAGACTTGTT+AGG + chr3_3:80091721-80091740 Msa0476280:CDS 30.0%
! GTATTGAACTATTTGTTGGA+AGG + chr3_3:80092072-80092091 Msa0476280:intron 30.0%
TGTGTTTGTAATGAATGTGA+GGG + chr3_3:80092098-80092117 Msa0476280:intron 30.0%
TTCATTAAGCATATTCTGCA+CGG - chr3_3:80092305-80092324 None:intergenic 30.0%
AAAATTCAAATGAGGCAAGA+AGG + chr3_3:80092489-80092508 Msa0476280:CDS 30.0%
AGGAAAGAAAAAGAAAAAGG+TGG - chr3_3:80092810-80092829 None:intergenic 30.0%
AAGCATCTTTCTTTGTAGAA+AGG - chr3_3:80092830-80092849 None:intergenic 30.0%
TTCAAATTCGAGCTTACAAA+GGG - chr3_3:80093078-80093097 None:intergenic 30.0%
TTTCAAATTCGAGCTTACAA+AGG - chr3_3:80093079-80093098 None:intergenic 30.0%
AAAAGAACAATGTCACAACA+AGG + chr3_3:80093118-80093137 Msa0476280:CDS 30.0%
AAATGTATAACAGAGCTCAA+AGG + chr3_3:80093370-80093389 Msa0476280:CDS 30.0%
! ATCATTCACTCAACTTTTCT+AGG + chr3_3:80093475-80093494 Msa0476280:CDS 30.0%
TGGACGAATTGTCAATTTAT+GGG + chr3_3:80093772-80093791 Msa0476280:three_prime_UTR 30.0%
TTGATTCAATGGCAAAAACT+AGG - chr3_3:80094036-80094055 None:intergenic 30.0%
!! GGTGAGATTTATTGATTCAA+TGG - chr3_3:80094047-80094066 None:intergenic 30.0%
TCTCACCATTAGATGATATA+TGG + chr3_3:80094060-80094079 Msa0476280:three_prime_UTR 30.0%
TCACACCATATATCATCTAA+TGG - chr3_3:80094068-80094087 None:intergenic 30.0%
! ATTCCATATTCGAGTTCTAA+AGG + chr3_3:80094285-80094304 Msa0476280:three_prime_UTR 30.0%
!! TTCCATATTCGAGTTCTAAA+GGG + chr3_3:80094286-80094305 Msa0476280:three_prime_UTR 30.0%
! CAAATGGTATGAAAGCATAA+GGG + chr3_3:80094421-80094440 Msa0476280:three_prime_UTR 30.0%
AAGTAGAGAGAGAAAGAGAA+GGG - chr3_3:80091247-80091266 None:intergenic 35.0%
ACATGTTGTTCATCTTTGTC+TGG - chr3_3:80091435-80091454 None:intergenic 35.0%
TGGTTTATGTTTGAAGGTGA+AGG + chr3_3:80091530-80091549 Msa0476280:intron 35.0%
TTTATGTTTGAAGGTGAAGG+AGG + chr3_3:80091533-80091552 Msa0476280:intron 35.0%
TTATGTTTGAAGGTGAAGGA+GGG + chr3_3:80091534-80091553 Msa0476280:intron 35.0%
!! TTAGACTTGTTAGGCAAGAA+TGG + chr3_3:80091730-80091749 Msa0476280:CDS 35.0%
!! TAGACTTGTTAGGCAAGAAT+GGG + chr3_3:80091731-80091750 Msa0476280:CDS 35.0%
CTGTGTTTGTAATGAATGTG+AGG + chr3_3:80092097-80092116 Msa0476280:intron 35.0%
! CAGCAAACTTGAACTTTTGA+AGG + chr3_3:80092330-80092349 Msa0476280:CDS 35.0%
