AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1045140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045140 MtrunA17_Chr2g0313061 94.488 381 20 1 43 422 1 381 0.0 650
Msa1045140 MtrunA17_Chr8g0336501 99.270 137 1 0 286 422 1 137 9.64e-96 283
Msa1045140 MtrunA17_Chr4g0030031 32.353 204 110 6 223 418 434 617 7.24e-15 76.6
Msa1045140 MtrunA17_Chr1g0181611 29.442 197 115 6 236 421 403 586 8.98e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1045140 AT1G17140.1 48.564 383 155 11 43 422 1 344 1.40e-88 273
Msa1045140 AT1G17140.2 48.564 383 155 11 43 422 1 344 1.40e-88 273
Msa1045140 AT1G78430.1 48.825 383 130 11 44 422 4 324 3.97e-84 260
Msa1045140 AT5G60210.5 27.523 327 179 11 108 418 301 585 4.07e-14 74.7
Msa1045140 AT5G60210.3 27.523 327 179 11 108 418 301 585 4.07e-14 74.7
Msa1045140 AT5G60210.2 27.523 327 179 11 108 418 277 561 9.25e-14 73.6
Msa1045140 AT5G60210.4 27.523 327 179 11 108 418 277 561 9.25e-14 73.6
Msa1045140 AT5G60210.1 27.523 327 179 11 108 418 277 561 9.25e-14 73.6
Msa1045140 AT5G60210.6 27.523 327 179 11 108 418 277 561 9.25e-14 73.6
Msa1045140 AT3G53350.3 25.326 383 192 10 41 346 1 366 1.17e-12 69.7
Msa1045140 AT3G53350.2 25.326 383 192 10 41 346 1 366 1.17e-12 69.7
Msa1045140 AT3G53350.8 24.742 388 200 9 34 346 7 377 1.02e-11 66.6
Msa1045140 AT3G53350.7 25.065 383 195 11 41 346 1 368 1.27e-11 66.2
Msa1045140 AT3G53350.1 25.065 383 195 11 41 346 1 368 1.27e-11 66.2
Msa1045140 AT3G53350.5 25.065 383 195 11 41 346 1 368 1.27e-11 66.2
Msa1045140 AT2G37080.3 39.496 119 60 4 44 155 6 119 3.88e-11 65.5

Find 97 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTAGAATGTTTGGTGATTTA+TGG 0.158925 7_2:-4324538 Msa1045140:CDS
TCCATTGAACCACACCTTTC+AGG 0.188017 7_2:+4324689 None:intergenic
GCTGCAGCTGCAGTGCTTGC+AGG 0.211780 7_2:-4324743 Msa1045140:CDS
CGGGACTCGCATTGCAGATT+TGG 0.237903 7_2:-4325446 Msa1045140:CDS
TTGTTTCTGTTGTATTATAA+TGG 0.269451 7_2:-4324265 Msa1045140:three_prime_UTR
ACATAATAGTACACTCTTAA+TGG 0.283825 7_2:+4324242 None:intergenic
GAAGAAATTGAGTAAAGAAT+TGG 0.311524 7_2:-4324894 Msa1045140:CDS
TCTTCTGGTATTAGAATGTT+TGG 0.317878 7_2:-4324548 Msa1045140:CDS
GATGATCTGGATGATGGTTT+TGG 0.318666 7_2:-4324590 Msa1045140:CDS
GATCGTCGGTCTCCTAGTTT+TGG 0.320194 7_2:+4325514 None:intergenic
TTTAGTACTATTTGCTTTCA+GGG 0.324076 7_2:-4329712 Msa1045140:five_prime_UTR
TCCTGGTATGGTTGATGATC+TGG 0.327726 7_2:-4324603 Msa1045140:CDS
AGTTTGTTCAAGTGTTGTTT+TGG 0.328022 7_2:+4327217 None:intergenic
CAACTTCTCATTCAACTTCT+CGG 0.328807 7_2:+4324853 None:intergenic
TTCTCTGGCTCTGATGTTGC+TGG 0.333734 7_2:+4325103 None:intergenic
AGCGTCGTTGAAATCAAGTT+TGG 0.357678 7_2:-4325041 Msa1045140:CDS
GCAGGTGCAGAAATCACTTT+TGG 0.360469 7_2:+4324504 None:intergenic
TTTGGACTTCGGTCAGTAAC+CGG 0.385141 7_2:+4325532 None:intergenic
GATGTTGCTGGTTGAGTTTG+AGG 0.385163 7_2:+4325115 None:intergenic
TCCTCCACAAAAGGCTTCTC+TGG 0.388495 7_2:+4325088 None:intergenic
AGTAAAAGCTGCTGAAACTA+AGG 0.391486 7_2:-4324939 Msa1045140:CDS
CAGTGAGTTTGGCAGAATTA+CGG 0.395914 7_2:-4324472 Msa1045140:three_prime_UTR
TAACATACATACCTTGATCT+TGG 0.405582 7_2:+4325915 None:intergenic
GCTTGAATTGACAGTGAGTT+TGG 0.411653 7_2:-4324483 Msa1045140:three_prime_UTR
CCCTTCACCTCAGTTGGAAA+AGG 0.423532 7_2:+4324152 None:intergenic
AAGAATTGGAAGCTAGTAAA+GGG 0.424711 7_2:-4324880 Msa1045140:CDS
GAAATCTGTGGAAGAAGAAA+AGG 0.430192 7_2:-4324831 Msa1045140:CDS
TGAAGTTCCTATCGAAAAGT+TGG 0.430569 7_2:-4325176 Msa1045140:CDS
TCCTGAAAGGTGTGGTTCAA+TGG 0.435919 7_2:-4324690 Msa1045140:CDS
TTGATATGAGTGCTGCTGCT+AGG 0.438889 7_2:-4324715 Msa1045140:CDS
CAGCGAGTTCGACAAAATTA+CGG 0.448031 7_2:+4324397 None:intergenic
GCAGCTGCAGTGCTTGCAGG+AGG 0.450210 7_2:-4324740 Msa1045140:CDS
ATAGTTAAAATACTACTCAT+TGG 0.456410 7_2:+4324369 None:intergenic
AAAGAATTGGAAGCTAGTAA+AGG 0.459045 7_2:-4324881 Msa1045140:CDS
CCTTCACCTCAGTTGGAAAA+GGG 0.459069 7_2:+4324153 None:intergenic
GGTGATTTATGGAAGAAGAA+AGG 0.459584 7_2:-4324527 Msa1045140:CDS
CATGGATATGTAGGTTCTCC+TGG 0.462446 7_2:-4324620 Msa1045140:CDS
TAAGAACCCTTCACCTCAGT+TGG 0.468013 7_2:+4324146 None:intergenic
AGTGTCAGCTCCTCCACAAA+AGG 0.476304 7_2:+4325079 None:intergenic
TATGCAAAATATTCTCATCA+AGG 0.483262 7_2:-4329642 Msa1045140:intron
AATCAGAAATGAAGAAGCTA+AGG 0.488261 7_2:-4324799 Msa1045140:CDS
AAAACATGATGTATTTGAAA+AGG 0.489311 7_2:-4325140 Msa1045140:CDS
