Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055640 | XP_013448112.1 | 91.279 | 344 | 17 | 1 | 1 | 331 | 1 | 344 | 0.0 | 620 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055640 | sp|Q6BPT6|AIM32_DEBHA | 36.842 | 95 | 56 | 2 | 128 | 222 | 183 | 273 | 1.80e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055640 | B7FK85 | 91.279 | 344 | 17 | 1 | 1 | 331 | 1 | 344 | 0.0 | 620 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008200 | Msa1055640 | 0.812433 | 4.250499e-51 | -8.615850e-47 |
| Msa0657120 | Msa1055640 | 0.805386 | 1.368876e-49 | -8.615850e-47 |
| Msa0689440 | Msa1055640 | 0.810935 | 8.998273e-51 | -8.615850e-47 |
| Msa0701100 | Msa1055640 | 0.809486 | 1.847671e-50 | -8.615850e-47 |
| Msa0149440 | Msa1055640 | 0.821594 | 3.715792e-53 | -8.615850e-47 |
| Msa1055640 | Msa1382020 | 0.807864 | 4.104380e-50 | -8.615850e-47 |
| Msa0241950 | Msa1055640 | 0.810961 | 8.885960e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055640 | MtrunA17_Chr7g0227301 | 91.279 | 344 | 17 | 1 | 1 | 331 | 1 | 344 | 0.0 | 620 |
| Msa1055640 | MtrunA17_Chr6g0449451 | 63.584 | 346 | 105 | 4 | 3 | 331 | 40 | 381 | 4.94e-151 | 429 |
| Msa1055640 | MtrunA17_Chr5g0446741 | 45.548 | 292 | 135 | 5 | 2 | 279 | 55 | 336 | 5.48e-86 | 265 |
| Msa1055640 | MtrunA17_Chr3g0078811 | 47.619 | 231 | 108 | 1 | 2 | 219 | 55 | 285 | 4.47e-77 | 239 |
| Msa1055640 | MtrunA17_Chr6g0449431 | 48.168 | 191 | 58 | 6 | 102 | 278 | 19 | 182 | 1.03e-48 | 164 |
| Msa1055640 | MtrunA17_Chr6g0449421 | 43.925 | 107 | 25 | 1 | 17 | 123 | 1 | 72 | 2.71e-21 | 87.8 |
| Msa1055640 | MtrunA17_Chr6g0449411 | 75.000 | 40 | 10 | 0 | 138 | 177 | 24 | 63 | 7.56e-16 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1055640 | AT5G40510.1 | 45.455 | 341 | 152 | 7 | 5 | 331 | 13 | 333 | 1.81e-99 | 296 |
| Msa1055640 | AT5G40510.2 | 45.455 | 341 | 152 | 7 | 5 | 331 | 49 | 369 | 8.16e-99 | 296 |
| Msa1055640 | AT3G27570.2 | 48.225 | 338 | 140 | 9 | 11 | 331 | 21 | 340 | 4.01e-90 | 273 |
| Msa1055640 | AT3G27570.1 | 48.225 | 338 | 140 | 9 | 11 | 331 | 60 | 379 | 1.56e-89 | 273 |
| Msa1055640 | AT4G26620.1 | 43.243 | 296 | 139 | 5 | 9 | 279 | 62 | 353 | 1.62e-80 | 252 |
| Msa1055640 | AT5G55900.1 | 35.230 | 369 | 178 | 7 | 12 | 329 | 53 | 411 | 2.60e-63 | 206 |
| Msa1055640 | AT5G55900.2 | 33.441 | 311 | 146 | 7 | 70 | 329 | 7 | 307 | 2.59e-44 | 154 |
Find 102 sgRNAs with CRISPR-Local
Find 354 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTTCCATTAGCAAGTTTC+TGG | 0.179269 | 7_2:+30557439 | None:intergenic |
| AATATTCTTCTCGATCTTAT+TGG | 0.182910 | 7_2:+30557398 | None:intergenic |
| TCATTTGCTCCCTTCACTTC+TGG | 0.191464 | 7_2:+30557462 | None:intergenic |
| AAGCTCTGATAACTTGTTAT+AGG | 0.191905 | 7_2:-30557141 | Msa1055640:three_prime_UTR |
| GACCTGTATTTAACCATTTC+CGG | 0.202413 | 7_2:+30561708 | None:intergenic |
| TGTACATCGACCAAAATAAT+AGG | 0.223820 | 7_2:+30557106 | None:intergenic |
| GACTTACATAGACGCTTTAT+TGG | 0.224630 | 7_2:-30557045 | Msa1055640:three_prime_UTR |
| AAACGTGTCGGCGACGAGTT+TGG | 0.257221 | 7_2:+30561901 | None:intergenic |
| CTCTCTTCTCTTCATTTCAA+TGG | 0.270613 | 7_2:-30562086 | Msa1055640:exon |
| GATTGTTGCCAGGGTGTTAA+TGG | 0.275956 | 7_2:-30557339 | Msa1055640:CDS |
| AACGTGTCGGCGACGAGTTT+GGG | 0.328880 | 7_2:+30561902 | None:intergenic |
| AATCAGTCACGCAGACAAAA+TGG | 0.345250 | 7_2:+30556922 | None:intergenic |
| TTCTTTAATTGAAAGGGGTT+TGG | 0.346056 | 7_2:-30559676 | Msa1055640:intron |
| ACCTGTATTTAACCATTTCC+GGG | 0.368996 | 7_2:+30561709 | None:intergenic |
| GAGAGCTAAATCGTTCTTAC+GGG | 0.376479 | 7_2:+30561874 | None:intergenic |
| CTCACAGCCGTTGGTGTGCT+TGG | 0.388801 | 7_2:-30557219 | Msa1055640:CDS |
| TGTTACTGCCTGTTCTCACC+TGG | 0.390483 | 7_2:-30559446 | Msa1055640:CDS |
| TCCCGGAAATGGTTAAATAC+AGG | 0.396178 | 7_2:-30561710 | Msa1055640:intron |
| AGCTTCGAGGCGTGGTGGCC+AGG | 0.396703 | 7_2:+30561943 | None:intergenic |
| TGACAAACCATATGGGCTAT+TGG | 0.398985 | 7_2:-30559610 | Msa1055640:CDS |
| TTAAAATTATTGATGAGAAC+TGG | 0.408427 | 7_2:+30559508 | None:intergenic |
| AGTAAATCAGGAATATCATT+AGG | 0.409424 | 7_2:+30559244 | None:intergenic |
| CATTTCAGGGCGAGTGAAAC+CGG | 0.413889 | 7_2:+30562039 | None:intergenic |
| ATATGTTGGTCAAGTAAATC+AGG | 0.426210 | 7_2:+30559232 | None:intergenic |
| CTTGACCAACATATTGCAAA+AGG | 0.428529 | 7_2:-30559223 | Msa1055640:CDS |
| CTGGGTGGGCACAAGTATGC+TGG | 0.430995 | 7_2:-30559427 | Msa1055640:CDS |
| AAATTGTTATAGGGGCCAAA+TGG | 0.432326 | 7_2:-30557496 | Msa1055640:intron |
| GAGAGGTTATACAGCGACTT+TGG | 0.437560 | 7_2:-30559201 | Msa1055640:CDS |
| GTACATCGACCAAAATAATA+GGG | 0.442338 | 7_2:+30557107 | None:intergenic |
| CTGGAACAGACGGTCCCATT+TGG | 0.443282 | 7_2:+30557481 | None:intergenic |
| CGGTACTCCAATAGCCCATA+TGG | 0.444157 | 7_2:+30559603 | None:intergenic |
| GCTAATGGAAACCTTGCTAA+TGG | 0.444916 | 7_2:-30557429 | Msa1055640:CDS |
| AATGACCAGAAACTTGCTAA+TGG | 0.446578 | 7_2:-30557444 | Msa1055640:CDS |
| ATTATGACTGTATACGCTGC+TGG | 0.453348 | 7_2:-30556950 | Msa1055640:three_prime_UTR |
| TAAGATCCGGTCTCTATTGA+AGG | 0.461421 | 7_2:-30557253 | Msa1055640:CDS |
| TACAAACTTTACAGAAGGTC+AGG | 0.466951 | 7_2:-30557171 | Msa1055640:CDS |
| TTTAATTGAAAGGGGTTTGG+TGG | 0.467015 | 7_2:-30559673 | Msa1055640:intron |
| TGAGAGCTAAATCGTTCTTA+CGG | 0.468390 | 7_2:+30561873 | None:intergenic |
| GAAACCGGTGTCGGTGGAAG+AGG | 0.475449 | 7_2:+30562054 | None:intergenic |
| AATTGTTATAGGGGCCAAAT+GGG | 0.477174 | 7_2:-30557495 | Msa1055640:intron |
| TTGAAAGTAACAGCTTGAGC+AGG | 0.482858 | 7_2:-30557377 | Msa1055640:CDS |