TATGTGTTGTGAATTGACAG+TGG + chr3_3:80092362-80092381 Msa0476280:intron 35.0%
! TATTTTGTGAATCTGCAGGA+AGG + chr3_3:80092426-80092445 Msa0476280:intron 35.0%
! ATTTTGTGAATCTGCAGGAA+GGG + chr3_3:80092427-80092446 Msa0476280:intron 35.0%
! TTAAGTTGCCCTACAACTTT+AGG + chr3_3:80092733-80092752 Msa0476280:intron 35.0%
ACGAGATGAACAAAGCTAAT+GGG + chr3_3:80092932-80092951 Msa0476280:CDS 35.0%
AAGGGTTCTGCAAATTTCTT+TGG - chr3_3:80093060-80093079 None:intergenic 35.0%
TGAGTCAGGTTCATGTAATT+TGG - chr3_3:80093315-80093334 None:intergenic 35.0%
AACCAAGGCAAAGCTAAAAT+CGG + chr3_3:80093338-80093357 Msa0476280:CDS 35.0%
!!! TATGCTTTTAGAATCTCCGT+TGG - chr3_3:80093445-80093464 None:intergenic 35.0%
ATGGTGAAAAAGGGAAATAG+CGG + chr3_3:80093542-80093561 Msa0476280:exon 35.0%
CAACAAGATGTTGAACTTCT+TGG - chr3_3:80093607-80093626 None:intergenic 35.0%
! TCCTTGATGTTACTTGTGAA+GGG + chr3_3:80093686-80093705 Msa0476280:three_prime_UTR 35.0%
!! AGTATTGGTAATACTCAACC+TGG + chr3_3:80093739-80093758 Msa0476280:three_prime_UTR 35.0%
CTGGACGAATTGTCAATTTA+TGG + chr3_3:80093771-80093790 Msa0476280:three_prime_UTR 35.0%
TGTCTTGTGCATCATAGAAT+TGG - chr3_3:80093994-80094013 None:intergenic 35.0%
GGTGTGACTTATTCATTCAA+TGG + chr3_3:80094081-80094100 Msa0476280:three_prime_UTR 35.0%
! ACTTATACTTTGAGAGTCAG+AGG - chr3_3:80094183-80094202 None:intergenic 35.0%
TGAAAGCTTGATCTCTTGTA+TGG + chr3_3:80094362-80094381 Msa0476280:three_prime_UTR 35.0%
! GCTTTCATACCATTTGGAAT+TGG - chr3_3:80094417-80094436 Msa0476290:CDS 35.0%
CCTTATGCTTTCATACCATT+TGG - chr3_3:80094423-80094442 Msa0476290:CDS 35.0%
! CCAAATGGTATGAAAGCATA+AGG + chr3_3:80094420-80094439 Msa0476280:three_prime_UTR 35.0%
GAAGTAGAGAGAGAAAGAGA+AGG - chr3_3:80091248-80091267 None:intergenic 40.0%
CAAAACTCAGCAACACTCAT+GGG + chr3_3:80091366-80091385 Msa0476280:exon 40.0%
AGGTTATGGAGAAGTTCATC+AGG + chr3_3:80091576-80091595 Msa0476280:CDS 40.0%
CATCAGGAGATAACAGTTCA+TGG + chr3_3:80091592-80091611 Msa0476280:CDS 40.0%
AGGAGATAACAGTTCATGGA+AGG + chr3_3:80091596-80091615 Msa0476280:CDS 40.0%
GGAGATAACAGTTCATGGAA+GGG + chr3_3:80091597-80091616 Msa0476280:CDS 40.0%
!! CTTAGGTTGAGCTCTAACAA+CGG - chr3_3:80091706-80091725 None:intergenic 40.0%
AATTGAATACCAAGAAGGCG+CGG - chr3_3:80091782-80091801 None:intergenic 40.0%