TGATATGAGTGCTGCTGCTA+GGG 0.490148 7_2:-4324714 Msa1045140:CDS
ATGGATAAGCACTTTGGTGG+TGG 0.495371 7_2:-4324671 Msa1045140:CDS
ACACCAGGTGGAAGGTATCA+TGG 0.495632 7_2:-4324638 Msa1045140:CDS
CATATCAAATGCCAAGATCA+AGG 0.498306 7_2:-4325926 Msa1045140:intron
TCGGATTGAGTACCACCTCT+TGG 0.503758 7_2:+4325490 None:intergenic
CTTCTTCTGATTTACTGTCT+CGG 0.503831 7_2:+4325471 None:intergenic
ATGGTTGATGATCTGGATGA+TGG 0.513817 7_2:-4324596 Msa1045140:CDS
GGAAGGTATCATGGATATGT+AGG 0.515502 7_2:-4324629 Msa1045140:CDS
CATAAATGAGCACTAGCTAC+TGG 0.518520 7_2:-4329899 Msa1045140:five_prime_UTR
GTCGTTGAAATCAAGTTTGG+AGG 0.523652 7_2:-4325038 Msa1045140:CDS
GGAAGTGCAAGAAACTAGAA+AGG 0.524647 7_2:+4329796 None:intergenic
ATATGTAGGTTCTCCTGGTA+TGG 0.532614 7_2:-4324615 Msa1045140:CDS
CAGTAAATCAGAAGAAGCTC+GGG 0.538053 7_2:-4325465 Msa1045140:CDS
GCTGCTGAAACTAAGGAAGA+AGG 0.540708 7_2:-4324932 Msa1045140:CDS
GCAGATTTGGAATCACAGCT+TGG 0.551467 7_2:-4325433 Msa1045140:CDS
ACAGTAAATCAGAAGAAGCT+CGG 0.553824 7_2:-4325466 Msa1045140:CDS
CAAGAGGTACTCATCAGCTT+CGG 0.558421 7_2:-4325594 Msa1045140:CDS
TCAGGTATAATAACATCTTG+AGG 0.560208 7_2:+4325226 None:intergenic
AACTCACTGTCAATTCAAGC+AGG 0.569771 7_2:+4324486 None:intergenic
TCCATCACATCATCATCGAC+CGG 0.578161 7_2:-4325551 Msa1045140:CDS
CTTCACCTCAGTTGGAAAAG+GGG 0.585048 7_2:+4324154 None:intergenic
CGAAGCTGATGAGTACCTCT+TGG 0.586620 7_2:+4325595 None:intergenic
CCTCTTGGTGACTGCCTCTG+AGG 0.586987 7_2:+4325610 None:intergenic
TAAGGAAGAAGGAATGACAA+TGG 0.596676 7_2:-4324921 Msa1045140:CDS
TCCAGATCATCAACCATACC+AGG 0.598846 7_2:+4324602 None:intergenic
CTGCTGCTAGGGTTCCTGAA+AGG 0.600125 7_2:-4324703 Msa1045140:CDS
TCAATGGATAAGCACTTTGG+TGG 0.605990 7_2:-4324674 Msa1045140:CDS
CTGTGGAAGAAGAAAAGGCA+GGG 0.608960 7_2:-4324826 Msa1045140:CDS
TAACTATGGCCATGTTTAGG+TGG 0.611223 7_2:-4324353 Msa1045140:three_prime_UTR
ACCGGTCGATGATGATGTGA+TGG 0.611787 7_2:+4325550 None:intergenic
ATTAAAGCTGTTATGAACTG+TGG 0.611804 7_2:+4329865 None:intergenic
GAAGTGCAAGAAACTAGAAA+GGG 0.614821 7_2:+4329797 None:intergenic
TTAAAGCTGTTATGAACTGT+GGG 0.615265 7_2:+4329866 None:intergenic
TACCACCTCTTGGAGATCGT+CGG 0.618257 7_2:+4325500 None:intergenic
AGACTACAATAGCACATACA+AGG 0.619357 7_2:-4327189 Msa1045140:intron
ATCAGAAATGAAGAAGCTAA+GGG 0.620572 7_2:-4324798 Msa1045140:CDS
CATTTGAGACACCAGGTGGA+AGG 0.628471 7_2:-4324646 Msa1045140:CDS
GGTTCAATGGATAAGCACTT+TGG 0.630664 7_2:-4324677 Msa1045140:CDS
AGCTCAATCAGTAGTTCCTG+TGG 0.631311 7_2:-4325320 Msa1045140:CDS
TCTGTGGAAGAAGAAAAGGC+AGG 0.632238 7_2:-4324827 Msa1045140:CDS
GGGGAACTGATTTGCCTCAG+AGG 0.632430 7_2:-4325624 Msa1045140:CDS
CTTCTTCTACCACCTAAACA+TGG 0.633654 7_2:+4324344 None:intergenic
ACTGACCGAAGTCCAAAACT+AGG 0.638929 7_2:-4325526 Msa1045140:CDS
GCTAGGGTTCCTGAAAGGTG+TGG 0.647120 7_2:-4324698 Msa1045140:CDS
GACCGACGATCTCCAAGAGG+TGG 0.659823 7_2:-4325502 Msa1045140:CDS
TATCCATGATACCTTCCACC+TGG 0.660218 7_2:+4324635 None:intergenic
AAGCTGTTATGAACTGTGGG+AGG 0.661755 7_2:+4329869 None:intergenic
ATGATGTGATGGATCTGAGT+CGG 0.663820 7_2:+4325561 None:intergenic
ACGGTGACGTGAATTTGTTG+AGG 0.666569 7_2:+4324416 None:intergenic
GAATGAGAAGTTGAAATCTG+TGG 0.677488 7_2:-4324843 Msa1045140:CDS
CCTCAGAGGCAGTCACCAAG+AGG 0.691940 7_2:-4325610 Msa1045140:CDS
TAAGGGTGCAGACAGAACAA+TGG 0.700140 7_2:-4324781 Msa1045140:CDS
GGTGGAACATTTGAGACACC+AGG 0.705191 7_2:-4324653 Msa1045140:CDS
GGAGACCGACGATCTCCAAG+AGG 0.717137 7_2:-4325505 Msa1045140:CDS
GGAACATTTGAGACACCAGG+TGG 0.727853 7_2:-4324650 Msa1045140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAATAATAATAATAATAA+TGG + chr7_2:4324948-4324967 None:intergenic 0.0%
!!! TTAAATAATTTTTTTTTTTT+TGG + chr7_2:4325266-4325285 None:intergenic 0.0%
!! AAAAAATTATAGCAAAATAT+TGG - chr7_2:4324990-4325009 Msa1045140:CDS 10.0%
!! ATTTAAATAAGATTAAATGA+AGG - chr7_2:4325280-4325299 Msa1045140:CDS 10.0%
!!! AGTTTTATTTAATTTCATTT+TGG - chr7_2:4325463-4325482 Msa1045140:CDS 10.0%
!!! GTTTTATTTAATTTCATTTT+GGG - chr7_2:4325464-4325483 Msa1045140:CDS 10.0%
!!! TTTTATTTAATTTCATTTTG+GGG - chr7_2:4325465-4325484 Msa1045140:CDS 10.0%
!!! CATTTAGTTTTATAATTTAT+AGG - chr7_2:4326406-4326425 Msa1045140:intron 10.0%
!!! AATAATTACATTTTAAAAGA+AGG + chr7_2:4328199-4328218 None:intergenic 10.0%
!!! TTGTCTGAATTTTTTTTTTT+TGG - chr7_2:4325105-4325124 Msa1045140:CDS 15.0%
!! AAAACAAAAAACAATCATTT+CGG - chr7_2:4325501-4325520 Msa1045140:CDS 15.0%