| AATGAGGAAATTGAGCTTCG+AGG | 0.485002 | 7_2:-30559487 | Msa1055640:CDS |
| GTCGTAAGCGTCGACGGTGC+CGG | 0.499013 | 7_2:+30562000 | None:intergenic |
| GTTGTGATGAAAGCTTCTGC+TGG | 0.503548 | 7_2:-30556880 | Msa1055640:three_prime_UTR |
| AAATGTGACCGATTGTTGCC+AGG | 0.511691 | 7_2:-30557349 | Msa1055640:CDS |
| ATTAACACCCTGGCAACAAT+CGG | 0.518280 | 7_2:+30557341 | None:intergenic |
| GGCGTGGTGGCCAGGAGAGG+TGG | 0.520926 | 7_2:+30561951 | None:intergenic |
| CTGCCTGTTCTCACCTGGGT+GGG | 0.524045 | 7_2:-30559441 | Msa1055640:CDS |
| CACGCTCCTTCAATAGAGAC+CGG | 0.524633 | 7_2:+30557247 | None:intergenic |
| TTGGTGAATGACAAACCATA+TGG | 0.540174 | 7_2:-30559618 | Msa1055640:CDS |
| CATATGGGCTATTGGAGTAC+CGG | 0.542705 | 7_2:-30559602 | Msa1055640:CDS |
| TGGTGAATGACAAACCATAT+GGG | 0.544388 | 7_2:-30559617 | Msa1055640:CDS |
| ACCGTCTGTTCCAGAAGTGA+AGG | 0.545620 | 7_2:-30557472 | Msa1055640:CDS |
| ACGCTTTATTGGTCTGTCAA+AGG | 0.548207 | 7_2:-30557034 | Msa1055640:three_prime_UTR |
| TAAGAACGATTTAGCTCTCA+AGG | 0.548880 | 7_2:-30561870 | Msa1055640:intron |
| CCCTTCACTTCTGGAACAGA+CGG | 0.550137 | 7_2:+30557471 | None:intergenic |
| GATGGTCGTCGGAAGCTTCG+AGG | 0.550714 | 7_2:+30561930 | None:intergenic |
| CGAGGCGTGGTGGCCAGGAG+AGG | 0.551412 | 7_2:+30561948 | None:intergenic |
| CACAGCTCCAAGCACACCAA+CGG | 0.557893 | 7_2:+30557212 | None:intergenic |
| AGGGCAAAAGCTGTAAGATC+CGG | 0.558031 | 7_2:-30557266 | Msa1055640:CDS |
| CGTTGGTGTGCTTGGAGCTG+TGG | 0.558144 | 7_2:-30557211 | Msa1055640:CDS |
| ATGTTAGATGTGGTACTTGT+GGG | 0.558414 | 7_2:-30559531 | Msa1055640:CDS |
| GCGAGTGAAACCGGTGTCGG+TGG | 0.561154 | 7_2:+30562048 | None:intergenic |
| AGGTTATACAGCGACTTTGG+AGG | 0.561414 | 7_2:-30559198 | Msa1055640:intron |
| TTATGACTGTATACGCTGCT+GGG | 0.562202 | 7_2:-30556949 | Msa1055640:three_prime_UTR |
| AACATAATCATATACAGTCC+AGG | 0.565629 | 7_2:-30559403 | Msa1055640:CDS |
| AATTGAGCTTCGAGGTCTGA+AGG | 0.566313 | 7_2:-30559479 | Msa1055640:CDS |
| GGAGAATCCATCTTCCTCAC+TGG | 0.568836 | 7_2:+30561752 | None:intergenic |
| TCGTCGGAAGCTTCGAGGCG+TGG | 0.575293 | 7_2:+30561935 | None:intergenic |
| TAGCTTACAAACTTTACAGA+AGG | 0.575315 | 7_2:-30557176 | Msa1055640:CDS |
| TGGCATGATCTCCATTAGCA+AGG | 0.576063 | 7_2:+30557418 | None:intergenic |
| GGTGTCGGTGGAAGAGGTAT+CGG | 0.577731 | 7_2:+30562060 | None:intergenic |
| CTTACGGGCTTTAAACGTGT+CGG | 0.582530 | 7_2:+30561889 | None:intergenic |
| TCGGCGACGAGTTTGGGAAG+AGG | 0.585120 | 7_2:+30561908 | None:intergenic |
| TGGGTGGGCACAAGTATGCT+GGG | 0.588589 | 7_2:-30559426 | Msa1055640:CDS |
| GTGACGGTCGTAAGCGTCGA+CGG | 0.592466 | 7_2:+30561994 | None:intergenic |
| TGTGAAGCCAGTGAGGAAGA+TGG | 0.595448 | 7_2:-30561759 | Msa1055640:CDS |
| CGTGAAATTCTCACAGCCGT+TGG | 0.599346 | 7_2:-30557228 | Msa1055640:CDS |
| AATCATATACAGTCCAGGAC+CGG | 0.600958 | 7_2:-30559398 | Msa1055640:CDS |
| TGAAAGTAACAGCTTGAGCA+GGG | 0.608838 | 7_2:-30557376 | Msa1055640:CDS |
| AGGGCGAGTGAAACCGGTGT+CGG | 0.609361 | 7_2:+30562045 | None:intergenic |
| GATACCTCTTCCACCGACAC+CGG | 0.612591 | 7_2:-30562058 | Msa1055640:CDS |
| AATGTGACCGATTGTTGCCA+GGG | 0.614545 | 7_2:-30557348 | Msa1055640:CDS |
| TGGTGTGCTTGGAGCTGTGG+CGG | 0.621220 | 7_2:-30557208 | Msa1055640:CDS |
| CGACGAGTTTGGGAAGAGGA+TGG | 0.621819 | 7_2:+30561912 | None:intergenic |
| ACTGCCTGTTCTCACCTGGG+TGG | 0.624663 | 7_2:-30559442 | Msa1055640:CDS |
| GAGGAAGATGGATTCTCCGA+CGG | 0.627284 | 7_2:-30561747 | Msa1055640:CDS |
| CAGCATACTTGTGCCCACCC+AGG | 0.628088 | 7_2:+30559428 | None:intergenic |
| GATGTTAGATGTGGTACTTG+TGG | 0.628165 | 7_2:-30559532 | Msa1055640:CDS |
| CCAACATATTGCAAAAGGAG+AGG | 0.631853 | 7_2:-30559218 | Msa1055640:CDS |
| TCGGAAGCTTCGAGGCGTGG+TGG | 0.636893 | 7_2:+30561938 | None:intergenic |
| GTCGGTGGAAGAGGTATCGG+AGG | 0.637915 | 7_2:+30562063 | None:intergenic |
| ATGGGCTATTGGAGTACCGG+AGG | 0.638764 | 7_2:-30559599 | Msa1055640:intron |
| CCGTCTGTTCCAGAAGTGAA+GGG | 0.644749 | 7_2:-30557471 | Msa1055640:CDS |
| GAAAATCAAAACGTCACCGT+CGG | 0.648268 | 7_2:+30561731 | None:intergenic |
| TTTGGGAAGAGGATGGTCGT+CGG | 0.656732 | 7_2:+30561919 | None:intergenic |
| TGTAGTAGAGGAAAACGTGA+CGG | 0.664243 | 7_2:+30561978 | None:intergenic |
| ATATACAGTCCAGGACCGGA+CGG | 0.667024 | 7_2:-30559394 | Msa1055640:CDS |
| AAGTACCACATCTAACATCA+CGG | 0.668565 | 7_2:+30559536 | None:intergenic |
| AAGAAACTCCATTAACACCC+TGG | 0.672432 | 7_2:+30557331 | None:intergenic |
| CACTGTGTGTGAAGCCAGTG+AGG | 0.681588 | 7_2:-30561766 | Msa1055640:CDS |
| GGAAGCCGTGATGTTAGATG+TGG | 0.713083 | 7_2:-30559541 | Msa1055640:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AACTGATTATTTTATTAAAA+AGG | + | chr7_2:30557442-30557461 | None:intergenic | 10.0% |
| !! | TTAAAAAAGTGATTATTATT+CGG | - | chr7_2:30557660-30557679 | Msa1055640:intron | 10.0% |
| !!! | TTTTCAAAATTAAAAAATTG+TGG | + | chr7_2:30558077-30558096 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTTTTTAAACAA+AGG | + | chr7_2:30558824-30558843 | None:intergenic | 10.0% |
| !! | TTAATGAAATGAAAATTTAA+AGG | - | chr7_2:30559838-30559857 | Msa1055640:intron | 10.0% |
| !! | AATAATATATATTAAATGTC+TGG | + | chr7_2:30560759-30560778 | None:intergenic | 10.0% |
| !! | AAATACATATTTGAATATAA+TGG | - | chr7_2:30561080-30561099 | Msa1055640:intron | 10.0% |
| !! | AATACATATTTGAATATAAT+GGG | - | chr7_2:30561081-30561100 | Msa1055640:intron | 10.0% |
| !!! | TTTTTTCTTAATTTTTACAA+CGG | - | chr7_2:30561432-30561451 | Msa1055640:intron | 10.0% |