!! TGAACTTTTGAAGGAAGCAG+AGG + chr3_3:80092339-80092358 Msa0476280:CDS 40.0%
GTGTGATAGCATAGGAACAT+TGG + chr3_3:80092452-80092471 Msa0476280:CDS 40.0%
AAGGAGCTTTCAAAAGAGAG+AGG + chr3_3:80092508-80092527 Msa0476280:CDS 40.0%
AGGAGCTTTCAAAAGAGAGA+GGG + chr3_3:80092509-80092528 Msa0476280:CDS 40.0%
! TTTGAGATTTCCAGCAATGC+AGG + chr3_3:80092854-80092873 Msa0476280:intron 40.0%
CTTTGTTCATCTCGTGATTC+CGG - chr3_3:80092927-80092946 None:intergenic 40.0%
CACGAGATGAACAAAGCTAA+TGG + chr3_3:80092931-80092950 Msa0476280:CDS 40.0%
CGAGATGAACAAAGCTAATG+GGG + chr3_3:80092933-80092952 Msa0476280:CDS 40.0%
GAGATGAACAAAGCTAATGG+GGG + chr3_3:80092934-80092953 Msa0476280:CDS 40.0%
!!! TGGGGTTTTTTCTAAGCTCT+CGG - chr3_3:80093028-80093047 None:intergenic 40.0%
! TCTGCAAATTTCTTTGGAGG+TGG - chr3_3:80093054-80093073 None:intergenic 40.0%
GGTTCTGCAAATTTCTTTGG+AGG - chr3_3:80093057-80093076 None:intergenic 40.0%
! CTCGAATTTGAAACCATGCT+CGG + chr3_3:80093086-80093105 Msa0476280:CDS 40.0%
!!! TTTTTGACTTTGACCGAGCA+TGG - chr3_3:80093102-80093121 None:intergenic 40.0%
! ACGAGTAGCTTGTCCAATAT+GGG - chr3_3:80093163-80093182 None:intergenic 40.0%
! AACGAGTAGCTTGTCCAATA+TGG - chr3_3:80093164-80093183 None:intergenic 40.0%
! AGTGCTGTTACAACTATCCT+CGG - chr3_3:80093289-80093308 None:intergenic 40.0%
AGGATAGTTGTAACAGCACT+AGG + chr3_3:80093289-80093308 Msa0476280:CDS 40.0%
ACCAAGGCAAAGCTAAAATC+GGG + chr3_3:80093339-80093358 Msa0476280:CDS 40.0%
!! GCTATTTCCCTTTTTCACCA+TGG - chr3_3:80093543-80093562 None:intergenic 40.0%
! GTCCTTGATGTTACTTGTGA+AGG + chr3_3:80093685-80093704 Msa0476280:three_prime_UTR 40.0%
TCCCTTCACAAGTAACATCA+AGG - chr3_3:80093690-80093709 None:intergenic 40.0%
!!! GTGAGTGTTCATGGTTTTGT+AGG + chr3_3:80093834-80093853 Msa0476280:three_prime_UTR 40.0%
ATAGTCCTCAACTTCAAGCA+TGG - chr3_3:80094267-80094286 Msa0476290:CDS 40.0%
!! AGCCCTTTAGAACTCGAATA+TGG - chr3_3:80094291-80094310 Msa0476290:CDS 40.0%
TCTAAAGGGCTTTCCATATC+AGG + chr3_3:80094300-80094319 Msa0476280:three_prime_UTR 40.0%
AGAGAAAGAGAAGGGTTCGT+GGG - chr3_3:80091239-80091258 None:intergenic 45.0%
AGAGAGAGAGAGAGTGAATG+TGG - chr3_3:80091328-80091347 None:intergenic 45.0%
!! CCATGAGTGTTGCTGAGTTT+TGG - chr3_3:80091368-80091387 None:intergenic 45.0%