!! AGATTTATTTAAATTGACAT+CGG - chr7_2:4325791-4325810 Msa1045140:intron 15.0%
!!! TTTTACTATTTTTACTTCAT+AGG - chr7_2:4325975-4325994 Msa1045140:intron 15.0%
!! ACATTATTATATAAAGCAAA+GGG + chr7_2:4326136-4326155 None:intergenic 15.0%
!! TTTGCTTTATATAATAATGT+GGG - chr7_2:4326136-4326155 Msa1045140:intron 15.0%
!! AAATTATAAAAGAAGAAGAT+AGG - chr7_2:4326284-4326303 Msa1045140:intron 15.0%
!! AATTATAAAAGAAGAAGATA+GGG - chr7_2:4326285-4326304 Msa1045140:intron 15.0%
!! AAAATTTGAAAAAGTAATGT+TGG + chr7_2:4326539-4326558 None:intergenic 15.0%
!!! AATAAAAGTATTGGTAAAAT+AGG + chr7_2:4326674-4326693 None:intergenic 15.0%
!! TAATTTATTAATAAGTTGCA+TGG - chr7_2:4326693-4326712 Msa1045140:intron 15.0%
!!! TAACATTTGATGATTTTATT+AGG - chr7_2:4326803-4326822 Msa1045140:intron 15.0%
!!! CTATTTTTCTTTAAAGAAAA+TGG + chr7_2:4327926-4327945 None:intergenic 15.0%
!!! TGTTTTTTATATCAAAATCA+GGG + chr7_2:4328305-4328324 None:intergenic 15.0%
!!! TTGTTTTTTATATCAAAATC+AGG + chr7_2:4328306-4328325 None:intergenic 15.0%
!! TGATATAAAAAACAAAATCA+TGG - chr7_2:4328311-4328330 Msa1045140:intron 15.0%
!!! ATTAATTGTTGTTTTCAAAT+AGG - chr7_2:4328413-4328432 Msa1045140:intron 15.0%
!!! TTAATTGTTGTTTTCAAATA+GGG - chr7_2:4328414-4328433 Msa1045140:intron 15.0%
!! AATAGTACTAAAAAAATGGA+GGG + chr7_2:4324338-4324357 None:intergenic 20.0%
!! AAATAGTACTAAAAAAATGG+AGG + chr7_2:4324339-4324358 None:intergenic 20.0%
!! AGCAAATAGTACTAAAAAAA+TGG + chr7_2:4324342-4324361 None:intergenic 20.0%
!!! TTTTTTTTAGTGTCTTGAAT+TGG - chr7_2:4324554-4324573 Msa1045140:CDS 20.0%
!!! GAAGAAAGTTTGAATTTTTA+TGG - chr7_2:4324790-4324809 Msa1045140:CDS 20.0%
!! ATGCATTATAATATGCAAAT+TGG + chr7_2:4325393-4325412 None:intergenic 20.0%
!! GATTTATTTAAATTGACATC+GGG - chr7_2:4325792-4325811 Msa1045140:intron 20.0%
!! AATAAAAAGTTAACTCAGAT+AGG + chr7_2:4325888-4325907 None:intergenic 20.0%
!!! GGTTTTAAATAAGTTATTGT+TGG - chr7_2:4325996-4326015 Msa1045140:intron 20.0%
!! CACATTATTATATAAAGCAA+AGG + chr7_2:4326137-4326156 None:intergenic 20.0%
!! CTTTGCTTTATATAATAATG+TGG - chr7_2:4326135-4326154 Msa1045140:intron 20.0%
!! TTGCTTTATATAATAATGTG+GGG - chr7_2:4326137-4326156 Msa1045140:intron 20.0%
!! ATGCATATTTGGAAATTATA+GGG + chr7_2:4326353-4326372 None:intergenic 20.0%
!!! TTGTGTAATTTTAAGATTTG+TGG + chr7_2:4326583-4326602 None:intergenic 20.0%
!! ATTTATATAGCTACTATTGT+AGG - chr7_2:4326900-4326919 Msa1045140:intron 20.0%
!! TTTATATAGCTACTATTGTA+GGG - chr7_2:4326901-4326920 Msa1045140:intron 20.0%
!!! TAAATTCCTTTTTCTTTTCT+TGG - chr7_2:4327257-4327276 Msa1045140:intron 20.0%
!!! AAATTCCTTTTTCTTTTCTT+GGG - chr7_2:4327258-4327277 Msa1045140:intron 20.0%
!! TTGAAATCATGTAAAATTGT+TGG - chr7_2:4327315-4327334 Msa1045140:intron 20.0%
!! TGAAATCATGTAAAATTGTT+GGG - chr7_2:4327316-4327335 Msa1045140:intron 20.0%
!! TGAATATCTATGTGTATTTA+TGG + chr7_2:4327834-4327853 None:intergenic 20.0%
!!! TAATTGACATTAACTTGAAA+AGG - chr7_2:4327898-4327917 Msa1045140:intron 20.0%
!!! AATTGACATTAACTTGAAAA+GGG - chr7_2:4327899-4327918 Msa1045140:intron 20.0%
!! ACAGTGTTTAAAAAAAATCA+CGG + chr7_2:4328372-4328391 None:intergenic 20.0%
!!! TAATTGTTGTTTTCAAATAG+GGG - chr7_2:4328415-4328434 Msa1045140:intron 20.0%
!! AAAACATGATGTATTTGAAA+AGG - chr7_2:4328918-4328937 Msa1045140:intron 20.0%
!!! TTTTGTCAAAAGTAATACTT+TGG - chr7_2:4329617-4329636 Msa1045140:intron 20.0%
!! ATAGTTAAAATACTACTCAT+TGG + chr7_2:4329692-4329711 None:intergenic 20.0%
!!! AATGAGTAGTATTTTAACTA+TGG - chr7_2:4329691-4329710 Msa1045140:five_prime_UTR 20.0%
!!! TTGTTTCTGTTGTATTATAA+TGG - chr7_2:4329793-4329812 Msa1045140:five_prime_UTR 20.0%
! CAAAAAATGAAGAGAGAAAT+GGG + chr7_2:4324239-4324258 None:intergenic 25.0%
! ACAAAAAATGAAGAGAGAAA+TGG + chr7_2:4324240-4324259 None:intergenic 25.0%
!!! TTCCTTGTTTTTTGGTTTTT+GGG - chr7_2:4324281-4324300 Msa1045140:three_prime_UTR 25.0%
!! AAAAAAATGGAGGGTTTTTA+AGG + chr7_2:4324329-4324348 None:intergenic 25.0%
!! TTTTAGTACTATTTGCTTTC+AGG - chr7_2:4324345-4324364 Msa1045140:three_prime_UTR 25.0%
! TTTAGTACTATTTGCTTTCA+GGG - chr7_2:4324346-4324365 Msa1045140:three_prime_UTR 25.0%
! TATGCAAAATATTCTCATCA+AGG - chr7_2:4324416-4324435 Msa1045140:three_prime_UTR 25.0%
! TAGTTGTTAAACTTCTTTAG+CGG - chr7_2:4325034-4325053 Msa1045140:CDS 25.0%
! GAAATTTACTTGAGTGTTAT+TGG - chr7_2:4325143-4325162 Msa1045140:CDS 25.0%
!!! TTGATGATGTATTTTAGATG+AGG - chr7_2:4325169-4325188 Msa1045140:CDS 25.0%