| !! | AAACTTATTTAAATTGTTAT+AGG | - | chr7_2:30561474-30561493 | Msa1055640:intron | 10.0% |
| !! | AACTTATTTAAATTGTTATA+GGG | - | chr7_2:30561475-30561494 | Msa1055640:intron | 10.0% |
| !!! | CTATTTTTATTTATTTATGG+TGG | - | chr7_2:30557337-30557356 | Msa1055640:CDS | 15.0% |
| !! | TTTAAAAAACTATAACTAAC+TGG | + | chr7_2:30557407-30557426 | None:intergenic | 15.0% |
| !! | TTAGATACAAGTATATAAAA+TGG | + | chr7_2:30557620-30557639 | None:intergenic | 15.0% |
| !! | TAAAAAAGTGATTATTATTC+GGG | - | chr7_2:30557661-30557680 | Msa1055640:intron | 15.0% |
| !!! | TTTTTATGTTGGTAAATTAA+AGG | + | chr7_2:30557793-30557812 | None:intergenic | 15.0% |
| !! | TCAATTAAAGAAATGAAAAT+TGG | + | chr7_2:30559296-30559315 | None:intergenic | 15.0% |
| !!! | TTTTCATTTCTTTAATTGAA+AGG | - | chr7_2:30559297-30559316 | Msa1055640:intron | 15.0% |
| !! | TTTCATTTCTTTAATTGAAA+GGG | - | chr7_2:30559298-30559317 | Msa1055640:intron | 15.0% |
| !! | TATTTAATCATAATCCTAAT+GGG | + | chr7_2:30560038-30560057 | None:intergenic | 15.0% |
| !! | TTATTTAATCATAATCCTAA+TGG | + | chr7_2:30560039-30560058 | None:intergenic | 15.0% |
| !! | GATTATGATTAAATAATTAG+AGG | - | chr7_2:30560043-30560062 | Msa1055640:intron | 15.0% |
| !!! | TTCTCTTTATTTGTATATAA+AGG | - | chr7_2:30560091-30560110 | Msa1055640:intron | 15.0% |
| !!! | TCTCTTTATTTGTATATAAA+GGG | - | chr7_2:30560092-30560111 | Msa1055640:intron | 15.0% |
| !! | GTTGTAAAAATTAAGAAAAA+AGG | + | chr7_2:30561433-30561452 | None:intergenic | 15.0% |
| !! | ACTTATTTAAATTGTTATAG+GGG | - | chr7_2:30561476-30561495 | Msa1055640:intron | 15.0% |
| !! | TGAAATGAAAAAGAAATGAA+AGG | + | chr7_2:30556869-30556888 | None:intergenic | 20.0% |
| !!! | TTATTTTAATCCGTAACAAA+CGG | - | chr7_2:30557766-30557785 | Msa1055640:intron | 20.0% |
| !!! | TAAAAATCACGTTTTTATGT+TGG | + | chr7_2:30557804-30557823 | None:intergenic | 20.0% |
| !!! | AAGTTTCTGTATAATTTTGA+TGG | + | chr7_2:30557968-30557987 | None:intergenic | 20.0% |
| !! | TTCAAAATAGGTTATCATTA+AGG | - | chr7_2:30558136-30558155 | Msa1055640:intron | 20.0% |
| !!! | TTTTCCTACGATTTTTTTTT+GGG | + | chr7_2:30558184-30558203 | None:intergenic | 20.0% |
| !! | GAAAGTTTCTAATGAAAAAT+TGG | + | chr7_2:30558241-30558260 | None:intergenic | 20.0% |
| !! | TAAAAAAATCTATGACAAAC+AGG | - | chr7_2:30558324-30558343 | Msa1055640:intron | 20.0% |
| !! | TGTTATATGATTCTATGTTT+CGG | - | chr7_2:30558373-30558392 | Msa1055640:intron | 20.0% |
| !! | TTAATATGAAACTAACTGTA+TGG | - | chr7_2:30558427-30558446 | Msa1055640:intron | 20.0% |
| !! | AAAACAAAGATACAAAAAGA+TGG | + | chr7_2:30558751-30558770 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTTTCATGTTTG+TGG | - | chr7_2:30558837-30558856 | Msa1055640:intron | 20.0% |
| !!! | AAAAAGATTTTCATGTTTGT+GGG | - | chr7_2:30558838-30558857 | Msa1055640:intron | 20.0% |
| !!! | CTAGCTTTAAATTAGAAATT+AGG | - | chr7_2:30558917-30558936 | Msa1055640:intron | 20.0% |
| !! | TTCATTTCTTTAATTGAAAG+GGG | - | chr7_2:30559299-30559318 | Msa1055640:intron | 20.0% |
| !! | TTAAAATTATTGATGAGAAC+TGG | + | chr7_2:30559475-30559494 | None:intergenic | 20.0% |
| !!! | TCTCATCAATAATTTTAATG+AGG | - | chr7_2:30559477-30559496 | Msa1055640:CDS | 20.0% |
| !! | ACATACTAATAATTGTTTAC+AGG | - | chr7_2:30559698-30559717 | Msa1055640:intron | 20.0% |
| !!! | ATTCTTATAGAAGTATTTAC+TGG | - | chr7_2:30559910-30559929 | Msa1055640:intron | 20.0% |
| !! | TTAAGTAGATTATTAGTAAG+TGG | - | chr7_2:30560012-30560031 | Msa1055640:intron | 20.0% |
| !!! | CTCTTTATTTGTATATAAAG+GGG | - | chr7_2:30560093-30560112 | Msa1055640:intron | 20.0% |
| !! | TGGTAATTAAGGAAAAAAAA+GGG | + | chr7_2:30560274-30560293 | None:intergenic | 20.0% |
| !! | ATGGTAATTAAGGAAAAAAA+AGG | + | chr7_2:30560275-30560294 | None:intergenic | 20.0% |
| !! | TAGACTTACAAAAATGATAA+TGG | - | chr7_2:30560361-30560380 | Msa1055640:intron | 20.0% |
| !! | TGGTATCAATAAGTTATAAT+AGG | - | chr7_2:30560524-30560543 | Msa1055640:intron | 20.0% |
| !! | TCAGATAATAATCATAACAA+AGG | + | chr7_2:30561271-30561290 | None:intergenic | 20.0% |
| ! | GAAAAAGAAATGAAAGGAAA+GGG | + | chr7_2:30556863-30556882 | None:intergenic | 25.0% |
| ! | TGAAAAAGAAATGAAAGGAA+AGG | + | chr7_2:30556864-30556883 | None:intergenic | 25.0% |
| ! | AAACTTCTGTCAATTGATAA+AGG | - | chr7_2:30557982-30558001 | Msa1055640:intron | 25.0% |
| ! | TGAGAAGCTATATTCAAAAT+AGG | - | chr7_2:30558124-30558143 | Msa1055640:intron | 25.0% |
| !!! | CTTTTCCTACGATTTTTTTT+TGG | + | chr7_2:30558185-30558204 | None:intergenic | 25.0% |
| ! | CAAAAAAAAATCGTAGGAAA+AGG | - | chr7_2:30558183-30558202 | Msa1055640:intron | 25.0% |
| ! | ACTTGCTCATAATAGATTAA+GGG | + | chr7_2:30558350-30558369 | None:intergenic | 25.0% |
| ! | TACTTGCTCATAATAGATTA+AGG | + | chr7_2:30558351-30558370 | None:intergenic | 25.0% |
| !!! | ATTTTCATGTTTGGTTTTCT+TGG | - | chr7_2:30558450-30558469 | Msa1055640:intron | 25.0% |
| ! | TCAATGTCTCTCATATATAT+AGG | - | chr7_2:30558554-30558573 | Msa1055640:intron | 25.0% |
| ! | CAATGTCTCTCATATATATA+GGG | - | chr7_2:30558555-30558574 | Msa1055640:intron | 25.0% |
| ! | AGACTGGATTTCTTAATTAT+AGG | - | chr7_2:30558683-30558702 | Msa1055640:intron | 25.0% |
| ! | TCTTCTTATGATATATTTCC+TGG | - | chr7_2:30558772-30558791 | Msa1055640:intron | 25.0% |
| ! | CTTCTTATGATATATTTCCT+GGG | - | chr7_2:30558773-30558792 | Msa1055640:intron | 25.0% |
| ! | TTCTTATGATATATTTCCTG+GGG | - | chr7_2:30558774-30558793 | Msa1055640:intron | 25.0% |
| ! | ATATTTCTTTGACTGCATAT+TGG | - | chr7_2:30558947-30558966 | Msa1055640:intron | 25.0% |
| ! | ATGTGATTACATTAAATCAC+TGG | - | chr7_2:30559017-30559036 | Msa1055640:intron | 25.0% |