CCAAAACTCAGCAACACTCA+TGG + chr3_3:80091365-80091384 Msa0476280:exon 45.0%
! TCATGGGTGCTTCTGGAAAA+TGG + chr3_3:80091382-80091401 Msa0476280:exon 45.0%
! CATGGGTGCTTCTGGAAAAT+GGG + chr3_3:80091383-80091402 Msa0476280:exon 45.0%
ACCACAAAGCAGCTTCTGAA+GGG + chr3_3:80091634-80091653 Msa0476280:CDS 45.0%
CGTTGTTAGAGCTCAACCTA+AGG + chr3_3:80091704-80091723 Msa0476280:CDS 45.0%
AATGTGAGGGTTATGAGTGC+AGG + chr3_3:80092111-80092130 Msa0476280:intron 45.0%
GTTATGAGTGCAGGCAAGAA+GGG + chr3_3:80092120-80092139 Msa0476280:intron 45.0%
TGAGGATTCAAGCACTTGTC+AGG + chr3_3:80092167-80092186 Msa0476280:CDS 45.0%
GAGGATTCAAGCACTTGTCA+GGG + chr3_3:80092168-80092187 Msa0476280:CDS 45.0%
AGGATTCAAGCACTTGTCAG+GGG + chr3_3:80092169-80092188 Msa0476280:CDS 45.0%
AGCAAGCTGCAGTGACATTA+AGG + chr3_3:80092206-80092225 Msa0476280:CDS 45.0%
AGTGACATTAAGGTGCATGC+AGG + chr3_3:80092216-80092235 Msa0476280:CDS 45.0%
TGCATACTCACTTGCTCAGA+AGG + chr3_3:80092536-80092555 Msa0476280:CDS 45.0%
GAGAGTGGAAAATGAGGTGT+TGG - chr3_3:80092905-80092924 None:intergenic 45.0%
! ACACCTCATTTTCCACTCTC+CGG + chr3_3:80092905-80092924 Msa0476280:CDS 45.0%
ATTCCGGAGAGTGGAAAATG+AGG - chr3_3:80092911-80092930 None:intergenic 45.0%
TGAACAAAGCTAATGGGGGA+TGG + chr3_3:80092938-80092957 Msa0476280:CDS 45.0%
! GATGGAGTTGGTTGGAAAGA+TGG + chr3_3:80092956-80092975 Msa0476280:CDS 45.0%
! GAGTTGGTTGGAAAGATGGA+TGG + chr3_3:80092960-80092979 Msa0476280:CDS 45.0%
TCCATCAATCTAGTCTCCCA+AGG - chr3_3:80092994-80093013 None:intergenic 45.0%
! GCAAATTTCTTTGGAGGTGG+CGG - chr3_3:80093051-80093070 None:intergenic 45.0%
! CGAGTAGCTTGTCCAATATG+GGG - chr3_3:80093162-80093181 None:intergenic 45.0%
CAAGTCCAAGTTCCGAGTTT+CGG + chr3_3:80093190-80093209 Msa0476280:CDS 45.0%
ACTCTCATCGTACCGAAACT+CGG - chr3_3:80093205-80093224 None:intergenic 45.0%
ACATCCACAACTCCAATGTC+AGG + chr3_3:80093246-80093265 Msa0476280:CDS 45.0%
CATCCACAACTCCAATGTCA+GGG + chr3_3:80093247-80093266 Msa0476280:CDS 45.0%
TCACAAGTGTTCCCTGACAT+TGG - chr3_3:80093261-80093280 None:intergenic 45.0%
TGTCAGGGAACACTTGTGAA+AGG + chr3_3:80093262-80093281 Msa0476280:CDS 45.0%
GAACCTGACTCAATCAACCA+AGG + chr3_3:80093323-80093342 Msa0476280:CDS 45.0%
TTGCCTTGGTTGATTGAGTC+AGG - chr3_3:80093329-80093348 None:intergenic 45.0%
