AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008200 MtrunA17_Chr1g0147101 96.959 296 8 1 1 296 1 295 0.0 584
Msa0008200 MtrunA17_Chr1g0147091 82.492 297 44 3 1 296 1 290 3.74e-157 439
Msa0008200 MtrunA17_Chr1g0147081 79.599 299 47 3 1 295 1 289 2.81e-153 430
Msa0008200 MtrunA17_Chr6g0477351 72.656 128 23 3 10 136 28 144 5.99e-36 126
Msa0008200 MtrunA17_Chr3g0104601 24.684 158 83 2 139 296 21 142 2.27e-15 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008200 AT5G53400.1 59.582 287 100 2 25 296 19 304 4.34e-116 337
Msa0008200 AT4G27890.1 56.250 304 114 6 1 296 1 293 5.56e-109 318
Msa0008200 AT5G58740.1 25.949 158 81 3 139 296 21 142 8.68e-14 68.2

Find 97 sgRNAs with CRISPR-Local

Find 213 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTCATGATTTCCTGTTTC+TGG 0.058297 1_1:-11833549 None:intergenic
ACAGTTTGGGGTGTCTAAAT+TGG 0.188690 1_1:+11833869 Msa0008200:three_prime_UTR
TTATATATTTGAACATATTT+TGG 0.220188 1_1:+11833930 Msa0008200:three_prime_UTR
TAAAAGCTTACATCAATAAT+TGG 0.250303 1_1:-11832620 None:intergenic
AACTCTGGTTTATATATTCC+TGG 0.285035 1_1:+11834009 Msa0008200:three_prime_UTR
CAACCATTCATGTTTATGTT+TGG 0.295885 1_1:+11833830 Msa0008200:three_prime_UTR
CTCTCTTGAACTTTCTCTAA+TGG 0.315405 1_1:+11830966 Msa0008200:exon
ATGAGGTTTGGGTTTCTTCT+TGG 0.317575 1_1:-11831005 None:intergenic
TGATCAGAGGCAGAAGTCTA+TGG 0.321181 1_1:+11833504 Msa0008200:CDS
AGAAAGCTGCGCTATGATTC+GGG 0.327767 1_1:+11833726 Msa0008200:exon
TACACTCCCAAACAACAGTT+TGG 0.329221 1_1:+11833855 Msa0008200:three_prime_UTR
AGACACCCCAAACTGTTGTT+TGG 0.354071 1_1:-11833862 None:intergenic
TTCTGGAGCTCCTCACTTGT+TGG 0.356328 1_1:-11833532 None:intergenic
TTGGGTTTCTTCTTGGTAAT+CGG 0.361888 1_1:-11830998 None:intergenic
TCAAGCCTGATGAATGTTAC+TGG 0.367377 1_1:+11832829 Msa0008200:CDS
ATCCATACCATTACCCTGAT+TGG 0.375160 1_1:-11832462 None:intergenic
AGCAGCAATCTTAGCTTTCT+CGG 0.384597 1_1:-11831226 None:intergenic
TTTGAGAAGAAGATGAGGTT+TGG 0.388546 1_1:-11831017 None:intergenic
CGAATCATTGTCGAAGAAAT+CGG 0.389616 1_1:-11831139 None:intergenic
GACACCCCAAACTGTTGTTT+GGG 0.392691 1_1:-11833861 None:intergenic
AAACATAAACATGAATGGTT+GGG 0.395039 1_1:-11833828 None:intergenic
TTGATGGACAGTTCCCAATC+AGG 0.395904 1_1:+11832448 Msa0008200:intron
TAGAAAGCTGCGCTATGATT+CGG 0.396170 1_1:+11833725 Msa0008200:exon
TCAACAGTCTGTCGAGTCTC+AGG 0.400798 1_1:-11833170 None:intergenic
TCACCAAGTTTGCTGCTCTC+AGG 0.401717 1_1:-11833140 None:intergenic
ACACTCCCAAACAACAGTTT+GGG 0.405028 1_1:+11833856 Msa0008200:three_prime_UTR
CAGTTTGGGGTGTCTAAATT+GGG 0.407050 1_1:+11833870 Msa0008200:three_prime_UTR
AGAAAAGCGGTTGGATTTGA+AGG 0.414688 1_1:-11831081 None:intergenic
TGGATCTGGAGAAATATTCT+TGG 0.418168 1_1:+11832480 Msa0008200:CDS
CATGAAGAAATTTATGAGTC+AGG 0.419859 1_1:+11833564 Msa0008200:CDS
TTGAGAAGAAGATGAGGTTT+GGG 0.427139 1_1:-11831016 None:intergenic
TTTAACCAAGCATGATCAAA+TGG 0.428418 1_1:+11833061 Msa0008200:CDS
AAGTGAGGAGCTCCAGAAAC+AGG 0.431963 1_1:+11833537 Msa0008200:CDS
TGAGAAGGAAGATGAGAAGA+CGG 0.436290 1_1:+11831320 Msa0008200:CDS
CATCTAAAAGTTGGAATCAA+AGG 0.443557 1_1:+11832590 Msa0008200:CDS
GAACCTGAGAGCAGCAAACT+TGG 0.444776 1_1:+11833137 Msa0008200:CDS
CCAGTCCATTTGATCATGCT+TGG 0.448786 1_1:-11833066 None:intergenic
AAGAAGAACCATCTAAAAGT+TGG 0.449134 1_1:+11832581 Msa0008200:CDS