| !!! | TGGTTTTCTCAAGTTATTTT+TGG | - | chr7_2:30559037-30559056 | Msa1055640:intron | 25.0% |
| !! | TCGTGTTTCTATGTTAAATT+TGG | - | chr7_2:30559207-30559226 | Msa1055640:CDS | 25.0% |
| ! | AAATGATTCAAAATTTGAGG+TGG | + | chr7_2:30559654-30559673 | None:intergenic | 25.0% |
| ! | CTAATAATTGTTTACAGGTA+CGG | - | chr7_2:30559703-30559722 | Msa1055640:intron | 25.0% |
| ! | AGTAAATCAGGAATATCATT+AGG | + | chr7_2:30559739-30559758 | None:intergenic | 25.0% |
| ! | AGTAATTAGTAGGTATTAGT+TGG | - | chr7_2:30559988-30560007 | Msa1055640:intron | 25.0% |
| ! | GGTAATTAAGGAAAAAAAAG+GGG | + | chr7_2:30560273-30560292 | None:intergenic | 25.0% |
| ! | AATTAATAGTAACACAACCA+AGG | + | chr7_2:30560313-30560332 | None:intergenic | 25.0% |
| !! | TTGTGTTACTATTAATTCGT+TGG | - | chr7_2:30560316-30560335 | Msa1055640:intron | 25.0% |
| !! | CATTTTTGTAAGTCTATGAT+AGG | + | chr7_2:30560357-30560376 | None:intergenic | 25.0% |
| ! | GGAGAAAAAAAAAATTGAGA+TGG | + | chr7_2:30560485-30560504 | None:intergenic | 25.0% |
| ! | ACTTATTGATACCAACAAAA+TGG | + | chr7_2:30560518-30560537 | None:intergenic | 25.0% |
| !!! | AGTTTAAGTTTTTCCAGTTA+TGG | - | chr7_2:30560588-30560607 | Msa1055640:intron | 25.0% |
| !!! | GTTTAAGTTTTTCCAGTTAT+GGG | - | chr7_2:30560589-30560608 | Msa1055640:intron | 25.0% |
| ! | AAATGCTTATAACCAAACTA+AGG | + | chr7_2:30560623-30560642 | None:intergenic | 25.0% |
| ! | AATTAGCTATGAGAAATACT+TGG | + | chr7_2:30560647-30560666 | None:intergenic | 25.0% |
| ! | AAGTATTTCTCATAGCTAAT+TGG | - | chr7_2:30560646-30560665 | Msa1055640:intron | 25.0% |
| !!! | GCTCAACTATTTCTATTTTA+TGG | + | chr7_2:30560737-30560756 | None:intergenic | 25.0% |
| ! | ATACGATTCAATTTAGTACA+AGG | + | chr7_2:30561046-30561065 | None:intergenic | 25.0% |
| ! | GTACTAAATTGAATCGTATA+TGG | - | chr7_2:30561047-30561066 | Msa1055640:intron | 25.0% |
| ! | TTAGTTATGAACAACATTTC+AGG | - | chr7_2:30561141-30561160 | Msa1055640:intron | 25.0% |
| !!! | GTTTTACCATTTTTAACCAA+AGG | - | chr7_2:30561325-30561344 | Msa1055640:intron | 25.0% |
| ! | AATATTCTTCTCGATCTTAT+TGG | + | chr7_2:30561585-30561604 | None:intergenic | 25.0% |
| ! | AAAAAAAGACGAGATTAAAG+AGG | - | chr7_2:30561694-30561713 | Msa1055640:intron | 25.0% |
| ! | AAAAAAGACGAGATTAAAGA+GGG | - | chr7_2:30561695-30561714 | Msa1055640:intron | 25.0% |
| !!! | AACTTGTTATAGGTTTTTTG+TGG | - | chr7_2:30561849-30561868 | Msa1055640:intron | 25.0% |
| AAATTTCGACACTCGTTATT+AGG | - | chr7_2:30557301-30557320 | Msa1055640:CDS | 30.0% | |
| AATTTCGACACTCGTTATTA+GGG | - | chr7_2:30557302-30557321 | Msa1055640:CDS | 30.0% | |
| AAATTGCTTCAGTGTATTGA+TGG | - | chr7_2:30557363-30557382 | Msa1055640:CDS | 30.0% | |
| ! | AATTAAAGGACCGTTTGTTA+CGG | + | chr7_2:30557779-30557798 | None:intergenic | 30.0% |
| GAATCTCATTTGAACTCATT+TGG | - | chr7_2:30557851-30557870 | Msa1055640:intron | 30.0% | |
| TAAAAAATTGTGGTTCCTCT+TGG | + | chr7_2:30558067-30558086 | None:intergenic | 30.0% | |
| ATCACCCAAAAAAAAATCGT+AGG | - | chr7_2:30558177-30558196 | Msa1055640:intron | 30.0% | |
| ! | ACTGTATGGATTTTCATGTT+TGG | - | chr7_2:30558441-30558460 | Msa1055640:intron | 30.0% |
| AGTCTTCAAAAATTGTTCCT+TGG | - | chr7_2:30558479-30558498 | Msa1055640:intron | 30.0% | |
| !! | ACTGTTTGTTTCTCTTTTCT+AGG | - | chr7_2:30558524-30558543 | Msa1055640:intron | 30.0% |
| ACATTGTTGAACCAAGAATA+AGG | + | chr7_2:30558628-30558647 | None:intergenic | 30.0% | |
| AGGTCAATGTTGAATTTGTA+AGG | - | chr7_2:30558656-30558675 | Msa1055640:intron | 30.0% | |
| GAATTTGTAAGGAATAAGAC+TGG | - | chr7_2:30558667-30558686 | Msa1055640:intron | 30.0% | |
| AAAGATACAAAAAGATGGAG+GGG | + | chr7_2:30558746-30558765 | None:intergenic | 30.0% | |
| CAAAGATACAAAAAGATGGA+GGG | + | chr7_2:30558747-30558766 | None:intergenic | 30.0% | |
| ACAAAGATACAAAAAGATGG+AGG | + | chr7_2:30558748-30558767 | None:intergenic | 30.0% | |
| !!! | TTGTATATTTTGAGACCGAA+TGG | - | chr7_2:30559139-30559158 | Msa1055640:intron | 30.0% |
| AAAAACCTTGAAACTCCATT+CGG | + | chr7_2:30559157-30559176 | None:intergenic | 30.0% | |
| ! | ATTGATGAATGAGGGTTTTT+GGG | - | chr7_2:30559235-30559254 | Msa1055640:CDS | 30.0% |
| TTCTTTAATTGAAAGGGGTT+TGG | - | chr7_2:30559304-30559323 | Msa1055640:intron | 30.0% | |
| !!! | GAGCTTTTTTGAAGATGTTT+TGG | - | chr7_2:30559343-30559362 | Msa1055640:intron | 30.0% |
| AACATAATCATATACAGTCC+AGG | - | chr7_2:30559577-30559596 | Msa1055640:intron | 30.0% | |
| GCGAAATGATTCAAAATTTG+AGG | + | chr7_2:30559657-30559676 | None:intergenic | 30.0% | |
| ATATGTTGGTCAAGTAAATC+AGG | + | chr7_2:30559751-30559770 | None:intergenic | 30.0% | |
| !! | GGGTGTTTTAAGTAATTAGT+AGG | - | chr7_2:30559978-30559997 | Msa1055640:intron | 30.0% |
| GTATATAAAGGGGAATTCTT+AGG | - | chr7_2:30560103-30560122 | Msa1055640:intron | 30.0% | |
| ! | ACGGAATAAGTTTTCTCTTT+AGG | - | chr7_2:30560140-30560159 | Msa1055640:intron | 30.0% |
| ! | CGGAATAAGTTTTCTCTTTA+GGG | - | chr7_2:30560141-30560160 | Msa1055640:intron | 30.0% |
| GATGAAACAGATGGTAATTA+AGG | + | chr7_2:30560285-30560304 | None:intergenic | 30.0% | |
| GTTACTATTAATTCGTTGGT+AGG | - | chr7_2:30560320-30560339 | Msa1055640:intron | 30.0% | |
| CAACAAAATGGACAAAAGAT+AGG | + | chr7_2:30560506-30560525 | None:intergenic | 30.0% | |
| ! | CTATCTTTTGTCCATTTTGT+TGG | - | chr7_2:30560504-30560523 | Msa1055640:intron | 30.0% |
| CTGGAAAAACTTAAACTCAA+GGG | + | chr7_2:30560585-30560604 | None:intergenic | 30.0% | |
| ACTGGAAAAACTTAAACTCA+AGG | + | chr7_2:30560586-30560605 | None:intergenic | 30.0% | |