!!! ACCCGATTTTAGCTTTGCCT+TGG - chr3_3:80093343-80093362 None:intergenic 45.0%
AGCTCAAAGGCAACAGTCAA+TGG + chr3_3:80093383-80093402 Msa0476280:CDS 45.0%
ACTTCACCTACCAACCCAAT+CGG + chr3_3:80093500-80093519 Msa0476280:CDS 45.0%
GGTGAGACCATGGTGAAAAA+GGG + chr3_3:80093533-80093552 Msa0476280:exon 45.0%
TGAAAAAGGGAAATAGCGGC+TGG + chr3_3:80093546-80093565 Msa0476280:exon 45.0%
GAAAAAGGGAAATAGCGGCT+GGG + chr3_3:80093547-80093566 Msa0476280:exon 45.0%
CTCAACCTGGAGAGATTATC+TGG + chr3_3:80093752-80093771 Msa0476280:three_prime_UTR 45.0%
TTCGTCCAGATAATCTCTCC+AGG - chr3_3:80093760-80093779 None:intergenic 45.0%
GAAAGAGAGACACTTGTGCA+TGG + chr3_3:80094105-80094124 Msa0476280:three_prime_UTR 45.0%
TGACACCATGCTTGAAGTTG+AGG + chr3_3:80094259-80094278 Msa0476280:three_prime_UTR 45.0%
GTTTCGGCATTCACCTGATA+TGG - chr3_3:80094316-80094335 Msa0476290:CDS 45.0%
TTCTGACCAATGCAAGCTCT+AGG + chr3_3:80094390-80094409 Msa0476280:three_prime_UTR 45.0%
ATTGGTCCTAGAGCTTGCAT+TGG - chr3_3:80094399-80094418 Msa0476290:CDS 45.0%
!! GCTCTAGGACCAATTCCAAA+TGG + chr3_3:80094405-80094424 Msa0476280:three_prime_UTR 45.0%
AGAAAGAGAAGGGTTCGTGG+GGG - chr3_3:80091237-80091256 None:intergenic 50.0%
GAGAAAGAGAAGGGTTCGTG+GGG - chr3_3:80091238-80091257 None:intergenic 50.0%
GAGAGAAAGAGAAGGGTTCG+TGG - chr3_3:80091240-80091259 None:intergenic 50.0%
TGTTTGAAGGTGAAGGAGGG+TGG + chr3_3:80091537-80091556 Msa0476280:intron 50.0%
! CTTCAGAAGCTGCTTTGTGG+TGG - chr3_3:80091635-80091654 None:intergenic 50.0%
CACCACAAAGCAGCTTCTGA+AGG + chr3_3:80091633-80091652 Msa0476280:CDS 50.0%
! ACCCTTCAGAAGCTGCTTTG+TGG - chr3_3:80091638-80091657 None:intergenic 50.0%
GTGTAAGCTTCTGCAGCAGT+TGG - chr3_3:80091669-80091688 None:intergenic 50.0%
AGAAGCTTACACTGCTGCTG+TGG + chr3_3:80091677-80091696 Msa0476280:CDS 50.0%
GGTTATGAGTGCAGGCAAGA+AGG + chr3_3:80092119-80092138 Msa0476280:intron 50.0%
!! AAGGGCTTTGAGGGCATTGA+AGG + chr3_3:80092138-80092157 Msa0476280:CDS 50.0%
!! TTTGAGGGCATTGAAGGCAG+TGG + chr3_3:80092144-80092163 Msa0476280:CDS 50.0%
TTGTCAGGGGTAGACAAGTG+AGG + chr3_3:80092182-80092201 Msa0476280:CDS 50.0%
TCGTCGTGTGAGGATGTCTA+TGG + chr3_3:80092270-80092289 Msa0476280:CDS 50.0%
TCGTGTGAGGATGTCTATGG+AGG + chr3_3:80092273-80092292 Msa0476280:CDS 50.0%