! ATTGTCAGATATCAATCAAA+CGG + chr7_2:4325757-4325776 None:intergenic 25.0%
!! ATACTTTTATCAAAAGAGCA+TGG - chr7_2:4325937-4325956 Msa1045140:CDS 25.0%
! AAATAAGTTATTGTTGGTCA+TGG - chr7_2:4326002-4326021 Msa1045140:intron 25.0%
! TTATTATATAAAGCAAAGGG+TGG + chr7_2:4326133-4326152 None:intergenic 25.0%
! CATGCATATTTGGAAATTAT+AGG + chr7_2:4326354-4326373 None:intergenic 25.0%
! GTAGGTCAAATAATTATTGT+AGG + chr7_2:4326623-4326642 None:intergenic 25.0%
!! AATTCCTTTTTCTTTTCTTG+GGG - chr7_2:4327259-4327278 Msa1045140:intron 25.0%
! ACATTATACTACCAACAATT+GGG + chr7_2:4327440-4327459 None:intergenic 25.0%
! AACATTATACTACCAACAAT+TGG + chr7_2:4327441-4327460 None:intergenic 25.0%
!! TTTTATTGCATGTCATTGTT+TGG - chr7_2:4327594-4327613 Msa1045140:intron 25.0%
!! TCTTTCTTGATTTTTCCAAA+AGG - chr7_2:4327674-4327693 Msa1045140:intron 25.0%
!! CTTTCTTGATTTTTCCAAAA+GGG - chr7_2:4327675-4327694 Msa1045140:intron 25.0%
!!! AATACCTTTCTAGTTTCTAA+TGG - chr7_2:4327703-4327722 Msa1045140:intron 25.0%
!! GATAATTCTTTGATTTCTTG+AGG - chr7_2:4327728-4327747 Msa1045140:intron 25.0%
! ATGTGACTAATAAACTAGAA+AGG + chr7_2:4327766-4327785 None:intergenic 25.0%
! GTCAATTAAGCTCTTAAATT+AGG + chr7_2:4327886-4327905 None:intergenic 25.0%
!!! ATTTTTTTGTTACCTTTAGC+AGG - chr7_2:4328042-4328061 Msa1045140:intron 25.0%
! TTTAAAAAAAATCACGGTCT+CGG + chr7_2:4328366-4328385 None:intergenic 25.0%
! ATTAATACAGCTTAAACGTT+TGG + chr7_2:4328399-4328418 None:intergenic 25.0%
! GAAGAAATTGAGTAAAGAAT+TGG - chr7_2:4329164-4329183 Msa1045140:intron 25.0%
!! TTAGAATGTTTGGTGATTTA+TGG - chr7_2:4329520-4329539 Msa1045140:intron 25.0%
! ACATAATAGTACACTCTTAA+TGG + chr7_2:4329819-4329838 None:intergenic 25.0%
!!! TGATATGAACTTTTGAAAGA+TGG - chr7_2:4329866-4329885 Msa1045140:five_prime_UTR 25.0%
TTAAAGCTGTTATGAACTGT+GGG + chr7_2:4324195-4324214 None:intergenic 30.0%
ATTAAAGCTGTTATGAACTG+TGG + chr7_2:4324196-4324215 None:intergenic 30.0%
!!! CTTCCTTGTTTTTTGGTTTT+TGG - chr7_2:4324280-4324299 Msa1045140:three_prime_UTR 30.0%
TACCCAAAAACCAAAAAACA+AGG + chr7_2:4324286-4324305 None:intergenic 30.0%
GATGTAGATGAACAAACATT+CGG - chr7_2:4324614-4324633 Msa1045140:CDS 30.0%
AGGAGATATAAGACATTGTT+TGG + chr7_2:4324660-4324679 None:intergenic 30.0%
AAATGCACAGGAACAATTTA+AGG + chr7_2:4324680-4324699 None:intergenic 30.0%
! CTATTGACCATTGTCTTTTT+AGG - chr7_2:4324714-4324733 Msa1045140:CDS 30.0%
!! AAAAGCACCTAAAAAGACAA+TGG + chr7_2:4324724-4324743 None:intergenic 30.0%
GCTAAAGAAGTTTAACAACT+AGG + chr7_2:4325035-4325054 None:intergenic 30.0%
TAGCTTAGTAGTAAAAGGAT+TGG + chr7_2:4325061-4325080 None:intergenic 30.0%
! AGATTTGAAACATGTCTAGA+TGG + chr7_2:4325086-4325105 None:intergenic 30.0%
!! TCTTTAGTGTATTTTAGACG+TGG - chr7_2:4325199-4325218 Msa1045140:CDS 30.0%
!! CTTTAGTGTATTTTAGACGT+GGG - chr7_2:4325200-4325219 Msa1045140:CDS 30.0%
! TTTTAGACGTGGGAAAATTA+TGG - chr7_2:4325210-4325229 Msa1045140:CDS 30.0%
ATGAAGGATTAAGAAAGAGT+TGG - chr7_2:4325296-4325315 Msa1045140:CDS 30.0%
TGTTTGATATGAGCTGAATT+TGG - chr7_2:4325607-4325626 Msa1045140:CDS 30.0%
AAAAGTTAACTCAGATAGGT+TGG + chr7_2:4325884-4325903 None:intergenic 30.0%
! CAGTTTTCATAAGTATCTTG+TGG - chr7_2:4326091-4326110 Msa1045140:intron 30.0%
AGGGACTAAGATAAAATTTG+AGG + chr7_2:4326334-4326353 None:intergenic 30.0%
CATGCTTCTAATTTCACTTT+AGG - chr7_2:4326374-4326393 Msa1045140:intron 30.0%
TATTGTTTGCCTTATAATCG+CGG - chr7_2:4326510-4326529 Msa1045140:intron 30.0%
AAAGTGTATCATTACAGAGT+AGG + chr7_2:4326641-4326660 None:intergenic 30.0%
TTGGTAAAATAGGAGTTGAA+GGG + chr7_2:4326664-4326683 None:intergenic 30.0%
ATTGGTAAAATAGGAGTTGA+AGG + chr7_2:4326665-4326684 None:intergenic 30.0%
TAACACAAACAACCTTAGTA+GGG + chr7_2:4326745-4326764 None:intergenic 30.0%
CTGAAAACATCAGAAGAAAA+AGG + chr7_2:4326776-4326795 None:intergenic 30.0%
!!! AGTTTGTTCAAGTGTTGTTT+TGG + chr7_2:4326844-4326863 None:intergenic 30.0%
!!! TTTTTTTCTGCAATGAATGC+CGG + chr7_2:4326953-4326972 None:intergenic 30.0%
ATAGGGAAACATATTTACTG+CGG + chr7_2:4327112-4327131 None:intergenic 30.0%
CAGTAAATATGTTTCCCTAT+TGG - chr7_2:4327112-4327131 Msa1045140:intron 30.0%
ACACATGTACAATTCCAATA+GGG + chr7_2:4327129-4327148 None:intergenic 30.0%
TACACATGTACAATTCCAAT+AGG + chr7_2:4327130-4327149 None:intergenic 30.0%
ACTTTCCCATAAATTGCATT+AGG + chr7_2:4327188-4327207 None:intergenic 30.0%
AGTTATATGCTAGCATTATC+AGG - chr7_2:4327211-4327230 Msa1045140:CDS 30.0%