GATGGAGAAAGTGGCTTAGC+AGG 0.450109 1_1:+11831342 Msa0008200:CDS
CGATTTCTTCGACAATGATT+CGG 0.451771 1_1:+11831140 Msa0008200:CDS
AGCTATGGAGGTAGATGAGA+AGG 0.453896 1_1:+11831305 Msa0008200:CDS
TCAGGGTAATGGTATGGATC+TGG 0.458750 1_1:+11832466 Msa0008200:CDS
GGCTGCTGCTGTTGCTGCGG+CGG 0.463855 1_1:+11831275 Msa0008200:CDS
AAGGTGGAAGAGAACGGAAT+AGG 0.487694 1_1:-11831054 None:intergenic
TCCATACCATTACCCTGATT+GGG 0.488514 1_1:-11832461 None:intergenic
ATGCTCCAGTAACATTCATC+AGG 0.490196 1_1:-11832834 None:intergenic
TAAACCAGAGTTTGATTCGA+TGG 0.492391 1_1:-11833998 None:intergenic
CGACAATGATTCGGCTGAGA+AGG 0.493721 1_1:+11831149 Msa0008200:CDS
AAACCAGAGTTTGATTCGAT+GGG 0.498271 1_1:-11833997 None:intergenic
CAAACATAAACATGAATGGT+TGG 0.500868 1_1:-11833829 None:intergenic
ATCTAAAAGTTGGAATCAAA+GGG 0.502699 1_1:+11832591 Msa0008200:CDS
GGAGCTCCTCACTTGTTGGA+AGG 0.509413 1_1:-11833528 None:intergenic
AAGGAAGATGAGAAGACGGA+TGG 0.515138 1_1:+11831324 Msa0008200:CDS
TGGTGGAAATGTCTTGTTAA+GGG 0.518276 1_1:+11833086 Msa0008200:CDS
TCCCAATCAGGGTAATGGTA+TGG 0.518546 1_1:+11832460 Msa0008200:CDS
GCATTCGAGAAGTCCATCTC+CGG 0.524232 1_1:-11833692 None:intergenic
AGAGAAGGCGAAGGTTGATA+AGG 0.527997 1_1:+11831251 Msa0008200:CDS
TGTATTGCAGCATCCGGAGA+TGG 0.529847 1_1:+11833679 Msa0008200:intron
TCTGTCGAGTCTCAGGATCC+AGG 0.530996 1_1:-11833163 None:intergenic
TTATATCATGGTTTAAGTAA+CGG 0.532998 1_1:+11833957 Msa0008200:three_prime_UTR
AATCCAAACATAAACATGAA+TGG 0.536791 1_1:-11833833 None:intergenic
ATCCGCCGTTCGCGCTGTGA+AGG 0.537892 1_1:+11831179 Msa0008200:CDS
GAGAAGACGGATGGAGAAAG+TGG 0.540556 1_1:+11831333 Msa0008200:CDS
GTGAATGTTCCAGTGCCAAA+TGG 0.540930 1_1:+11832527 Msa0008200:CDS
TTCCCCATCGAATCAAACTC+TGG 0.541453 1_1:+11833994 Msa0008200:three_prime_UTR
TGATGGACAGTTCCCAATCA+GGG 0.541528 1_1:+11832449 Msa0008200:intron
TGCCAAATGGAACAAAATCA+AGG 0.549463 1_1:+11832540 Msa0008200:CDS
GAGCAGCAAACTTGGTGACC+TGG 0.549952 1_1:+11833145 Msa0008200:CDS
AACATAAACATGAATGGTTG+GGG 0.550301 1_1:-11833827 None:intergenic
AAGCTTACATCAATAATTGG+TGG 0.551582 1_1:-11832617 None:intergenic
ACAGTTCCCAATCAGGGTAA+TGG 0.556894 1_1:+11832455 Msa0008200:intron
GATCAGAGGCAGAAGTCTAT+GGG 0.558052 1_1:+11833505 Msa0008200:CDS
GATGAATGTTACTGGAGCAT+AGG 0.561295 1_1:+11832837 Msa0008200:CDS
CAATGATTCGGCTGAGAAGG+TGG 0.562539 1_1:+11831152 Msa0008200:CDS
CTGGTGGAAATGTCTTGTTA+AGG 0.563095 1_1:+11833085 Msa0008200:CDS
TAAGATTGCTGCTGAAGAGA+AGG 0.565303 1_1:+11831236 Msa0008200:CDS
TGTATTCGACTTCATCGCTA+AGG 0.567639 1_1:+11831110 Msa0008200:CDS
ACAGACTGTTGAAAAGATGA+TGG 0.576647 1_1:+11833181 Msa0008200:CDS
AGCATGATCAAATGGACTGG+TGG 0.576780 1_1:+11833069 Msa0008200:CDS
GGCGGCTGCTGCTGTTGCTG+CGG 0.581390 1_1:+11831272 Msa0008200:CDS
TGGATTTGAAGGATCGAAGG+TGG 0.582135 1_1:-11831070 None:intergenic
TTCTTTAACAGTTTGATCAG+AGG 0.586849 1_1:+11833491 Msa0008200:intron
TACTCTAAAGATTACCCCAA+AGG 0.588595 1_1:-11833782 None:intergenic
CCAAGCATGATCAAATGGAC+TGG 0.599013 1_1:+11833066 Msa0008200:CDS
GGATCGAAGGTGGAAGAGAA+CGG 0.602076 1_1:-11831060 None:intergenic
GGTTGGATTTGAAGGATCGA+AGG 0.613022 1_1:-11831073 None:intergenic
TACCTTCACAGCGCGAACGG+CGG 0.622007 1_1:-11831181 None:intergenic
CTTTACCTTCACAGCGCGAA+CGG 0.628341 1_1:-11831184 None:intergenic
TGCTGCTGAAGAGAAGGCGA+AGG 0.633806 1_1:+11831242 Msa0008200:CDS