CGTGTGAGGATGTCTATGGA+GGG + chr3_3:80092274-80092293 Msa0476280:CDS 50.0%
TTGTGAATCTGCAGGAAGGG+TGG + chr3_3:80092430-80092449 Msa0476280:intron 50.0%
GAAGGGTGGTGTGATAGCAT+AGG + chr3_3:80092444-80092463 Msa0476280:CDS 50.0%
AGTCTCTTCAGTCCTGAGTG+AGG + chr3_3:80092577-80092596 Msa0476280:intron 50.0%
TAATTGACGACGCCTCACTC+AGG - chr3_3:80092592-80092611 None:intergenic 50.0%
CGCGAATTAGTGCTTGAGGT+TGG - chr3_3:80092880-80092899 None:intergenic 50.0%
GGTTCGCGAATTAGTGCTTG+AGG - chr3_3:80092884-80092903 None:intergenic 50.0%
AAGCTAATGGGGGATGGAGT+TGG + chr3_3:80092944-80092963 Msa0476280:CDS 50.0%
! TAATGGGGGATGGAGTTGGT+TGG + chr3_3:80092948-80092967 Msa0476280:CDS 50.0%
CAATCTAGTCTCCCAAGGCT+TGG - chr3_3:80092989-80093008 None:intergenic 50.0%
GCCTTGGGAGACTAGATTGA+TGG + chr3_3:80092990-80093009 Msa0476280:CDS 50.0%
! ATTTCTTTGGAGGTGGCGGT+GGG - chr3_3:80093047-80093066 None:intergenic 50.0%
! AATTTCTTTGGAGGTGGCGG+TGG - chr3_3:80093048-80093067 None:intergenic 50.0%
AATATGGGGAGGAGGCTTAG+CGG - chr3_3:80093148-80093167 None:intergenic 50.0%
! GTAGCTTGTCCAATATGGGG+AGG - chr3_3:80093159-80093178 None:intergenic 50.0%
TCGTACCGAAACTCGGAACT+TGG - chr3_3:80093198-80093217 None:intergenic 50.0%
GTTCCCTGACATTGGAGTTG+TGG - chr3_3:80093253-80093272 None:intergenic 50.0%
GAACACTTGTGAAAGGACCG+AGG + chr3_3:80093269-80093288 Msa0476280:CDS 50.0%
! AGGGCTGCAGTTTTCTCCAA+CGG + chr3_3:80093426-80093445 Msa0476280:CDS 50.0%
!! GATTGGGTTGGTAGGTGAAG+TGG - chr3_3:80093501-80093520 None:intergenic 50.0%
!! TCTTGTCCGATTGGGTTGGT+AGG - chr3_3:80093509-80093528 None:intergenic 50.0%
AACCCAATCGGACAAGAGCT+CGG + chr3_3:80093512-80093531 Msa0476280:CDS 50.0%
CGGTGAGACCATGGTGAAAA+AGG + chr3_3:80093532-80093551 Msa0476280:exon 50.0%
GAAAGAGAAGGGTTCGTGGG+GGG - chr3_3:80091236-80091255 None:intergenic 55.0%
GCAACACTCATGGGTGCTTC+TGG + chr3_3:80091375-80091394 Msa0476280:exon 55.0%
! AGAAGGCGCGGAAAGTGGTT+TGG - chr3_3:80091770-80091789 None:intergenic 55.0%
AACCACTTTCCGCGCCTTCT+TGG + chr3_3:80091770-80091789 Msa0476280:CDS 55.0%
! TACCAAGAAGGCGCGGAAAG+TGG - chr3_3:80091775-80091794 None:intergenic 55.0%
TGCAGGCAAGAAGGGCTTTG+AGG + chr3_3:80092128-80092147 Msa0476280:intron 55.0%