| TTCGACAAAGTCAATGAAAT+GGG | + | chr7_2:30560702-30560721 | None:intergenic | 30.0% | |
| ATTCGACAAAGTCAATGAAA+TGG | + | chr7_2:30560703-30560722 | None:intergenic | 30.0% | |
| !! | CATTCTGATTTGGTATTGAA+TGG | - | chr7_2:30560809-30560828 | Msa1055640:intron | 30.0% |
| ACAAGCAGTATATTTCTTCA+AGG | + | chr7_2:30560840-30560859 | None:intergenic | 30.0% | |
| TGAAGAAATATACTGCTTGT+CGG | - | chr7_2:30560840-30560859 | Msa1055640:intron | 30.0% | |
| ! | TGTTGCCAATCTTTGAAAAA+TGG | - | chr7_2:30560957-30560976 | Msa1055640:intron | 30.0% |
| !! | CTAGACCATTTTTCAAAGAT+TGG | + | chr7_2:30560965-30560984 | None:intergenic | 30.0% |
| ! | TCTTTGATTTAGCAGCTATT+AGG | + | chr7_2:30561179-30561198 | None:intergenic | 30.0% |
| AATAGCTGCTAAATCAAAGA+TGG | - | chr7_2:30561179-30561198 | Msa1055640:intron | 30.0% | |
| TGCTAAATCAAAGATGGTTA+TGG | - | chr7_2:30561185-30561204 | Msa1055640:intron | 30.0% | |
| TAAAAATGGTAAAACCAGCA+TGG | + | chr7_2:30561320-30561339 | None:intergenic | 30.0% | |
| !! | TTACCATTTTTAACCAAAGG+AGG | - | chr7_2:30561328-30561347 | Msa1055640:intron | 30.0% |
| !!! | TTAATCTCGTCTTTTTTTGC+AGG | + | chr7_2:30561692-30561711 | None:intergenic | 30.0% |
| TAGCTTACAAACTTTACAGA+AGG | - | chr7_2:30561804-30561823 | Msa1055640:intron | 30.0% | |
| !! | AAGCTCTGATAACTTGTTAT+AGG | - | chr7_2:30561839-30561858 | Msa1055640:intron | 30.0% |
| ! | TTTTGTGGACCCTATTATTT+TGG | - | chr7_2:30561864-30561883 | Msa1055640:intron | 30.0% |
| GTACATCGACCAAAATAATA+GGG | + | chr7_2:30561876-30561895 | None:intergenic | 30.0% | |
| TGTACATCGACCAAAATAAT+AGG | + | chr7_2:30561877-30561896 | None:intergenic | 30.0% | |
| CTCTCTTCTCTTCATTTCAA+TGG | - | chr7_2:30556894-30556913 | Msa1055640:three_prime_UTR | 35.0% | |
| !! | GTTTTTCGGTGTACATTTCA+GGG | + | chr7_2:30556957-30556976 | None:intergenic | 35.0% |
| !! | AGTTTTTCGGTGTACATTTC+AGG | + | chr7_2:30556958-30556977 | None:intergenic | 35.0% |
| TGAGAGCTAAATCGTTCTTA+CGG | + | chr7_2:30557110-30557129 | None:intergenic | 35.0% | |
| !! | TAAGAACGATTTAGCTCTCA+AGG | - | chr7_2:30557110-30557129 | Msa1055640:three_prime_UTR | 35.0% |
| ACCTGTATTTAACCATTTCC+GGG | + | chr7_2:30557274-30557293 | None:intergenic | 35.0% | |
| GACCTGTATTTAACCATTTC+CGG | + | chr7_2:30557275-30557294 | None:intergenic | 35.0% | |
| !! | ATAACGAGTGTCGAAATTTG+AGG | + | chr7_2:30557300-30557319 | None:intergenic | 35.0% |
| !! | TAACTAACTGGCTCTAAACT+TGG | + | chr7_2:30557395-30557414 | None:intergenic | 35.0% |
| !! | TAATTTTGATGGCCCAACAT+TGG | + | chr7_2:30557957-30557976 | None:intergenic | 35.0% |
| ACATGTTATAGTTCGCCTAA+CGG | - | chr7_2:30558023-30558042 | Msa1055640:intron | 35.0% | |
| AAACACCCATATTAACCGTT+AGG | + | chr7_2:30558041-30558060 | None:intergenic | 35.0% | |
| TGTCTCTCATATATATAGGG+AGG | - | chr7_2:30558558-30558577 | Msa1055640:intron | 35.0% | |
| GTCTCTCATATATATAGGGA+GGG | - | chr7_2:30558559-30558578 | Msa1055640:intron | 35.0% | |
| GCTTAACTACTCCTTATTCT+TGG | - | chr7_2:30558614-30558633 | Msa1055640:intron | 35.0% | |
| GTTCAACAATGTTTCTTCTC+AGG | - | chr7_2:30558636-30558655 | Msa1055640:intron | 35.0% | |
| AAGATACAAAAAGATGGAGG+GGG | + | chr7_2:30558745-30558764 | None:intergenic | 35.0% | |
| TTATGATATATTTCCTGGGG+TGG | - | chr7_2:30558777-30558796 | Msa1055640:intron | 35.0% | |
| CATAGACACAAACATGGAAA+GGG | + | chr7_2:30559090-30559109 | None:intergenic | 35.0% | |
| ATGAAGCATAGACACAAACA+TGG | + | chr7_2:30559096-30559115 | None:intergenic | 35.0% | |
| TGTTTGTGTCTATGCTTCAT+AGG | - | chr7_2:30559096-30559115 | Msa1055640:intron | 35.0% | |
| ! | TTGGTCTTCATTGATGAATG+AGG | - | chr7_2:30559226-30559245 | Msa1055640:CDS | 35.0% |
| TGGTCTTCATTGATGAATGA+GGG | - | chr7_2:30559227-30559246 | Msa1055640:CDS | 35.0% | |
| ! | CATTGATGAATGAGGGTTTT+TGG | - | chr7_2:30559234-30559253 | Msa1055640:CDS | 35.0% |
| TTTAATTGAAAGGGGTTTGG+TGG | - | chr7_2:30559307-30559326 | Msa1055640:intron | 35.0% | |
| TTGGTGAATGACAAACCATA+TGG | - | chr7_2:30559362-30559381 | Msa1055640:intron | 35.0% | |
| TGGTGAATGACAAACCATAT+GGG | - | chr7_2:30559363-30559382 | Msa1055640:intron | 35.0% | |
| AAGTACCACATCTAACATCA+CGG | + | chr7_2:30559447-30559466 | None:intergenic | 35.0% | |
| ATGTTAGATGTGGTACTTGT+GGG | - | chr7_2:30559449-30559468 | Msa1055640:CDS | 35.0% | |
| TTGAATCATTTCGCTGTTGT+TGG | - | chr7_2:30559663-30559682 | Msa1055640:CDS | 35.0% | |
| CTTGACCAACATATTGCAAA+AGG | - | chr7_2:30559757-30559776 | Msa1055640:intron | 35.0% | |
| !! | ACTGGTTTGTTACTGAACTA+TGG | - | chr7_2:30559928-30559947 | Msa1055640:intron | 35.0% |
| TTAAAACACCCTCTCATACT+AGG | + | chr7_2:30559969-30559988 | None:intergenic | 35.0% | |
| TTATTAGTAAGTGGCCCATT+AGG | - | chr7_2:30560021-30560040 | Msa1055640:intron | 35.0% | |
| AAGGAAGAAGATGAAACAGA+TGG | + | chr7_2:30560294-30560313 | None:intergenic | 35.0% | |
| ATCTGTTTCATCTTCTTCCT+TGG | - | chr7_2:30560293-30560312 | Msa1055640:intron | 35.0% | |
| CTCATAGCTAATTGGAAACA+AGG | - | chr7_2:30560654-30560673 | Msa1055640:intron | 35.0% | |
| GGTTATAGAAACGCTGTTAT+AGG | + | chr7_2:30560783-30560802 | None:intergenic | 35.0% | |
| GAAGAAATATACTGCTTGTC+GGG | - | chr7_2:30560841-30560860 | Msa1055640:intron | 35.0% | |
| AGAAGAGAGAAGTTACAGAT+TGG | + | chr7_2:30560890-30560909 | None:intergenic | 35.0% | |
| AAGGCAGAAAACAAAATGAG+TGG | + | chr7_2:30561027-30561046 | None:intergenic | 35.0% | |
| ATTTCCTTTATAAGCCATGC+TGG | - | chr7_2:30561303-30561322 | Msa1055640:intron | 35.0% | |
| AAAACCAGCATGGCTTATAA+AGG | + | chr7_2:30561310-30561329 | None:intergenic | 35.0% | |