GAAAGCTGCGCTATGATTCG+GGG 0.646728 1_1:+11833727 Msa0008200:exon
GAAGGCGAAGGTTGATAAGG+CGG 0.650147 1_1:+11831254 Msa0008200:CDS
CACTCCCAAACAACAGTTTG+GGG 0.650363 1_1:+11833857 Msa0008200:three_prime_UTR
AACCAGAGTTTGATTCGATG+GGG 0.651671 1_1:-11833996 None:intergenic
TGTGAAGGTAAAGAAAGCTA+AGG 0.664999 1_1:+11831194 Msa0008200:CDS
TGCGGCGGAGAAGAAAGCTA+TGG 0.665095 1_1:+11831290 Msa0008200:CDS
TATGGGCCTTCCAACAAGTG+AGG 0.673276 1_1:+11833522 Msa0008200:CDS
GGCGGAGAAGAAAGCTATGG+AGG 0.684045 1_1:+11831293 Msa0008200:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAATTTTTTTAAAAATAT+TGG + chr1_1:11831422-11831441 Msa0008200:intron 0.0%
!!! TTAATTTTTTTAAAAATATT+GGG + chr1_1:11831423-11831442 Msa0008200:intron 0.0%
!! AAAGAAATAAAAATAAACTA+GGG - chr1_1:11831405-11831424 None:intergenic 10.0%
!! TAAAGAAATAAAAATAAACT+AGG - chr1_1:11831406-11831425 None:intergenic 10.0%
!!! TTATATATTTGAACATATTT+TGG + chr1_1:11833930-11833949 Msa0008200:three_prime_UTR 10.0%
!! TTGATTGTTTATTAAATCTA+TGG + chr1_1:11831803-11831822 Msa0008200:intron 15.0%
!! ATTGTAAATTATCAAAATGA+TGG + chr1_1:11832267-11832286 Msa0008200:intron 15.0%
!! AAAAAATTCAGATATATAGT+TGG - chr1_1:11832393-11832412 None:intergenic 15.0%
!!! TCATTATTTTAAAATTTCTC+AGG + chr1_1:11832788-11832807 Msa0008200:intron 15.0%
!!! CATTATTTTAAAATTTCTCA+GGG + chr1_1:11832789-11832808 Msa0008200:intron 15.0%
!!! ATTATTTTAAAATTTCTCAG+GGG + chr1_1:11832790-11832809 Msa0008200:intron 15.0%
!!! TTTTAAACTTGTGAAAATTT+TGG + chr1_1:11832940-11832959 Msa0008200:intron 15.0%
!!! AAAATATTTTGAAATACCTT+TGG + chr1_1:11833766-11833785 Msa0008200:three_prime_UTR 15.0%
!!! AAATATTTTGAAATACCTTT+GGG + chr1_1:11833767-11833786 Msa0008200:three_prime_UTR 15.0%
!!! ATTTTGTTTTATTTTTATGC+AGG - chr1_1:11834037-11834056 None:intergenic 15.0%
!! TGAAATTTATGAGATAACAA+TGG + chr1_1:11831492-11831511 Msa0008200:intron 20.0%
!! GAAATTTATGAGATAACAAT+GGG + chr1_1:11831493-11831512 Msa0008200:intron 20.0%
!!! AAATTATCAAAATGATGGAA+TGG + chr1_1:11832272-11832291 Msa0008200:intron 20.0%
!! TTTAACTATTCATTAGCTAA+TGG + chr1_1:11832340-11832359 Msa0008200:intron 20.0%
!! TAAAAGCTTACATCAATAAT+TGG - chr1_1:11832623-11832642 None:intergenic 20.0%
!! TTAAAATAATGAATCAGCAA+AGG - chr1_1:11832780-11832799 None:intergenic 20.0%
!!! TTATTTTAAAATTTCTCAGG+GGG + chr1_1:11832791-11832810 Msa0008200:intron 20.0%
!!! TACTTAATATAACTTGCATT+TGG + chr1_1:11833238-11833257 Msa0008200:intron 20.0%
!!! TATGTATCTATTCTTTTGTT+GGG + chr1_1:11833309-11833328 Msa0008200:intron 20.0%
!!! AATATTTTGAAATACCTTTG+GGG + chr1_1:11833768-11833787 Msa0008200:three_prime_UTR 20.0%
!!! TATTTTGGAGTTTTATATCA+TGG + chr1_1:11833945-11833964 Msa0008200:three_prime_UTR 20.0%
!! TTATATCATGGTTTAAGTAA+CGG + chr1_1:11833957-11833976 Msa0008200:three_prime_UTR 20.0%
! TGTATCATATTGTATTGCTA+TGG + chr1_1:11831563-11831582 Msa0008200:intron 25.0%
! TTAAATATGCCAAAATTGCT+AGG + chr1_1:11831666-11831685 Msa0008200:intron 25.0%
! TAAATATGCCAAAATTGCTA+GGG + chr1_1:11831667-11831686 Msa0008200:intron 25.0%
! TAGATGATAAACCAATGATA+AGG + chr1_1:11831849-11831868 Msa0008200:intron 25.0%
!! CACTCAATGCTTAAAATTTT+GGG - chr1_1:11831910-11831929 None:intergenic 25.0%
!! ACACTCAATGCTTAAAATTT+TGG - chr1_1:11831911-11831930 None:intergenic 25.0%
!!! TATGCATATACCACATTTTT+TGG + chr1_1:11831989-11832008 Msa0008200:intron 25.0%