! GCAGGCAAGAAGGGCTTTGA+GGG + chr3_3:80092129-80092148 Msa0476280:intron 55.0%
GAGTAAGAGCTCGTCGTGTG+AGG + chr3_3:80092260-80092279 Msa0476280:CDS 55.0%
!! TTGAGGTTGGCCTGCATTGC+TGG - chr3_3:80092867-80092886 None:intergenic 55.0%
CATCTCGTGATTCCGGAGAG+TGG - chr3_3:80092920-80092939 None:intergenic 55.0%
ATGGATGGCAGCCAAGCCTT+GGG + chr3_3:80092975-80092994 Msa0476280:CDS 55.0%
! TTTCTTTGGAGGTGGCGGTG+GGG - chr3_3:80093046-80093065 None:intergenic 55.0%
GCTAAGCCTCCTCCCCATAT+TGG + chr3_3:80093147-80093166 Msa0476280:CDS 55.0%
GCTTGTCCAATATGGGGAGG+AGG - chr3_3:80093156-80093175 None:intergenic 55.0%
GAGCTCTTGTCCGATTGGGT+TGG - chr3_3:80093513-80093532 None:intergenic 55.0%
CACCGAGCTCTTGTCCGATT+GGG - chr3_3:80093517-80093536 None:intergenic 55.0%
TCACCGAGCTCTTGTCCGAT+TGG - chr3_3:80093518-80093537 None:intergenic 55.0%
! ACAAGAGCTCGGTGAGACCA+TGG + chr3_3:80093523-80093542 Msa0476280:CDS 55.0%
AAAGGGAAATAGCGGCTGGG+TGG + chr3_3:80093550-80093569 Msa0476280:three_prime_UTR 55.0%
!! GGGCATTGAAGGCAGTGGTG+AGG + chr3_3:80092149-80092168 Msa0476280:CDS 60.0%
GATGGATGGCAGCCAAGCCT+TGG + chr3_3:80092974-80092993 Msa0476280:CDS 60.0%
AGAAGGGTTCGTGGGGGGTG+TGG - chr3_3:80091231-80091250 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 80091222 80094451 80091222 ID=Msa0476280;Name=Msa0476280
chr3_3 mRNA 80091222 80094451 80091222 ID=Msa0476280-mRNA-1;Parent=Msa0476280;Name=Msa0476280-mRNA-1;_AED=0.02;_eAED=0.02;_QI=162|1|1|1|1|1|5|903|445
chr3_3 exon 80091222 80091452 80091222 ID=Msa0476280-mRNA-1:exon:21827;Parent=Msa0476280-mRNA-1
chr3_3 exon 80091546 80091791 80091546 ID=Msa0476280-mRNA-1:exon:21828;Parent=Msa0476280-mRNA-1
chr3_3 exon 80092133 80092360 80092133 ID=Msa0476280-mRNA-1:exon:21829;Parent=Msa0476280-mRNA-1
chr3_3 exon 80092444 80092557 80092444 ID=Msa0476280-mRNA-1:exon:21830;Parent=Msa0476280-mRNA-1
chr3_3 exon 80092868 80094451 80092868 ID=Msa0476280-mRNA-1:exon:21831;Parent=Msa0476280-mRNA-1
chr3_3 five_prime_UTR 80091222 80091383 80091222 ID=Msa0476280-mRNA-1:five_prime_utr;Parent=Msa0476280-mRNA-1
chr3_3 CDS 80091384 80091452 80091384 ID=Msa0476280-mRNA-1:cds;Parent=Msa0476280-mRNA-1
chr3_3 CDS 80091546 80091791 80091546 ID=Msa0476280-mRNA-1:cds;Parent=Msa0476280-mRNA-1