TCTTCCATTAGAAACTAGAA+AGG + chr7_2:4327710-4327729 None:intergenic 30.0%
AATTAGGTGTAACAGATAGA+AGG + chr7_2:4327870-4327889 None:intergenic 30.0%
GTGATAGAACAACAATTCTA+AGG + chr7_2:4328098-4328117 None:intergenic 30.0%
TAACATACATACCTTGATCT+TGG + chr7_2:4328146-4328165 None:intergenic 30.0%
GTATAACATGATTAGTAGCA+AGG + chr7_2:4328228-4328247 None:intergenic 30.0%
! TTTTGATAGACTGTGAGTTT+AGG - chr7_2:4328261-4328280 Msa1045140:intron 30.0%
TCAGGTATAATAACATCTTG+AGG + chr7_2:4328835-4328854 None:intergenic 30.0%
AAGTTTGGAGGAAAAAAAGA+AGG - chr7_2:4329032-4329051 Msa1045140:intron 30.0%
AAAGAATTGGAAGCTAGTAA+AGG - chr7_2:4329177-4329196 Msa1045140:intron 30.0%
AAGAATTGGAAGCTAGTAAA+GGG - chr7_2:4329178-4329197 Msa1045140:intron 30.0%
AATCAGAAATGAAGAAGCTA+AGG - chr7_2:4329259-4329278 Msa1045140:intron 30.0%
ATCAGAAATGAAGAAGCTAA+GGG - chr7_2:4329260-4329279 Msa1045140:intron 30.0%
!!! TTTTGGTAGTGGAAAAAAGA+AGG - chr7_2:4329485-4329504 Msa1045140:intron 30.0%
!! TTTGGTAGTGGAAAAAAGAA+GGG - chr7_2:4329486-4329505 Msa1045140:intron 30.0%
TCTTCTGGTATTAGAATGTT+TGG - chr7_2:4329510-4329529 Msa1045140:intron 30.0%
!! TTTTAACTATGGCCATGTTT+AGG - chr7_2:4329702-4329721 Msa1045140:five_prime_UTR 30.0%
GAAGTGCAAGAAACTAGAAA+GGG + chr7_2:4324264-4324283 None:intergenic 35.0%
!!! TCTTGCACTTCCTTGTTTTT+TGG - chr7_2:4324273-4324292 Msa1045140:three_prime_UTR 35.0%
ACCTCTTAAAGTTGTGTAAC+TGG - chr7_2:4324903-4324922 Msa1045140:CDS 35.0%
TCCAGTTACACAACTTTAAG+AGG + chr7_2:4324907-4324926 None:intergenic 35.0%
TGGTGTAGCTTAGTAGTAAA+AGG + chr7_2:4325066-4325085 None:intergenic 35.0%
CCAAACAGTATGTAAGACAA+AGG + chr7_2:4325696-4325715 None:intergenic 35.0%
CCTTTGTCTTACATACTGTT+TGG - chr7_2:4325693-4325712 Msa1045140:intron 35.0%
TTGTCTTACATACTGTTTGG+TGG - chr7_2:4325696-4325715 Msa1045140:intron 35.0%
!! AATTTTTGACTAGCTGCATG+CGG + chr7_2:4325729-4325748 None:intergenic 35.0%
! AGTGTTATTCTTCAAGGTCT+CGG + chr7_2:4325834-4325853 None:intergenic 35.0%
AGGTCTCAATTCAATGTCAT+CGG - chr7_2:4325857-4325876 Msa1045140:intron 35.0%
AGGGACAATTCAATAGAGAA+TGG - chr7_2:4326188-4326207 Msa1045140:intron 35.0%
AGAAGAGAATGACAATAAGC+TGG + chr7_2:4326222-4326241 None:intergenic 35.0%
! TAGAAGCATGCATGCATATT+TGG + chr7_2:4326364-4326383 None:intergenic 35.0%
ATTGTTTGCCTTATAATCGC+GGG - chr7_2:4326511-4326530 Msa1045140:intron 35.0%
TCTAGATATTTGCCCTACTA+AGG - chr7_2:4326730-4326749 Msa1045140:intron 35.0%
GTAACACAAACAACCTTAGT+AGG + chr7_2:4326746-4326765 None:intergenic 35.0%
AGACTACAATAGCACATACA+AGG - chr7_2:4326869-4326888 Msa1045140:intron 35.0%
!!! TTTTTTCTGCAATGAATGCC+GGG + chr7_2:4326952-4326971 None:intergenic 35.0%
CATTGCAGAAAAAAACCCTT+TGG - chr7_2:4326958-4326977 Msa1045140:intron 35.0%
ATTAGTCAATCAGAGCCATT+CGG + chr7_2:4327065-4327084 None:intergenic 35.0%
!! CCTTTCAAGTTGTTGCATAA+TGG + chr7_2:4327157-4327176 None:intergenic 35.0%
CCATTATGCAACAACTTGAA+AGG - chr7_2:4327154-4327173 Msa1045140:intron 35.0%
TATGCAACAACTTGAAAGGA+TGG - chr7_2:4327158-4327177 Msa1045140:intron 35.0%
AAGATTGGACGATTCATATG+GGG + chr7_2:4327378-4327397 None:intergenic 35.0%
CAAGATTGGACGATTCATAT+GGG + chr7_2:4327379-4327398 None:intergenic 35.0%
TCAAGATTGGACGATTCATA+TGG + chr7_2:4327380-4327399 None:intergenic 35.0%
ACAACTCATATCCCAATTGT+TGG - chr7_2:4327426-4327445 Msa1045140:intron 35.0%
!!! AAAGGTATTGATGACCCTTT+TGG + chr7_2:4327692-4327711 None:intergenic 35.0%
TAGTCACATTTGTAGTGAGT+TGG - chr7_2:4327777-4327796 Msa1045140:intron 35.0%
! GCTTCTTTATGATAGTGTGT+TGG - chr7_2:4327799-4327818 Msa1045140:intron 35.0%
! TTTTTGTTACCTTTAGCAGG+TGG - chr7_2:4328045-4328064 Msa1045140:intron 35.0%
CATATCAAATGCCAAGATCA+AGG - chr7_2:4328132-4328151 Msa1045140:intron 35.0%
CTTCTTCTGATTTACTGTCT+CGG + chr7_2:4328590-4328609 None:intergenic 35.0%
ACAGTAAATCAGAAGAAGCT+CGG - chr7_2:4328592-4328611 Msa1045140:intron 35.0%
AGCTGAAAAGAAAAAAGCTG+AGG - chr7_2:4328699-4328718 Msa1045140:intron 35.0%
! TCTTGAAACTTTTCTACCAC+AGG + chr7_2:4328757-4328776 None:intergenic 35.0%
! GTCTCTTCTTGATTTTCATC+AGG + chr7_2:4328853-4328872 None:intergenic 35.0%
TGAAGTTCCTATCGAAAAGT+TGG - chr7_2:4328882-4328901 Msa1045140:intron 35.0%
! TCAATTGCCAACTTTTCGAT+AGG + chr7_2:4328892-4328911 None:intergenic 35.0%
TAAGGAAGAAGGAATGACAA+TGG - chr7_2:4329137-4329156 Msa1045140:intron 35.0%
CAACTTCTCATTCAACTTCT+CGG + chr7_2:4329208-4329227 None:intergenic 35.0%
GAATGAGAAGTTGAAATCTG+TGG - chr7_2:4329215-4329234 Msa1045140:intron 35.0%