! GTTTCTATTACCAAAAAATG+TGG - chr1_1:11832002-11832021 None:intergenic 25.0%
! ATCTATATCACAAAGACTTT+CGG + chr1_1:11832036-11832055 Msa0008200:intron 25.0%
! ATCTAAAAGTTGGAATCAAA+GGG + chr1_1:11832591-11832610 Msa0008200:CDS 25.0%
! TCAAACAAACTAAAAATTCC+AGG - chr1_1:11832744-11832763 None:intergenic 25.0%
! GAATTATGGTCACTTAAAAA+GGG - chr1_1:11832895-11832914 None:intergenic 25.0%
! TGAATTATGGTCACTTAAAA+AGG - chr1_1:11832896-11832915 None:intergenic 25.0%
! TTAAGTGACCATAATTCATT+AGG + chr1_1:11832898-11832917 Msa0008200:intron 25.0%
! ATCATGATCCTAATGAATTA+TGG - chr1_1:11832909-11832928 None:intergenic 25.0%
! ATAATTCATTAGGATCATGA+TGG + chr1_1:11832908-11832927 Msa0008200:intron 25.0%
!!! TTTAAAACCTATTTTTGCAG+AGG + chr1_1:11833016-11833035 Msa0008200:intron 25.0%
!! GTATGTATCTATTCTTTTGT+TGG + chr1_1:11833308-11833327 Msa0008200:intron 25.0%
! ATAATCGAATAGAGATAACT+TGG + chr1_1:11833370-11833389 Msa0008200:intron 25.0%
!! AGATTTAAATAGCACTGTTT+TGG + chr1_1:11833425-11833444 Msa0008200:intron 25.0%
! TCAAACTGTTAAAGAATACA+GGG - chr1_1:11833487-11833506 None:intergenic 25.0%
! ATCAAACTGTTAAAGAATAC+AGG - chr1_1:11833488-11833507 None:intergenic 25.0%
! AGAAGCAATACAAAAATCAA+AGG - chr1_1:11833594-11833613 None:intergenic 25.0%
! AAACATAAACATGAATGGTT+GGG - chr1_1:11833831-11833850 None:intergenic 25.0%
! AATCCAAACATAAACATGAA+TGG - chr1_1:11833836-11833855 None:intergenic 25.0%
!! TTTTGTTTGAGAAGAAGATG+AGG - chr1_1:11831025-11831044 None:intergenic 30.0%
!! GAATACATTTTCGAGAAAAG+CGG - chr1_1:11831097-11831116 None:intergenic 30.0%
! TTTGCTATGAACATTGTGTT+GGG + chr1_1:11831463-11831482 Msa0008200:intron 30.0%
!! GCAATTTTGGCATATTTAAC+CGG - chr1_1:11831665-11831684 None:intergenic 30.0%
AAATATGCCAAAATTGCTAG+GGG + chr1_1:11831668-11831687 Msa0008200:intron 30.0%
GATGAAATGACAATAATCAC+CGG - chr1_1:11831725-11831744 None:intergenic 30.0%
AAAATGTGGTATATGCATAG+TGG - chr1_1:11831988-11832007 None:intergenic 30.0%
! TTTGTGATATAGATGGACTT+AGG - chr1_1:11832030-11832049 None:intergenic 30.0%
GAAAGTCTTTGTGATATAGA+TGG - chr1_1:11832037-11832056 None:intergenic 30.0%
AAACACAATCAAATCAGAGA+GGG - chr1_1:11832223-11832242 None:intergenic 30.0%
! TACATCTTTGCTCTTTTTGA+TGG + chr1_1:11832432-11832451 Msa0008200:intron 30.0%
! AACCTTGATTTTGTTCCATT+TGG - chr1_1:11832545-11832564 None:intergenic 30.0%
AAGAAGAACCATCTAAAAGT+TGG + chr1_1:11832581-11832600 Msa0008200:CDS 30.0%
! CTTTGATTCCAACTTTTAGA+TGG - chr1_1:11832592-11832611 None:intergenic 30.0%
CATCTAAAAGTTGGAATCAA+AGG + chr1_1:11832590-11832609 Msa0008200:CDS 30.0%
AAGCTTACATCAATAATTGG+TGG - chr1_1:11832620-11832639 None:intergenic 30.0%
TTTAACCAAGCATGATCAAA+TGG + chr1_1:11833061-11833080 Msa0008200:CDS 30.0%
!!! ACTTTTTGGGTGTTAATTTC+AGG - chr1_1:11833116-11833135 None:intergenic 30.0%
GATACATACTTAAATGCAAC+AGG - chr1_1:11833297-11833316 None:intergenic 30.0%
! AAGATGACATTCTAGTTGAA+TGG + chr1_1:11833344-11833363 Msa0008200:intron 30.0%
TTCTTTAACAGTTTGATCAG+AGG + chr1_1:11833491-11833510 Msa0008200:intron 30.0%
CATGAAGAAATTTATGAGTC+AGG + chr1_1:11833564-11833583 Msa0008200:CDS 30.0%
CAAATTTACTAGATCGACAA+AGG - chr1_1:11833641-11833660 None:intergenic 30.0%
! ATTTTATGTATTGCAGCATC+CGG + chr1_1:11833673-11833692 Msa0008200:intron 30.0%
!!! TTAGAGTACTTGTTTTGACT+TGG + chr1_1:11833797-11833816 Msa0008200:three_prime_UTR 30.0%