| TTGCCTCCTTTGGTTAAAAA+TGG | + | chr7_2:30561334-30561353 | None:intergenic | 35.0% | |
| TGACTAACTAGCATCATAGA+TGG | + | chr7_2:30561385-30561404 | None:intergenic | 35.0% | |
| AAATTGTTATAGGGGCCAAA+TGG | - | chr7_2:30561484-30561503 | Msa1055640:intron | 35.0% | |
| AATTGTTATAGGGGCCAAAT+GGG | - | chr7_2:30561485-30561504 | Msa1055640:intron | 35.0% | |
| !! | AATGACCAGAAACTTGCTAA+TGG | - | chr7_2:30561536-30561555 | Msa1055640:intron | 35.0% |
| TACAAACTTTACAGAAGGTC+AGG | - | chr7_2:30561809-30561828 | Msa1055640:intron | 35.0% | |
| GACTTACATAGACGCTTTAT+TGG | - | chr7_2:30561935-30561954 | Msa1055640:CDS | 35.0% | |
| TGTAGTAGAGGAAAACGTGA+CGG | + | chr7_2:30557005-30557024 | None:intergenic | 40.0% | |
| ! | AGAGGTGGTTTTTGTAGTAG+AGG | + | chr7_2:30557017-30557036 | None:intergenic | 40.0% |
| GAGAGCTAAATCGTTCTTAC+GGG | + | chr7_2:30557109-30557128 | None:intergenic | 40.0% | |
| GAAAATCAAAACGTCACCGT+CGG | + | chr7_2:30557252-30557271 | None:intergenic | 40.0% | |
| !!! | CGTTTTGATTTTCCCGGAAA+TGG | - | chr7_2:30557259-30557278 | Msa1055640:CDS | 40.0% |
| TCCCGGAAATGGTTAAATAC+AGG | - | chr7_2:30557270-30557289 | Msa1055640:CDS | 40.0% | |
| ! | ACAAGCCGTCTCAAACATTT+TGG | - | chr7_2:30557907-30557926 | Msa1055640:intron | 40.0% |
| ! | CAAGCCGTCTCAAACATTTT+GGG | - | chr7_2:30557908-30557927 | Msa1055640:intron | 40.0% |
| ACATTGGAACAAGGCTCAAA+TGG | + | chr7_2:30557941-30557960 | None:intergenic | 40.0% | |
| !! | TTTGAGCCTTGTTCCAATGT+TGG | - | chr7_2:30557941-30557960 | Msa1055640:intron | 40.0% |
| !! | TTGAGCCTTGTTCCAATGTT+GGG | - | chr7_2:30557942-30557961 | Msa1055640:intron | 40.0% |
| AGTTCGCCTAACGGTTAATA+TGG | - | chr7_2:30558032-30558051 | Msa1055640:intron | 40.0% | |
| GTTCGCCTAACGGTTAATAT+GGG | - | chr7_2:30558033-30558052 | Msa1055640:intron | 40.0% | |
| !! | ATATGGGTGTTTTTGCCAAG+AGG | - | chr7_2:30558049-30558068 | Msa1055640:intron | 40.0% |
| AAATTGTTCCTTGGTCTCGT+AGG | - | chr7_2:30558488-30558507 | Msa1055640:intron | 40.0% | |
| TAATCATTGTGCAGACCAAC+TGG | - | chr7_2:30558582-30558601 | Msa1055640:intron | 40.0% | |
| ! | TTAAGCCTAGATTAGCCAGT+TGG | + | chr7_2:30558600-30558619 | None:intergenic | 40.0% |
| AGATACAAAAAGATGGAGGG+GGG | + | chr7_2:30558744-30558763 | None:intergenic | 40.0% | |
| TTTGTGGGTCAACTTGCAAA+TGG | - | chr7_2:30558853-30558872 | Msa1055640:intron | 40.0% | |
| ! | TGACTGTGCTGTAAAAGTGT+CGG | + | chr7_2:30558996-30559015 | None:intergenic | 40.0% |
| GCATAGACACAAACATGGAA+AGG | + | chr7_2:30559091-30559110 | None:intergenic | 40.0% | |
| ! | TGACAAACCATATGGGCTAT+TGG | - | chr7_2:30559370-30559389 | Msa1055640:intron | 40.0% |
| TGTGAACCAGTTAAAACCTC+CGG | + | chr7_2:30559400-30559419 | None:intergenic | 40.0% | |
| CATGTCTATGTATGTGCTCA+TGG | - | chr7_2:30559418-30559437 | Msa1055640:CDS | 40.0% | |
| GATGTTAGATGTGGTACTTG+TGG | - | chr7_2:30559448-30559467 | Msa1055640:CDS | 40.0% | |
| AATGAGGAAATTGAGCTTCG+AGG | - | chr7_2:30559493-30559512 | Msa1055640:CDS | 40.0% | |
| AATCATATACAGTCCAGGAC+CGG | - | chr7_2:30559582-30559601 | Msa1055640:intron | 40.0% | |
| ! | CCTCTCCTTTTGCAATATGT+TGG | + | chr7_2:30559765-30559784 | None:intergenic | 40.0% |
| CCAACATATTGCAAAAGGAG+AGG | - | chr7_2:30559762-30559781 | Msa1055640:intron | 40.0% | |
| GAACTATGGTGTAGACTGTT+AGG | - | chr7_2:30559942-30559961 | Msa1055640:intron | 40.0% | |
| TGTTAGGACCTAGTATGAGA+GGG | - | chr7_2:30559958-30559977 | Msa1055640:intron | 40.0% | |
| ATTCTTAGGAGTCTTGGAGT+AGG | - | chr7_2:30560117-30560136 | Msa1055640:intron | 40.0% | |
| GTAAGACGGTAATAAGGATG+GGG | + | chr7_2:30560428-30560447 | None:intergenic | 40.0% | |
| GGTAAGACGGTAATAAGGAT+GGG | + | chr7_2:30560429-30560448 | None:intergenic | 40.0% | |
| AGGTAAGACGGTAATAAGGA+TGG | + | chr7_2:30560430-30560449 | None:intergenic | 40.0% | |
| TGAGAGGTAAGACGGTAATA+AGG | + | chr7_2:30560434-30560453 | None:intergenic | 40.0% | |
| TCCATAGTTGAGAGGTAAGA+CGG | + | chr7_2:30560442-30560461 | None:intergenic | 40.0% | |
| TCTTACCTCTCAACTATGGA+TGG | - | chr7_2:30560442-30560461 | Msa1055640:intron | 40.0% | |
| TCAAACCATCCATAGTTGAG+AGG | + | chr7_2:30560450-30560469 | None:intergenic | 40.0% | |
| ! | AAGGTACTTCTTCCCATAAC+TGG | + | chr7_2:30560604-30560623 | None:intergenic | 40.0% |
| !! | TGGGAAGAAGTACCTTAGTT+TGG | - | chr7_2:30560608-30560627 | Msa1055640:intron | 40.0% |
| AACCATCGTGCATTCTGATT+TGG | - | chr7_2:30560799-30560818 | Msa1055640:intron | 40.0% | |
| TACCAAATCAGAATGCACGA+TGG | + | chr7_2:30560804-30560823 | None:intergenic | 40.0% | |
| ACCGTTGTATTCCTTCATCT+CGG | - | chr7_2:30561108-30561127 | Msa1055640:intron | 40.0% | |
| GGTTTCCATTAGCAAGTTTC+TGG | + | chr7_2:30561544-30561563 | None:intergenic | 40.0% | |
| GCTAATGGAAACCTTGCTAA+TGG | - | chr7_2:30561551-30561570 | Msa1055640:intron | 40.0% | |
| TTGAAAGTAACAGCTTGAGC+AGG | - | chr7_2:30561603-30561622 | Msa1055640:intron | 40.0% | |
| TGAAAGTAACAGCTTGAGCA+GGG | - | chr7_2:30561604-30561623 | Msa1055640:intron | 40.0% | |
| ATTAACACCCTGGCAACAAT+CGG | + | chr7_2:30561642-30561661 | None:intergenic | 40.0% | |
| AAGAAACTCCATTAACACCC+TGG | + | chr7_2:30561652-30561671 | None:intergenic | 40.0% | |
| !!! | TCGTCTTTTTTTGCAGGACT+TGG | + | chr7_2:30561686-30561705 | None:intergenic | 40.0% |
| TAAGATCCGGTCTCTATTGA+AGG | - | chr7_2:30561727-30561746 | Msa1055640:CDS | 40.0% | |
| ! | ACGCTTTATTGGTCTGTCAA+AGG | - | chr7_2:30561946-30561965 | Msa1055640:CDS | 40.0% |
| ATTATGACTGTATACGCTGC+TGG | - | chr7_2:30562030-30562049 | Msa1055640:CDS | 40.0% | |