GAAATCTGTGGAAGAAGAAA+AGG - chr7_2:4329227-4329246 Msa1045140:intron 35.0%
GGTGATTTATGGAAGAAGAA+AGG - chr7_2:4329531-4329550 Msa1045140:intron 35.0%
! TTGTTGTGCATGCTTCTTTT+TGG - chr7_2:4329758-4329777 Msa1045140:five_prime_UTR 35.0%
CATAAATGAGCACTAGCTAC+TGG - chr7_2:4324159-4324178 Msa1045140:three_prime_UTR 40.0%
! GGAAGTGCAAGAAACTAGAA+AGG + chr7_2:4324265-4324284 None:intergenic 40.0%
! ATTGTTCCTGTGCATTTTGC+AGG - chr7_2:4324683-4324702 Msa1045140:CDS 40.0%
CTTCTTAAATTTCACGCGCA+TGG - chr7_2:4325633-4325652 Msa1045140:intron 40.0%
! GTGTTATTCTTCAAGGTCTC+GGG + chr7_2:4325833-4325852 None:intergenic 40.0%
!! CCTGAGAGTGTTATTCTTCA+AGG + chr7_2:4325840-4325859 None:intergenic 40.0%
CCTTGAAGAATAACACTCTC+AGG - chr7_2:4325837-4325856 Msa1045140:intron 40.0%
TAAGTATCTTGTGGCCACTA+TGG - chr7_2:4326100-4326119 Msa1045140:intron 40.0%
ATAATAATGTGGGGCCTTGA+TGG - chr7_2:4326146-4326165 Msa1045140:intron 40.0%
TAATAATGTGGGGCCTTGAT+GGG - chr7_2:4326147-4326166 Msa1045140:intron 40.0%
! ATGGGTTTGGTTTCCCAAAA+GGG - chr7_2:4326165-4326184 Msa1045140:intron 40.0%
! TTGAATTGTCCCTCCCTTTT+GGG + chr7_2:4326181-4326200 None:intergenic 40.0%
! ATTGAATTGTCCCTCCCTTT+TGG + chr7_2:4326182-4326201 None:intergenic 40.0%
CTGTCTGATCTTCATCCAAA+GGG + chr7_2:4326976-4326995 None:intergenic 40.0%
ACTGTCTGATCTTCATCCAA+AGG + chr7_2:4326977-4326996 None:intergenic 40.0%
!! GACTAATTGCATCGACTAGA+TGG - chr7_2:4327078-4327097 Msa1045140:intron 40.0%
CAACAACTTGAAAGGATGGT+GGG - chr7_2:4327162-4327181 Msa1045140:intron 40.0%
GTGGGCCTAATGCAATTTAT+GGG - chr7_2:4327180-4327199 Msa1045140:intron 40.0%
! ATCAGGTTGCACATTTGCAT+AGG - chr7_2:4327228-4327247 Msa1045140:CDS 40.0%
! TCAGGTTGCACATTTGCATA+GGG - chr7_2:4327229-4327248 Msa1045140:CDS 40.0%
AGCACCCCAAGAAAAGAAAA+AGG + chr7_2:4327266-4327285 None:intergenic 40.0%
!! TTTTCTTTTCTTGGGGTGCT+AGG - chr7_2:4327266-4327285 Msa1045140:intron 40.0%
! TTGTGTCGTTGGATCAAGAT+TGG + chr7_2:4327393-4327412 None:intergenic 40.0%
! AAAAGCATGCACAATGTCAG+AGG + chr7_2:4327546-4327565 None:intergenic 40.0%
! CATGTCATTGTTTGGAACAC+AGG - chr7_2:4327602-4327621 Msa1045140:intron 40.0%
AACACAGGACTAATGTGATG+TGG - chr7_2:4327617-4327636 Msa1045140:intron 40.0%
ACACAGGACTAATGTGATGT+GGG - chr7_2:4327618-4327637 Msa1045140:intron 40.0%
!! ATGATAGTGTGTTGGCTCAA+AGG - chr7_2:4327807-4327826 Msa1045140:intron 40.0%
!! TGATAGTGTGTTGGCTCAAA+GGG - chr7_2:4327808-4327827 Msa1045140:intron 40.0%
!! ATGATGTGATGGATCTGAGT+CGG + chr7_2:4328500-4328519 None:intergenic 40.0%
CAGTAAATCAGAAGAAGCTC+GGG - chr7_2:4328593-4328612 Msa1045140:intron 40.0%
AGCGTCGTTGAAATCAAGTT+TGG - chr7_2:4329017-4329036 Msa1045140:intron 40.0%
GTCGTTGAAATCAAGTTTGG+AGG - chr7_2:4329020-4329039 Msa1045140:intron 40.0%
GGAGGAAAAAAAGAAGGAAC+TGG - chr7_2:4329038-4329057 Msa1045140:intron 40.0%
GGTTCAATGGATAAGCACTT+TGG - chr7_2:4329381-4329400 Msa1045140:intron 40.0%
TCAATGGATAAGCACTTTGG+TGG - chr7_2:4329384-4329403 Msa1045140:intron 40.0%
!! GGAAGGTATCATGGATATGT+AGG - chr7_2:4329429-4329448 Msa1045140:intron 40.0%
ATATGTAGGTTCTCCTGGTA+TGG - chr7_2:4329443-4329462 Msa1045140:intron 40.0%
!! ATGGTTGATGATCTGGATGA+TGG - chr7_2:4329462-4329481 Msa1045140:intron 40.0%
!! GATGATCTGGATGATGGTTT+TGG - chr7_2:4329468-4329487 Msa1045140:intron 40.0%
GGAAAAAAGAAGGGTTCTTC+TGG - chr7_2:4329495-4329514 Msa1045140:intron 40.0%
AACTCACTGTCAATTCAAGC+AGG + chr7_2:4329575-4329594 None:intergenic 40.0%
GCTTGAATTGACAGTGAGTT+TGG - chr7_2:4329575-4329594 Msa1045140:intron 40.0%
CAGTGAGTTTGGCAGAATTA+CGG - chr7_2:4329586-4329605 Msa1045140:intron 40.0%
CAGCGAGTTCGACAAAATTA+CGG + chr7_2:4329664-4329683 None:intergenic 40.0%
TAACTATGGCCATGTTTAGG+TGG - chr7_2:4329705-4329724 Msa1045140:five_prime_UTR 40.0%
CTTCTTCTACCACCTAAACA+TGG + chr7_2:4329717-4329736 None:intergenic 40.0%
! ATTTTCCCCTTTTCCAACTG+AGG - chr7_2:4329899-4329918 Msa1045140:five_prime_UTR 40.0%
AAGCTGTTATGAACTGTGGG+AGG + chr7_2:4324192-4324211 None:intergenic 45.0%
AGTGATCCTGCAAAATGCAC+AGG + chr7_2:4324692-4324711 None:intergenic 45.0%
TATAAAGCAAAGGGTGGCAG+TGG + chr7_2:4326127-4326146 None:intergenic 45.0%
TTGGGAAACCAAACCCATCA+AGG + chr7_2:4326163-4326182 None:intergenic 45.0%
! GATGGGTTTGGTTTCCCAAA+AGG - chr7_2:4326164-4326183 Msa1045140:intron 45.0%
! GTTTGGTTTCCCAAAAGGGA+GGG - chr7_2:4326169-4326188 Msa1045140:intron 45.0%