AACATAAACATGAATGGTTG+GGG - chr1_1:11833830-11833849 None:intergenic 30.0%
CAAACATAAACATGAATGGT+TGG - chr1_1:11833832-11833851 None:intergenic 30.0%
CAACCATTCATGTTTATGTT+TGG + chr1_1:11833830-11833849 Msa0008200:three_prime_UTR 30.0%
!! GTTTTGTTCACAAACATGTT+TGG + chr1_1:11833892-11833911 Msa0008200:three_prime_UTR 30.0%
! AACTCTGGTTTATATATTCC+TGG + chr1_1:11834009-11834028 Msa0008200:three_prime_UTR 30.0%
!!! TTTATTTTTATGCAGGAACC+AGG - chr1_1:11834030-11834049 None:intergenic 30.0%
CTCTCTTGAACTTTCTCTAA+TGG + chr1_1:11830966-11830985 Msa0008200:exon 35.0%
! TTGGGTTTCTTCTTGGTAAT+CGG - chr1_1:11831001-11831020 None:intergenic 35.0%
TTGAGAAGAAGATGAGGTTT+GGG - chr1_1:11831019-11831038 None:intergenic 35.0%
TTTGAGAAGAAGATGAGGTT+TGG - chr1_1:11831020-11831039 None:intergenic 35.0%
CGAATCATTGTCGAAGAAAT+CGG - chr1_1:11831142-11831161 None:intergenic 35.0%
CGATTTCTTCGACAATGATT+CGG + chr1_1:11831140-11831159 Msa0008200:CDS 35.0%
TGTGAAGGTAAAGAAAGCTA+AGG + chr1_1:11831194-11831213 Msa0008200:CDS 35.0%
!! GTTTGCTATGAACATTGTGT+TGG + chr1_1:11831462-11831481 Msa0008200:intron 35.0%
! GTTTAAACCCCTAGCAATTT+TGG - chr1_1:11831678-11831697 None:intergenic 35.0%
CAAACACAATCAAATCAGAG+AGG - chr1_1:11832224-11832243 None:intergenic 35.0%
! CTCTCTGATTTGATTGTGTT+TGG + chr1_1:11832222-11832241 Msa0008200:intron 35.0%
TGGATCTGGAGAAATATTCT+TGG + chr1_1:11832480-11832499 Msa0008200:CDS 35.0%
TGCCAAATGGAACAAAATCA+AGG + chr1_1:11832540-11832559 Msa0008200:CDS 35.0%
CAACAGTAACTGCTATAACT+TGG - chr1_1:11832646-11832665 None:intergenic 35.0%
ATAACACAAACAAGTGTCAC+TGG - chr1_1:11832683-11832702 None:intergenic 35.0%
AGAGTCTTCTGATTGTAACT+AGG + chr1_1:11832966-11832985 Msa0008200:intron 35.0%
! TGGTGGAAATGTCTTGTTAA+GGG + chr1_1:11833086-11833105 Msa0008200:CDS 35.0%
ACAGACTGTTGAAAAGATGA+TGG + chr1_1:11833181-11833200 Msa0008200:CDS 35.0%
!! ATAGCACTGTTTTGGATTTG+AGG + chr1_1:11833433-11833452 Msa0008200:intron 35.0%
TCTTCATGATTTCCTGTTTC+TGG - chr1_1:11833552-11833571 None:intergenic 35.0%
! TACTCTAAAGATTACCCCAA+AGG - chr1_1:11833785-11833804 None:intergenic 35.0%
! AAACCAGAGTTTGATTCGAT+GGG - chr1_1:11834000-11834019 None:intergenic 35.0%
! TAAACCAGAGTTTGATTCGA+TGG - chr1_1:11834001-11834020 None:intergenic 35.0%
! ATGAGGTTTGGGTTTCTTCT+TGG - chr1_1:11831008-11831027 None:intergenic 40.0%
!! GAGAACGGAATAGGTTTTGA+GGG - chr1_1:11831048-11831067 None:intergenic 40.0%
! AGAGAACGGAATAGGTTTTG+AGG - chr1_1:11831049-11831068 None:intergenic 40.0%
AGAAAAGCGGTTGGATTTGA+AGG - chr1_1:11831084-11831103 None:intergenic 40.0%
!! ACATTTTCGAGAAAAGCGGT+TGG - chr1_1:11831093-11831112 None:intergenic 40.0%
TGTATTCGACTTCATCGCTA+AGG + chr1_1:11831110-11831129 Msa0008200:CDS 40.0%
! AGCAGCAATCTTAGCTTTCT+CGG - chr1_1:11831229-11831248 None:intergenic 40.0%
TAAGATTGCTGCTGAAGAGA+AGG + chr1_1:11831236-11831255 Msa0008200:CDS 40.0%
TGAGAAGGAAGATGAGAAGA+CGG + chr1_1:11831320-11831339 Msa0008200:CDS 40.0%
!! TCCACAATTTCTAGCTCAAC+CGG + chr1_1:11831643-11831662 Msa0008200:intron 40.0%
TGATTCACGGTCCTTATCAT+TGG - chr1_1:11831863-11831882 None:intergenic 40.0%
TAACGCGATCTCTTGATTCA+CGG - chr1_1:11831876-11831895 None:intergenic 40.0%
! ATATAGATGGACTTAGGCAG+GGG - chr1_1:11832024-11832043 None:intergenic 40.0%
! GATATAGATGGACTTAGGCA+GGG - chr1_1:11832025-11832044 None:intergenic 40.0%