| TTATGACTGTATACGCTGCT+GGG | - | chr7_2:30562031-30562050 | Msa1055640:CDS | 40.0% | |
| AATCAGTCACGCAGACAAAA+TGG | + | chr7_2:30562061-30562080 | None:intergenic | 40.0% | |
| ATGTACACCGAAAAACTCGC+CGG | - | chr7_2:30556961-30556980 | Msa1055640:three_prime_UTR | 45.0% | |
| ACTACAAAAACCACCTCTCC+TGG | - | chr7_2:30557019-30557038 | Msa1055640:three_prime_UTR | 45.0% | |
| !! | CTTACGGGCTTTAAACGTGT+CGG | + | chr7_2:30557094-30557113 | None:intergenic | 45.0% |
| !!! | CGGTGACGTTTTGATTTTCC+CGG | - | chr7_2:30557253-30557272 | Msa1055640:CDS | 45.0% |
| AGCGCCCAAAATGTTTGAGA+CGG | + | chr7_2:30557915-30557934 | None:intergenic | 45.0% | |
| TTGGTCTCGTAGGAACAGAT+GGG | - | chr7_2:30558498-30558517 | Msa1055640:intron | 45.0% | |
| !!! | AGGTTCTGCTAGTTTTGCTG+AGG | - | chr7_2:30558703-30558722 | Msa1055640:intron | 45.0% |
| !!! | GGTTCTGCTAGTTTTGCTGA+GGG | - | chr7_2:30558704-30558723 | Msa1055640:intron | 45.0% |
| !!! | GCTAGTTTTGCTGAGGGTTT+TGG | - | chr7_2:30558710-30558729 | Msa1055640:intron | 45.0% |
| TTTGGTCTATGTGCCAGTGT+TGG | - | chr7_2:30559055-30559074 | Msa1055640:intron | 45.0% | |
| TGAGACCGAATGGAGTTTCA+AGG | - | chr7_2:30559149-30559168 | Msa1055640:intron | 45.0% | |
| ! | CATATGGGCTATTGGAGTAC+CGG | - | chr7_2:30559378-30559397 | Msa1055640:CDS | 45.0% |
| AATTGAGCTTCGAGGTCTGA+AGG | - | chr7_2:30559501-30559520 | Msa1055640:CDS | 45.0% | |
| !! | TGACCCATTGTTTTTCCGTC+CGG | + | chr7_2:30559604-30559623 | None:intergenic | 45.0% |
| ACGGAAAAACAATGGGTCAC+TGG | - | chr7_2:30559605-30559624 | Msa1055640:CDS | 45.0% | |
| GAGAGGTTATACAGCGACTT+TGG | - | chr7_2:30559779-30559798 | Msa1055640:intron | 45.0% | |
| AGGTTATACAGCGACTTTGG+AGG | - | chr7_2:30559782-30559801 | Msa1055640:intron | 45.0% | |
| ! | TATACAGCGACTTTGGAGGT+TGG | - | chr7_2:30559786-30559805 | Msa1055640:intron | 45.0% |
| CTGTTAGGACCTAGTATGAG+AGG | - | chr7_2:30559957-30559976 | Msa1055640:intron | 45.0% | |
| AGGGGAATTCTTAGGAGTCT+TGG | - | chr7_2:30560111-30560130 | Msa1055640:intron | 45.0% | |
| TTAGGAGTCTTGGAGTAGGA+CGG | - | chr7_2:30560121-30560140 | Msa1055640:intron | 45.0% | |
| !! | TTTCTCTTTAGGGCCAGAGT+AGG | - | chr7_2:30560151-30560170 | Msa1055640:intron | 45.0% |
| GATTCCTCTCTGAGCTATGT+CGG | - | chr7_2:30560173-30560192 | Msa1055640:intron | 45.0% | |
| ACCGTCTTACCTCTCAACTA+TGG | - | chr7_2:30560438-30560457 | Msa1055640:intron | 45.0% | |
| GAGATGAAGGAATACAACGG+TGG | + | chr7_2:30561109-30561128 | None:intergenic | 45.0% | |
| CCCGAGATGAAGGAATACAA+CGG | + | chr7_2:30561112-30561131 | None:intergenic | 45.0% | |
| CCGTTGTATTCCTTCATCTC+GGG | - | chr7_2:30561109-30561128 | Msa1055640:intron | 45.0% | |
| TGCTAAGTAGTTGCCTCCTT+TGG | + | chr7_2:30561344-30561363 | None:intergenic | 45.0% | |
| TCATTTGCTCCCTTCACTTC+TGG | + | chr7_2:30561521-30561540 | None:intergenic | 45.0% | |
| TGGCATGATCTCCATTAGCA+AGG | + | chr7_2:30561565-30561584 | None:intergenic | 45.0% | |
| AAATGTGACCGATTGTTGCC+AGG | - | chr7_2:30561631-30561650 | Msa1055640:intron | 45.0% | |
| AATGTGACCGATTGTTGCCA+GGG | - | chr7_2:30561632-30561651 | Msa1055640:intron | 45.0% | |
| ! | GATTGTTGCCAGGGTGTTAA+TGG | - | chr7_2:30561641-30561660 | Msa1055640:intron | 45.0% |
| AGGGCAAAAGCTGTAAGATC+CGG | - | chr7_2:30561714-30561733 | Msa1055640:CDS | 45.0% | |
| GTTGTGATGAAAGCTTCTGC+TGG | - | chr7_2:30562100-30562119 | Msa1055640:five_prime_UTR | 45.0% | |
| !!! | TTTCTATTTTTATTTATTTA+TGG | - | chr7_2:30557334-30557353 | Msa1055640:CDS | 5.0% |
| !!! | TTTTTTTTTTTTTAAACAAA+GGG | + | chr7_2:30558823-30558842 | None:intergenic | 5.0% |
| CATTTCAGGGCGAGTGAAAC+CGG | + | chr7_2:30556944-30556963 | None:intergenic | 50.0% | |
| TTTGGGAAGAGGATGGTCGT+CGG | + | chr7_2:30557064-30557083 | None:intergenic | 50.0% | |
| TGTGAAGCCAGTGAGGAAGA+TGG | - | chr7_2:30557221-30557240 | Msa1055640:CDS | 50.0% | |
| GGAGAATCCATCTTCCTCAC+TGG | + | chr7_2:30557231-30557250 | None:intergenic | 50.0% | |
| ! | GAGGAAGATGGATTCTCCGA+CGG | - | chr7_2:30557233-30557252 | Msa1055640:CDS | 50.0% |
| GATGGCCCAACATTGGAACA+AGG | + | chr7_2:30557950-30557969 | None:intergenic | 50.0% | |
| CATCTGTTCCTACGAGACCA+AGG | + | chr7_2:30558499-30558518 | None:intergenic | 50.0% | |
| CTTGGTCTCGTAGGAACAGA+TGG | - | chr7_2:30558497-30558516 | Msa1055640:intron | 50.0% | |
| GCAGACCAACTGGCTAATCT+AGG | - | chr7_2:30558592-30558611 | Msa1055640:intron | 50.0% | |
| AAAGGGAGAAGTAGCCAGAG+AGG | + | chr7_2:30558806-30558825 | None:intergenic | 50.0% | |
| CGGTACTCCAATAGCCCATA+TGG | + | chr7_2:30559380-30559399 | None:intergenic | 50.0% | |
| !!! | GGAGTACCGGAGGTTTTAAC+TGG | - | chr7_2:30559391-30559410 | Msa1055640:CDS | 50.0% |
| GGAAGCCGTGATGTTAGATG+TGG | - | chr7_2:30559439-30559458 | Msa1055640:CDS | 50.0% | |
| TGTTACTGCCTGTTCTCACC+TGG | - | chr7_2:30559534-30559553 | Msa1055640:CDS | 50.0% | |
| GTTACTGCCTGTTCTCACCT+GGG | - | chr7_2:30559535-30559554 | Msa1055640:CDS | 50.0% | |
| ATATACAGTCCAGGACCGGA+CGG | - | chr7_2:30559586-30559605 | Msa1055640:intron | 50.0% | |
| !! | ATTGTTTTTCCGTCCGGTCC+TGG | + | chr7_2:30559598-30559617 | None:intergenic | 50.0% |
| AGGACCGGACGGAAAAACAA+TGG | - | chr7_2:30559597-30559616 | Msa1055640:intron | 50.0% | |
| GGACCGGACGGAAAAACAAT+GGG | - | chr7_2:30559598-30559617 | Msa1055640:intron | 50.0% | |
| CTCAGAGAGGAATCCTACTC+TGG | + | chr7_2:30560167-30560186 | None:intergenic | 50.0% | |
| CTATGTCGGAGCTTTGCTCT+GGG | - | chr7_2:30560187-30560206 | Msa1055640:intron | 50.0% | |
| ACCGTCTGTTCCAGAAGTGA+AGG | - | chr7_2:30561508-30561527 | Msa1055640:intron | 50.0% | |