CATCTTAGAATGCGAGCCAT+CGG - chr7_2:4327028-4327047 Msa1045140:intron 45.0%
TTCGGATGAAGATCAACCGA+TGG + chr7_2:4327047-4327066 None:intergenic 45.0%
TCGGTTGATCTTCATCCGAA+TGG - chr7_2:4327047-4327066 Msa1045140:intron 45.0%
GCAACAACTTGAAAGGATGG+TGG - chr7_2:4327161-4327180 Msa1045140:intron 45.0%
GGTGGGCCTAATGCAATTTA+TGG - chr7_2:4327179-4327198 Msa1045140:intron 45.0%
GCTGTCACAATTTGTGTCGT+TGG + chr7_2:4327404-4327423 None:intergenic 45.0%
! TGTGCATGCTTTTGCTCTTG+AGG - chr7_2:4327553-4327572 Msa1045140:intron 45.0%
! GTGCATGCTTTTGCTCTTGA+GGG - chr7_2:4327554-4327573 Msa1045140:intron 45.0%
CACAGGACTAATGTGATGTG+GGG - chr7_2:4327619-4327638 Msa1045140:intron 45.0%
AATCTCACTCCACCTGCTAA+AGG + chr7_2:4328057-4328076 None:intergenic 45.0%
TGTGAGTTTAGGCAGAATCG+CGG - chr7_2:4328272-4328291 Msa1045140:intron 45.0%
!! CAAGAGGTACTCATCAGCTT+CGG - chr7_2:4328464-4328483 Msa1045140:intron 45.0%
TCCATCACATCATCATCGAC+CGG - chr7_2:4328507-4328526 Msa1045140:intron 45.0%
TTTGGACTTCGGTCAGTAAC+CGG + chr7_2:4328529-4328548 None:intergenic 45.0%
ACTGACCGAAGTCCAAAACT+AGG - chr7_2:4328532-4328551 Msa1045140:intron 45.0%
!!! GGTCTCCTAGTTTTGGACTT+CGG + chr7_2:4328540-4328559 None:intergenic 45.0%
! GCAGATTTGGAATCACAGCT+TGG - chr7_2:4328625-4328644 Msa1045140:intron 45.0%
AGCTCAATCAGTAGTTCCTG+TGG - chr7_2:4328738-4328757 Msa1045140:intron 45.0%
! GATGTTGCTGGTTGAGTTTG+AGG + chr7_2:4328946-4328965 None:intergenic 45.0%
GCTGCTGAAACTAAGGAAGA+AGG - chr7_2:4329126-4329145 Msa1045140:intron 45.0%
TCTGTGGAAGAAGAAAAGGC+AGG - chr7_2:4329231-4329250 Msa1045140:intron 45.0%
CTGTGGAAGAAGAAAAGGCA+GGG - chr7_2:4329232-4329251 Msa1045140:intron 45.0%
! TAAGGGTGCAGACAGAACAA+TGG - chr7_2:4329277-4329296 Msa1045140:intron 45.0%
! TTGATATGAGTGCTGCTGCT+AGG - chr7_2:4329343-4329362 Msa1045140:intron 45.0%
! TGATATGAGTGCTGCTGCTA+GGG - chr7_2:4329344-4329363 Msa1045140:intron 45.0%
! TCCTGAAAGGTGTGGTTCAA+TGG - chr7_2:4329368-4329387 Msa1045140:intron 45.0%
TCCATTGAACCACACCTTTC+AGG + chr7_2:4329372-4329391 None:intergenic 45.0%
ATGGATAAGCACTTTGGTGG+TGG - chr7_2:4329387-4329406 Msa1045140:intron 45.0%
TATCCATGATACCTTCCACC+TGG + chr7_2:4329426-4329445 None:intergenic 45.0%
CATGGATATGTAGGTTCTCC+TGG - chr7_2:4329438-4329457 Msa1045140:intron 45.0%
!! TCCTGGTATGGTTGATGATC+TGG - chr7_2:4329455-4329474 Msa1045140:intron 45.0%
TCCAGATCATCAACCATACC+AGG + chr7_2:4329459-4329478 None:intergenic 45.0%
!!! CTGGATGATGGTTTTGGTAG+TGG - chr7_2:4329474-4329493 Msa1045140:intron 45.0%
! GCAGGTGCAGAAATCACTTT+TGG + chr7_2:4329557-4329576 None:intergenic 45.0%
!! ACGGTGACGTGAATTTGTTG+AGG + chr7_2:4329645-4329664 None:intergenic 45.0%
CTTCACCTCAGTTGGAAAAG+GGG + chr7_2:4329907-4329926 None:intergenic 45.0%
CCTTCACCTCAGTTGGAAAA+GGG + chr7_2:4329908-4329927 None:intergenic 45.0%
! CCTTTTCCAACTGAGGTGAA+GGG - chr7_2:4329906-4329925 Msa1045140:five_prime_UTR 45.0%
TAAGAACCCTTCACCTCAGT+TGG + chr7_2:4329915-4329934 None:intergenic 45.0%
!!! TTTGTTTATTTTATTTTAAA+TGG - chr7_2:4324742-4324761 Msa1045140:CDS 5.0%
!!! ATAATTAGTAATTTTTTTTT+TGG + chr7_2:4324860-4324879 None:intergenic 5.0%
!!! ATTTAGTTTTATAATTTATA+GGG - chr7_2:4326407-4326426 Msa1045140:intron 5.0%
!!! TTATTTTTTATTTTTAGTTT+CGG + chr7_2:4326448-4326467 None:intergenic 5.0%
!!! TAATAAATTAATAAAAGTAT+TGG + chr7_2:4326683-4326702 None:intergenic 5.0%
! GGTTTGGTTTCCCAAAAGGG+AGG - chr7_2:4326168-4326187 Msa1045140:intron 50.0%
TGTTGGAGCCCGCGATTATA+AGG + chr7_2:4326522-4326541 None:intergenic 50.0%
! TTGCCGCGTTTTCACAATCC+CGG - chr7_2:4326931-4326950 Msa1045140:intron 50.0%
ATGCCGGGATTGTGAAAACG+CGG + chr7_2:4326937-4326956 None:intergenic 50.0%
! CATGCTTTTGCTCTTGAGGG+TGG - chr7_2:4327557-4327576 Msa1045140:intron 50.0%
CGAAGCTGATGAGTACCTCT+TGG + chr7_2:4328466-4328485 None:intergenic 50.0%
! ACCGGTCGATGATGATGTGA+TGG + chr7_2:4328511-4328530 None:intergenic 50.0%
! GATCGTCGGTCTCCTAGTTT+TGG + chr7_2:4328547-4328566 None:intergenic 50.0%
TACCACCTCTTGGAGATCGT+CGG + chr7_2:4328561-4328580 None:intergenic 50.0%
TCGGATTGAGTACCACCTCT+TGG + chr7_2:4328571-4328590 None:intergenic 50.0%
!! TTCTCTGGCTCTGATGTTGC+TGG + chr7_2:4328958-4328977 None:intergenic 50.0%
! AGAGCCAGAGAAGCCTTTTG+TGG - chr7_2:4328966-4328985 Msa1045140:intron 50.0%
TCCTCCACAAAAGGCTTCTC+TGG + chr7_2:4328973-4328992 None:intergenic 50.0%
AGTGTCAGCTCCTCCACAAA+AGG + chr7_2:4328982-4329001 None:intergenic 50.0%
! GGTGGAACATTTGAGACACC+AGG - chr7_2:4329405-4329424 Msa1045140:intron 50.0%