! TGATATAGATGGACTTAGGC+AGG - chr1_1:11832026-11832045 None:intergenic 40.0%
ATCCATAGTTTGGACTGACA+GGG - chr1_1:11832096-11832115 None:intergenic 40.0%
ATGGTACCAGATCCATAGTT+TGG - chr1_1:11832106-11832125 None:intergenic 40.0%
ATGGATCTGGTACCATATCT+TGG + chr1_1:11832110-11832129 Msa0008200:intron 40.0%
TGGATCTGGTACCATATCTT+GGG + chr1_1:11832111-11832130 Msa0008200:intron 40.0%
CGTCGCTTCTTGCATTTAAA+TGG - chr1_1:11832165-11832184 None:intergenic 40.0%
TCCATACCATTACCCTGATT+GGG - chr1_1:11832464-11832483 None:intergenic 40.0%
ATCCATACCATTACCCTGAT+TGG - chr1_1:11832465-11832484 None:intergenic 40.0%
! GATTTTGTTCCATTTGGCAC+TGG - chr1_1:11832539-11832558 None:intergenic 40.0%
AATTCCAGGCTAAAGACAGA+AGG - chr1_1:11832730-11832749 None:intergenic 40.0%
TCAAGCCTGATGAATGTTAC+TGG + chr1_1:11832829-11832848 Msa0008200:CDS 40.0%
ATGCTCCAGTAACATTCATC+AGG - chr1_1:11832837-11832856 None:intergenic 40.0%
GATGAATGTTACTGGAGCAT+AGG + chr1_1:11832837-11832856 Msa0008200:CDS 40.0%
CTCTGATCCTCTGCAAAAAT+AGG - chr1_1:11833026-11833045 None:intergenic 40.0%
! CTGGTGGAAATGTCTTGTTA+AGG + chr1_1:11833085-11833104 Msa0008200:CDS 40.0%
! GCTCTCAGGTTCAACTTTTT+GGG - chr1_1:11833129-11833148 None:intergenic 40.0%
! TGCTCTCAGGTTCAACTTTT+TGG - chr1_1:11833130-11833149 None:intergenic 40.0%
TTGGATTTGAGGATTTCTCC+CGG + chr1_1:11833444-11833463 Msa0008200:intron 40.0%
GCAACATTAAACCAACTACC+GGG - chr1_1:11833465-11833484 None:intergenic 40.0%
GGCAACATTAAACCAACTAC+CGG - chr1_1:11833466-11833485 None:intergenic 40.0%
TAGAAAGCTGCGCTATGATT+CGG + chr1_1:11833725-11833744 Msa0008200:exon 40.0%
!!! TATGATTCGGGGAGCTTTTT+TGG + chr1_1:11833738-11833757 Msa0008200:three_prime_UTR 40.0%
TACACTCCCAAACAACAGTT+TGG + chr1_1:11833855-11833874 Msa0008200:three_prime_UTR 40.0%
ACACTCCCAAACAACAGTTT+GGG + chr1_1:11833856-11833875 Msa0008200:three_prime_UTR 40.0%
! ACAGTTTGGGGTGTCTAAAT+TGG + chr1_1:11833869-11833888 Msa0008200:three_prime_UTR 40.0%
! CAGTTTGGGGTGTCTAAATT+GGG + chr1_1:11833870-11833889 Msa0008200:three_prime_UTR 40.0%
! AACCAGAGTTTGATTCGATG+GGG - chr1_1:11833999-11834018 None:intergenic 40.0%
AAGGTGGAAGAGAACGGAAT+AGG - chr1_1:11831057-11831076 None:intergenic 45.0%
TGGATTTGAAGGATCGAAGG+TGG - chr1_1:11831073-11831092 None:intergenic 45.0%
GGTTGGATTTGAAGGATCGA+AGG - chr1_1:11831076-11831095 None:intergenic 45.0%
!! AGAGAAGGCGAAGGTTGATA+AGG + chr1_1:11831251-11831270 Msa0008200:CDS 45.0%
AGCTATGGAGGTAGATGAGA+AGG + chr1_1:11831305-11831324 Msa0008200:CDS 45.0%
AAGGAAGATGAGAAGACGGA+TGG + chr1_1:11831324-11831343 Msa0008200:CDS 45.0%
ACCGGTTGAGCTAGAAATTG+TGG - chr1_1:11831647-11831666 None:intergenic 45.0%
GATCCATAGTTTGGACTGAC+AGG - chr1_1:11832097-11832116 None:intergenic 45.0%
GTCAGTCCAAACTATGGATC+TGG + chr1_1:11832097-11832116 Msa0008200:intron 45.0%
GGATCTGGTACCATATCTTG+GGG + chr1_1:11832112-11832131 Msa0008200:intron 45.0%
GATCTGGTACCATATCTTGG+GGG + chr1_1:11832113-11832132 Msa0008200:intron 45.0%
ACCATATCTTGGGGGAATTC+AGG + chr1_1:11832121-11832140 Msa0008200:intron 45.0%
CCATATCTTGGGGGAATTCA+GGG + chr1_1:11832122-11832141 Msa0008200:intron 45.0%
! TTGATGGACAGTTCCCAATC+AGG + chr1_1:11832448-11832467 Msa0008200:intron 45.0%
! TGATGGACAGTTCCCAATCA+GGG + chr1_1:11832449-11832468 Msa0008200:intron 45.0%
ACAGTTCCCAATCAGGGTAA+TGG + chr1_1:11832455-11832474 Msa0008200:intron 45.0%