| !! | CCCTTCACTTCTGGAACAGA+CGG | + | chr7_2:30561512-30561531 | None:intergenic | 50.0% |
| CCGTCTGTTCCAGAAGTGAA+GGG | - | chr7_2:30561509-30561528 | Msa1055640:intron | 50.0% | |
| CACGCTCCTTCAATAGAGAC+CGG | + | chr7_2:30561736-30561755 | None:intergenic | 50.0% | |
| CGTGAAATTCTCACAGCCGT+TGG | - | chr7_2:30561752-30561771 | Msa1055640:CDS | 50.0% | |
| !! | GGTGTCGGTGGAAGAGGTAT+CGG | + | chr7_2:30556923-30556942 | None:intergenic | 55.0% |
| GATACCTCTTCCACCGACAC+CGG | - | chr7_2:30556922-30556941 | Msa1055640:three_prime_UTR | 55.0% | |
| CGACGAGTTTGGGAAGAGGA+TGG | + | chr7_2:30557071-30557090 | None:intergenic | 55.0% | |
| ! | AACGTGTCGGCGACGAGTTT+GGG | + | chr7_2:30557081-30557100 | None:intergenic | 55.0% |
| ! | AAACGTGTCGGCGACGAGTT+TGG | + | chr7_2:30557082-30557101 | None:intergenic | 55.0% |
| CACTGTGTGTGAAGCCAGTG+AGG | - | chr7_2:30557214-30557233 | Msa1055640:CDS | 55.0% | |
| AGGGCACACACTACCAACAC+TGG | + | chr7_2:30559071-30559090 | None:intergenic | 55.0% | |
| !! | ATGGGCTATTGGAGTACCGG+AGG | - | chr7_2:30559381-30559400 | Msa1055640:CDS | 55.0% |
| TGGGTGGGCACAAGTATGCT+GGG | - | chr7_2:30559554-30559573 | Msa1055640:intron | 55.0% | |
| AGCTCCGACATAGCTCAGAG+AGG | + | chr7_2:30560180-30560199 | None:intergenic | 55.0% | |
| GCTATGTCGGAGCTTTGCTC+TGG | - | chr7_2:30560186-30560205 | Msa1055640:intron | 55.0% | |
| ATCACAGCAGCCCGAGATGA+AGG | + | chr7_2:30561122-30561141 | None:intergenic | 55.0% | |
| CTGGAACAGACGGTCCCATT+TGG | + | chr7_2:30561502-30561521 | None:intergenic | 55.0% | |
| CACAGCTCCAAGCACACCAA+CGG | + | chr7_2:30561771-30561790 | None:intergenic | 55.0% | |
| !! | GTCGGTGGAAGAGGTATCGG+AGG | + | chr7_2:30556920-30556939 | None:intergenic | 60.0% |
| !! | GAAACCGGTGTCGGTGGAAG+AGG | + | chr7_2:30556929-30556948 | None:intergenic | 60.0% |
| AGGGCGAGTGAAACCGGTGT+CGG | + | chr7_2:30556938-30556957 | None:intergenic | 60.0% | |
| !!! | GACGGTGCCGGCGAGTTTTT+CGG | + | chr7_2:30556971-30556990 | None:intergenic | 60.0% |
| !! | GTGACGGTCGTAAGCGTCGA+CGG | + | chr7_2:30556989-30557008 | None:intergenic | 60.0% |
| GATGGTCGTCGGAAGCTTCG+AGG | + | chr7_2:30557053-30557072 | None:intergenic | 60.0% | |
| TCGGCGACGAGTTTGGGAAG+AGG | + | chr7_2:30557075-30557094 | None:intergenic | 60.0% | |
| ACTGCCTGTTCTCACCTGGG+TGG | - | chr7_2:30559538-30559557 | Msa1055640:CDS | 60.0% | |
| CTGCCTGTTCTCACCTGGGT+GGG | - | chr7_2:30559539-30559558 | Msa1055640:CDS | 60.0% | |
| CAGCATACTTGTGCCCACCC+AGG | + | chr7_2:30559555-30559574 | None:intergenic | 60.0% | |
| CTGGGTGGGCACAAGTATGC+TGG | - | chr7_2:30559553-30559572 | Msa1055640:intron | 60.0% | |
| CTCACAGCCGTTGGTGTGCT+TGG | - | chr7_2:30561761-30561780 | Msa1055640:CDS | 60.0% | |
| CGTTGGTGTGCTTGGAGCTG+TGG | - | chr7_2:30561769-30561788 | Msa1055640:CDS | 60.0% | |
| TGGTGTGCTTGGAGCTGTGG+CGG | - | chr7_2:30561772-30561791 | Msa1055640:CDS | 60.0% | |
| ! | GCGAGTGAAACCGGTGTCGG+TGG | + | chr7_2:30556935-30556954 | None:intergenic | 65.0% |
| !! | GTCGTAAGCGTCGACGGTGC+CGG | + | chr7_2:30556983-30557002 | None:intergenic | 65.0% |
| TCGGAAGCTTCGAGGCGTGG+TGG | + | chr7_2:30557045-30557064 | None:intergenic | 65.0% | |
| TCGTCGGAAGCTTCGAGGCG+TGG | + | chr7_2:30557048-30557067 | None:intergenic | 65.0% | |
| TCCTGGGGTGGTAGCCTCTC+TGG | - | chr7_2:30558789-30558808 | Msa1055640:intron | 65.0% | |
| GTGCCCACCCAGGTGAGAAC+AGG | + | chr7_2:30559545-30559564 | None:intergenic | 65.0% | |
| AGCTTCGAGGCGTGGTGGCC+AGG | + | chr7_2:30557040-30557059 | None:intergenic | 70.0% | |
| GCCAGAGAGGCTACCACCCC+AGG | + | chr7_2:30558793-30558812 | None:intergenic | 70.0% | |
| GGCGTGGTGGCCAGGAGAGG+TGG | + | chr7_2:30557032-30557051 | None:intergenic | 75.0% | |
| CGAGGCGTGGTGGCCAGGAG+AGG | + | chr7_2:30557035-30557054 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 30556850 | 30562152 | 30556850 | ID=Msa1055640;Name=Msa1055640 |
| chr7_2 | mRNA | 30556850 | 30562152 | 30556850 | ID=Msa1055640-mRNA-1;Parent=Msa1055640;Name=Msa1055640-mRNA-1;_AED=0.07;_eAED=0.07;_QI=63|0.8|0.66|1|0.6|0.83|6|317|331 |
| chr7_2 | exon | 30556850 | 30557506 | 30556850 | ID=Msa1055640-mRNA-1:exon:6258;Parent=Msa1055640-mRNA-1 |
| chr7_2 | exon | 30559199 | 30559282 | 30559199 | ID=Msa1055640-mRNA-1:exon:6257;Parent=Msa1055640-mRNA-1 |
| chr7_2 | exon | 30559376 | 30559558 | 30559376 | ID=Msa1055640-mRNA-1:exon:6256;Parent=Msa1055640-mRNA-1 |
| chr7_2 | exon | 30559600 | 30559683 | 30559600 | ID=Msa1055640-mRNA-1:exon:6255;Parent=Msa1055640-mRNA-1 |
| chr7_2 | exon | 30561711 | 30561796 | 30561711 | ID=Msa1055640-mRNA-1:exon:6254;Parent=Msa1055640-mRNA-1 |
| chr7_2 | exon | 30561871 | 30562152 | 30561871 | ID=Msa1055640-mRNA-1:exon:6253;Parent=Msa1055640-mRNA-1 |
| chr7_2 | five_prime_UTR | 30562090 | 30562152 | 30562090 | ID=Msa1055640-mRNA-1:five_prime_utr;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30561871 | 30562089 | 30561871 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30561711 | 30561796 | 30561711 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30559600 | 30559683 | 30559600 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30559376 | 30559558 | 30559376 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30559199 | 30559282 | 30559199 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | CDS | 30557167 | 30557506 | 30557167 | ID=Msa1055640-mRNA-1:cds;Parent=Msa1055640-mRNA-1 |
| chr7_2 | three_prime_UTR | 30556850 | 30557166 | 30556850 | ID=Msa1055640-mRNA-1:three_prime_utr;Parent=Msa1055640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