chr3_3 CDS 80092133 80092360 80092133 ID=Msa0476280-mRNA-1:cds;Parent=Msa0476280-mRNA-1
chr3_3 CDS 80092444 80092557 80092444 ID=Msa0476280-mRNA-1:cds;Parent=Msa0476280-mRNA-1
chr3_3 CDS 80092868 80093548 80092868 ID=Msa0476280-mRNA-1:cds;Parent=Msa0476280-mRNA-1
chr3_3 three_prime_UTR 80093549 80094451 80093549 ID=Msa0476280-mRNA-1:three_prime_utr;Parent=Msa0476280-mRNA-1
Gene Sequence

>Msa0476280

ATGGGTGCTTCTGGAAAATGGGTCAAAGCATTAATCGGATTCAAGAAACCAGACAAAGATGAACAACATGTGAAGGAGGGTGGTAAAAGTAAAAAATGGAGGTTATGGAGAAGTTCATCAGGAGATAACAGTTCATGGAAGGGTTTCAAAACAAACCACCACAAAGCAGCTTCTGAAGGGTCTGAATCTCCAACTGCTGCAGAAGCTTACACTGCTGCTGTGGCTACCGTTGTTAGAGCTCAACCTAAGGATTTTAGACTTGTTAGGCAAGAATGGGCTGCTATAAGAATCCAAACCACTTTCCGCGCCTTCTTGGCAAGAAGGGCTTTGAGGGCATTGAAGGCAGTGGTGAGGATTCAAGCACTTGTCAGGGGTAGACAAGTGAGGAAGCAAGCTGCAGTGACATTAAGGTGCATGCAGGCATTAGTTCGTGTTCAAGCTCGAGTAAGAGCTCGTCGTGTGAGGATGTCTATGGAGGGACAAGCCGTGCAGAATATGCTTAATGAACGACGCAGCAAACTTGAACTTTTGAAGGAAGCAGAGGAAGGGTGGTGTGATAGCATAGGAACATTGGAAGATGTTAAATCAAAAATTCAAATGAGGCAAGAAGGAGCTTTCAAAAGAGAGAGGGCACTTGCATACTCACTTGCTCAGAAGCAATGCAGGCCAACCTCAAGCACTAATTCGCGAACCAACACCTCATTTTCCACTCTCCGGAATCACGAGATGAACAAAGCTAATGGGGGATGGAGTTGGTTGGAAAGATGGATGGCAGCCAAGCCTTGGGAGACTAGATTGATGGAACAGTCTCACGCCGAGAGCTTAGAAAAAACCCCACCGCCACCTCCAAAGAAATTTGCAGAACCCTTTGTAAGCTCGAATTTGAAACCATGCTCGGTCAAAGTCAAAAAGAACAATGTCACAACAAGGATTTCCGCTAAGCCTCCTCCCCATATTGGACAAGCTACTCGTTCATCGTCAAGTCCAAGTTCCGAGTTTCGGTACGATGAGAGTTCTGCATCATCTTCTATTTGTACATCCACAACTCCAATGTCAGGGAACACTTGTGAAAGGACCGAGGATAGTTGTAACAGCACTAGGCCAAATTACATGAACCTGACTCAATCAACCAAGGCAAAGCTAAAATCGGGTAGTAATCAAATGTATAACAGAGCTCAAAGGCAACAGTCAATGGATGAGTTTCAATTTATGAAGAGGGCTGCAGTTTTCTCCAACGGAGATTCTAAAAGCATAGCTGCTTCTGATCATTCACTCAACTTTTCTAGGCCACTTCACCTACCAACCCAATCGGACAAGAGCTCGGTGAGACCATGGTGA
Protein sequence

>Msa0476280

MGASGKWVKALIGFKKPDKDEQHVKEGGKSKKWRLWRSSSGDNSSWKGFKTNHHKAASEGSESPTAAEAYTAAVATVVRAQPKDFRLVRQEWAAIRIQTTFRAFLARRALRALKAVVRIQALVRGRQVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQNMLNERRSKLELLKEAEEGWCDSIGTLEDVKSKIQMRQEGAFKRERALAYSLAQKQCRPTSSTNSRTNTSFSTLRNHEMNKANGGWSWLERWMAAKPWETRLMEQSHAESLEKTPPPPPKKFAEPFVSSNLKPCSVKVKKNNVTTRISAKPPPHIGQATRSSSSPSSEFRYDESSASSSICTSTTPMSGNTCERTEDSCNSTRPNYMNLTQSTKAKLKSGSNQMYNRAQRQQSMDEFQFMKRAAVFSNGDSKSIAASDHSLNFSRPLHLPTQSDKSSVRPW*