! TCCCAATCAGGGTAATGGTA+TGG + chr1_1:11832460-11832479 Msa0008200:CDS 45.0%
! TCAGGGTAATGGTATGGATC+TGG + chr1_1:11832466-11832485 Msa0008200:CDS 45.0%
GTGAATGTTCCAGTGCCAAA+TGG + chr1_1:11832527-11832546 Msa0008200:CDS 45.0%
! CACAAACAAGTGTCACTGGA+AGG - chr1_1:11832679-11832698 None:intergenic 45.0%
CCAGTCCATTTGATCATGCT+TGG - chr1_1:11833069-11833088 None:intergenic 45.0%
CCAAGCATGATCAAATGGAC+TGG + chr1_1:11833066-11833085 Msa0008200:CDS 45.0%
!! AGCATGATCAAATGGACTGG+TGG + chr1_1:11833069-11833088 Msa0008200:CDS 45.0%
TGATCAGAGGCAGAAGTCTA+TGG + chr1_1:11833504-11833523 Msa0008200:CDS 45.0%
GATCAGAGGCAGAAGTCTAT+GGG + chr1_1:11833505-11833524 Msa0008200:CDS 45.0%
AGAAAGCTGCGCTATGATTC+GGG + chr1_1:11833726-11833745 Msa0008200:exon 45.0%
CACTCCCAAACAACAGTTTG+GGG + chr1_1:11833857-11833876 Msa0008200:three_prime_UTR 45.0%
! GACACCCCAAACTGTTGTTT+GGG - chr1_1:11833864-11833883 None:intergenic 45.0%
AGACACCCCAAACTGTTGTT+TGG - chr1_1:11833865-11833884 None:intergenic 45.0%
TTCCCCATCGAATCAAACTC+TGG + chr1_1:11833994-11834013 Msa0008200:three_prime_UTR 45.0%
GGATCGAAGGTGGAAGAGAA+CGG - chr1_1:11831063-11831082 None:intergenic 50.0%
! CGACAATGATTCGGCTGAGA+AGG + chr1_1:11831149-11831168 Msa0008200:CDS 50.0%
! CAATGATTCGGCTGAGAAGG+TGG + chr1_1:11831152-11831171 Msa0008200:CDS 50.0%
CTTTACCTTCACAGCGCGAA+CGG - chr1_1:11831187-11831206 None:intergenic 50.0%
!! GAAGGCGAAGGTTGATAAGG+CGG + chr1_1:11831254-11831273 Msa0008200:CDS 50.0%
GAGAAGACGGATGGAGAAAG+TGG + chr1_1:11831333-11831352 Msa0008200:CDS 50.0%
GATGGAGAAAGTGGCTTAGC+AGG + chr1_1:11831342-11831361 Msa0008200:CDS 50.0%
AAACCCACACACACGCAAGT+CGG - chr1_1:11831702-11831721 None:intergenic 50.0%
CTCCCTGTCAGTCCAAACTA+TGG + chr1_1:11832091-11832110 Msa0008200:intron 50.0%
CCCTGAATTCCCCCAAGATA+TGG - chr1_1:11832125-11832144 None:intergenic 50.0%
CGTTCCTTCTGTCTTTAGCC+TGG + chr1_1:11832723-11832742 Msa0008200:intron 50.0%
GAACCTGAGAGCAGCAAACT+TGG + chr1_1:11833137-11833156 Msa0008200:CDS 50.0%
!! TCACCAAGTTTGCTGCTCTC+AGG - chr1_1:11833143-11833162 None:intergenic 50.0%
TCAACAGTCTGTCGAGTCTC+AGG - chr1_1:11833173-11833192 None:intergenic 50.0%
TGAGGATTTCTCCCGGTAGT+TGG + chr1_1:11833451-11833470 Msa0008200:intron 50.0%
TATGGGCCTTCCAACAAGTG+AGG + chr1_1:11833522-11833541 Msa0008200:CDS 50.0%
!! TTCTGGAGCTCCTCACTTGT+TGG - chr1_1:11833535-11833554 None:intergenic 50.0%
AAGTGAGGAGCTCCAGAAAC+AGG + chr1_1:11833537-11833556 Msa0008200:CDS 50.0%
TGTATTGCAGCATCCGGAGA+TGG + chr1_1:11833679-11833698 Msa0008200:intron 50.0%
GCATTCGAGAAGTCCATCTC+CGG - chr1_1:11833695-11833714 None:intergenic 50.0%
GAAAGCTGCGCTATGATTCG+GGG + chr1_1:11833727-11833746 Msa0008200:exon 50.0%
TGCTGCTGAAGAGAAGGCGA+AGG + chr1_1:11831242-11831261 Msa0008200:CDS 55.0%
TGCGGCGGAGAAGAAAGCTA+TGG + chr1_1:11831290-11831309 Msa0008200:CDS 55.0%
GGCGGAGAAGAAAGCTATGG+AGG + chr1_1:11831293-11831312 Msa0008200:CDS 55.0%
AACCCACACACACGCAAGTC+GGG - chr1_1:11831701-11831720 None:intergenic 55.0%
CTTGCGTGTGTGTGGGTTTC+CGG + chr1_1:11831703-11831722 Msa0008200:intron 55.0%
! GAGCAGCAAACTTGGTGACC+TGG + chr1_1:11833145-11833164 Msa0008200:CDS 55.0%
TCTGTCGAGTCTCAGGATCC+AGG - chr1_1:11833166-11833185 None:intergenic 55.0%
! GGAGCTCCTCACTTGTTGGA+AGG - chr1_1:11833531-11833550 None:intergenic 55.0%
TACCTTCACAGCGCGAACGG+CGG - chr1_1:11831184-11831203 None:intergenic 60.0%