! GGAACATTTGAGACACCAGG+TGG - chr7_2:4329408-4329427 Msa1045140:intron 50.0%
! CATTTGAGACACCAGGTGGA+AGG - chr7_2:4329412-4329431 Msa1045140:intron 50.0%
!! ACACCAGGTGGAAGGTATCA+TGG - chr7_2:4329420-4329439 Msa1045140:intron 50.0%
! CCCTTTTCCAACTGAGGTGA+AGG - chr7_2:4329905-4329924 Msa1045140:five_prime_UTR 50.0%
CCCTTCACCTCAGTTGGAAA+AGG + chr7_2:4329909-4329928 None:intergenic 50.0%
!! ATGTGGGGCCTTGATGGGTT+TGG - chr7_2:4326152-4326171 Msa1045140:intron 55.0%
!! GGGGAACTGATTTGCCTCAG+AGG - chr7_2:4328434-4328453 Msa1045140:intron 55.0%
CGGGACTCGCATTGCAGATT+TGG - chr7_2:4328612-4328631 Msa1045140:intron 55.0%
! GCCAGAGAAGCCTTTTGTGG+AGG - chr7_2:4328969-4328988 Msa1045140:intron 55.0%
CTGCTGCTAGGGTTCCTGAA+AGG - chr7_2:4329355-4329374 Msa1045140:intron 55.0%
GCTAGGGTTCCTGAAAGGTG+TGG - chr7_2:4329360-4329379 Msa1045140:intron 55.0%
AGGGTGGCAGTGGACCATAG+TGG + chr7_2:4326117-4326136 None:intergenic 60.0%
! CCTCTTGGTGACTGCCTCTG+AGG + chr7_2:4328451-4328470 None:intergenic 60.0%
CCTCAGAGGCAGTCACCAAG+AGG - chr7_2:4328448-4328467 Msa1045140:intron 60.0%
GGAGACCGACGATCTCCAAG+AGG - chr7_2:4328553-4328572 Msa1045140:intron 60.0%
GACCGACGATCTCCAAGAGG+TGG - chr7_2:4328556-4328575 Msa1045140:intron 60.0%
GCTGCAGCTGCAGTGCTTGC+AGG - chr7_2:4329315-4329334 Msa1045140:intron 65.0%
GCAGCTGCAGTGCTTGCAGG+AGG - chr7_2:4329318-4329337 Msa1045140:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 4324124 4329956 4324124 ID=Msa1045140;Name=Msa1045140
chr7_2 mRNA 4324124 4329956 4324124 ID=Msa1045140-mRNA-1;Parent=Msa1045140;Name=Msa1045140-mRNA-1;_AED=0.06;_eAED=0.06;_QI=293|0.66|0.75|1|0.33|0.75|4|393|422
chr7_2 exon 4324124 4325645 4324124 ID=Msa1045140-mRNA-1:exon:1030;Parent=Msa1045140-mRNA-1
chr7_2 exon 4325927 4325979 4325927 ID=Msa1045140-mRNA-1:exon:1029;Parent=Msa1045140-mRNA-1
chr7_2 exon 4327190 4327255 4327190 ID=Msa1045140-mRNA-1:exon:1028;Parent=Msa1045140-mRNA-1
chr7_2 exon 4329643 4329956 4329643 ID=Msa1045140-mRNA-1:exon:1027;Parent=Msa1045140-mRNA-1
chr7_2 five_prime_UTR 4329664 4329956 4329664 ID=Msa1045140-mRNA-1:five_prime_utr;Parent=Msa1045140-mRNA-1
chr7_2 CDS 4329643 4329663 4329643 ID=Msa1045140-mRNA-1:cds;Parent=Msa1045140-mRNA-1
chr7_2 CDS 4327190 4327255 4327190 ID=Msa1045140-mRNA-1:cds;Parent=Msa1045140-mRNA-1
chr7_2 CDS 4325927 4325979 4325927 ID=Msa1045140-mRNA-1:cds;Parent=Msa1045140-mRNA-1
chr7_2 CDS 4324517 4325645 4324517 ID=Msa1045140-mRNA-1:cds;Parent=Msa1045140-mRNA-1
chr7_2 three_prime_UTR 4324124 4324516 4324124 ID=Msa1045140-mRNA-1:three_prime_utr;Parent=Msa1045140-mRNA-1
Gene Sequence

>Msa1045140

ATGCAAAATATTCTCATCAAGGTTCATCATTGCAAATCCAAAACAACACTTGAACAAACTACTTTAGACTACAATAGCACATACAAGAATTGTTGTTCTATCACTTTCTATCATCAAGCATATCAAATGCCAAGATCAAGGGGAACTGATTTGCCTCAGAGGCAGTCACCAAGAGGTACTCATCAGCTTCGGACATCGAGTTCCGACTCAGATCCATCACATCATCATCGACCGGTTACTGACCGAAGTCCAAAACTAGGAGACCGACGATCTCCAAGAGGTGGTACTCAATCCGAGACAGTAAATCAGAAGAAGCTCGGGACTCGCATTGCAGATTTGGAATCACAGCTTGGTCAAGCACAACAAGAGTTGAAAAATTTGAAAAATCAACTATCTTCTGCAGAAGCTGAAAAGAAAAAAGCTGAGGATGAACTAGTGAAGAAAGCTCAATCAGTAGTTCCTGTGGTAGAAAAGTTTCAAGAGAAAAAAAGCATTTCAAAGAAAGCTCAAGAATGTAACATCAAAGCTGAAACAAAACCTCAAGATGTTATTATACCTGATGAAAATCAAGAAGAGACTGATGTGTTTGAAGTTCCTATCGAAAAGTTGGCAATTGAATTCAAAAAACATGATGTATTTGAAAAGGAACCTCAAACTCAACCAGCAACATCAGAGCCAGAGAAGCCTTTTGTGGAGGAGCTGACACTTAAAAACGAAGAAATAGCGTCGTTGAAATCAAGTTTGGAGGAAAAAAAGAAGGAACTGGAATCAATGAGTAATGAAAACGATAACTTGAAGAATCAACTGAATGAATCAGTTTCAAAAGTAAAAGCTGCTGAAACTAAGGAAGAAGGAATGACAATGGAGATGAAGAAATTGAGTAAAGAATTGGAAGCTAGTAAAGGGAATGCCGAGAAGTTGAATGAGAAGTTGAAATCTGTGGAAGAAGAAAAGGCAGGGTTAGAATCAGAAATGAAGAAGCTAAGGGTGCAGACAGAACAATGGAGAAAAGCAGCTGATGCTGCAGCTGCAGTGCTTGCAGGAGGTTTTGATATGAGTGCTGCTGCTAGGGTTCCTGAAAGGTGTGGTTCAATGGATAAGCACTTTGGTGGTGGAACATTTGAGACACCAGGTGGAAGGTATCATGGATATGTAGGTTCTCCTGGTATGGTTGATGATCTGGATGATGGTTTTGGTAGTGGAAAAAAGAAGGGTTCTTCTGGTATTAGAATGTTTGGTGATTTATGGAAGAAGAAAGGCCAAAAGTGA

Protein sequence

>Msa1045140

MQNILIKVHHCKSKTTLEQTTLDYNSTYKNCCSITFYHQAYQMPRSRGTDLPQRQSPRGTHQLRTSSSDSDPSHHHRPVTDRSPKLGDRRSPRGGTQSETVNQKKLGTRIADLESQLGQAQQELKNLKNQLSSAEAEKKKAEDELVKKAQSVVPVVEKFQEKKSISKKAQECNIKAETKPQDVIIPDENQEETDVFEVPIEKLAIEFKKHDVFEKEPQTQPATSEPEKPFVEELTLKNEEIASLKSSLEEKKKELESMSNENDNLKNQLNESVSKVKAAETKEEGMTMEMKKLSKELEASKGNAEKLNEKLKSVEEEKAGLESEMKKLRVQTEQWRKAADAAAAVLAGGFDMSAAARVPERCGSMDKHFGGGTFETPGGRYHGYVGSPGMVDDLDDGFGSGKKKGSSGIRMFGDLWKKKGQK*