! AACCCCGACTTGCGTGTGTG+TGG + chr1_1:11831695-11831714 Msa0008200:intron 60.0%
! ACCCCGACTTGCGTGTGTGT+GGG + chr1_1:11831696-11831715 Msa0008200:intron 60.0%
ACCCACACACACGCAAGTCG+GGG - chr1_1:11831700-11831719 None:intergenic 60.0%
ATCCGCCGTTCGCGCTGTGA+AGG + chr1_1:11831179-11831198 Msa0008200:CDS 65.0%
GGCGGCTGCTGCTGTTGCTG+CGG + chr1_1:11831272-11831291 Msa0008200:CDS 70.0%
GGCTGCTGCTGTTGCTGCGG+CGG + chr1_1:11831275-11831294 Msa0008200:CDS 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 11830914 11834101 11830914 ID=Msa0008200;Name=Msa0008200
chr1_1 mRNA 11830914 11834101 11830914 ID=Msa0008200-mRNA-1;Parent=Msa0008200;Name=Msa0008200-mRNA-1;_AED=0.27;_eAED=0.27;_QI=71|1|1|1|1|1|6|374|296
chr1_1 exon 11830914 11831363 11830914 ID=Msa0008200-mRNA-1:exon:4432;Parent=Msa0008200-mRNA-1
chr1_1 exon 11832459 11832631 11832459 ID=Msa0008200-mRNA-1:exon:4433;Parent=Msa0008200-mRNA-1
chr1_1 exon 11832810 11832858 11832810 ID=Msa0008200-mRNA-1:exon:4434;Parent=Msa0008200-mRNA-1
chr1_1 exon 11833036 11833202 11833036 ID=Msa0008200-mRNA-1:exon:4435;Parent=Msa0008200-mRNA-1
chr1_1 exon 11833502 11833585 11833502 ID=Msa0008200-mRNA-1:exon:4436;Parent=Msa0008200-mRNA-1
chr1_1 exon 11833689 11834101 11833689 ID=Msa0008200-mRNA-1:exon:4437;Parent=Msa0008200-mRNA-1
chr1_1 five_prime_UTR 11830914 11830984 11830914 ID=Msa0008200-mRNA-1:five_prime_utr;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11830985 11831363 11830985 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11832459 11832631 11832459 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11832810 11832858 11832810 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11833036 11833202 11833036 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11833502 11833585 11833502 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 CDS 11833689 11833727 11833689 ID=Msa0008200-mRNA-1:cds;Parent=Msa0008200-mRNA-1
chr1_1 three_prime_UTR 11833728 11834101 11833728 ID=Msa0008200-mRNA-1:three_prime_utr;Parent=Msa0008200-mRNA-1
Gene Sequence

>Msa0008200

ATGGCGATTATCTCCGATTACCAAGAAGAAACCCAAACCTCATCTTCTTCTCAAACAAAACCCTCAAAACCTATTCCGTTCTCTTCCACCTTCGATCCTTCAAATCCAACCGCTTTTCTCGAAAATGTATTCGACTTCATCGCTAAGGAAAGTACCGATTTCTTCGACAATGATTCGGCTGAGAAGGTGGTTTTATCCGCCGTTCGCGCTGTGAAGGTAAAGAAAGCTAAGGCTGTTGCTGCCGAGAAAGCTAAGATTGCTGCTGAAGAGAAGGCGAAGGTTGATAAGGCGGCTGCTGCTGTTGCTGCGGCGGAGAAGAAAGCTATGGAGGTAGATGAGAAGGAAGATGAGAAGACGGATGGAGAAAGTGGCTTAGCAGTTCCCAATCAGGGTAATGGTATGGATCTGGAGAAATATTCTTGGACTCAAACTCTTCAAGAGCTCAATGTGAATGTTCCAGTGCCAAATGGAACAAAATCAAGGTTTGTCACATGTGAGATAAAGAAGAACCATCTAAAAGTTGGAATCAAAGGGCAGCCACCAATTATTGATGGGGAGCTGTATAAATCTATCAAGCCTGATGAATGTTACTGGAGCATAGAGGATCAGAGTACACTTTCTATTCTTTTAACCAAGCATGATCAAATGGACTGGTGGAAATGTCTTGTTAAGGGTGATCCTGAAATTAACACCCAAAAAGTTGAACCTGAGAGCAGCAAACTTGGTGACCTGGATCCTGAGACTCGACAGACTGTTGAAAAGATGATGTTTGATCAGAGGCAGAAGTCTATGGGCCTTCCAACAAGTGAGGAGCTCCAGAAACAGGAAATCATGAAGAAATTTATGAGTCAGCATCCGGAGATGGACTTCTCGAATGCAAAATTATCTTAG

Protein sequence

>Msa0008200

MAIISDYQEETQTSSSSQTKPSKPIPFSSTFDPSNPTAFLENVFDFIAKESTDFFDNDSAEKVVLSAVRAVKVKKAKAVAAEKAKIAAEEKAKVDKAAAAVAAAEKKAMEVDEKEDEKTDGESGLAVPNQGNGMDLEKYSWTQTLQELNVNVPVPNGTKSRFVTCEIKKNHLKVGIKGQPPIIDGELYKSIKPDECYWSIEDQSTLSILLTKHDQMDWWKCLVKGDPEINTQKVEPESSKLGDLDPETRQTVEKMMFDQRQKSMGLPTSEELQKQEIMKKFMSQHPEMDFSNAKLS*